Multiple sequence alignment - TraesCS5A01G072500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G072500 chr5A 100.000 4617 0 0 1 4617 83633626 83629010 0.000000e+00 8527
1 TraesCS5A01G072500 chr5D 91.843 4438 216 63 268 4616 90002506 89998126 0.000000e+00 6056
2 TraesCS5A01G072500 chr5D 93.506 77 5 0 189 265 90002749 90002673 1.050000e-21 115
3 TraesCS5A01G072500 chr5B 93.936 1748 90 9 2524 4270 94387647 94389379 0.000000e+00 2627
4 TraesCS5A01G072500 chr5B 92.485 1171 57 14 317 1480 94385202 94386348 0.000000e+00 1646
5 TraesCS5A01G072500 chr5B 93.545 976 50 5 1527 2492 94386679 94387651 0.000000e+00 1441
6 TraesCS5A01G072500 chr5B 90.816 98 9 0 189 286 94384776 94384873 1.040000e-26 132
7 TraesCS5A01G072500 chr7A 98.413 189 3 0 1 189 644283305 644283117 2.660000e-87 333
8 TraesCS5A01G072500 chr1B 87.379 206 20 2 1 201 8569270 8569066 9.990000e-57 231


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G072500 chr5A 83629010 83633626 4616 True 8527.0 8527 100.0000 1 4617 1 chr5A.!!$R1 4616
1 TraesCS5A01G072500 chr5D 89998126 90002749 4623 True 3085.5 6056 92.6745 189 4616 2 chr5D.!!$R1 4427
2 TraesCS5A01G072500 chr5B 94384776 94389379 4603 False 1461.5 2627 92.6955 189 4270 4 chr5B.!!$F1 4081

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
110 111 0.250513 GGCTTGGTAGTGTCCCTGAG 59.749 60.000 0.00 0.00 0.00 3.35 F
111 112 0.250513 GCTTGGTAGTGTCCCTGAGG 59.749 60.000 0.00 0.00 0.00 3.86 F
507 864 0.389391 CTTGACCACTGACGACCTGT 59.611 55.000 0.00 0.00 0.00 4.00 F
1724 2394 1.078848 AGCAAGGAGGCATGTCGAC 60.079 57.895 9.11 9.11 35.83 4.20 F
3542 4218 0.458025 GAAGTTCGGTAGCCTGGACG 60.458 60.000 0.00 0.00 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1962 2632 0.245539 CCTTTCTTACCGCCTCGTCA 59.754 55.000 0.00 0.0 0.00 4.35 R
2013 2683 1.338337 CCCCTGCTGTAGACGACTATG 59.662 57.143 0.00 0.0 0.00 2.23 R
2370 3045 2.858941 GACTCGGCGTTCTAGATTTTCC 59.141 50.000 6.85 0.0 0.00 3.13 R
3567 4243 0.103026 TGATGGCGAGAAGATGTCCG 59.897 55.000 0.00 0.0 0.00 4.79 R
4521 5236 0.238289 GGGTCTTGTGACACGCATTG 59.762 55.000 0.22 0.0 44.61 2.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 7.954788 AAAATATCGTTGATTAGGAGAGAGC 57.045 36.000 0.00 0.00 0.00 4.09
31 32 6.656632 AATATCGTTGATTAGGAGAGAGCA 57.343 37.500 0.00 0.00 0.00 4.26
32 33 6.656632 ATATCGTTGATTAGGAGAGAGCAA 57.343 37.500 0.00 0.00 0.00 3.91
33 34 4.801330 TCGTTGATTAGGAGAGAGCAAA 57.199 40.909 0.00 0.00 0.00 3.68
34 35 5.147330 TCGTTGATTAGGAGAGAGCAAAA 57.853 39.130 0.00 0.00 0.00 2.44
35 36 5.734720 TCGTTGATTAGGAGAGAGCAAAAT 58.265 37.500 0.00 0.00 0.00 1.82
36 37 6.873997 TCGTTGATTAGGAGAGAGCAAAATA 58.126 36.000 0.00 0.00 0.00 1.40
37 38 7.327975 TCGTTGATTAGGAGAGAGCAAAATAA 58.672 34.615 0.00 0.00 0.00 1.40
38 39 7.822334 TCGTTGATTAGGAGAGAGCAAAATAAA 59.178 33.333 0.00 0.00 0.00 1.40
39 40 8.119226 CGTTGATTAGGAGAGAGCAAAATAAAG 58.881 37.037 0.00 0.00 0.00 1.85
40 41 7.559590 TGATTAGGAGAGAGCAAAATAAAGC 57.440 36.000 0.00 0.00 0.00 3.51
41 42 7.341805 TGATTAGGAGAGAGCAAAATAAAGCT 58.658 34.615 0.00 0.00 45.25 3.74
42 43 8.486210 TGATTAGGAGAGAGCAAAATAAAGCTA 58.514 33.333 0.00 0.00 42.04 3.32
43 44 8.900983 ATTAGGAGAGAGCAAAATAAAGCTAG 57.099 34.615 0.00 0.00 42.04 3.42
44 45 5.122519 AGGAGAGAGCAAAATAAAGCTAGC 58.877 41.667 6.62 6.62 42.04 3.42
45 46 4.274705 GGAGAGAGCAAAATAAAGCTAGCC 59.725 45.833 12.13 0.00 42.04 3.93
46 47 4.848357 AGAGAGCAAAATAAAGCTAGCCA 58.152 39.130 12.13 0.00 42.04 4.75
47 48 5.444176 AGAGAGCAAAATAAAGCTAGCCAT 58.556 37.500 12.13 2.74 42.04 4.40
48 49 6.595682 AGAGAGCAAAATAAAGCTAGCCATA 58.404 36.000 12.13 5.25 42.04 2.74
49 50 6.484977 AGAGAGCAAAATAAAGCTAGCCATAC 59.515 38.462 12.13 0.00 42.04 2.39
50 51 5.237344 AGAGCAAAATAAAGCTAGCCATACG 59.763 40.000 12.13 0.00 42.04 3.06
51 52 3.975035 GCAAAATAAAGCTAGCCATACGC 59.025 43.478 12.13 0.55 37.98 4.42
60 61 2.027605 GCCATACGCTAGCGCAGA 59.972 61.111 35.63 21.88 44.19 4.26
61 62 1.373497 GCCATACGCTAGCGCAGAT 60.373 57.895 35.63 23.09 44.19 2.90
62 63 1.621301 GCCATACGCTAGCGCAGATG 61.621 60.000 35.63 30.76 44.19 2.90
63 64 1.010935 CCATACGCTAGCGCAGATGG 61.011 60.000 33.67 33.67 44.19 3.51
64 65 1.010935 CATACGCTAGCGCAGATGGG 61.011 60.000 35.63 14.97 44.19 4.00
65 66 1.464376 ATACGCTAGCGCAGATGGGT 61.464 55.000 35.63 16.85 44.19 4.51
66 67 2.071844 TACGCTAGCGCAGATGGGTC 62.072 60.000 35.63 0.00 44.19 4.46
67 68 2.659897 GCTAGCGCAGATGGGTCG 60.660 66.667 11.47 0.00 35.78 4.79
68 69 2.808315 CTAGCGCAGATGGGTCGT 59.192 61.111 11.47 0.00 0.00 4.34
69 70 1.141881 CTAGCGCAGATGGGTCGTT 59.858 57.895 11.47 0.00 0.00 3.85
70 71 0.872021 CTAGCGCAGATGGGTCGTTC 60.872 60.000 11.47 0.00 0.00 3.95
71 72 2.292794 TAGCGCAGATGGGTCGTTCC 62.293 60.000 11.47 0.00 0.00 3.62
72 73 2.264480 CGCAGATGGGTCGTTCCA 59.736 61.111 2.34 2.34 41.60 3.53
73 74 1.811266 CGCAGATGGGTCGTTCCAG 60.811 63.158 5.80 0.00 40.56 3.86
74 75 1.450312 GCAGATGGGTCGTTCCAGG 60.450 63.158 5.80 0.00 40.56 4.45
75 76 1.450312 CAGATGGGTCGTTCCAGGC 60.450 63.158 5.80 1.55 40.56 4.85
76 77 2.124695 GATGGGTCGTTCCAGGCC 60.125 66.667 0.00 0.00 40.56 5.19
77 78 3.699134 GATGGGTCGTTCCAGGCCC 62.699 68.421 0.00 0.00 40.56 5.80
79 80 4.410400 GGGTCGTTCCAGGCCCAG 62.410 72.222 0.00 0.00 40.76 4.45
80 81 3.319198 GGTCGTTCCAGGCCCAGA 61.319 66.667 0.00 0.00 35.97 3.86
81 82 2.747686 GTCGTTCCAGGCCCAGAA 59.252 61.111 0.00 0.00 0.00 3.02
82 83 1.671379 GTCGTTCCAGGCCCAGAAC 60.671 63.158 20.58 20.58 39.19 3.01
83 84 1.841556 TCGTTCCAGGCCCAGAACT 60.842 57.895 25.14 0.00 40.18 3.01
84 85 1.672356 CGTTCCAGGCCCAGAACTG 60.672 63.158 25.14 17.59 40.18 3.16
85 86 1.973812 GTTCCAGGCCCAGAACTGC 60.974 63.158 22.36 2.83 39.42 4.40
86 87 2.459969 TTCCAGGCCCAGAACTGCA 61.460 57.895 0.00 0.00 33.43 4.41
87 88 2.360852 CCAGGCCCAGAACTGCAG 60.361 66.667 13.48 13.48 33.43 4.41
88 89 2.433446 CAGGCCCAGAACTGCAGT 59.567 61.111 15.25 15.25 0.00 4.40
89 90 1.228367 CAGGCCCAGAACTGCAGTT 60.228 57.895 31.57 31.57 41.64 3.16
90 91 0.825010 CAGGCCCAGAACTGCAGTTT 60.825 55.000 31.58 18.72 38.56 2.66
