Multiple sequence alignment - TraesCS5A01G072200
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5A01G072200 | chr5A | 100.000 | 5688 | 0 | 0 | 1 | 5688 | 82981111 | 82986798 | 0.000000e+00 | 10504 |
1 | TraesCS5A01G072200 | chr5B | 92.873 | 4027 | 195 | 54 | 1690 | 5688 | 95022788 | 95018826 | 0.000000e+00 | 5762 |
2 | TraesCS5A01G072200 | chr5B | 95.615 | 1163 | 41 | 7 | 515 | 1667 | 95023945 | 95022783 | 0.000000e+00 | 1857 |
3 | TraesCS5A01G072200 | chr5B | 85.443 | 474 | 65 | 4 | 1 | 472 | 95024668 | 95024197 | 1.840000e-134 | 490 |
4 | TraesCS5A01G072200 | chr5D | 90.843 | 3571 | 261 | 35 | 1687 | 5233 | 89045858 | 89049386 | 0.000000e+00 | 4723 |
5 | TraesCS5A01G072200 | chr5D | 91.001 | 1678 | 109 | 20 | 1 | 1667 | 89044220 | 89045866 | 0.000000e+00 | 2224 |
6 | TraesCS5A01G072200 | chr5D | 83.830 | 470 | 26 | 12 | 5226 | 5688 | 89050827 | 89051253 | 8.880000e-108 | 401 |
7 | TraesCS5A01G072200 | chr4A | 83.985 | 537 | 71 | 10 | 1139 | 1672 | 546017795 | 546018319 | 8.510000e-138 | 501 |
8 | TraesCS5A01G072200 | chr4D | 83.654 | 520 | 72 | 8 | 1142 | 1657 | 50977625 | 50977115 | 1.430000e-130 | 477 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5A01G072200 | chr5A | 82981111 | 82986798 | 5687 | False | 10504.000000 | 10504 | 100.000000 | 1 | 5688 | 1 | chr5A.!!$F1 | 5687 |
1 | TraesCS5A01G072200 | chr5B | 95018826 | 95024668 | 5842 | True | 2703.000000 | 5762 | 91.310333 | 1 | 5688 | 3 | chr5B.!!$R1 | 5687 |
2 | TraesCS5A01G072200 | chr5D | 89044220 | 89051253 | 7033 | False | 2449.333333 | 4723 | 88.558000 | 1 | 5688 | 3 | chr5D.!!$F1 | 5687 |
3 | TraesCS5A01G072200 | chr4A | 546017795 | 546018319 | 524 | False | 501.000000 | 501 | 83.985000 | 1139 | 1672 | 1 | chr4A.!!$F1 | 533 |
4 | TraesCS5A01G072200 | chr4D | 50977115 | 50977625 | 510 | True | 477.000000 | 477 | 83.654000 | 1142 | 1657 | 1 | chr4D.!!$R1 | 515 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
497 | 508 | 0.250513 | GAAGGGAACAGATGAGCGGT | 59.749 | 55.000 | 0.00 | 0.0 | 0.00 | 5.68 | F |
2357 | 2586 | 1.035139 | GGATGGCTTGCATGGGTAAG | 58.965 | 55.000 | 1.34 | 0.0 | 39.45 | 2.34 | F |
3370 | 3602 | 1.154093 | CCATTCAGCGCTTGTGCAG | 60.154 | 57.895 | 7.50 | 0.0 | 39.64 | 4.41 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2392 | 2621 | 1.485066 | CGTCCCCAGTAAGTTAGCCAT | 59.515 | 52.381 | 0.00 | 0.00 | 0.00 | 4.40 | R |
3986 | 4222 | 0.745845 | ACAGAACATCCGAGCATGCC | 60.746 | 55.000 | 15.66 | 4.99 | 0.00 | 4.40 | R |
5266 | 6966 | 0.250038 | CACCATCCTCCACTATGGCG | 60.250 | 60.000 | 0.00 | 0.00 | 45.53 | 5.69 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
41 | 42 | 9.410556 | ACAATGATTTGTTGTAGATTTTGCTAC | 57.589 | 29.630 | 0.00 | 0.00 | 43.57 | 3.58 |
42 | 43 | 9.409312 | CAATGATTTGTTGTAGATTTTGCTACA | 57.591 | 29.630 | 0.00 | 0.00 | 46.52 | 2.74 |
55 | 56 | 2.054687 | TGCTACAACTGGTAACGACG | 57.945 | 50.000 | 0.00 | 0.00 | 42.51 | 5.12 |
57 | 58 | 1.336240 | GCTACAACTGGTAACGACGGT | 60.336 | 52.381 | 0.00 | 0.00 | 42.51 | 4.83 |
95 | 96 | 1.575244 | CGAATGATGCGACCTGTGAT | 58.425 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
115 | 116 | 1.953017 | CCGCCACCGACAATTTTGA | 59.047 | 52.632 | 0.00 | 0.00 | 36.29 | 2.69 |
119 | 120 | 1.616620 | CCACCGACAATTTTGATGCG | 58.383 | 50.000 | 0.00 | 0.00 | 0.00 | 4.73 |
130 | 131 | 0.871722 | TTTGATGCGACCGTCTTTGG | 59.128 | 50.000 | 0.00 | 0.00 | 0.00 | 3.28 |
133 | 134 | 1.970917 | GATGCGACCGTCTTTGGCAG | 61.971 | 60.000 | 5.30 | 0.00 | 37.01 | 4.85 |
146 | 147 | 1.515081 | TTGGCAGTTGTTACTACCGC | 58.485 | 50.000 | 0.00 | 0.00 | 40.23 | 5.68 |
189 | 190 | 0.604780 | CATGATGATGACCGGAGCCC | 60.605 | 60.000 | 9.46 | 0.00 | 0.00 | 5.19 |
196 | 197 | 4.493747 | GACCGGAGCCCTCGTTCG | 62.494 | 72.222 | 9.46 | 0.00 | 0.00 | 3.95 |
223 | 224 | 0.881118 | CAGGGAAACATTGTGACCGG | 59.119 | 55.000 | 0.00 | 0.00 | 0.00 | 5.28 |
224 | 225 | 0.476771 | AGGGAAACATTGTGACCGGT | 59.523 | 50.000 | 6.92 | 6.92 | 0.00 | 5.28 |
225 | 226 | 0.596082 | GGGAAACATTGTGACCGGTG | 59.404 | 55.000 | 14.63 | 0.00 | 0.00 | 4.94 |
266 | 267 | 1.000274 | GTGGCGCAAAATCCTTCAACT | 60.000 | 47.619 | 10.83 | 0.00 | 0.00 | 3.16 |
274 | 275 | 4.201822 | GCAAAATCCTTCAACTAGCTACGG | 60.202 | 45.833 | 0.00 | 0.00 | 0.00 | 4.02 |
288 | 290 | 3.619233 | GCTACGGAAAAGCTTCAAACA | 57.381 | 42.857 | 0.00 | 0.00 | 37.01 | 2.83 |
315 | 317 | 1.470112 | GCTTGAGCTACGAGGAGAACC | 60.470 | 57.143 | 0.00 | 0.00 | 38.21 | 3.62 |
317 | 319 | 4.490859 | GCTTGAGCTACGAGGAGAACCTA | 61.491 | 52.174 | 0.00 | 0.00 | 41.64 | 3.08 |
333 | 335 | 4.124351 | TACGACCAAGGAGCGCCG | 62.124 | 66.667 | 2.29 | 0.00 | 39.96 | 6.46 |
432 | 435 | 3.350163 | CATGGTGGGAAGGGGGCT | 61.350 | 66.667 | 0.00 | 0.00 | 0.00 | 5.19 |
447 | 450 | 1.406887 | GGGGCTCGTGCTGATTTAAGA | 60.407 | 52.381 | 9.61 | 0.00 | 39.59 | 2.10 |
459 | 462 | 8.450964 | CGTGCTGATTTAAGAAAAAGGAAGATA | 58.549 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
489 | 492 | 2.133858 | AAAGAGGGGAAGGGAACAGA | 57.866 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
497 | 508 | 0.250513 | GAAGGGAACAGATGAGCGGT | 59.749 | 55.000 | 0.00 | 0.00 | 0.00 | 5.68 |
502 | 513 | 2.418976 | GGGAACAGATGAGCGGTTAAAC | 59.581 | 50.000 | 0.00 | 0.00 | 34.99 | 2.01 |
519 | 731 | 7.273188 | GGTTAAACCGCACATTTAAAAGATC | 57.727 | 36.000 | 0.00 | 0.00 | 34.24 | 2.75 |
532 | 744 | 5.712217 | TTAAAAGATCTTGTATCACGCGG | 57.288 | 39.130 | 12.47 | 0.00 | 0.00 | 6.46 |
720 | 941 | 7.543172 | ACATAATAAAGTGCATTGCAAAGACTG | 59.457 | 33.333 | 13.94 | 0.00 | 41.47 | 3.51 |
1494 | 1717 | 3.352338 | CTGCCGTGACGAGTACCCC | 62.352 | 68.421 | 6.54 | 0.00 | 0.00 | 4.95 |