91 92 0.825010 AGGCCCAGAACTGCAGTTTG 60.825 55.000 31.58 26.72 38.56 2.93
92 93 1.662044 GCCCAGAACTGCAGTTTGG 59.338 57.895 32.32 32.32 38.56 3.28
93 94 1.662044 CCCAGAACTGCAGTTTGGC 59.338 57.895 33.10 23.47 38.56 4.52
94 95 0.825010 CCCAGAACTGCAGTTTGGCT 60.825 55.000 33.10 24.83 38.56 4.75
95 96 1.035139 CCAGAACTGCAGTTTGGCTT 58.965 50.000 31.58 10.07 38.56 4.35
96 97 1.269413 CCAGAACTGCAGTTTGGCTTG 60.269 52.381 31.58 21.99 38.56 4.01
97 98 1.035139 AGAACTGCAGTTTGGCTTGG 58.965 50.000 31.58 0.00 38.56 3.61
98 99 0.746659 GAACTGCAGTTTGGCTTGGT 59.253 50.000 31.58 7.63 38.56 3.67
99 100 1.953686 GAACTGCAGTTTGGCTTGGTA 59.046 47.619 31.58 0.00 38.56 3.25
100 101 1.609208 ACTGCAGTTTGGCTTGGTAG 58.391 50.000 15.25 0.00 34.04 3.18
101 102 1.133792 ACTGCAGTTTGGCTTGGTAGT 60.134 47.619 15.25 0.00 34.04 2.73
102 103 1.267806 CTGCAGTTTGGCTTGGTAGTG 59.732 52.381 5.25 0.00 34.04 2.74
103 104 1.318576 GCAGTTTGGCTTGGTAGTGT 58.681 50.000 0.00 0.00 0.00 3.55
104 105 1.266989 GCAGTTTGGCTTGGTAGTGTC 59.733 52.381 0.00 0.00 0.00 3.67
105 106 1.880027 CAGTTTGGCTTGGTAGTGTCC 59.120 52.381 0.00 0.00 0.00 4.02
106 107 1.202891 AGTTTGGCTTGGTAGTGTCCC 60.203 52.381 0.00 0.00 0.00 4.46
107 108 1.145571 TTTGGCTTGGTAGTGTCCCT 58.854 50.000 0.00 0.00 0.00 4.20
108 109 0.400213 TTGGCTTGGTAGTGTCCCTG 59.600 55.000 0.00 0.00 0.00 4.45
109 110 0.472925 TGGCTTGGTAGTGTCCCTGA 60.473 55.000 0.00 0.00 0.00 3.86
110 111 0.250513 GGCTTGGTAGTGTCCCTGAG 59.749 60.000 0.00 0.00 0.00 3.35
111 112 0.250513 GCTTGGTAGTGTCCCTGAGG 59.749 60.000 0.00 0.00 0.00 3.86
112 113 1.938585 CTTGGTAGTGTCCCTGAGGA 58.061 55.000 0.00 0.00 41.08 3.71
113 114 1.827969 CTTGGTAGTGTCCCTGAGGAG 59.172 57.143 0.00 0.00 45.21 3.69
114 115 1.081481 TGGTAGTGTCCCTGAGGAGA 58.919 55.000 0.00 0.00 45.21 3.71
115 116 1.646447 TGGTAGTGTCCCTGAGGAGAT 59.354 52.381 0.00 0.00 45.21 2.75
116 117 2.044492 TGGTAGTGTCCCTGAGGAGATT 59.956 50.000 0.00 0.00 45.21 2.40
117 118 2.432510 GGTAGTGTCCCTGAGGAGATTG 59.567 54.545 0.00 0.00 45.21 2.67
118 119 2.630889 AGTGTCCCTGAGGAGATTGA 57.369 50.000 0.00 0.00 45.21 2.57
119 120 3.127791 AGTGTCCCTGAGGAGATTGAT 57.872 47.619 0.00 0.00 45.21 2.57
120 121 2.770802 AGTGTCCCTGAGGAGATTGATG 59.229 50.000 0.00 0.00 45.21 3.07
121 122 2.503356 GTGTCCCTGAGGAGATTGATGT 59.497 50.000 0.00 0.00 45.21 3.06
122 123 2.768527 TGTCCCTGAGGAGATTGATGTC 59.231 50.000 0.00 0.00 45.21 3.06
123 124 2.103941 GTCCCTGAGGAGATTGATGTCC 59.896 54.545 0.00 0.00 45.21 4.02
132 133 4.688021 GGAGATTGATGTCCTGTGTAGAC 58.312 47.826 0.18 0.00 37.27 2.59
134 135 5.336150 AGATTGATGTCCTGTGTAGACAG 57.664 43.478 12.98 12.98 46.76 3.51
144 145 4.427096 CTGTGTAGACAGGAGTGTAGTG 57.573 50.000 12.14 0.00 45.26 2.74
145 146 4.072839 CTGTGTAGACAGGAGTGTAGTGA 58.927 47.826 12.14 0.00 45.26 3.41
146 147 3.819337 TGTGTAGACAGGAGTGTAGTGAC 59.181 47.826 0.00 0.00 36.88 3.67
147 148 4.073549 GTGTAGACAGGAGTGTAGTGACT 58.926 47.826 0.00 0.00 36.88 3.41
148 149 4.154556 GTGTAGACAGGAGTGTAGTGACTC 59.845 50.000 0.00 0.00 41.55 3.36
149 150 2.428491 AGACAGGAGTGTAGTGACTCG 58.572 52.381 0.00 0.00 42.97 4.18
150 151 2.038689 AGACAGGAGTGTAGTGACTCGA 59.961 50.000 0.00 0.00 42.97 4.04
151 152 3.011119 GACAGGAGTGTAGTGACTCGAT 58.989 50.000 0.00 0.00 42.97 3.59
152 153 3.011119 ACAGGAGTGTAGTGACTCGATC 58.989 50.000 0.00 0.00 42.97 3.69
153 154 3.275143 CAGGAGTGTAGTGACTCGATCT 58.725 50.000 0.00 0.00 42.97 2.75
154 155 4.081031 ACAGGAGTGTAGTGACTCGATCTA 60.081 45.833 0.00 0.00 42.97 1.98
155 156 4.876679 CAGGAGTGTAGTGACTCGATCTAA 59.123 45.833 0.00 0.00 42.97 2.10
156 157 5.007234 CAGGAGTGTAGTGACTCGATCTAAG 59.993 48.000 0.00 0.00 42.97 2.18
157 158 4.877251 GGAGTGTAGTGACTCGATCTAAGT 59.123 45.833 0.00 0.00 42.97 2.24
158 159 6.047870 GGAGTGTAGTGACTCGATCTAAGTA 58.952 44.000 0.00 0.00 42.97 2.24
159 160 6.538021 GGAGTGTAGTGACTCGATCTAAGTAA 59.462 42.308 0.00 0.00 42.97 2.24
160 161 7.227116 GGAGTGTAGTGACTCGATCTAAGTAAT 59.773 40.741 0.00 0.00 42.97 1.89
161 162 7.921787 AGTGTAGTGACTCGATCTAAGTAATG 58.078 38.462 0.00 0.00 0.00 1.90
162 163 7.769507 AGTGTAGTGACTCGATCTAAGTAATGA 59.230 37.037 0.00 0.00 0.00 2.57
163 164 8.396390 GTGTAGTGACTCGATCTAAGTAATGAA 58.604 37.037 0.00 0.00 0.00 2.57
164 165 8.613482 TGTAGTGACTCGATCTAAGTAATGAAG 58.387 37.037 0.00 0.00 0.00 3.02
165 166 7.033530 AGTGACTCGATCTAAGTAATGAAGG 57.966 40.000 0.00 0.00 0.00 3.46
166 167 6.603997 AGTGACTCGATCTAAGTAATGAAGGT 59.396 38.462 0.00 0.00 0.00 3.50
167 168 7.122948 AGTGACTCGATCTAAGTAATGAAGGTT 59.877 37.037 0.00 0.00 0.00 3.50
168 169 7.432838 GTGACTCGATCTAAGTAATGAAGGTTC 59.567 40.741 0.00 0.00 0.00 3.62
169 170 7.339721 TGACTCGATCTAAGTAATGAAGGTTCT 59.660 37.037 0.00 0.00 0.00 3.01
170 171 8.068892 ACTCGATCTAAGTAATGAAGGTTCTT 57.931 34.615 0.00 0.00 0.00 2.52
171 172 8.532819 ACTCGATCTAAGTAATGAAGGTTCTTT 58.467 33.333 0.00 0.00 0.00 2.52
172 173 8.928270 TCGATCTAAGTAATGAAGGTTCTTTC 57.072 34.615 0.00 0.00 0.00 2.62
173 174 8.528643 TCGATCTAAGTAATGAAGGTTCTTTCA 58.471 33.333 0.24 0.24 41.00 2.69
174 175 9.319143 CGATCTAAGTAATGAAGGTTCTTTCAT 57.681 33.333 4.68 4.68 46.81 2.57
176 177 8.268850 TCTAAGTAATGAAGGTTCTTTCATGC 57.731 34.615 10.12 7.34 44.74 4.06
177 178 5.551760 AGTAATGAAGGTTCTTTCATGCG 57.448 39.130 10.12 0.00 44.74 4.73
178 179 2.927553 ATGAAGGTTCTTTCATGCGC 57.072 45.000 0.00 0.00 44.04 6.09
179 180 1.603456 TGAAGGTTCTTTCATGCGCA 58.397 45.000 14.96 14.96 32.39 6.09
180 181 1.952990 TGAAGGTTCTTTCATGCGCAA 59.047 42.857 17.11 0.00 32.39 4.85
181 182 2.360483 TGAAGGTTCTTTCATGCGCAAA 59.640 40.909 17.11 0.98 32.39 3.68
182 183 3.181482 TGAAGGTTCTTTCATGCGCAAAA 60.181 39.130 17.11 11.00 32.39 2.44
183 184 3.451141 AGGTTCTTTCATGCGCAAAAA 57.549 38.095 17.11 17.17 0.00 1.94
234 235 7.710907 TGAACAGTATATTTCTCATTTCCCTCG 59.289 37.037 0.00 0.00 0.00 4.63
374 731 9.434559 GTCAAAGTTTGAAAATACAGTACTGAC 57.565 33.333 29.30 12.99 42.15 3.51
507 864 0.389391 CTTGACCACTGACGACCTGT 59.611 55.000 0.00 0.00 0.00 4.00
561 918 2.659063 CCCACCAGATGAGGACGCA 61.659 63.158 0.00 0.00 0.00 5.24
606 963 1.153686 GAGGAAACCGTAGCCGTCC 60.154 63.158 0.00 0.00 0.00 4.79
607 964 1.880819 GAGGAAACCGTAGCCGTCCA 61.881 60.000 0.00 0.00 31.14 4.02
637 994 4.160635 GCGCCAAATCCGACGGTG 62.161 66.667 14.79 4.79 0.00 4.94
920 1277 1.746615 GGAAGCTGCGATCTTGGCA 60.747 57.895 8.09 0.00 38.92 4.92
1319 1688 5.521010 CCGCTGTATAAACTCCATTTACGAA 59.479 40.000 0.00 0.00 35.57 3.85
1381 1750 8.800370 TGTAATTTGCTGAAATGGACTACATA 57.200 30.769 0.00 0.00 39.40 2.29
1384 1753 7.944729 ATTTGCTGAAATGGACTACATAACT 57.055 32.000 0.00 0.00 39.40 2.24
1385 1754 9.461312 AATTTGCTGAAATGGACTACATAACTA 57.539 29.630 0.00 0.00 39.40 2.24
1386 1755 7.843490 TTGCTGAAATGGACTACATAACTAC 57.157 36.000 0.00 0.00 39.40 2.73
1387 1756 6.941857 TGCTGAAATGGACTACATAACTACA 58.058 36.000 0.00 0.00 39.40 2.74
1388 1757 7.041721 TGCTGAAATGGACTACATAACTACAG 58.958 38.462 0.00 0.00 39.40 2.74
1389 1758 6.018669 GCTGAAATGGACTACATAACTACAGC 60.019 42.308 0.00 0.00 39.40 4.40
1390 1759 6.941857 TGAAATGGACTACATAACTACAGCA 58.058 36.000 0.00 0.00 39.40 4.41
1391 1760 7.041721 TGAAATGGACTACATAACTACAGCAG 58.958 38.462 0.00 0.00 39.40 4.24
1394 1763 7.278461 ATGGACTACATAACTACAGCAGTAG 57.722 40.000 14.20 14.20 44.64 2.57
1408 1777 6.537453 ACAGCAGTAGATTCTTGATGTAGT 57.463 37.500 7.33 0.00 0.00 2.73
1409 1778 7.646548 ACAGCAGTAGATTCTTGATGTAGTA 57.353 36.000 7.33 0.00 0.00 1.82
1410 1779 8.243961 ACAGCAGTAGATTCTTGATGTAGTAT 57.756 34.615 7.33 0.00 0.00 2.12
1411 1780 8.700051 ACAGCAGTAGATTCTTGATGTAGTATT 58.300 33.333 7.33 0.00 0.00 1.89
1439 1815 8.743099 GTTTTACACATGTTTCTCAAAGTAAGC 58.257 33.333 0.00 0.00 0.00 3.09
1440 1816 7.561021 TTACACATGTTTCTCAAAGTAAGCA 57.439 32.000 0.00 0.00 0.00 3.91
1441 1817 6.064846 ACACATGTTTCTCAAAGTAAGCAG 57.935 37.500 0.00 0.00 0.00 4.24
1442 1818 5.822519 ACACATGTTTCTCAAAGTAAGCAGA 59.177 36.000 0.00 0.00 0.00 4.26
1443 1819 6.017605 ACACATGTTTCTCAAAGTAAGCAGAG 60.018 38.462 0.00 0.00 0.00 3.35
1444 1820 5.049129 ACATGTTTCTCAAAGTAAGCAGAGC 60.049 40.000 0.00 0.00 0.00 4.09
1445 1821 4.450976 TGTTTCTCAAAGTAAGCAGAGCA 58.549 39.130 0.00 0.00 0.00 4.26
1460 1836 2.547211 CAGAGCAGTGAGTTTGAACCAG 59.453 50.000 0.00 0.00 0.00 4.00
1469 1845 3.503363 TGAGTTTGAACCAGATGTCATGC 59.497 43.478 0.00 0.00 0.00 4.06
1516 1892 4.030977 GTCATTGTTCATTTCGCATGCTTC 59.969 41.667 17.13 0.00 0.00 3.86
1518 1894 1.135717 TGTTCATTTCGCATGCTTCGG 60.136 47.619 17.13 0.00 0.00 4.30
1533 2193 2.609916 GCTTCGGTAGCCAATTCTCTTC 59.390 50.000 0.00 0.00 44.48 2.87
1538 2198 3.619038 CGGTAGCCAATTCTCTTCTGTTC 59.381 47.826 0.00 0.00 0.00 3.18
1541 2201 4.313020 AGCCAATTCTCTTCTGTTCCAT 57.687 40.909 0.00 0.00 0.00 3.41
1545 2205 6.042437 AGCCAATTCTCTTCTGTTCCATTTTT 59.958 34.615 0.00 0.00 0.00 1.94
1561 2225 7.929941 TCCATTTTTATTGCCCCAAATTAAC 57.070 32.000 0.00 0.00 0.00 2.01
1576 2240 7.039784 CCCCAAATTAACGATGGATGATGTTAT 60.040 37.037 4.92 0.00 36.27 1.89
1589 2254 8.482852 TGGATGATGTTATCTCTACTGATCAA 57.517 34.615 0.00 0.00 0.00 2.57
1590 2255 8.363390 TGGATGATGTTATCTCTACTGATCAAC 58.637 37.037 0.00 0.00 0.00 3.18
1600 2265 7.101652 TCTCTACTGATCAACCTGTTATGTC 57.898 40.000 0.00 0.00 0.00 3.06
1604 2269 5.305585 ACTGATCAACCTGTTATGTCGTTT 58.694 37.500 0.00 0.00 0.00 3.60
1606 2271 6.367969 ACTGATCAACCTGTTATGTCGTTTAC 59.632 38.462 0.00 0.00 0.00 2.01
1607 2272 6.224584 TGATCAACCTGTTATGTCGTTTACA 58.775 36.000 0.00 0.00 43.86 2.41
1608 2273 5.910637 TCAACCTGTTATGTCGTTTACAC 57.089 39.130 0.00 0.00 42.09 2.90
1649 2319 9.715121 TGTTCTCTAATTAAACCGAGTTTACAT 57.285 29.630 8.23 4.57 37.66 2.29
1678 2348 6.371548 TGGATAACTAAATGACAGTCTTGTGC 59.628 38.462 1.31 0.00 37.76 4.57
1689 2359 3.144506 CAGTCTTGTGCTCTGAACCATT 58.855 45.455 0.00 0.00 0.00 3.16
1690 2360 3.058432 CAGTCTTGTGCTCTGAACCATTG 60.058 47.826 0.00 0.00 0.00 2.82
1691 2361 2.880890 GTCTTGTGCTCTGAACCATTGT 59.119 45.455 0.00 0.00 0.00 2.71
1722 2392 1.088340 CAGAGCAAGGAGGCATGTCG 61.088 60.000 0.00 0.00 35.83 4.35
1724 2394 1.078848 AGCAAGGAGGCATGTCGAC 60.079 57.895 9.11 9.11 35.83 4.20
1860 2530 6.945218 TGGAGCAATTGCCAATAATAAACTT 58.055 32.000 26.45 3.09 43.38 2.66
1962 2632 5.163683 GCTGTCTAATGATCACAATGTTGCT 60.164 40.000 0.00 0.00 0.00 3.91
2000 2670 1.134159 GGAGGTCATTCAGCAGCATCT 60.134 52.381 0.00 0.00 0.00 2.90
2013 2683 2.853662 GCAGCATCTTGATGATTCGCAC 60.854 50.000 14.09 0.00 35.45 5.34
2066 2736 2.332063 AAGGGCATCATTCAGGTACG 57.668 50.000 0.00 0.00 0.00 3.67
2210 2880 6.578023 CAAGGTGGTCTCCAAAATTTGTTAA 58.422 36.000 4.92 0.00 34.18 2.01
2250 2920 1.949525 GAACAATCATAGCATGCCCGT 59.050 47.619 15.66 0.00 0.00 5.28
2256 2926 1.760029 TCATAGCATGCCCGTAAGACA 59.240 47.619 15.66 0.00 43.02 3.41
2370 3045 5.446473 GCAAGTGAAGTCCGATGTTATTCTG 60.446 44.000 0.00 0.00 0.00 3.02
2426 3101 5.774690 TGCCTCATTCAGTTTAGATTTTGGT 59.225 36.000 0.00 0.00 0.00 3.67
2427 3102 6.095377 GCCTCATTCAGTTTAGATTTTGGTG 58.905 40.000 0.00 0.00 0.00 4.17
2634 3309 6.183360 CCTTGGTTTCATGTTCAGTATACGTC 60.183 42.308 0.00 0.00 0.00 4.34
2635 3310 5.785243 TGGTTTCATGTTCAGTATACGTCA 58.215 37.500 0.00 0.00 0.00 4.35
2636 3311 6.403049 TGGTTTCATGTTCAGTATACGTCAT 58.597 36.000 0.00 0.00 0.00 3.06
2637 3312 7.548967 TGGTTTCATGTTCAGTATACGTCATA 58.451 34.615 0.00 0.00 0.00 2.15
2638 3313 7.490079 TGGTTTCATGTTCAGTATACGTCATAC 59.510 37.037 0.00 0.00 39.99 2.39
2639 3314 7.042925 GGTTTCATGTTCAGTATACGTCATACC 60.043 40.741 0.00 3.32 40.49 2.73
2640 3315 6.954487 TCATGTTCAGTATACGTCATACCT 57.046 37.500 0.00 0.00 40.49 3.08
2647 3322 3.562973 AGTATACGTCATACCTGGACACG 59.437 47.826 0.00 5.36 40.49 4.49
2681 3356 8.150296 TCGATGTCATAACATAGATTCCAATGT 58.850 33.333 0.00 0.00 46.20 2.71
2801 3476 3.256631 CCCATATGCTAAAGCCATTGTCC 59.743 47.826 0.00 0.00 41.18 4.02
2846 3521 5.701750 GCCTACAGTTAGTCGATCTCATCTA 59.298 44.000 0.00 0.00 0.00 1.98
2907 3582 4.136796 TGCCTGCATTAGTTATCATCACC 58.863 43.478 0.00 0.00 0.00 4.02
2948 3623 8.789762 TCCTTAAAACTATAAAGGCAGTTCAAC 58.210 33.333 0.00 0.00 39.74 3.18