1632 | 1855 | 4.652131 | TGGGCCGGCGTTGTCATT | 62.652 | 61.111 | 22.54 | 0.00 | 0.00 | 2.57 |
1671 | 1894 | 4.657814 | AGTTTGGACTCTCTCTCTCTCT | 57.342 | 45.455 | 0.00 | 0.00 | 0.00 | 3.10 |
1672 | 1895 | 4.589908 | AGTTTGGACTCTCTCTCTCTCTC | 58.410 | 47.826 | 0.00 | 0.00 | 0.00 | 3.20 |
1673 | 1896 | 4.289672 | AGTTTGGACTCTCTCTCTCTCTCT | 59.710 | 45.833 | 0.00 | 0.00 | 0.00 | 3.10 |
1674 | 1897 | 4.487714 | TTGGACTCTCTCTCTCTCTCTC | 57.512 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
1675 | 1898 | 3.724478 | TGGACTCTCTCTCTCTCTCTCT | 58.276 | 50.000 | 0.00 | 0.00 | 0.00 | 3.10 |
1676 | 1899 | 3.706594 | TGGACTCTCTCTCTCTCTCTCTC | 59.293 | 52.174 | 0.00 | 0.00 | 0.00 | 3.20 |
1677 | 1900 | 3.964031 | GGACTCTCTCTCTCTCTCTCTCT | 59.036 | 52.174 | 0.00 | 0.00 | 0.00 | 3.10 |
1678 | 1901 | 4.038642 | GGACTCTCTCTCTCTCTCTCTCTC | 59.961 | 54.167 | 0.00 | 0.00 | 0.00 | 3.20 |
1679 | 1902 | 4.877773 | ACTCTCTCTCTCTCTCTCTCTCT | 58.122 | 47.826 | 0.00 | 0.00 | 0.00 | 3.10 |
1680 | 1903 | 4.892934 | ACTCTCTCTCTCTCTCTCTCTCTC | 59.107 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
1681 | 1904 | 5.136068 | TCTCTCTCTCTCTCTCTCTCTCT | 57.864 | 47.826 | 0.00 | 0.00 | 0.00 | 3.10 |
1682 | 1905 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
1683 | 1906 | 5.103728 | TCTCTCTCTCTCTCTCTCTCTCTCT | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
1684 | 1907 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
1685 | 1908 | 5.103728 | TCTCTCTCTCTCTCTCTCTCTCTCT | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
1686 | 1909 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
1687 | 1910 | 5.103728 | TCTCTCTCTCTCTCTCTCTCTCTCT | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
1688 | 1911 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
1689 | 1912 | 5.103728 | TCTCTCTCTCTCTCTCTCTCTCTCT | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
1690 | 1913 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
1691 | 1914 | 5.103728 | TCTCTCTCTCTCTCTCTCTCTCTCT | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
1692 | 1915 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
1693 | 1916 | 5.103728 | TCTCTCTCTCTCTCTCTCTCTCTCT | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
1694 | 1917 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
1788 | 2011 | 9.830975 | ATAGTTCCAAAATAAGTTGCTTTTTGT | 57.169 | 25.926 | 14.27 | 4.56 | 38.20 | 2.83 |
1789 | 2012 | 8.196802 | AGTTCCAAAATAAGTTGCTTTTTGTC | 57.803 | 30.769 | 14.27 | 8.25 | 38.20 | 3.18 |
1790 | 2013 | 8.040727 | AGTTCCAAAATAAGTTGCTTTTTGTCT | 58.959 | 29.630 | 14.27 | 9.53 | 38.20 | 3.41 |
1791 | 2014 | 7.769272 | TCCAAAATAAGTTGCTTTTTGTCTG | 57.231 | 32.000 | 14.27 | 5.27 | 38.20 | 3.51 |
1792 | 2015 | 7.551585 | TCCAAAATAAGTTGCTTTTTGTCTGA | 58.448 | 30.769 | 14.27 | 6.72 | 38.20 | 3.27 |
1861 | 2084 | 2.851263 | TTTGTCCCAGTCGTTGCTAT | 57.149 | 45.000 | 0.00 | 0.00 | 0.00 | 2.97 |
1871 | 2094 | 4.154015 | CCAGTCGTTGCTATTGACATTTGA | 59.846 | 41.667 | 6.35 | 0.00 | 35.09 | 2.69 |
1932 | 2155 | 6.817140 | GCTTACTGTTACTGCTTATGGTAGTT | 59.183 | 38.462 | 0.00 | 0.00 | 41.08 | 2.24 |
2077 | 2300 | 5.738619 | TGTACTACCAGTGATGTGACAAT | 57.261 | 39.130 | 0.00 | 0.00 | 0.00 | 2.71 |
2081 | 2304 | 4.997395 | ACTACCAGTGATGTGACAATTGAC | 59.003 | 41.667 | 13.59 | 6.72 | 0.00 | 3.18 |
2085 | 2308 | 4.154737 | CCAGTGATGTGACAATTGACGATT | 59.845 | 41.667 | 13.59 | 0.00 | 0.00 | 3.34 |
2103 | 2326 | 5.699839 | ACGATTTACATTTGGCTCACTTTC | 58.300 | 37.500 | 0.00 | 0.00 | 0.00 | 2.62 |
2120 | 2343 | 5.415701 | TCACTTTCAATTCATTCTGCCCTAC | 59.584 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2170 | 2393 | 7.693969 | ATTTACCTTCCTTGACAAGAATCTG | 57.306 | 36.000 | 16.99 | 0.00 | 0.00 | 2.90 |
2257 | 2486 | 5.460646 | ACTGTAATTTTCTGAACCATTGCG | 58.539 | 37.500 | 0.00 | 0.00 | 0.00 | 4.85 |
2357 | 2586 | 1.035139 | GGATGGCTTGCATGGGTAAG | 58.965 | 55.000 | 1.34 | 0.00 | 39.45 | 2.34 |
2781 | 3012 | 5.160607 | TCTACGAATGGTCCTTGAATTGT | 57.839 | 39.130 | 0.00 | 0.00 | 0.00 | 2.71 |
2788 | 3019 | 5.920193 | ATGGTCCTTGAATTGTGTATTGG | 57.080 | 39.130 | 0.00 | 0.00 | 0.00 | 3.16 |
2799 | 3030 | 9.679661 | TTGAATTGTGTATTGGTACTGACATAT | 57.320 | 29.630 | 0.00 | 0.00 | 0.00 | 1.78 |
3370 | 3602 | 1.154093 | CCATTCAGCGCTTGTGCAG | 60.154 | 57.895 | 7.50 | 0.00 | 39.64 | 4.41 |
3517 | 3749 | 7.883217 | TCGCTAAAGGATTCTATGGTAGTAAG | 58.117 | 38.462 | 0.00 | 0.00 | 0.00 | 2.34 |
3640 | 3872 | 2.202623 | GCCGGTCAGAGTAGCACG | 60.203 | 66.667 | 1.90 | 0.00 | 0.00 | 5.34 |
3709 | 3941 | 9.710900 | CTAAATTTGAGGTTAAAGAAATGGCTT | 57.289 | 29.630 | 0.00 | 0.00 | 0.00 | 4.35 |
3781 | 4013 | 5.049167 | GCTCTGTTCTTCGATTCATCTGAT | 58.951 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
3871 | 4103 | 5.729229 | TCCTCTGATAACCTTGGTATCCAAA | 59.271 | 40.000 | 2.85 | 0.00 | 43.44 | 3.28 |
3892 | 4124 | 3.837355 | AGAGCAAGTCATGGGAGTTTTT | 58.163 | 40.909 | 0.00 | 0.00 | 34.43 | 1.94 |
3923 | 4158 | 5.163884 | GGTCGTAAAATGCAAGTAAGTCCTC | 60.164 | 44.000 | 0.00 | 0.00 | 0.00 | 3.71 |
3924 | 4159 | 4.933400 | TCGTAAAATGCAAGTAAGTCCTCC | 59.067 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
3925 | 4160 | 4.935808 | CGTAAAATGCAAGTAAGTCCTCCT | 59.064 | 41.667 | 0.00 | 0.00 | 0.00 | 3.69 |
3926 | 4161 | 5.411669 | CGTAAAATGCAAGTAAGTCCTCCTT | 59.588 | 40.000 | 0.00 | 0.00 | 37.17 | 3.36 |
3927 | 4162 | 6.592607 | CGTAAAATGCAAGTAAGTCCTCCTTA | 59.407 | 38.462 | 0.00 | 0.00 | 34.46 | 2.69 |
3928 | 4163 | 7.118680 | CGTAAAATGCAAGTAAGTCCTCCTTAA | 59.881 | 37.037 | 0.00 | 0.00 | 37.39 | 1.85 |
3930 | 4165 | 4.281898 | TGCAAGTAAGTCCTCCTTAACC | 57.718 | 45.455 | 0.00 | 0.00 | 37.39 | 2.85 |