2950 3625 9.612620 CTTAAAACTATAAAGGCAGTTCAACAG 57.387 33.333 0.00 0.00 33.92 3.16
2953 3628 5.491982 ACTATAAAGGCAGTTCAACAGGAG 58.508 41.667 0.00 0.00 0.00 3.69
2972 3647 4.809673 GGAGAAACCTGCTTTTACAATGG 58.190 43.478 0.00 0.00 35.41 3.16
2990 3665 3.840831 GCAGTCATGAGCCACACTA 57.159 52.632 0.00 0.00 0.00 2.74
3054 3729 1.141858 GGGGATGCCTACCTGAAGAAG 59.858 57.143 2.19 0.00 0.00 2.85
3129 3804 2.895372 CGGGCCGTCATAACAGCC 60.895 66.667 19.97 0.00 46.55 4.85
3149 3824 2.267426 CGTGCCATCGATCAAAGTACA 58.733 47.619 0.00 0.00 0.00 2.90
3180 3855 3.507622 GGCAGCAAGACCTCTTTGTAATT 59.492 43.478 0.00 0.00 33.11 1.40
3218 3893 1.374758 GGGAGCAGTTGACCGACAG 60.375 63.158 0.00 0.00 0.00 3.51
3341 4017 6.839124 ATATGATGTGTTGTTGTGTGGAAT 57.161 33.333 0.00 0.00 0.00 3.01
3466 4142 1.035139 GGATGAAGCGGCATTTCCAT 58.965 50.000 1.45 0.00 34.01 3.41
3478 4154 3.814842 GGCATTTCCATGACGATATCACA 59.185 43.478 3.12 2.92 41.24 3.58
3542 4218 0.458025 GAAGTTCGGTAGCCTGGACG 60.458 60.000 0.00 0.00 0.00 4.79
3567 4243 2.258286 GTTCACCAATGCACCGGC 59.742 61.111 0.00 0.00 41.68 6.13
3652 4328 7.870445 GTGTCTTCAGAAGGGATAATAGATGAC 59.130 40.741 10.42 0.00 32.58 3.06
3730 4406 8.137437 GCCAAGCACATCTTTTTGTACATATAT 58.863 33.333 0.00 0.00 31.27 0.86
3793 4469 5.295540 GTCTCTAGACAAGAATTCCATTGCC 59.704 44.000 0.65 0.00 44.18 4.52
3794 4470 5.190528 TCTCTAGACAAGAATTCCATTGCCT 59.809 40.000 0.65 1.86 32.46 4.75
3801 4477 3.102204 AGAATTCCATTGCCTTTGGAGG 58.898 45.455 0.65 0.00 43.87 4.30
3833 4509 8.581578 TGTGTATCGGTTATGCAAGATTAGATA 58.418 33.333 0.00 0.00 31.46 1.98
3879 4556 7.470192 AGGGGAAATCTAAAGATTGTTCTCAA 58.530 34.615 5.99 0.00 43.41 3.02
4007 4690 4.690748 TGCTTAGATTTGTGTGAGCACTAC 59.309 41.667 1.99 0.17 45.44 2.73
4008 4691 4.932200 GCTTAGATTTGTGTGAGCACTACT 59.068 41.667 1.99 0.00 45.44 2.57
4009 4692 6.100004 GCTTAGATTTGTGTGAGCACTACTA 58.900 40.000 1.99 0.00 45.44 1.82
4010 4693 6.254589 GCTTAGATTTGTGTGAGCACTACTAG 59.745 42.308 1.99 0.00 45.44 2.57
4011 4694 5.730296 AGATTTGTGTGAGCACTACTAGT 57.270 39.130 0.00 0.00 45.44 2.57
4012 4695 6.835819 AGATTTGTGTGAGCACTACTAGTA 57.164 37.500 1.89 1.89 45.44 1.82
4013 4696 6.622549 AGATTTGTGTGAGCACTACTAGTAC 58.377 40.000 0.00 0.00 45.44 2.73
4014 4697 6.434652 AGATTTGTGTGAGCACTACTAGTACT 59.565 38.462 0.00 0.00 45.44 2.73
4015 4698 7.610692 AGATTTGTGTGAGCACTACTAGTACTA 59.389 37.037 1.89 1.89 45.44 1.82
4016 4699 7.514784 TTTGTGTGAGCACTACTAGTACTAA 57.485 36.000 3.76 0.00 45.44 2.24
4077 4760 1.238439 CGCAAAAGAAGAGCCTTCCA 58.762 50.000 10.27 0.00 0.00 3.53
4174 4857 9.931210 GAGTGTTATTCTTTTTCTTTTTCGAGA 57.069 29.630 0.00 0.00 0.00 4.04
4198 4881 4.648762 AGAGTAGAGTGCTGCTGATATTGT 59.351 41.667 0.00 0.00 37.20 2.71
4199 4882 5.830457 AGAGTAGAGTGCTGCTGATATTGTA 59.170 40.000 0.00 0.00 37.20 2.41
4200 4883 5.837437 AGTAGAGTGCTGCTGATATTGTAC 58.163 41.667 0.00 0.00 35.63 2.90
4239 4922 2.176798 TCCCAATATCCCATGTCCCAAC 59.823 50.000 0.00 0.00 0.00 3.77
4256 4939 3.305676 CCCAACGGTTGTTTCATATTGCA 60.306 43.478 18.73 0.00 35.72 4.08
4257 4940 4.493547 CCAACGGTTGTTTCATATTGCAT 58.506 39.130 18.73 0.00 35.72 3.96
4261 4944 5.189928 ACGGTTGTTTCATATTGCATCCTA 58.810 37.500 0.00 0.00 0.00 2.94
4270 4953 9.831737 GTTTCATATTGCATCCTATGTGTAATC 57.168 33.333 9.81 0.00 34.47 1.75
4271 4954 9.797642 TTTCATATTGCATCCTATGTGTAATCT 57.202 29.630 9.81 0.00 34.47 2.40
4277 4960 8.523915 TTGCATCCTATGTGTAATCTGATTTT 57.476 30.769 8.38 0.00 0.00 1.82
4278 4961 9.625747 TTGCATCCTATGTGTAATCTGATTTTA 57.374 29.630 8.38 0.00 0.00 1.52
4311 5002 3.110447 TGCAAAAGGGTGAAATTGCTC 57.890 42.857 10.25 0.00 46.27 4.26
4317 5008 3.064900 AGGGTGAAATTGCTCAGTCTC 57.935 47.619 0.00 0.00 0.00 3.36
4318 5009 2.087646 GGGTGAAATTGCTCAGTCTCC 58.912 52.381 0.00 0.00 0.00 3.71
4319 5010 2.290577 GGGTGAAATTGCTCAGTCTCCT 60.291 50.000 0.00 0.00 0.00 3.69
4324 5015 2.559381 ATTGCTCAGTCTCCTAGGGT 57.441 50.000 9.46 0.00 0.00 4.34
4328 5019 2.245028 TGCTCAGTCTCCTAGGGTACAT 59.755 50.000 9.46 0.00 0.00 2.29
4343 5034 4.706476 AGGGTACATCCATGAACAATTGTG 59.294 41.667 12.82 0.00 38.11 3.33
4346 5037 6.267817 GGTACATCCATGAACAATTGTGATG 58.732 40.000 23.85 23.85 35.97 3.07
4350 5041 4.151121 TCCATGAACAATTGTGATGGTGT 58.849 39.130 30.85 11.63 38.78 4.16
4351 5042 4.588106 TCCATGAACAATTGTGATGGTGTT 59.412 37.500 30.85 11.02 38.78 3.32
4359 5050 7.288810 ACAATTGTGATGGTGTTTTCATAGT 57.711 32.000 11.07 0.00 0.00 2.12
4371 5062 5.405269 GTGTTTTCATAGTGGGCATTGTTTC 59.595 40.000 0.00 0.00 0.00 2.78
4377 5068 5.822519 TCATAGTGGGCATTGTTTCAGATAC 59.177 40.000 0.00 0.00 0.00 2.24
4383 5075 4.265073 GGCATTGTTTCAGATACACTCCT 58.735 43.478 0.00 0.00 0.00 3.69
4386 5078 6.109359 GCATTGTTTCAGATACACTCCTAGT 58.891 40.000 0.00 0.00 0.00 2.57
4396 5088 6.932400 CAGATACACTCCTAGTAGGTCTACTG 59.068 46.154 16.02 12.45 45.25 2.74
4399 5091 5.890049 ACACTCCTAGTAGGTCTACTGTTT 58.110 41.667 16.02 1.44 45.25 2.83
4437 5152 7.013846 TCCTAACAAAGTATCAACAGTTTTGGG 59.986 37.037 0.00 0.00 34.07 4.12
4441 5156 4.675063 AGTATCAACAGTTTTGGGGGAT 57.325 40.909 0.00 0.00 0.00 3.85
4443 5158 3.833559 ATCAACAGTTTTGGGGGATCT 57.166 42.857 0.00 0.00 0.00 2.75
4452 5167 1.348008 TTGGGGGATCTAGCAGGCAG 61.348 60.000 0.00 0.00 0.00 4.85
4479 5194 4.890581 ACTACAACAATTGCCCAGTGTAAA 59.109 37.500 5.05 0.00 0.00 2.01
4480 5195 4.053469 ACAACAATTGCCCAGTGTAAAC 57.947 40.909 5.05 0.00 0.00 2.01
4496 5211 5.525745 AGTGTAAACGTGTGATCACATTTGA 59.474 36.000 30.10 16.94 43.97 2.69
4532 5247 3.364441 GCAGGGCAATGCGTGTCA 61.364 61.111 0.00 0.00 36.28 3.58
4533 5248 2.562912 CAGGGCAATGCGTGTCAC 59.437 61.111 0.00 0.00 31.37 3.67
4535 5250 1.528076 AGGGCAATGCGTGTCACAA 60.528 52.632 3.42 0.00 31.37 3.33
4536 5251 1.081242 GGGCAATGCGTGTCACAAG 60.081 57.895 3.42 0.00 31.37 3.16
4537 5252 1.514678 GGGCAATGCGTGTCACAAGA 61.515 55.000 3.42 0.00 31.37 3.02
4539 5254 0.385974 GCAATGCGTGTCACAAGACC 60.386 55.000 3.42 0.00 44.33 3.85
4540 5255 0.238289 CAATGCGTGTCACAAGACCC 59.762 55.000 3.42 0.00 44.33 4.46