3931 | 4166 | 3.908103 | TGCAAGTAAGTCCTCCTTAACCT | 59.092 | 43.478 | 0.00 | 0.00 | 37.39 | 3.50 |
3932 | 4167 | 4.020485 | TGCAAGTAAGTCCTCCTTAACCTC | 60.020 | 45.833 | 0.00 | 0.00 | 37.39 | 3.85 |
3933 | 4168 | 4.020485 | GCAAGTAAGTCCTCCTTAACCTCA | 60.020 | 45.833 | 0.00 | 0.00 | 37.39 | 3.86 |
3934 | 4169 | 5.725362 | CAAGTAAGTCCTCCTTAACCTCAG | 58.275 | 45.833 | 0.00 | 0.00 | 37.39 | 3.35 |
3935 | 4170 | 5.013258 | AGTAAGTCCTCCTTAACCTCAGT | 57.987 | 43.478 | 0.00 | 0.00 | 37.39 | 3.41 |
3980 | 4216 | 9.995003 | TTTTTCTTCATAATTGTGCACCTTTAT | 57.005 | 25.926 | 15.69 | 14.01 | 0.00 | 1.40 |
4008 | 4244 | 2.079158 | CATGCTCGGATGTTCTGTGTT | 58.921 | 47.619 | 0.00 | 0.00 | 0.00 | 3.32 |
4009 | 4245 | 2.254546 | TGCTCGGATGTTCTGTGTTT | 57.745 | 45.000 | 0.00 | 0.00 | 0.00 | 2.83 |
4030 | 4269 | 2.024176 | AGCATTTACCTAGCCACACG | 57.976 | 50.000 | 0.00 | 0.00 | 0.00 | 4.49 |
4048 | 4287 | 3.576118 | ACACGATATTCTCTGGAGGGATG | 59.424 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
4053 | 4292 | 5.420421 | CGATATTCTCTGGAGGGATGTATGT | 59.580 | 44.000 | 0.00 | 0.00 | 0.00 | 2.29 |
4059 | 4298 | 6.889198 | TCTCTGGAGGGATGTATGTTTTAAG | 58.111 | 40.000 | 0.00 | 0.00 | 0.00 | 1.85 |
4076 | 4315 | 7.035004 | TGTTTTAAGATTATTCATGTGCAGGC | 58.965 | 34.615 | 0.00 | 0.00 | 0.00 | 4.85 |
4096 | 4335 | 6.518369 | GCAGGCCTGTTTCTAGGTTAAAAATT | 60.518 | 38.462 | 32.81 | 0.00 | 40.11 | 1.82 |
4100 | 4339 | 7.255836 | GGCCTGTTTCTAGGTTAAAAATTCTGT | 60.256 | 37.037 | 0.00 | 0.00 | 40.11 | 3.41 |
4109 | 4348 | 7.713764 | AGGTTAAAAATTCTGTCACATTTGC | 57.286 | 32.000 | 0.00 | 0.00 | 0.00 | 3.68 |
4147 | 4386 | 1.813513 | CTGTAGCCAGTGTTCCCTTG | 58.186 | 55.000 | 0.00 | 0.00 | 33.80 | 3.61 |
4162 | 4409 | 4.222124 | TCCCTTGTGGAAATTCTAGAGC | 57.778 | 45.455 | 0.00 | 0.00 | 41.40 | 4.09 |
4167 | 4414 | 5.104735 | CCTTGTGGAAATTCTAGAGCCTAGT | 60.105 | 44.000 | 8.51 | 0.00 | 34.57 | 2.57 |
4172 | 4419 | 5.119694 | GGAAATTCTAGAGCCTAGTTGTGG | 58.880 | 45.833 | 8.51 | 0.00 | 0.00 | 4.17 |
4179 | 4426 | 6.875076 | TCTAGAGCCTAGTTGTGGTATTTTC | 58.125 | 40.000 | 8.51 | 0.00 | 0.00 | 2.29 |
4205 | 4452 | 5.351465 | GGTTCACGATTCTAGATTTTGCTGA | 59.649 | 40.000 | 0.00 | 0.00 | 0.00 | 4.26 |
4225 | 4474 | 5.823209 | TGAAATTCAGATGTAGGTGCATG | 57.177 | 39.130 | 0.00 | 0.00 | 0.00 | 4.06 |
4226 | 4475 | 5.255687 | TGAAATTCAGATGTAGGTGCATGT | 58.744 | 37.500 | 0.00 | 0.00 | 0.00 | 3.21 |
4229 | 4478 | 6.594788 | AATTCAGATGTAGGTGCATGTTTT | 57.405 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
4230 | 4479 | 5.375417 | TTCAGATGTAGGTGCATGTTTTG | 57.625 | 39.130 | 0.00 | 0.00 | 0.00 | 2.44 |
4239 | 4488 | 2.287644 | GGTGCATGTTTTGACAAAAGCC | 59.712 | 45.455 | 13.59 | 4.19 | 0.00 | 4.35 |
4242 | 4491 | 3.132646 | TGCATGTTTTGACAAAAGCCTCT | 59.867 | 39.130 | 13.59 | 0.00 | 0.00 | 3.69 |
4243 | 4492 | 3.492011 | GCATGTTTTGACAAAAGCCTCTG | 59.508 | 43.478 | 13.59 | 8.11 | 0.00 | 3.35 |
4245 | 4494 | 2.159114 | TGTTTTGACAAAAGCCTCTGCC | 60.159 | 45.455 | 13.59 | 0.77 | 38.69 | 4.85 |
4253 | 4502 | 3.903714 | ACAAAAGCCTCTGCCCTAAATTT | 59.096 | 39.130 | 0.00 | 0.00 | 38.69 | 1.82 |
4259 | 4508 | 5.073428 | AGCCTCTGCCCTAAATTTATAAGC | 58.927 | 41.667 | 0.00 | 3.22 | 38.69 | 3.09 |
4262 | 4511 | 5.241728 | CCTCTGCCCTAAATTTATAAGCCAC | 59.758 | 44.000 | 0.00 | 0.00 | 0.00 | 5.01 |
4263 | 4512 | 6.013554 | TCTGCCCTAAATTTATAAGCCACT | 57.986 | 37.500 | 0.00 | 0.00 | 0.00 | 4.00 |
4264 | 4513 | 5.827797 | TCTGCCCTAAATTTATAAGCCACTG | 59.172 | 40.000 | 0.00 | 0.00 | 0.00 | 3.66 |
4265 | 4514 | 4.892934 | TGCCCTAAATTTATAAGCCACTGG | 59.107 | 41.667 | 0.00 | 0.00 | 0.00 | 4.00 |
4266 | 4515 | 4.893524 | GCCCTAAATTTATAAGCCACTGGT | 59.106 | 41.667 | 0.00 | 0.00 | 0.00 | 4.00 |
4267 | 4516 | 5.362717 | GCCCTAAATTTATAAGCCACTGGTT | 59.637 | 40.000 | 0.00 | 0.00 | 35.99 | 3.67 |
4268 | 4517 | 6.127168 | GCCCTAAATTTATAAGCCACTGGTTT | 60.127 | 38.462 | 2.38 | 2.38 | 33.46 | 3.27 |
4269 | 4518 | 7.068962 | GCCCTAAATTTATAAGCCACTGGTTTA | 59.931 | 37.037 | 6.82 | 6.82 | 33.24 | 2.01 |
4270 | 4519 | 9.143155 | CCCTAAATTTATAAGCCACTGGTTTAT | 57.857 | 33.333 | 18.21 | 18.21 | 40.98 | 1.40 |
4271 | 4520 | 9.965824 | CCTAAATTTATAAGCCACTGGTTTATG | 57.034 | 33.333 | 21.57 | 7.73 | 39.00 | 1.90 |
4283 | 4532 | 9.695155 | AGCCACTGGTTTATGTATTTAGTTAAT | 57.305 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
4312 | 4561 | 2.975489 | AGCACTATCTTATCCCCAGTGG | 59.025 | 50.000 | 0.63 | 0.63 | 37.63 | 4.00 |
4317 | 4566 | 6.465894 | GCACTATCTTATCCCCAGTGGTTATT | 60.466 | 42.308 | 8.74 | 0.00 | 37.63 | 1.40 |
4334 | 4583 | 8.755028 | AGTGGTTATTTGTTTTTGTAGGACTTT | 58.245 | 29.630 | 0.00 | 0.00 | 0.00 | 2.66 |
4376 | 4627 | 6.869913 | ACTAAATCATCATTTGCACAACCTTG | 59.130 | 34.615 | 0.00 | 0.00 | 33.95 | 3.61 |
4390 | 4641 | 4.761739 | CACAACCTTGTAATGTGATCACCT | 59.238 | 41.667 | 22.85 | 10.76 | 45.61 | 4.00 |
4391 | 4642 | 4.761739 | ACAACCTTGTAATGTGATCACCTG | 59.238 | 41.667 | 22.85 | 3.16 | 40.16 | 4.00 |
4392 | 4643 | 4.908601 | ACCTTGTAATGTGATCACCTGA | 57.091 | 40.909 | 22.85 | 3.52 | 0.00 | 3.86 |
4394 | 4645 | 5.003804 | ACCTTGTAATGTGATCACCTGAAC | 58.996 | 41.667 | 22.85 | 15.12 | 0.00 | 3.18 |
4396 | 4647 | 5.649395 | CCTTGTAATGTGATCACCTGAACAT | 59.351 | 40.000 | 22.85 | 5.92 | 34.79 | 2.71 |
4407 | 4658 | 8.180267 | GTGATCACCTGAACATTATTTTCTCTG | 58.820 | 37.037 | 15.31 | 0.00 | 0.00 | 3.35 |
4414 | 4665 | 5.044476 | TGAACATTATTTTCTCTGGCCCCTA | 60.044 | 40.000 | 0.00 | 0.00 | 0.00 | 3.53 |
4415 | 4666 | 5.466127 | ACATTATTTTCTCTGGCCCCTAA | 57.534 | 39.130 | 0.00 | 0.00 | 0.00 | 2.69 |
4427 | 4678 | 5.646215 | TCTGGCCCCTAAGTTTAAATTTCA | 58.354 | 37.500 | 0.00 | 0.00 | 0.00 | 2.69 |
4502 | 4753 | 2.670934 | CCTGGACAGTGGCTGCAC | 60.671 | 66.667 | 0.50 | 0.00 | 34.37 | 4.57 |
4546 | 4797 | 5.815233 | ATCTCTTGTTGGACTTCTTCTCA | 57.185 | 39.130 | 0.00 | 0.00 | 0.00 | 3.27 |
4576 | 4827 | 0.535335 | GAGGTCCATTGTACGGCTCA | 59.465 | 55.000 | 0.00 | 0.00 | 0.00 | 4.26 |
4577 | 4828 | 0.981183 | AGGTCCATTGTACGGCTCAA | 59.019 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
4586 | 4837 | 1.275010 | TGTACGGCTCAATTCTCTGCA | 59.725 | 47.619 | 0.00 | 0.00 | 0.00 | 4.41 |
4639 | 4890 | 2.270205 | CTCATTCTGCGGGGCACT | 59.730 | 61.111 | 0.00 | 0.00 | 33.79 | 4.40 |
4660 | 4911 | 5.651139 | CACTGAAATCTCCAACCAGATGATT | 59.349 | 40.000 | 0.00 | 0.00 | 33.13 | 2.57 |
4663 | 4914 | 6.720309 | TGAAATCTCCAACCAGATGATTGTA | 58.280 | 36.000 | 0.00 | 0.00 | 33.13 | 2.41 |
4666 | 4917 | 3.519107 | TCTCCAACCAGATGATTGTAGCA | 59.481 | 43.478 | 0.00 | 0.00 | 0.00 | 3.49 |
4678 | 4929 | 4.754322 | TGATTGTAGCAATACGCAAGAGA | 58.246 | 39.130 | 0.00 | 0.00 | 46.13 | 3.10 |
4708 | 4959 | 4.808364 | TGACAGCTGTAACAAAATTTTGCC | 59.192 | 37.500 | 26.94 | 16.80 | 41.79 | 4.52 |
4734 | 4985 | 7.711339 | CCTCTTATTACACAACCATAACCTCTC | 59.289 | 40.741 | 0.00 | 0.00 | 0.00 | 3.20 |
4735 | 4986 | 8.141298 | TCTTATTACACAACCATAACCTCTCA | 57.859 | 34.615 | 0.00 | 0.00 | 0.00 | 3.27 |
4772 | 5023 | 2.900546 | TCTCTTCCAAGAACAGAGACCC | 59.099 | 50.000 | 0.00 | 0.00 | 38.51 | 4.46 |
4773 | 5024 | 2.634940 | CTCTTCCAAGAACAGAGACCCA | 59.365 | 50.000 | 0.00 | 0.00 | 36.88 | 4.51 |
4775 | 5026 | 2.398754 | TCCAAGAACAGAGACCCAGA | 57.601 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
4784 | 5035 | 2.182827 | CAGAGACCCAGAGATCCACAA | 58.817 | 52.381 | 0.00 | 0.00 | 0.00 | 3.33 |
4811 | 5063 | 5.640732 | ACAGTGACATTGAGTTGTTGAAAC | 58.359 | 37.500 | 4.78 | 0.00 | 0.00 | 2.78 |
4817 | 5069 | 4.949856 | ACATTGAGTTGTTGAAACAGACCT | 59.050 | 37.500 | 0.00 | 0.00 | 40.50 | 3.85 |
4823 | 5075 | 3.358111 | TGTTGAAACAGACCTGAACCA | 57.642 | 42.857 | 3.76 | 0.00 | 34.30 | 3.67 |
4846 | 5098 | 4.278419 | ACTGTTGAATTTGGTTGTAGCTCC | 59.722 | 41.667 | 0.00 | 0.00 | 0.00 | 4.70 |
4847 | 5099 | 3.572255 | TGTTGAATTTGGTTGTAGCTCCC | 59.428 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
4853 | 5105 | 1.729586 | TGGTTGTAGCTCCCTGACTT | 58.270 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
4857 | 5109 | 2.300437 | GTTGTAGCTCCCTGACTTGTCT | 59.700 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
4858 | 5110 | 3.451402 | TGTAGCTCCCTGACTTGTCTA | 57.549 | 47.619 | 0.00 | 0.00 | 0.00 | 2.59 |
4866 | 5118 | 2.559931 | CCCTGACTTGTCTAGAAGGGGA | 60.560 | 54.545 | 14.90 | 0.00 | 42.72 | 4.81 |
4869 | 5121 | 3.699038 | CTGACTTGTCTAGAAGGGGAGAG | 59.301 | 52.174 | 0.00 | 0.00 | 0.00 | 3.20 |
5025 | 5277 | 8.948631 | TCTTATCCTTCATCTGTACATGAAAC | 57.051 | 34.615 | 11.89 | 0.00 | 41.28 | 2.78 |
5028 | 5280 | 6.065976 | TCCTTCATCTGTACATGAAACCAT | 57.934 | 37.500 | 11.89 | 0.00 | 41.28 | 3.55 |
5036 | 5288 | 9.726232 | CATCTGTACATGAAACCATTTTCTATG | 57.274 | 33.333 | 0.00 | 4.24 | 41.64 | 2.23 |
5085 | 5337 | 6.403333 | TCTGACTATTGTTTGTACGATTGC | 57.597 | 37.500 | 0.00 | 0.00 | 30.81 | 3.56 |
5137 | 5389 | 5.067413 | CGTCGGTGCTGGGAATATACTATAT | 59.933 | 44.000 | 0.00 | 0.00 | 0.00 | 0.86 |
5219 | 5471 | 5.610338 | GCTTTTGCTGTGCGAAAATAAGAAC | 60.610 | 40.000 | 6.45 | 0.00 | 40.76 | 3.01 |
5269 | 6969 | 1.066430 | TCCTGAAACTGTCATACCGCC | 60.066 | 52.381 | 0.00 | 0.00 | 35.07 | 6.13 |
5300 | 7003 | 7.035612 | GGAGGATGGTGATGAACAAAATAAAC | 58.964 | 38.462 | 0.00 | 0.00 | 0.00 | 2.01 |
5304 | 7007 | 4.979197 | TGGTGATGAACAAAATAAACACGC | 59.021 | 37.500 | 0.00 | 0.00 | 0.00 | 5.34 |
5308 | 7011 | 7.394872 | GTGATGAACAAAATAAACACGCAAAA | 58.605 | 30.769 | 0.00 | 0.00 | 0.00 | 2.44 |
5313 | 7016 | 6.576551 | ACAAAATAAACACGCAAAAATCGT | 57.423 | 29.167 | 0.00 | 0.00 | 41.28 | 3.73 |
5407 | 7118 | 2.203401 | CTACGAGGACGGTCTCTGTAG | 58.797 | 57.143 | 8.23 | 12.39 | 44.46 | 2.74 |
5435 | 7146 | 1.208358 | CACTGATGTTGCGTGCCTG | 59.792 | 57.895 | 0.00 | 0.00 | 0.00 | 4.85 |
5489 | 7200 | 0.463474 | GGCCATCTCCTGTCAGCTTC | 60.463 | 60.000 | 0.00 | 0.00 | 0.00 | 3.86 |
5495 | 7206 | 2.881734 | TCTCCTGTCAGCTTCAGAGAA | 58.118 | 47.619 | 14.92 | 2.72 | 35.20 | 2.87 |
5520 | 7231 | 1.610522 | GAACCTGCTGTTGTCTGCATT | 59.389 | 47.619 | 0.00 | 0.00 | 44.85 | 3.56 |
5526 | 7237 | 4.637534 | CCTGCTGTTGTCTGCATTAGTAAT | 59.362 | 41.667 | 0.00 | 0.00 | 44.85 | 1.89 |
5527 | 7238 | 5.448225 | CCTGCTGTTGTCTGCATTAGTAATG | 60.448 | 44.000 | 17.09 | 17.09 | 44.85 | 1.90 |
5528 | 7239 | 5.003160 | TGCTGTTGTCTGCATTAGTAATGT | 58.997 | 37.500 | 21.15 | 0.00 | 42.06 | 2.71 |
5529 | 7240 | 5.122239 | TGCTGTTGTCTGCATTAGTAATGTC | 59.878 | 40.000 | 21.15 | 14.71 | 42.06 | 3.06 |
5530 | 7241 | 5.352569 | GCTGTTGTCTGCATTAGTAATGTCT | 59.647 | 40.000 | 21.15 | 0.00 | 41.01 | 3.41 |
5531 | 7242 | 6.674037 | GCTGTTGTCTGCATTAGTAATGTCTG | 60.674 | 42.308 | 21.15 | 16.56 | 41.01 | 3.51 |
5532 | 7243 | 5.122239 | TGTTGTCTGCATTAGTAATGTCTGC | 59.878 | 40.000 | 21.15 | 11.12 | 41.01 | 4.26 |
5533 | 7244 | 4.831107 | TGTCTGCATTAGTAATGTCTGCA | 58.169 | 39.130 | 21.15 | 14.63 | 41.01 | 4.41 |
5534 | 7245 | 5.430886 | TGTCTGCATTAGTAATGTCTGCAT | 58.569 | 37.500 | 21.15 | 0.00 | 41.55 | 3.96 |
5535 | 7246 | 5.525012 | TGTCTGCATTAGTAATGTCTGCATC | 59.475 | 40.000 | 21.15 | 12.12 | 41.55 | 3.91 |
5536 | 7247 | 5.525012 | GTCTGCATTAGTAATGTCTGCATCA | 59.475 | 40.000 | 21.15 | 9.83 | 41.55 | 3.07 |
5537 | 7248 | 5.756833 | TCTGCATTAGTAATGTCTGCATCAG | 59.243 | 40.000 | 21.15 | 17.02 | 41.55 | 2.90 |
5538 | 7249 | 5.430886 | TGCATTAGTAATGTCTGCATCAGT | 58.569 | 37.500 | 21.15 | 0.00 | 41.01 | 3.41 |