4541 5256 0.108585 AATGCGTGTCACAAGACCCT 59.891 50.000 3.42 0.00 44.33 4.34
4542 5257 0.320771 ATGCGTGTCACAAGACCCTC 60.321 55.000 3.42 0.00 44.33 4.30
4543 5258 1.367840 GCGTGTCACAAGACCCTCT 59.632 57.895 3.42 0.00 44.33 3.69
4544 5259 0.249911 GCGTGTCACAAGACCCTCTT 60.250 55.000 3.42 0.00 44.33 2.85
4545 5260 1.810412 GCGTGTCACAAGACCCTCTTT 60.810 52.381 3.42 0.00 44.33 2.52
4546 5261 2.135933 CGTGTCACAAGACCCTCTTTC 58.864 52.381 3.42 0.00 44.33 2.62
4547 5262 2.224066 CGTGTCACAAGACCCTCTTTCT 60.224 50.000 3.42 0.00 44.33 2.52
4586 5311 5.069318 TGTGATTAGAATGAAACAGCACCA 58.931 37.500 0.00 0.00 0.00 4.17
4587 5312 5.711506 TGTGATTAGAATGAAACAGCACCAT 59.288 36.000 0.00 0.00 0.00 3.55
4589 5314 5.357878 TGATTAGAATGAAACAGCACCATCC 59.642 40.000 0.00 0.00 0.00 3.51
4594 5319 2.382882 TGAAACAGCACCATCCAAACA 58.617 42.857 0.00 0.00 0.00 2.83
4600 5325 2.821378 CAGCACCATCCAAACAATCTGA 59.179 45.455 0.00 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 9.646427 GCTCTCTCCTAATCAACGATATTTTAT 57.354 33.333 0.00 0.00 0.00 1.40
5 6 8.638873 TGCTCTCTCCTAATCAACGATATTTTA 58.361 33.333 0.00 0.00 0.00 1.52
6 7 7.500992 TGCTCTCTCCTAATCAACGATATTTT 58.499 34.615 0.00 0.00 0.00 1.82
7 8 7.055667 TGCTCTCTCCTAATCAACGATATTT 57.944 36.000 0.00 0.00 0.00 1.40
8 9 6.656632 TGCTCTCTCCTAATCAACGATATT 57.343 37.500 0.00 0.00 0.00 1.28
9 10 6.656632 TTGCTCTCTCCTAATCAACGATAT 57.343 37.500 0.00 0.00 0.00 1.63
10 11 6.465439 TTTGCTCTCTCCTAATCAACGATA 57.535 37.500 0.00 0.00 0.00 2.92
11 12 5.344743 TTTGCTCTCTCCTAATCAACGAT 57.655 39.130 0.00 0.00 0.00 3.73
12 13 4.801330 TTTGCTCTCTCCTAATCAACGA 57.199 40.909 0.00 0.00 0.00 3.85
13 14 7.539712 TTATTTTGCTCTCTCCTAATCAACG 57.460 36.000 0.00 0.00 0.00 4.10
14 15 7.912773 GCTTTATTTTGCTCTCTCCTAATCAAC 59.087 37.037 0.00 0.00 0.00 3.18
15 16 7.831193 AGCTTTATTTTGCTCTCTCCTAATCAA 59.169 33.333 0.00 0.00 33.90 2.57
16 17 7.341805 AGCTTTATTTTGCTCTCTCCTAATCA 58.658 34.615 0.00 0.00 33.90 2.57
17 18 7.800155 AGCTTTATTTTGCTCTCTCCTAATC 57.200 36.000 0.00 0.00 33.90 1.75
18 19 7.443879 GCTAGCTTTATTTTGCTCTCTCCTAAT 59.556 37.037 7.70 0.00 40.35 1.73
19 20 6.763610 GCTAGCTTTATTTTGCTCTCTCCTAA 59.236 38.462 7.70 0.00 40.35 2.69
20 21 6.284459 GCTAGCTTTATTTTGCTCTCTCCTA 58.716 40.000 7.70 0.00 40.35 2.94
21 22 5.122519 GCTAGCTTTATTTTGCTCTCTCCT 58.877 41.667 7.70 0.00 40.35 3.69
22 23 4.274705 GGCTAGCTTTATTTTGCTCTCTCC 59.725 45.833 15.72 0.00 40.35 3.71
23 24 4.878397 TGGCTAGCTTTATTTTGCTCTCTC 59.122 41.667 15.72 0.00 40.35 3.20
24 25 4.848357 TGGCTAGCTTTATTTTGCTCTCT 58.152 39.130 15.72 0.00 40.35 3.10
25 26 5.764487 ATGGCTAGCTTTATTTTGCTCTC 57.236 39.130 15.72 0.00 40.35 3.20
26 27 5.237344 CGTATGGCTAGCTTTATTTTGCTCT 59.763 40.000 15.72 0.00 40.35 4.09
27 28 5.444122 CGTATGGCTAGCTTTATTTTGCTC 58.556 41.667 15.72 0.00 40.35 4.26
28 29 4.261197 GCGTATGGCTAGCTTTATTTTGCT 60.261 41.667 15.72 0.00 42.67 3.91
29 30 3.975035 GCGTATGGCTAGCTTTATTTTGC 59.025 43.478 15.72 5.41 39.11 3.68
50 51 2.659897 CGACCCATCTGCGCTAGC 60.660 66.667 9.73 4.06 45.41 3.42
51 52 0.872021 GAACGACCCATCTGCGCTAG 60.872 60.000 9.73 4.58 0.00 3.42
52 53 1.141019 GAACGACCCATCTGCGCTA 59.859 57.895 9.73 0.00 0.00 4.26
53 54 2.125512 GAACGACCCATCTGCGCT 60.126 61.111 9.73 0.00 0.00 5.92
54 55 3.195698 GGAACGACCCATCTGCGC 61.196 66.667 0.00 0.00 0.00 6.09
55 56 1.811266 CTGGAACGACCCATCTGCG 60.811 63.158 0.00 0.00 38.00 5.18
56 57 1.450312 CCTGGAACGACCCATCTGC 60.450 63.158 0.00 0.00 38.00 4.26
57 58 1.450312 GCCTGGAACGACCCATCTG 60.450 63.158 0.00 0.00 38.00 2.90
58 59 2.670148 GGCCTGGAACGACCCATCT 61.670 63.158 0.00 0.00 38.00 2.90
59 60 2.124695 GGCCTGGAACGACCCATC 60.125 66.667 0.00 0.00 38.00 3.51
60 61 3.728373 GGGCCTGGAACGACCCAT 61.728 66.667 0.84 0.00 42.33 4.00
62 63 4.410400 CTGGGCCTGGAACGACCC 62.410 72.222 4.53 0.00 43.14 4.46
63 64 2.890766 TTCTGGGCCTGGAACGACC 61.891 63.158 10.79 0.00 39.54 4.79
64 65 1.671379 GTTCTGGGCCTGGAACGAC 60.671 63.158 20.58 6.10 33.69 4.34
65 66 1.841556 AGTTCTGGGCCTGGAACGA 60.842 57.895 25.25 1.90 44.33 3.85
66 67 1.672356 CAGTTCTGGGCCTGGAACG 60.672 63.158 25.25 19.45 44.33 3.95
67 68 1.973812 GCAGTTCTGGGCCTGGAAC 60.974 63.158 24.73 24.73 41.24 3.62
68 69 2.416107 CTGCAGTTCTGGGCCTGGAA 62.416 60.000 5.25 9.27 0.00 3.53
69 70 2.853542 TGCAGTTCTGGGCCTGGA 60.854 61.111 10.79 0.00 0.00 3.86
70 71 2.360852 CTGCAGTTCTGGGCCTGG 60.361 66.667 5.25 0.45 0.00 4.45
71 72 0.825010 AAACTGCAGTTCTGGGCCTG 60.825 55.000 31.20 4.06 37.25 4.85
72 73 0.825010 CAAACTGCAGTTCTGGGCCT 60.825 55.000 31.20 12.10 37.25 5.19
73 74 1.662044 CAAACTGCAGTTCTGGGCC 59.338 57.895 31.20 0.00 37.25 5.80
74 75 1.662044 CCAAACTGCAGTTCTGGGC 59.338 57.895 31.99 0.00 37.25 5.36
75 76 0.825010 AGCCAAACTGCAGTTCTGGG 60.825 55.000 35.60 32.02 37.25 4.45
76 77 1.035139 AAGCCAAACTGCAGTTCTGG 58.965 50.000 33.57 33.57 37.25 3.86
77 78 1.269413 CCAAGCCAAACTGCAGTTCTG 60.269 52.381 31.20 26.53 37.25 3.02
78 79 1.035139 CCAAGCCAAACTGCAGTTCT 58.965 50.000 31.20 21.08 37.25 3.01
79 80 0.746659 ACCAAGCCAAACTGCAGTTC 59.253 50.000 31.20 19.19 37.25 3.01
80 81 1.956477 CTACCAAGCCAAACTGCAGTT 59.044 47.619 26.36 26.36 40.50 3.16
81 82 1.133792 ACTACCAAGCCAAACTGCAGT 60.134 47.619 15.25 15.25 0.00 4.40
82 83 1.267806 CACTACCAAGCCAAACTGCAG 59.732 52.381 13.48 13.48 0.00 4.41
83 84 1.317613 CACTACCAAGCCAAACTGCA 58.682 50.000 0.00 0.00 0.00 4.41
84 85 1.266989 GACACTACCAAGCCAAACTGC 59.733 52.381 0.00 0.00 0.00 4.40
85 86 1.880027 GGACACTACCAAGCCAAACTG 59.120 52.381 0.00 0.00 0.00 3.16
86 87 1.202891 GGGACACTACCAAGCCAAACT 60.203 52.381 0.00 0.00 0.00 2.66
87 88 1.202891 AGGGACACTACCAAGCCAAAC 60.203 52.381 0.00 0.00 0.00 2.93
88 89 1.145571 AGGGACACTACCAAGCCAAA 58.854 50.000 0.00 0.00 0.00 3.28
89 90 0.400213 CAGGGACACTACCAAGCCAA 59.600 55.000 0.00 0.00 0.00 4.52
90 91 0.472925 TCAGGGACACTACCAAGCCA 60.473 55.000 0.00 0.00 0.00 4.75
91 92 0.250513 CTCAGGGACACTACCAAGCC 59.749 60.000 0.00 0.00 0.00 4.35
92 93 0.250513 CCTCAGGGACACTACCAAGC 59.749 60.000 0.00 0.00 33.58 4.01
93 94 1.827969 CTCCTCAGGGACACTACCAAG 59.172 57.143 0.00 0.00 36.57 3.61
94 95 1.431633 TCTCCTCAGGGACACTACCAA 59.568 52.381 0.00 0.00 36.57 3.67
95 96 1.081481 TCTCCTCAGGGACACTACCA 58.919 55.000 0.00 0.00 36.57 3.25
96 97 2.432510 CAATCTCCTCAGGGACACTACC 59.567 54.545 0.00 0.00 36.57 3.18
97 98 3.366396 TCAATCTCCTCAGGGACACTAC 58.634 50.000 0.00 0.00 36.57 2.73
98 99 3.757947 TCAATCTCCTCAGGGACACTA 57.242 47.619 0.00 0.00 36.57 2.74
99 100 2.630889 TCAATCTCCTCAGGGACACT 57.369 50.000 0.00 0.00 36.57 3.55
100 101 2.503356 ACATCAATCTCCTCAGGGACAC 59.497 50.000 0.00 0.00 36.57 3.67
101 102 2.768527 GACATCAATCTCCTCAGGGACA 59.231 50.000 0.00 0.00 36.57 4.02
102 103 2.103941 GGACATCAATCTCCTCAGGGAC 59.896 54.545 0.00 0.00 36.57 4.46
103 104 2.022625 AGGACATCAATCTCCTCAGGGA 60.023 50.000 0.00 0.00 39.70 4.20
104 105 2.104451 CAGGACATCAATCTCCTCAGGG 59.896 54.545 0.00 0.00 34.40 4.45
105 106 2.770802 ACAGGACATCAATCTCCTCAGG 59.229 50.000 0.00 0.00 34.40 3.86
106 107 3.197333 ACACAGGACATCAATCTCCTCAG 59.803 47.826 0.00 0.00 34.40 3.35
107 108 3.176411 ACACAGGACATCAATCTCCTCA 58.824 45.455 0.00 0.00 34.40 3.86
108 109 3.902881 ACACAGGACATCAATCTCCTC 57.097 47.619 0.00 0.00 34.40 3.71
109 110 4.404073 GTCTACACAGGACATCAATCTCCT 59.596 45.833 0.00 0.00 37.38 3.69
110 111 4.160439 TGTCTACACAGGACATCAATCTCC 59.840 45.833 0.00 0.00 38.57 3.71
111 112 5.330455 TGTCTACACAGGACATCAATCTC 57.670 43.478 0.00 0.00 38.57 2.75
112 113 5.336150 CTGTCTACACAGGACATCAATCT 57.664 43.478 0.00 0.00 45.75 2.40
124 125 3.819337 GTCACTACACTCCTGTCTACACA 59.181 47.826 0.00 0.00 0.00 3.72
125 126 4.073549 AGTCACTACACTCCTGTCTACAC 58.926 47.826 0.00 0.00 0.00 2.90
126 127 4.325119 GAGTCACTACACTCCTGTCTACA 58.675 47.826 0.00 0.00 37.43 2.74
127 128 3.371591 CGAGTCACTACACTCCTGTCTAC 59.628 52.174 0.00 0.00 39.90 2.59
128 129 3.260128 TCGAGTCACTACACTCCTGTCTA 59.740 47.826 0.00 0.00 39.90 2.59
129 130 2.038689 TCGAGTCACTACACTCCTGTCT 59.961 50.000 0.00 0.00 39.90 3.41
130 131 2.424557 TCGAGTCACTACACTCCTGTC 58.575 52.381 0.00 0.00 39.90 3.51
131 132 2.563261 TCGAGTCACTACACTCCTGT 57.437 50.000 0.00 0.00 39.90 4.00
132 133 3.275143 AGATCGAGTCACTACACTCCTG 58.725 50.000 0.00 0.00 39.90 3.86
133 134 3.637911 AGATCGAGTCACTACACTCCT 57.362 47.619 0.00 0.00 39.90 3.69
134 135 4.877251 ACTTAGATCGAGTCACTACACTCC 59.123 45.833 0.00 0.00 39.90 3.85
135 136 7.536895 TTACTTAGATCGAGTCACTACACTC 57.463 40.000 7.88 0.00 39.68 3.51
136 137 7.769507 TCATTACTTAGATCGAGTCACTACACT 59.230 37.037 7.88 0.00 0.00 3.55
137 138 7.917597 TCATTACTTAGATCGAGTCACTACAC 58.082 38.462 7.88 0.00 0.00 2.90
138 139 8.502105 TTCATTACTTAGATCGAGTCACTACA 57.498 34.615 7.88 0.00 0.00 2.74
139 140 8.071368 CCTTCATTACTTAGATCGAGTCACTAC 58.929 40.741 7.88 0.00 0.00 2.73
140 141 7.774157 ACCTTCATTACTTAGATCGAGTCACTA 59.226 37.037 7.88 0.00 0.00 2.74
141 142 6.603997 ACCTTCATTACTTAGATCGAGTCACT 59.396 38.462 7.88 0.00 0.00 3.41
142 143 6.797454 ACCTTCATTACTTAGATCGAGTCAC 58.203 40.000 7.88 0.00 0.00 3.67
143 144 7.339721 AGAACCTTCATTACTTAGATCGAGTCA 59.660 37.037 7.88 0.00 0.00 3.41
144 145 7.708998 AGAACCTTCATTACTTAGATCGAGTC 58.291 38.462 7.88 0.00 0.00 3.36
145 146 7.648039 AGAACCTTCATTACTTAGATCGAGT 57.352 36.000 9.31 9.31 0.00 4.18
146 147 8.934507 AAAGAACCTTCATTACTTAGATCGAG 57.065 34.615 0.00 0.00 0.00 4.04
147 148 8.528643 TGAAAGAACCTTCATTACTTAGATCGA 58.471 33.333 0.00 0.00 30.31 3.59
148 149 8.703604 TGAAAGAACCTTCATTACTTAGATCG 57.296 34.615 0.00 0.00 30.31 3.69
150 151 8.897752 GCATGAAAGAACCTTCATTACTTAGAT 58.102 33.333 0.00 0.00 42.16 1.98
151 152 7.064609 CGCATGAAAGAACCTTCATTACTTAGA 59.935 37.037 0.00 0.00 42.16 2.10
152 153 7.182761 CGCATGAAAGAACCTTCATTACTTAG 58.817 38.462 0.00 0.00 42.16 2.18
153 154 6.403200 GCGCATGAAAGAACCTTCATTACTTA 60.403 38.462 0.30 0.00 42.16 2.24
154 155 5.619981 GCGCATGAAAGAACCTTCATTACTT 60.620 40.000 0.30 0.00 42.16 2.24
155 156 4.142600 GCGCATGAAAGAACCTTCATTACT 60.143 41.667 0.30 0.00 42.16 2.24
156 157 4.098416 GCGCATGAAAGAACCTTCATTAC 58.902 43.478 0.30 0.00 42.16 1.89
157 158 3.755905 TGCGCATGAAAGAACCTTCATTA 59.244 39.130 5.66 0.00 42.16 1.90
158 159 2.557924 TGCGCATGAAAGAACCTTCATT 59.442 40.909 5.66 0.00 42.16 2.57
159 160 2.161855 TGCGCATGAAAGAACCTTCAT 58.838 42.857 5.66 0.00 44.98 2.57
160 161 1.603456 TGCGCATGAAAGAACCTTCA 58.397 45.000 5.66 0.00 39.56 3.02
161 162 2.704725 TTGCGCATGAAAGAACCTTC 57.295 45.000 12.75 0.00 0.00 3.46
162 163 3.451141 TTTTGCGCATGAAAGAACCTT 57.549 38.095 12.75 0.00 0.00 3.50
163 164 3.451141 TTTTTGCGCATGAAAGAACCT 57.549 38.095 12.75 0.00 0.00 3.50
185 186 1.684450 CTAGGGGCGTGTTTGGTTTTT 59.316 47.619 0.00 0.00 0.00 1.94
186 187 1.133730 TCTAGGGGCGTGTTTGGTTTT 60.134 47.619 0.00 0.00 0.00 2.43
187 188 0.475044 TCTAGGGGCGTGTTTGGTTT 59.525 50.000 0.00 0.00 0.00 3.27
197 198 3.753294 ATACTGTTCATTCTAGGGGCG 57.247 47.619 0.00 0.00 0.00 6.13
270 271 9.715121 TCTTACGATATGTACTGTTTTCCTTTT 57.285 29.630 0.00 0.00 31.20 2.27
308 441 6.401474 CGGCATGCAAGAATCATATACAGTAC 60.401 42.308 21.36 0.00 0.00 2.73
309 442 5.639082 CGGCATGCAAGAATCATATACAGTA 59.361 40.000 21.36 0.00 0.00 2.74
310 443 4.453478 CGGCATGCAAGAATCATATACAGT 59.547 41.667 21.36 0.00 0.00 3.55
311 444 4.453478 ACGGCATGCAAGAATCATATACAG 59.547 41.667 21.36 0.00 0.00 2.74
312 445 4.213906 CACGGCATGCAAGAATCATATACA 59.786 41.667 21.36 0.00 0.00 2.29
313 446 4.715896 CACGGCATGCAAGAATCATATAC 58.284 43.478 21.36 0.00 0.00 1.47
315 448 3.909776 CACGGCATGCAAGAATCATAT 57.090 42.857 21.36 0.00 0.00 1.78
374 731 3.001228 ACGACACATTATTATGCGTGCTG 59.999 43.478 0.00 0.00 35.03 4.41
395 752 6.815089 AGAGACTTGATCTGTCCATGAATAC 58.185 40.000 13.26 0.00 38.00 1.89
428 785 1.730451 GGGGTCGTGTTGTTTGGTGG 61.730 60.000 0.00 0.00 0.00 4.61
450 807 3.203716 CGGGTCTAAATGCCCTCTAAAC 58.796 50.000 0.00 0.00 42.67 2.01
470 827 1.226717 GTCAGCGAGACCTTAGCCG 60.227 63.158 1.39 0.00 41.56 5.52
507 864 4.451150 GGCCATGCGTCGACCAGA 62.451 66.667 10.58 0.00 0.00 3.86
561 918 1.079819 CGGACGCTGACTGGTCAAT 60.080 57.895 4.94 0.00 39.39 2.57