5539 | 7250 | 6.581712 | TGCATTAGTAATGTCTGCATCAGTA | 58.418 | 36.000 | 21.15 | 0.00 | 41.01 | 2.74 |
5540 | 7251 | 7.047271 | TGCATTAGTAATGTCTGCATCAGTAA | 58.953 | 34.615 | 21.15 | 0.00 | 41.01 | 2.24 |
5541 | 7252 | 7.716560 | TGCATTAGTAATGTCTGCATCAGTAAT | 59.283 | 33.333 | 21.15 | 0.00 | 41.01 | 1.89 |
5581 | 7292 | 4.160329 | AGTGGACCATGTTCTCTCTAACA | 58.840 | 43.478 | 0.00 | 0.00 | 43.16 | 2.41 |
5603 | 7316 | 0.872021 | GGTGATAGCGTTCTCTGCGG | 60.872 | 60.000 | 0.00 | 0.00 | 37.44 | 5.69 |
5653 | 7366 | 2.912956 | ACCAGCTAGAGGATTCCAAACA | 59.087 | 45.455 | 5.29 | 0.00 | 0.00 | 2.83 |
5654 | 7367 | 3.525199 | ACCAGCTAGAGGATTCCAAACAT | 59.475 | 43.478 | 5.29 | 0.00 | 0.00 | 2.71 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
41 | 42 | 0.233848 | GCAACCGTCGTTACCAGTTG | 59.766 | 55.000 | 5.70 | 5.70 | 38.50 | 3.16 |
42 | 43 | 0.105408 | AGCAACCGTCGTTACCAGTT | 59.895 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
44 | 45 | 1.336148 | TGTAGCAACCGTCGTTACCAG | 60.336 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
48 | 49 | 1.068281 | TGGTTGTAGCAACCGTCGTTA | 59.932 | 47.619 | 21.46 | 4.88 | 43.15 | 3.18 |
55 | 56 | 3.508744 | CCATGAATGGTTGTAGCAACC | 57.491 | 47.619 | 20.54 | 20.54 | 43.05 | 3.77 |
95 | 96 | 2.196925 | AAAATTGTCGGTGGCGGCA | 61.197 | 52.632 | 7.97 | 7.97 | 0.00 | 5.69 |
115 | 116 | 2.031919 | TGCCAAAGACGGTCGCAT | 59.968 | 55.556 | 1.89 | 0.00 | 0.00 | 4.73 |
119 | 120 | 1.021968 | AACAACTGCCAAAGACGGTC | 58.978 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
130 | 131 | 0.388907 | TCGGCGGTAGTAACAACTGC | 60.389 | 55.000 | 7.21 | 0.00 | 46.42 | 4.40 |
133 | 134 | 0.109781 | TCGTCGGCGGTAGTAACAAC | 60.110 | 55.000 | 10.62 | 0.00 | 38.89 | 3.32 |
146 | 147 | 1.127951 | GGTTGTAGCAATTGTCGTCGG | 59.872 | 52.381 | 7.40 | 0.00 | 0.00 | 4.79 |
196 | 197 | 3.674753 | CACAATGTTTCCCTGATTTTCGC | 59.325 | 43.478 | 0.00 | 0.00 | 0.00 | 4.70 |
199 | 200 | 4.261994 | CGGTCACAATGTTTCCCTGATTTT | 60.262 | 41.667 | 0.00 | 0.00 | 0.00 | 1.82 |
223 | 224 | 3.609853 | TGTCATAGCTTCCCATGAACAC | 58.390 | 45.455 | 0.00 | 0.00 | 33.15 | 3.32 |
224 | 225 | 3.998913 | TGTCATAGCTTCCCATGAACA | 57.001 | 42.857 | 0.00 | 0.00 | 33.15 | 3.18 |
225 | 226 | 4.036027 | CACATGTCATAGCTTCCCATGAAC | 59.964 | 45.833 | 17.10 | 6.26 | 37.07 | 3.18 |
274 | 275 | 2.202295 | TGCGGTGTTTGAAGCTTTTC | 57.798 | 45.000 | 0.00 | 0.00 | 0.00 | 2.29 |
315 | 317 | 2.202756 | GGCGCTCCTTGGTCGTAG | 60.203 | 66.667 | 7.64 | 0.00 | 0.00 | 3.51 |
324 | 326 | 4.514577 | CGATTGGTCGGCGCTCCT | 62.515 | 66.667 | 7.64 | 3.24 | 44.00 | 3.69 |
366 | 368 | 3.299977 | CTTGCTGCCCTGCTTGCA | 61.300 | 61.111 | 0.00 | 0.00 | 37.09 | 4.08 |
411 | 414 | 2.438434 | CCCTTCCCACCATGCGTC | 60.438 | 66.667 | 0.00 | 0.00 | 0.00 | 5.19 |
412 | 415 | 4.047125 | CCCCTTCCCACCATGCGT | 62.047 | 66.667 | 0.00 | 0.00 | 0.00 | 5.24 |
416 | 419 | 3.023735 | GAGCCCCCTTCCCACCAT | 61.024 | 66.667 | 0.00 | 0.00 | 0.00 | 3.55 |
432 | 435 | 6.485313 | TCTTCCTTTTTCTTAAATCAGCACGA | 59.515 | 34.615 | 0.00 | 0.00 | 0.00 | 4.35 |
475 | 478 | 0.106967 | GCTCATCTGTTCCCTTCCCC | 60.107 | 60.000 | 0.00 | 0.00 | 0.00 | 4.81 |
476 | 479 | 0.462759 | CGCTCATCTGTTCCCTTCCC | 60.463 | 60.000 | 0.00 | 0.00 | 0.00 | 3.97 |
477 | 480 | 0.462759 | CCGCTCATCTGTTCCCTTCC | 60.463 | 60.000 | 0.00 | 0.00 | 0.00 | 3.46 |
478 | 481 | 0.250513 | ACCGCTCATCTGTTCCCTTC | 59.749 | 55.000 | 0.00 | 0.00 | 0.00 | 3.46 |
482 | 485 | 2.418976 | GGTTTAACCGCTCATCTGTTCC | 59.581 | 50.000 | 0.00 | 0.00 | 0.00 | 3.62 |
483 | 486 | 3.741805 | GGTTTAACCGCTCATCTGTTC | 57.258 | 47.619 | 0.00 | 0.00 | 0.00 | 3.18 |
497 | 508 | 8.138712 | ACAAGATCTTTTAAATGTGCGGTTTAA | 58.861 | 29.630 | 4.86 | 0.00 | 31.26 | 1.52 |
502 | 513 | 7.429340 | GTGATACAAGATCTTTTAAATGTGCGG | 59.571 | 37.037 | 4.86 | 0.00 | 0.00 | 5.69 |
509 | 520 | 5.640357 | ACCGCGTGATACAAGATCTTTTAAA | 59.360 | 36.000 | 4.86 | 0.00 | 0.00 | 1.52 |
511 | 522 | 4.565166 | CACCGCGTGATACAAGATCTTTTA | 59.435 | 41.667 | 4.86 | 4.30 | 35.23 | 1.52 |
519 | 731 | 0.992072 | CACTCACCGCGTGATACAAG | 59.008 | 55.000 | 4.92 | 0.00 | 41.94 | 3.16 |
532 | 744 | 2.359230 | GCTGGTGGCCTCACTCAC | 60.359 | 66.667 | 3.32 | 0.00 | 43.17 | 3.51 |
625 | 839 | 6.298441 | TGATCCATGTGACTCTTGTATGAA | 57.702 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
690 | 910 | 7.758613 | TTGCAATGCACTTTATTATGTCATG | 57.241 | 32.000 | 7.72 | 0.00 | 38.71 | 3.07 |
844 | 1066 | 6.183360 | GGACCCTTTTATAGTAGTACGCTTGA | 60.183 | 42.308 | 0.00 | 0.00 | 0.00 | 3.02 |
1413 | 1636 | 3.073735 | AGGAGCTGCACGAGGAGG | 61.074 | 66.667 | 8.35 | 0.00 | 33.18 | 4.30 |
1470 | 1693 | 2.673341 | TCGTCACGGCAGAGCTCT | 60.673 | 61.111 | 11.45 | 11.45 | 0.00 | 4.09 |
1482 | 1705 | 1.676635 | CCAGTCGGGGTACTCGTCA | 60.677 | 63.158 | 8.49 | 0.00 | 0.00 | 4.35 |
1632 | 1855 | 1.534476 | TCACCAGTCCAAGGCGGTA | 60.534 | 57.895 | 0.00 | 0.00 | 35.57 | 4.02 |
1667 | 1890 | 5.103728 | AGAGAGAGAGAGAGAGAGAGAGAGA | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
1668 | 1891 | 5.139727 | AGAGAGAGAGAGAGAGAGAGAGAG | 58.860 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
1669 | 1892 | 5.103728 | AGAGAGAGAGAGAGAGAGAGAGAGA | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
1670 | 1893 | 5.139727 | AGAGAGAGAGAGAGAGAGAGAGAG | 58.860 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
1671 | 1894 | 5.136068 | AGAGAGAGAGAGAGAGAGAGAGA | 57.864 | 47.826 | 0.00 | 0.00 | 0.00 | 3.10 |
1672 | 1895 | 4.892345 | TGAGAGAGAGAGAGAGAGAGAGAG | 59.108 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
1673 | 1896 | 4.871822 | TGAGAGAGAGAGAGAGAGAGAGA | 58.128 | 47.826 | 0.00 | 0.00 | 0.00 | 3.10 |