589 946 1.909781 TGGACGGCTACGGTTTCCT 60.910 57.895 0.00 0.00 46.48 3.36
592 949 1.301165 GTGTGGACGGCTACGGTTT 60.301 57.895 0.00 0.00 46.48 3.27
920 1277 0.804989 CGCAGCCTCCGAAAATTCTT 59.195 50.000 0.00 0.00 0.00 2.52
1319 1688 9.827411 CTAAGCTAAATCTAAAAAGAAAAGCGT 57.173 29.630 0.00 0.00 32.82 5.07
1356 1725 7.701539 ATGTAGTCCATTTCAGCAAATTACA 57.298 32.000 0.00 0.00 31.02 2.41
1381 1750 6.940739 ACATCAAGAATCTACTGCTGTAGTT 58.059 36.000 24.75 18.93 44.74 2.24
1384 1753 7.646548 ACTACATCAAGAATCTACTGCTGTA 57.353 36.000 3.25 3.25 0.00 2.74
1385 1754 6.537453 ACTACATCAAGAATCTACTGCTGT 57.463 37.500 0.66 0.66 0.00 4.40
1416 1792 7.497579 TCTGCTTACTTTGAGAAACATGTGTAA 59.502 33.333 0.00 0.01 0.00 2.41
1437 1813 2.216898 GTTCAAACTCACTGCTCTGCT 58.783 47.619 0.00 0.00 0.00 4.24
1438 1814 1.265365 GGTTCAAACTCACTGCTCTGC 59.735 52.381 0.00 0.00 0.00 4.26
1439 1815 2.547211 CTGGTTCAAACTCACTGCTCTG 59.453 50.000 0.00 0.00 0.00 3.35
1440 1816 2.435805 TCTGGTTCAAACTCACTGCTCT 59.564 45.455 0.00 0.00 0.00 4.09
1441 1817 2.838736 TCTGGTTCAAACTCACTGCTC 58.161 47.619 0.00 0.00 0.00 4.26
1442 1818 3.144506 CATCTGGTTCAAACTCACTGCT 58.855 45.455 0.00 0.00 0.00 4.24
1443 1819 2.880890 ACATCTGGTTCAAACTCACTGC 59.119 45.455 0.00 0.00 0.00 4.40
1444 1820 4.129380 TGACATCTGGTTCAAACTCACTG 58.871 43.478 0.00 0.00 0.00 3.66
1445 1821 4.422073 TGACATCTGGTTCAAACTCACT 57.578 40.909 0.00 0.00 0.00 3.41
1460 1836 6.690194 ATAGAAAGAAACCAGCATGACATC 57.310 37.500 0.00 0.00 39.69 3.06
1490 1866 4.478699 CATGCGAAATGAACAATGACAGT 58.521 39.130 0.00 0.00 0.00 3.55
1491 1867 3.302434 GCATGCGAAATGAACAATGACAG 59.698 43.478 0.00 0.00 0.00 3.51
1495 1871 3.001464 CGAAGCATGCGAAATGAACAATG 60.001 43.478 13.01 0.00 42.52 2.82
1498 1874 1.135717 CCGAAGCATGCGAAATGAACA 60.136 47.619 13.01 0.00 42.52 3.18
1499 1875 1.135689 ACCGAAGCATGCGAAATGAAC 60.136 47.619 13.01 0.00 42.52 3.18
1516 1892 3.252974 ACAGAAGAGAATTGGCTACCG 57.747 47.619 0.00 0.00 0.00 4.02
1518 1894 4.579869 TGGAACAGAAGAGAATTGGCTAC 58.420 43.478 0.00 0.00 0.00 3.58
1538 2198 6.595716 TCGTTAATTTGGGGCAATAAAAATGG 59.404 34.615 0.00 0.00 0.00 3.16
1541 2201 6.595716 CCATCGTTAATTTGGGGCAATAAAAA 59.404 34.615 0.00 0.00 0.00 1.94
1545 2205 4.537751 TCCATCGTTAATTTGGGGCAATA 58.462 39.130 0.00 0.00 0.00 1.90
1561 2225 7.150783 TCAGTAGAGATAACATCATCCATCG 57.849 40.000 0.00 0.00 0.00 3.84
1576 2240 6.183360 CGACATAACAGGTTGATCAGTAGAGA 60.183 42.308 0.00 0.00 0.00 3.10
1589 2254 6.870971 AAATGTGTAAACGACATAACAGGT 57.129 33.333 0.00 0.00 41.14 4.00
1653 2323 6.371548 GCACAAGACTGTCATTTAGTTATCCA 59.628 38.462 10.88 0.00 31.64 3.41
1654 2324 6.595716 AGCACAAGACTGTCATTTAGTTATCC 59.404 38.462 10.88 0.00 31.64 2.59
1655 2325 7.547370 AGAGCACAAGACTGTCATTTAGTTATC 59.453 37.037 10.88 2.22 31.64 1.75
1659 2329 4.993584 CAGAGCACAAGACTGTCATTTAGT 59.006 41.667 10.88 0.00 31.64 2.24
1664 2334 3.397482 GTTCAGAGCACAAGACTGTCAT 58.603 45.455 10.88 0.00 31.64 3.06
1665 2335 2.483714 GGTTCAGAGCACAAGACTGTCA 60.484 50.000 10.88 0.00 31.64 3.58
1666 2336 2.139118 GGTTCAGAGCACAAGACTGTC 58.861 52.381 0.00 0.00 31.64 3.51
1678 2348 4.756642 TGCAAACTCTACAATGGTTCAGAG 59.243 41.667 0.00 0.00 40.31 3.35
1689 2359 3.683365 TGCTCTGATGCAAACTCTACA 57.317 42.857 0.00 0.00 40.29 2.74
1722 2392 1.129437 GCCTTCTTGATTGCGTCTGTC 59.871 52.381 0.00 0.00 0.00 3.51
1724 2394 1.159285 TGCCTTCTTGATTGCGTCTG 58.841 50.000 0.00 0.00 0.00 3.51
1911 2581 1.607612 CACTACTCCCCGGCCATTT 59.392 57.895 2.24 0.00 0.00 2.32
1962 2632 0.245539 CCTTTCTTACCGCCTCGTCA 59.754 55.000 0.00 0.00 0.00 4.35
2000 2670 3.780902 ACGACTATGTGCGAATCATCAA 58.219 40.909 0.00 0.00 0.00 2.57
2013 2683 1.338337 CCCCTGCTGTAGACGACTATG 59.662 57.143 0.00 0.00 0.00 2.23
2066 2736 7.315142 TCCAAACTAACATGATTTGCTGATTC 58.685 34.615 0.00 0.00 32.98 2.52
2250 2920 5.047847 GCAGTACGCCATTTATCTGTCTTA 58.952 41.667 0.00 0.00 32.94 2.10
2256 2926 4.457603 TGTTTTGCAGTACGCCATTTATCT 59.542 37.500 7.13 0.00 41.33 1.98
2358 3033 8.269424 CGTTCTAGATTTTCCAGAATAACATCG 58.731 37.037 0.00 0.00 31.40 3.84
2370 3045 2.858941 GACTCGGCGTTCTAGATTTTCC 59.141 50.000 6.85 0.00 0.00 3.13
2426 3101 7.037586 AGGTTCATGAAGAGTAGTAAAATCCCA 60.038 37.037 8.80 0.00 0.00 4.37
2427 3102 7.339482 AGGTTCATGAAGAGTAGTAAAATCCC 58.661 38.462 8.80 1.11 0.00 3.85
2600 3275 1.281656 GAAACCAAGGCAACGTCCG 59.718 57.895 0.00 0.00 46.39 4.79
2634 3309 2.231478 AGAACAGACGTGTCCAGGTATG 59.769 50.000 11.81 11.81 42.17 2.39
2635 3310 2.492484 GAGAACAGACGTGTCCAGGTAT 59.508 50.000 0.00 0.00 35.08 2.73
2636 3311 1.884579 GAGAACAGACGTGTCCAGGTA 59.115 52.381 0.00 0.00 35.08 3.08
2637 3312 0.674534 GAGAACAGACGTGTCCAGGT 59.325 55.000 0.00 0.00 35.08 4.00
2638 3313 0.387367 CGAGAACAGACGTGTCCAGG 60.387 60.000 0.00 0.00 35.08 4.45
2639 3314 0.591659 TCGAGAACAGACGTGTCCAG 59.408 55.000 0.00 0.00 35.08 3.86
2640 3315 1.068541 CATCGAGAACAGACGTGTCCA 60.069 52.381 0.00 0.00 35.08 4.02
2647 3322 7.418408 TCTATGTTATGACATCGAGAACAGAC 58.582 38.462 6.36 0.00 42.83 3.51
2681 3356 2.033299 CGAGGAGTGCTTTGCAAAAGAA 59.967 45.455 13.84 0.00 41.47 2.52
2732 3407 4.376340 AGTTGCTGACTTTTTGGAACAG 57.624 40.909 0.00 0.00 35.15 3.16
2778 3453 2.629617 ACAATGGCTTTAGCATATGGGC 59.370 45.455 4.56 0.16 44.36 5.36
2801 3476 9.419297 GTAGGCTTTAGAAAAATACAAAAAGGG 57.581 33.333 0.00 0.00 0.00 3.95
2846 3521 7.526142 TTCTTAGATCATGTAGTATTCGCCT 57.474 36.000 0.00 0.00 0.00 5.52
2907 3582 8.816640 AGTTTTAAGGAACATTACAAAGCATG 57.183 30.769 0.00 0.00 31.94 4.06
2938 3613 1.609072 GGTTTCTCCTGTTGAACTGCC 59.391 52.381 0.00 0.00 0.00 4.85
2950 3625 4.809673 CCATTGTAAAAGCAGGTTTCTCC 58.190 43.478 0.00 0.00 0.00 3.71
2953 3628 3.988819 TGCCATTGTAAAAGCAGGTTTC 58.011 40.909 0.00 0.00 34.72 2.78
2972 3647 1.205655 TCTAGTGTGGCTCATGACTGC 59.794 52.381 0.00 0.00 0.00 4.40
3019 3694 3.181472 GCATCCCCAAATGATCTGGAAAC 60.181 47.826 1.07 0.00 35.85 2.78
3054 3729 0.813821 GGTCTCTGGCAAATTCAGGC 59.186 55.000 0.00 0.00 33.36 4.85