1674 | 1897 | 5.804944 | ATGAGAGAGAGAGAGAGAGAGAG | 57.195 | 47.826 | 0.00 | 0.00 | 0.00 | 3.20 |
1675 | 1898 | 5.163269 | CCAATGAGAGAGAGAGAGAGAGAGA | 60.163 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
1676 | 1899 | 5.061853 | CCAATGAGAGAGAGAGAGAGAGAG | 58.938 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
1677 | 1900 | 4.686944 | GCCAATGAGAGAGAGAGAGAGAGA | 60.687 | 50.000 | 0.00 | 0.00 | 0.00 | 3.10 |
1678 | 1901 | 3.567164 | GCCAATGAGAGAGAGAGAGAGAG | 59.433 | 52.174 | 0.00 | 0.00 | 0.00 | 3.20 |
1679 | 1902 | 3.202818 | AGCCAATGAGAGAGAGAGAGAGA | 59.797 | 47.826 | 0.00 | 0.00 | 0.00 | 3.10 |
1680 | 1903 | 3.317149 | CAGCCAATGAGAGAGAGAGAGAG | 59.683 | 52.174 | 0.00 | 0.00 | 0.00 | 3.20 |
1681 | 1904 | 3.289836 | CAGCCAATGAGAGAGAGAGAGA | 58.710 | 50.000 | 0.00 | 0.00 | 0.00 | 3.10 |
1682 | 1905 | 3.025978 | ACAGCCAATGAGAGAGAGAGAG | 58.974 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
1683 | 1906 | 3.098774 | ACAGCCAATGAGAGAGAGAGA | 57.901 | 47.619 | 0.00 | 0.00 | 0.00 | 3.10 |
1684 | 1907 | 3.891422 | AACAGCCAATGAGAGAGAGAG | 57.109 | 47.619 | 0.00 | 0.00 | 0.00 | 3.20 |
1685 | 1908 | 4.774726 | ACTAAACAGCCAATGAGAGAGAGA | 59.225 | 41.667 | 0.00 | 0.00 | 0.00 | 3.10 |
1686 | 1909 | 5.083533 | ACTAAACAGCCAATGAGAGAGAG | 57.916 | 43.478 | 0.00 | 0.00 | 0.00 | 3.20 |
1687 | 1910 | 5.489792 | AACTAAACAGCCAATGAGAGAGA | 57.510 | 39.130 | 0.00 | 0.00 | 0.00 | 3.10 |
1688 | 1911 | 6.566197 | AAAACTAAACAGCCAATGAGAGAG | 57.434 | 37.500 | 0.00 | 0.00 | 0.00 | 3.20 |
1689 | 1912 | 6.959639 | AAAAACTAAACAGCCAATGAGAGA | 57.040 | 33.333 | 0.00 | 0.00 | 0.00 | 3.10 |
1780 | 2003 | 6.309737 | CCTAATGCTGATTTCAGACAAAAAGC | 59.690 | 38.462 | 11.70 | 0.00 | 46.59 | 3.51 |
1787 | 2010 | 6.705863 | AAATCCCTAATGCTGATTTCAGAC | 57.294 | 37.500 | 11.70 | 3.84 | 46.59 | 3.51 |
1788 | 2011 | 7.722949 | AAAAATCCCTAATGCTGATTTCAGA | 57.277 | 32.000 | 11.70 | 0.00 | 46.59 | 3.27 |
1813 | 2036 | 2.894763 | TCCGGTTTCTCGTCTTTTGA | 57.105 | 45.000 | 0.00 | 0.00 | 0.00 | 2.69 |
1821 | 2044 | 4.483476 | AAATCACTTTTCCGGTTTCTCG | 57.517 | 40.909 | 0.00 | 0.00 | 0.00 | 4.04 |
1861 | 2084 | 6.601613 | ACACTAAAACCTCACTCAAATGTCAA | 59.398 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
1871 | 2094 | 7.233757 | ACTGAGATCTAACACTAAAACCTCACT | 59.766 | 37.037 | 0.00 | 0.00 | 0.00 | 3.41 |
1932 | 2155 | 4.651778 | CTGGGTCCTCAAACTAATGTGAA | 58.348 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
2019 | 2242 | 8.530804 | AAAAGATCAAGCATTCCTATAGCTTT | 57.469 | 30.769 | 0.00 | 0.00 | 45.57 | 3.51 |
2077 | 2300 | 4.759693 | AGTGAGCCAAATGTAAATCGTCAA | 59.240 | 37.500 | 0.00 | 0.00 | 0.00 | 3.18 |
2081 | 2304 | 5.698832 | TGAAAGTGAGCCAAATGTAAATCG | 58.301 | 37.500 | 0.00 | 0.00 | 0.00 | 3.34 |
2085 | 2308 | 7.048629 | TGAATTGAAAGTGAGCCAAATGTAA | 57.951 | 32.000 | 0.00 | 0.00 | 0.00 | 2.41 |
2103 | 2326 | 3.797039 | TCTCGTAGGGCAGAATGAATTG | 58.203 | 45.455 | 0.00 | 0.00 | 39.69 | 2.32 |
2120 | 2343 | 2.101415 | TGTCTGCAACCCTCATATCTCG | 59.899 | 50.000 | 0.00 | 0.00 | 0.00 | 4.04 |
2232 | 2461 | 7.081349 | CGCAATGGTTCAGAAAATTACAGTTA | 58.919 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
2257 | 2486 | 6.625873 | ACAAACTTCTCTGATCTTTTCACC | 57.374 | 37.500 | 0.00 | 0.00 | 0.00 | 4.02 |
2357 | 2586 | 3.592059 | TGATTACTACTTGGTTCGGTGC | 58.408 | 45.455 | 0.00 | 0.00 | 0.00 | 5.01 |
2392 | 2621 | 1.485066 | CGTCCCCAGTAAGTTAGCCAT | 59.515 | 52.381 | 0.00 | 0.00 | 0.00 | 4.40 |
2567 | 2797 | 4.541085 | TGTCAGCAGCATTAATTCATCG | 57.459 | 40.909 | 0.00 | 0.00 | 0.00 | 3.84 |
2753 | 2984 | 5.419542 | TCAAGGACCATTCGTAGAATTCTG | 58.580 | 41.667 | 18.47 | 2.20 | 45.90 | 3.02 |
2822 | 3054 | 8.025445 | ACAAATGAATAGTTCTGAATTGTGAGC | 58.975 | 33.333 | 0.00 | 0.00 | 0.00 | 4.26 |
2892 | 3124 | 2.117156 | CATCCAGGCCCAAAGCGAG | 61.117 | 63.158 | 0.00 | 0.00 | 45.17 | 5.03 |
3170 | 3402 | 7.180229 | TCTGTGAGATCCTTACCAATTAACAGA | 59.820 | 37.037 | 0.00 | 0.00 | 37.42 | 3.41 |
3370 | 3602 | 5.952526 | TTTTTGGGTCTATTTTCCTCGAC | 57.047 | 39.130 | 0.00 | 0.00 | 0.00 | 4.20 |
3445 | 3677 | 4.256110 | TCATGAAGGATATAGCCAATGCG | 58.744 | 43.478 | 10.21 | 0.00 | 44.33 | 4.73 |
3517 | 3749 | 2.280186 | CCGATACTGCCGGCTTCC | 60.280 | 66.667 | 29.70 | 11.13 | 40.54 | 3.46 |
3640 | 3872 | 3.802685 | GTCCAGCATACGTTCCTGTTATC | 59.197 | 47.826 | 0.00 | 0.00 | 0.00 | 1.75 |
3709 | 3941 | 1.833630 | CTTCTGGTGATCAGTGCCCTA | 59.166 | 52.381 | 0.00 | 0.00 | 43.76 | 3.53 |
3715 | 3947 | 2.376808 | CGAAGCTTCTGGTGATCAGT | 57.623 | 50.000 | 23.50 | 0.00 | 43.76 | 3.41 |
3781 | 4013 | 5.181811 | CCACTCATTTAGAACATCAAGTGCA | 59.818 | 40.000 | 0.00 | 0.00 | 33.30 | 4.57 |
3871 | 4103 | 3.515602 | AAAACTCCCATGACTTGCTCT | 57.484 | 42.857 | 0.00 | 0.00 | 0.00 | 4.09 |
3892 | 4124 | 9.309516 | CTTACTTGCATTTTACGACCTATTCTA | 57.690 | 33.333 | 0.00 | 0.00 | 0.00 | 2.10 |
3923 | 4158 | 7.189079 | AGAAGGATTAGAACTGAGGTTAAGG | 57.811 | 40.000 | 0.00 | 0.00 | 35.58 | 2.69 |
3924 | 4159 | 7.125053 | AGGAGAAGGATTAGAACTGAGGTTAAG | 59.875 | 40.741 | 0.00 | 0.00 | 35.58 | 1.85 |
3925 | 4160 | 6.960542 | AGGAGAAGGATTAGAACTGAGGTTAA | 59.039 | 38.462 | 0.00 | 0.00 | 35.58 | 2.01 |
3926 | 4161 | 6.381420 | CAGGAGAAGGATTAGAACTGAGGTTA | 59.619 | 42.308 | 0.00 | 0.00 | 35.58 | 2.85 |
3927 | 4162 | 5.188751 | CAGGAGAAGGATTAGAACTGAGGTT | 59.811 | 44.000 | 0.00 | 0.00 | 38.52 | 3.50 |
3928 | 4163 | 4.714308 | CAGGAGAAGGATTAGAACTGAGGT | 59.286 | 45.833 | 0.00 | 0.00 | 0.00 | 3.85 |
3930 | 4165 | 5.930837 | ACAGGAGAAGGATTAGAACTGAG | 57.069 | 43.478 | 0.00 | 0.00 | 0.00 | 3.35 |
3931 | 4166 | 6.688073 | AAACAGGAGAAGGATTAGAACTGA | 57.312 | 37.500 | 0.00 | 0.00 | 0.00 | 3.41 |
3932 | 4167 | 7.751768 | AAAAACAGGAGAAGGATTAGAACTG | 57.248 | 36.000 | 0.00 | 0.00 | 0.00 | 3.16 |
3986 | 4222 | 0.745845 | ACAGAACATCCGAGCATGCC | 60.746 | 55.000 | 15.66 | 4.99 | 0.00 | 4.40 |
4008 | 4244 | 3.936453 | CGTGTGGCTAGGTAAATGCTTAA | 59.064 | 43.478 | 0.00 | 0.00 | 0.00 | 1.85 |
4009 | 4245 | 3.196039 | TCGTGTGGCTAGGTAAATGCTTA | 59.804 | 43.478 | 0.00 | 0.00 | 0.00 | 3.09 |
4030 | 4269 | 6.865834 | ACATACATCCCTCCAGAGAATATC | 57.134 | 41.667 | 0.00 | 0.00 | 0.00 | 1.63 |
4053 | 4292 | 6.380846 | AGGCCTGCACATGAATAATCTTAAAA | 59.619 | 34.615 | 3.11 | 0.00 | 0.00 | 1.52 |
4059 | 4298 | 2.954318 | ACAGGCCTGCACATGAATAATC | 59.046 | 45.455 | 33.06 | 0.00 | 0.00 | 1.75 |
4074 | 4313 | 7.090808 | CAGAATTTTTAACCTAGAAACAGGCC | 58.909 | 38.462 | 0.00 | 0.00 | 39.53 | 5.19 |
4076 | 4315 | 8.846211 | TGACAGAATTTTTAACCTAGAAACAGG | 58.154 | 33.333 | 0.00 | 0.00 | 41.87 | 4.00 |
4096 | 4335 | 3.797451 | TTTGCAAGCAAATGTGACAGA | 57.203 | 38.095 | 15.59 | 0.00 | 40.51 | 3.41 |
4133 | 4372 | 1.150536 | TCCACAAGGGAACACTGGC | 59.849 | 57.895 | 0.00 | 0.00 | 44.80 | 4.85 |
4147 | 4386 | 5.582665 | CACAACTAGGCTCTAGAATTTCCAC | 59.417 | 44.000 | 14.03 | 0.00 | 0.00 | 4.02 |
4156 | 4403 | 6.758886 | CAGAAAATACCACAACTAGGCTCTAG | 59.241 | 42.308 | 0.00 | 7.46 | 0.00 | 2.43 |
4162 | 4409 | 6.001460 | TGAACCAGAAAATACCACAACTAGG | 58.999 | 40.000 | 0.00 | 0.00 | 0.00 | 3.02 |
4167 | 4414 | 4.452825 | TCGTGAACCAGAAAATACCACAA | 58.547 | 39.130 | 0.00 | 0.00 | 0.00 | 3.33 |
4172 | 4419 | 8.649973 | ATCTAGAATCGTGAACCAGAAAATAC | 57.350 | 34.615 | 0.00 | 0.00 | 0.00 | 1.89 |
4179 | 4426 | 5.352569 | AGCAAAATCTAGAATCGTGAACCAG | 59.647 | 40.000 | 0.00 | 0.00 | 0.00 | 4.00 |
4205 | 4452 | 6.594788 | AAACATGCACCTACATCTGAATTT | 57.405 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
4213 | 4462 | 5.528043 | TTTGTCAAAACATGCACCTACAT | 57.472 | 34.783 | 0.00 | 0.00 | 34.73 | 2.29 |
4215 | 4464 | 4.209080 | GCTTTTGTCAAAACATGCACCTAC | 59.791 | 41.667 | 6.65 | 0.00 | 34.73 | 3.18 |
4225 | 4474 | 2.473816 | GGCAGAGGCTTTTGTCAAAAC | 58.526 | 47.619 | 6.65 | 4.74 | 40.87 | 2.43 |
4226 | 4475 | 1.412343 | GGGCAGAGGCTTTTGTCAAAA | 59.588 | 47.619 | 10.27 | 10.27 | 40.87 | 2.44 |
4229 | 4478 | 1.064003 | TAGGGCAGAGGCTTTTGTCA | 58.936 | 50.000 | 6.84 | 0.00 | 40.87 | 3.58 |
4230 | 4479 | 2.200373 | TTAGGGCAGAGGCTTTTGTC | 57.800 | 50.000 | 0.00 | 0.00 | 40.87 | 3.18 |
4239 | 4488 | 6.016777 | CAGTGGCTTATAAATTTAGGGCAGAG | 60.017 | 42.308 | 18.18 | 12.77 | 0.00 | 3.35 |
4242 | 4491 | 4.892934 | CCAGTGGCTTATAAATTTAGGGCA | 59.107 | 41.667 | 15.56 | 15.56 | 0.00 | 5.36 |
4243 | 4492 | 4.893524 | ACCAGTGGCTTATAAATTTAGGGC | 59.106 | 41.667 | 9.78 | 9.02 | 0.00 | 5.19 |
4245 | 4494 | 9.965824 | CATAAACCAGTGGCTTATAAATTTAGG | 57.034 | 33.333 | 15.83 | 6.28 | 0.00 | 2.69 |
4281 | 4530 | 8.763601 | GGGGATAAGATAGTGCTCACTTATATT | 58.236 | 37.037 | 7.92 | 6.31 | 42.54 | 1.28 |
4283 | 4532 | 7.246027 | TGGGGATAAGATAGTGCTCACTTATA | 58.754 | 38.462 | 7.92 | 0.00 | 42.54 | 0.98 |
4284 | 4533 | 6.084738 | TGGGGATAAGATAGTGCTCACTTAT | 58.915 | 40.000 | 7.92 | 0.00 | 42.54 | 1.73 |
4288 | 4537 | 3.643792 | ACTGGGGATAAGATAGTGCTCAC | 59.356 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
4295 | 4544 | 7.518188 | ACAAATAACCACTGGGGATAAGATAG | 58.482 | 38.462 | 1.10 | 0.00 | 41.15 | 2.08 |
4299 | 4548 | 6.850752 | AAACAAATAACCACTGGGGATAAG | 57.149 | 37.500 | 1.10 | 0.00 | 41.15 | 1.73 |
4302 | 4551 | 5.368230 | ACAAAAACAAATAACCACTGGGGAT | 59.632 | 36.000 | 1.10 | 0.00 | 41.15 | 3.85 |
4305 | 4554 | 6.041069 | TCCTACAAAAACAAATAACCACTGGG | 59.959 | 38.462 | 0.00 | 0.00 | 41.29 | 4.45 |
4360 | 4611 | 5.068329 | TCACATTACAAGGTTGTGCAAATGA | 59.932 | 36.000 | 17.68 | 8.33 | 42.31 | 2.57 |
4372 | 4623 | 5.003160 | TGTTCAGGTGATCACATTACAAGG | 58.997 | 41.667 | 26.47 | 7.50 | 0.00 | 3.61 |
4390 | 4641 | 4.023291 | GGGGCCAGAGAAAATAATGTTCA | 58.977 | 43.478 | 4.39 | 0.00 | 0.00 | 3.18 |
4391 | 4642 | 4.281657 | AGGGGCCAGAGAAAATAATGTTC | 58.718 | 43.478 | 4.39 | 0.00 | 0.00 | 3.18 |
4392 | 4643 | 4.337264 | AGGGGCCAGAGAAAATAATGTT | 57.663 | 40.909 | 4.39 | 0.00 | 0.00 | 2.71 |
4394 | 4645 | 5.449553 | ACTTAGGGGCCAGAGAAAATAATG | 58.550 | 41.667 | 4.39 | 0.00 | 0.00 | 1.90 |
4396 | 4647 | 5.530176 | AACTTAGGGGCCAGAGAAAATAA | 57.470 | 39.130 | 4.39 | 0.00 | 0.00 | 1.40 |
4403 | 4654 | 5.714806 | TGAAATTTAAACTTAGGGGCCAGAG | 59.285 | 40.000 | 4.39 | 1.75 | 0.00 | 3.35 |
4407 | 4658 | 5.731957 | TGTGAAATTTAAACTTAGGGGCC | 57.268 | 39.130 | 0.00 | 0.00 | 0.00 | 5.80 |
4427 | 4678 | 5.702670 | AGAACGTCATCATCTTGAACAATGT | 59.297 | 36.000 | 0.00 | 0.00 | 0.00 | 2.71 |
4546 | 4797 | 5.359194 | ACAATGGACCTCGTATTTCAGAT | 57.641 | 39.130 | 0.00 | 0.00 | 0.00 | 2.90 |
4600 | 4851 | 4.098349 | AGGTACAATACGAATGAGGCGTAA | 59.902 | 41.667 | 0.00 | 0.00 | 45.84 | 3.18 |
4639 | 4890 | 5.573219 | ACAATCATCTGGTTGGAGATTTCA | 58.427 | 37.500 | 7.99 | 0.00 | 29.72 | 2.69 |
4660 | 4911 | 4.503910 | ACAATCTCTTGCGTATTGCTACA | 58.496 | 39.130 | 0.00 | 0.00 | 46.63 | 2.74 |
4663 | 4914 | 3.599343 | TGACAATCTCTTGCGTATTGCT | 58.401 | 40.909 | 0.00 | 0.00 | 46.63 | 3.91 |
4666 | 4917 | 5.178061 | TGTCATGACAATCTCTTGCGTATT | 58.822 | 37.500 | 26.02 | 0.00 | 38.56 | 1.89 |
4678 | 4929 | 6.389830 | TTTTGTTACAGCTGTCATGACAAT | 57.610 | 33.333 | 27.63 | 17.16 | 41.33 | 2.71 |
4708 | 4959 | 7.565680 | AGAGGTTATGGTTGTGTAATAAGAGG | 58.434 | 38.462 | 0.00 | 0.00 | 0.00 | 3.69 |
4734 | 4985 | 6.052360 | GGAAGAGAAGCCTTCTATAGGTTTG | 58.948 | 44.000 | 7.02 | 0.00 | 46.32 | 2.93 |
4759 | 5010 | 3.103742 | GGATCTCTGGGTCTCTGTTCTT | 58.896 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
4772 | 5023 | 4.867047 | GTCACTGTACATTGTGGATCTCTG | 59.133 | 45.833 | 12.40 | 0.00 | 35.15 | 3.35 |