3129 3804 2.029244 GTGTACTTTGATCGATGGCACG 59.971 50.000 0.54 0.00 0.00 5.34
3149 3824 0.543749 GTCTTGCTGCCCTATCTGGT 59.456 55.000 0.00 0.00 0.00 4.00
3180 3855 0.250124 ACAGACCGTCCGATGCAAAA 60.250 50.000 0.00 0.00 0.00 2.44
3218 3893 4.965858 CGATCTCGACCGCCGCTC 62.966 72.222 0.00 0.00 43.02 5.03
3228 3903 3.106672 CGGGTTCTTAAAGACGATCTCG 58.893 50.000 0.00 0.00 46.33 4.04
3341 4017 3.808265 GCTATTCCCTGAGCACATGCATA 60.808 47.826 6.64 0.00 45.16 3.14
3408 4084 2.708051 TGTCGACGTACCTCATCTCTT 58.292 47.619 11.62 0.00 0.00 2.85
3423 4099 1.789506 TTCGATGTGTTGCATGTCGA 58.210 45.000 0.00 0.00 38.06 4.20
3451 4127 0.248215 CGTCATGGAAATGCCGCTTC 60.248 55.000 0.00 0.00 40.66 3.86
3542 4218 1.686052 TGCATTGGTGAACCTGAAACC 59.314 47.619 0.37 0.00 36.82 3.27
3567 4243 0.103026 TGATGGCGAGAAGATGTCCG 59.897 55.000 0.00 0.00 0.00 4.79
3652 4328 5.109210 GGTTTGTTCCTTTTCCTTTCACTG 58.891 41.667 0.00 0.00 0.00 3.66
3730 4406 8.768397 AGAGTGGGTTTGATTATATACTCACAA 58.232 33.333 6.79 1.97 42.92 3.33
3793 4469 3.120199 CGATACACAAAGTGCCTCCAAAG 60.120 47.826 0.00 0.00 36.98 2.77
3794 4470 2.811431 CGATACACAAAGTGCCTCCAAA 59.189 45.455 0.00 0.00 36.98 3.28
3801 4477 3.126171 TGCATAACCGATACACAAAGTGC 59.874 43.478 0.00 0.00 36.98 4.40
3879 4556 1.746787 TGCGATGCATGCAAAGAATCT 59.253 42.857 26.68 5.83 39.87 2.40
3978 4655 6.026513 GCTCACACAAATCTAAGCAATCTTC 58.973 40.000 0.00 0.00 33.85 2.87
4007 4690 5.529791 ACGGCAATGCTACATTAGTACTAG 58.470 41.667 4.82 0.00 0.00 2.57
4008 4691 5.524971 ACGGCAATGCTACATTAGTACTA 57.475 39.130 4.82 0.00 0.00 1.82
4009 4692 4.402056 ACGGCAATGCTACATTAGTACT 57.598 40.909 4.82 0.00 0.00 2.73
4010 4693 5.120208 CCATACGGCAATGCTACATTAGTAC 59.880 44.000 4.82 0.00 0.00 2.73
4011 4694 5.234752 CCATACGGCAATGCTACATTAGTA 58.765 41.667 4.82 0.00 0.00 1.82
4012 4695 4.065088 CCATACGGCAATGCTACATTAGT 58.935 43.478 4.82 0.00 0.00 2.24
4013 4696 3.436704 CCCATACGGCAATGCTACATTAG 59.563 47.826 4.82 0.00 0.00 1.73
4014 4697 3.407698 CCCATACGGCAATGCTACATTA 58.592 45.455 4.82 0.00 0.00 1.90
4015 4698 2.229792 CCCATACGGCAATGCTACATT 58.770 47.619 4.82 0.00 0.00 2.71
4016 4699 1.896220 CCCATACGGCAATGCTACAT 58.104 50.000 4.82 0.00 0.00 2.29
4077 4760 4.743057 AAAGAAAAGGAGCAAAAGCTGT 57.257 36.364 0.00 0.00 0.00 4.40
4171 4854 2.752354 TCAGCAGCACTCTACTCTTCTC 59.248 50.000 0.00 0.00 0.00 2.87
4174 4857 5.128499 ACAATATCAGCAGCACTCTACTCTT 59.872 40.000 0.00 0.00 0.00 2.85
4175 4858 4.648762 ACAATATCAGCAGCACTCTACTCT 59.351 41.667 0.00 0.00 0.00 3.24
4198 4881 6.833041 TGGGATTTCACACAAAAGACTAGTA 58.167 36.000 0.00 0.00 0.00 1.82
4199 4882 5.690865 TGGGATTTCACACAAAAGACTAGT 58.309 37.500 0.00 0.00 0.00 2.57
4200 4883 6.633500 TTGGGATTTCACACAAAAGACTAG 57.367 37.500 0.00 0.00 29.81 2.57
4239 4922 4.637483 AGGATGCAATATGAAACAACCG 57.363 40.909 0.00 0.00 30.87 4.44
4277 4960 6.705381 CACCCTTTTGCAATCTCAAATTTGTA 59.295 34.615 17.47 8.08 36.04 2.41
4278 4961 5.528320 CACCCTTTTGCAATCTCAAATTTGT 59.472 36.000 17.47 0.00 36.04 2.83
4311 5002 3.314307 TGGATGTACCCTAGGAGACTG 57.686 52.381 11.48 0.00 38.68 3.51
4317 5008 4.771114 TTGTTCATGGATGTACCCTAGG 57.229 45.455 0.06 0.06 38.00 3.02
4318 5009 6.038603 CACAATTGTTCATGGATGTACCCTAG 59.961 42.308 8.77 0.00 38.00 3.02
4319 5010 5.885352 CACAATTGTTCATGGATGTACCCTA 59.115 40.000 8.77 0.00 38.00 3.53
4324 5015 5.951148 ACCATCACAATTGTTCATGGATGTA 59.049 36.000 34.01 4.59 37.93 2.29
4328 5019 4.151121 ACACCATCACAATTGTTCATGGA 58.849 39.130 34.01 20.24 37.93 3.41
4343 5034 3.088532 TGCCCACTATGAAAACACCATC 58.911 45.455 0.00 0.00 0.00 3.51
4346 5037 3.258123 ACAATGCCCACTATGAAAACACC 59.742 43.478 0.00 0.00 0.00 4.16
4350 5041 5.538053 TCTGAAACAATGCCCACTATGAAAA 59.462 36.000 0.00 0.00 0.00 2.29
4351 5042 5.076182 TCTGAAACAATGCCCACTATGAAA 58.924 37.500 0.00 0.00 0.00 2.69
4359 5050 4.009675 GAGTGTATCTGAAACAATGCCCA 58.990 43.478 0.00 0.00 0.00 5.36
4371 5062 6.932400 CAGTAGACCTACTAGGAGTGTATCTG 59.068 46.154 9.28 0.86 43.98 2.90
4377 5068 5.944599 TGAAACAGTAGACCTACTAGGAGTG 59.055 44.000 9.28 2.80 43.98 3.51
4383 5075 7.344134 TGCTAGATGAAACAGTAGACCTACTA 58.656 38.462 9.16 0.00 43.98 1.82
4386 5078 6.424032 TCTGCTAGATGAAACAGTAGACCTA 58.576 40.000 0.00 0.00 0.00 3.08
4396 5088 7.550906 ACTTTGTTAGGATCTGCTAGATGAAAC 59.449 37.037 0.00 5.96 34.53 2.78
4399 5091 6.798427 ACTTTGTTAGGATCTGCTAGATGA 57.202 37.500 0.00 0.00 34.53 2.92
4437 5152 1.227793 GTGCTGCCTGCTAGATCCC 60.228 63.158 0.00 0.00 43.37 3.85
4441 5156 0.532573 GTAGTGTGCTGCCTGCTAGA 59.467 55.000 0.00 0.00 43.37 2.43
4443 5158 0.684535 TTGTAGTGTGCTGCCTGCTA 59.315 50.000 0.00 0.00 43.37 3.49
4452 5167 1.339610 TGGGCAATTGTTGTAGTGTGC 59.660 47.619 7.40 0.00 0.00 4.57
4496 5211 4.824289 CTGCAAGGTGCTAAATCCAAAAT 58.176 39.130 1.43 0.00 45.31 1.82
4521 5236 0.238289 GGGTCTTGTGACACGCATTG 59.762 55.000 0.22 0.00 44.61 2.82
4535 5250 3.459969 ACTTGTTCCAAGAAAGAGGGTCT 59.540 43.478 10.73 0.00 0.00 3.85
4536 5251 3.821748 ACTTGTTCCAAGAAAGAGGGTC 58.178 45.455 10.73 0.00 0.00 4.46
4537 5252 3.953542 ACTTGTTCCAAGAAAGAGGGT 57.046 42.857 10.73 0.00 0.00 4.34
4539 5254 7.148069 ACAGTTTTACTTGTTCCAAGAAAGAGG 60.148 37.037 10.73 0.00 0.00 3.69
4540 5255 7.698130 CACAGTTTTACTTGTTCCAAGAAAGAG 59.302 37.037 10.73 0.00 0.00 2.85
4541 5256 7.392113 TCACAGTTTTACTTGTTCCAAGAAAGA 59.608 33.333 10.73 0.00 0.00 2.52
4542 5257 7.535139 TCACAGTTTTACTTGTTCCAAGAAAG 58.465 34.615 10.73 0.00 0.00 2.62
4543 5258 7.455641 TCACAGTTTTACTTGTTCCAAGAAA 57.544 32.000 10.73 4.77 0.00 2.52
4544 5259 7.639113 ATCACAGTTTTACTTGTTCCAAGAA 57.361 32.000 10.73 0.00 0.00 2.52
4545 5260 7.639113 AATCACAGTTTTACTTGTTCCAAGA 57.361 32.000 10.73 0.00 0.00 3.02
4546 5261 8.836413 TCTAATCACAGTTTTACTTGTTCCAAG 58.164 33.333 2.54 2.54 0.00 3.61
4547 5262 8.740123 TCTAATCACAGTTTTACTTGTTCCAA 57.260 30.769 0.00 0.00 0.00 3.53
4549 5264 9.612620 CATTCTAATCACAGTTTTACTTGTTCC 57.387 33.333 0.00 0.00 0.00 3.62
4569 5294 4.299586 TGGATGGTGCTGTTTCATTCTA 57.700 40.909 0.00 0.00 0.00 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.