4773 | 5024 | 4.528206 | TGTCACTGTACATTGTGGATCTCT | 59.472 | 41.667 | 12.40 | 0.00 | 35.15 | 3.10 |
4775 | 5026 | 4.890158 | TGTCACTGTACATTGTGGATCT | 57.110 | 40.909 | 12.40 | 0.00 | 35.15 | 2.75 |
4784 | 5035 | 6.054941 | TCAACAACTCAATGTCACTGTACAT | 58.945 | 36.000 | 0.00 | 0.00 | 41.87 | 2.29 |
4811 | 5063 | 2.620251 | TCAACAGTGGTTCAGGTCTG | 57.380 | 50.000 | 0.00 | 0.00 | 34.21 | 3.51 |
4823 | 5075 | 4.278419 | GGAGCTACAACCAAATTCAACAGT | 59.722 | 41.667 | 0.00 | 0.00 | 0.00 | 3.55 |
4846 | 5098 | 2.763448 | CTCCCCTTCTAGACAAGTCAGG | 59.237 | 54.545 | 2.72 | 0.00 | 0.00 | 3.86 |
4847 | 5099 | 3.699038 | CTCTCCCCTTCTAGACAAGTCAG | 59.301 | 52.174 | 2.72 | 0.00 | 0.00 | 3.51 |
4853 | 5105 | 5.838955 | TGTAAATCTCTCCCCTTCTAGACA | 58.161 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
4857 | 5109 | 4.557705 | CCCTGTAAATCTCTCCCCTTCTA | 58.442 | 47.826 | 0.00 | 0.00 | 0.00 | 2.10 |
4858 | 5110 | 3.388913 | CCCTGTAAATCTCTCCCCTTCT | 58.611 | 50.000 | 0.00 | 0.00 | 0.00 | 2.85 |
4866 | 5118 | 4.851639 | ATTCACTGCCCTGTAAATCTCT | 57.148 | 40.909 | 0.00 | 0.00 | 0.00 | 3.10 |
4869 | 5121 | 3.763897 | ACCAATTCACTGCCCTGTAAATC | 59.236 | 43.478 | 0.00 | 0.00 | 0.00 | 2.17 |
5025 | 5277 | 3.270027 | TCGCTGTCCACATAGAAAATGG | 58.730 | 45.455 | 0.00 | 0.00 | 34.58 | 3.16 |
5028 | 5280 | 4.154015 | CACATTCGCTGTCCACATAGAAAA | 59.846 | 41.667 | 2.44 | 0.00 | 35.29 | 2.29 |
5036 | 5288 | 1.394917 | GTCATCACATTCGCTGTCCAC | 59.605 | 52.381 | 0.00 | 0.00 | 35.29 | 4.02 |
5085 | 5337 | 5.805486 | CCGTACCAATAACATATCATCGAGG | 59.195 | 44.000 | 0.00 | 0.00 | 0.00 | 4.63 |
5114 | 5366 | 4.803098 | ATAGTATATTCCCAGCACCGAC | 57.197 | 45.455 | 0.00 | 0.00 | 0.00 | 4.79 |
5188 | 5440 | 1.802136 | CGCACAGCAAAAGCTTCCAAA | 60.802 | 47.619 | 0.00 | 0.00 | 0.00 | 3.28 |
5219 | 5471 | 2.947652 | CCACCAGGCATCAAAGTATCTG | 59.052 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
5266 | 6966 | 0.250038 | CACCATCCTCCACTATGGCG | 60.250 | 60.000 | 0.00 | 0.00 | 45.53 | 5.69 |
5269 | 6969 | 4.141642 | TGTTCATCACCATCCTCCACTATG | 60.142 | 45.833 | 0.00 | 0.00 | 0.00 | 2.23 |
5283 | 6986 | 6.503616 | TTGCGTGTTTATTTTGTTCATCAC | 57.496 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
5300 | 7003 | 3.804688 | TGTACATGACGATTTTTGCGTG | 58.195 | 40.909 | 0.00 | 0.00 | 42.77 | 5.34 |
5304 | 7007 | 4.393062 | AGAGGCTGTACATGACGATTTTTG | 59.607 | 41.667 | 0.00 | 0.00 | 0.00 | 2.44 |
5308 | 7011 | 3.895232 | AAGAGGCTGTACATGACGATT | 57.105 | 42.857 | 0.00 | 0.00 | 0.00 | 3.34 |
5313 | 7016 | 3.411446 | CCACAAAAGAGGCTGTACATGA | 58.589 | 45.455 | 0.00 | 0.00 | 0.00 | 3.07 |
5354 | 7065 | 2.425592 | CACCTGACCGTGCTGGAA | 59.574 | 61.111 | 2.38 | 0.00 | 42.00 | 3.53 |
5355 | 7066 | 3.625897 | CCACCTGACCGTGCTGGA | 61.626 | 66.667 | 2.38 | 0.00 | 42.00 | 3.86 |
5356 | 7067 | 3.625897 | TCCACCTGACCGTGCTGG | 61.626 | 66.667 | 0.00 | 0.00 | 46.41 | 4.85 |
5357 | 7068 | 2.357517 | GTCCACCTGACCGTGCTG | 60.358 | 66.667 | 0.00 | 0.00 | 38.09 | 4.41 |
5358 | 7069 | 2.383245 | CTTGTCCACCTGACCGTGCT | 62.383 | 60.000 | 0.00 | 0.00 | 43.78 | 4.40 |
5376 | 7087 | 0.259065 | TCCTCGTAGGGCACTGATCT | 59.741 | 55.000 | 0.00 | 0.00 | 35.59 | 2.75 |
5407 | 7118 | 1.580845 | AACATCAGTGAAGCGCAGGC | 61.581 | 55.000 | 11.47 | 0.00 | 40.37 | 4.85 |
5489 | 7200 | 3.737850 | ACAGCAGGTTCTCTTTTCTCTG | 58.262 | 45.455 | 0.00 | 0.00 | 0.00 | 3.35 |
5495 | 7206 | 3.209410 | CAGACAACAGCAGGTTCTCTTT | 58.791 | 45.455 | 0.00 | 0.00 | 37.72 | 2.52 |
5520 | 7231 | 6.447162 | CCGATTACTGATGCAGACATTACTA | 58.553 | 40.000 | 0.82 | 0.00 | 36.35 | 1.82 |
5526 | 7237 | 1.831106 | ACCCGATTACTGATGCAGACA | 59.169 | 47.619 | 0.82 | 0.00 | 35.18 | 3.41 |
5527 | 7238 | 2.205074 | CACCCGATTACTGATGCAGAC | 58.795 | 52.381 | 0.82 | 0.00 | 35.18 | 3.51 |
5528 | 7239 | 1.831106 | ACACCCGATTACTGATGCAGA | 59.169 | 47.619 | 0.82 | 0.00 | 35.18 | 4.26 |
5529 | 7240 | 2.315925 | ACACCCGATTACTGATGCAG | 57.684 | 50.000 | 0.00 | 0.00 | 37.52 | 4.41 |
5530 | 7241 | 3.028130 | TCTACACCCGATTACTGATGCA | 58.972 | 45.455 | 0.00 | 0.00 | 0.00 | 3.96 |
5531 | 7242 | 3.728076 | TCTACACCCGATTACTGATGC | 57.272 | 47.619 | 0.00 | 0.00 | 0.00 | 3.91 |
5532 | 7243 | 5.043903 | CAGTTCTACACCCGATTACTGATG | 58.956 | 45.833 | 0.00 | 0.00 | 34.87 | 3.07 |
5533 | 7244 | 4.954202 | TCAGTTCTACACCCGATTACTGAT | 59.046 | 41.667 | 0.00 | 0.00 | 36.54 | 2.90 |
5534 | 7245 | 4.338012 | TCAGTTCTACACCCGATTACTGA | 58.662 | 43.478 | 0.00 | 0.00 | 38.44 | 3.41 |
5535 | 7246 | 4.713824 | TCAGTTCTACACCCGATTACTG | 57.286 | 45.455 | 0.00 | 0.00 | 34.38 | 2.74 |
5536 | 7247 | 5.014858 | TCTTCAGTTCTACACCCGATTACT | 58.985 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
5537 | 7248 | 5.105837 | ACTCTTCAGTTCTACACCCGATTAC | 60.106 | 44.000 | 0.00 | 0.00 | 0.00 | 1.89 |
5538 | 7249 | 5.014858 | ACTCTTCAGTTCTACACCCGATTA | 58.985 | 41.667 | 0.00 | 0.00 | 0.00 | 1.75 |
5539 | 7250 | 3.833070 | ACTCTTCAGTTCTACACCCGATT | 59.167 | 43.478 | 0.00 | 0.00 | 0.00 | 3.34 |
5540 | 7251 | 3.193691 | CACTCTTCAGTTCTACACCCGAT | 59.806 | 47.826 | 0.00 | 0.00 | 0.00 | 4.18 |
5541 | 7252 | 2.557056 | CACTCTTCAGTTCTACACCCGA | 59.443 | 50.000 | 0.00 | 0.00 | 0.00 | 5.14 |
5581 | 7292 | 1.134965 | GCAGAGAACGCTATCACCAGT | 60.135 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
5603 | 7316 | 0.823356 | TGCCTCTCACTTTGGTTGGC | 60.823 | 55.000 | 0.00 | 0.00 | 39.33 | 4.52 |
5653 | 7366 | 1.886542 | GTCGAAGGGTGAGGCAAAAAT | 59.113 | 47.619 | 0.00 | 0.00 | 0.00 | 1.82 |
5654 | 7367 | 1.314730 | GTCGAAGGGTGAGGCAAAAA | 58.685 | 50.000 | 0.00 | 0.00 | 0.00 | 1.94 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.