Multiple sequence alignment - TraesCS5A01G072100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G072100 chr5A 100.000 5413 0 0 1 5413 82873155 82867743 0.000000e+00 9997.0
1 TraesCS5A01G072100 chr5A 96.491 57 2 0 5334 5390 82867879 82867823 1.610000e-15 95.3
2 TraesCS5A01G072100 chr5D 95.244 4479 129 26 701 5147 88879565 88875139 0.000000e+00 7014.0
3 TraesCS5A01G072100 chr5D 89.150 341 25 4 77 407 88881142 88880804 1.080000e-111 414.0
4 TraesCS5A01G072100 chr5D 92.537 67 3 1 5138 5202 88875101 88875035 1.610000e-15 95.3
5 TraesCS5A01G072100 chr5D 87.755 49 4 2 625 671 424830087 424830135 7.570000e-04 56.5
6 TraesCS5A01G072100 chr5B 93.274 3360 120 26 1819 5147 95513170 95516454 0.000000e+00 4855.0
7 TraesCS5A01G072100 chr5B 96.284 1238 30 5 671 1901 95511950 95513178 0.000000e+00 2017.0
8 TraesCS5A01G072100 chr5B 87.031 586 49 14 2554 3126 53664967 53665538 2.130000e-178 636.0
9 TraesCS5A01G072100 chr5B 88.788 330 22 10 77 394 95511269 95511595 1.830000e-104 390.0
10 TraesCS5A01G072100 chr5B 96.032 126 4 1 5209 5334 507645036 507645160 2.560000e-48 204.0
11 TraesCS5A01G072100 chr5B 85.882 85 12 0 1141 1225 690647935 690647851 2.080000e-14 91.6
12 TraesCS5A01G072100 chr5B 93.220 59 2 1 5145 5201 95516499 95516557 9.660000e-13 86.1
13 TraesCS5A01G072100 chr2B 87.654 405 30 6 2557 2942 10728516 10728919 2.300000e-123 453.0
14 TraesCS5A01G072100 chr2B 93.220 118 7 1 1666 1783 574708122 574708238 7.210000e-39 172.0
15 TraesCS5A01G072100 chr3A 94.048 168 10 0 3197 3364 34532615 34532448 6.960000e-64 255.0
16 TraesCS5A01G072100 chr3A 95.000 80 4 0 5334 5413 649803007 649803086 5.690000e-25 126.0
17 TraesCS5A01G072100 chr3D 92.982 171 12 0 3195 3365 426452027 426451857 3.240000e-62 250.0
18 TraesCS5A01G072100 chr3D 93.373 166 11 0 3197 3362 71517844 71517679 4.190000e-61 246.0
19 TraesCS5A01G072100 chr3D 87.500 64 3 2 517 576 99195171 99195233 9.730000e-08 69.4
20 TraesCS5A01G072100 chr3B 93.452 168 11 0 3197 3364 42630984 42630817 3.240000e-62 250.0
21 TraesCS5A01G072100 chr3B 96.032 126 4 1 5209 5334 386062146 386062270 2.560000e-48 204.0
22 TraesCS5A01G072100 chr3B 94.615 130 6 1 5206 5334 556713692 556713563 3.310000e-47 200.0
23 TraesCS5A01G072100 chr3B 96.000 50 2 0 5334 5383 436513289 436513338 1.250000e-11 82.4
24 TraesCS5A01G072100 chr1D 92.857 168 12 0 3197 3364 175820002 175819835 1.510000e-60 244.0
25 TraesCS5A01G072100 chr1D 91.803 61 4 1 516 576 450715098 450715157 3.470000e-12 84.2
26 TraesCS5A01G072100 chr7D 92.857 168 11 1 3196 3363 530123836 530124002 5.420000e-60 243.0
27 TraesCS5A01G072100 chr7B 92.308 169 13 0 3196 3364 522721480 522721312 1.950000e-59 241.0
28 TraesCS5A01G072100 chr7B 97.638 127 3 0 5208 5334 113068062 113067936 9.130000e-53 219.0
29 TraesCS5A01G072100 chr7B 93.827 81 5 0 1133 1213 569424221 569424141 7.360000e-24 122.0
30 TraesCS5A01G072100 chr7B 93.548 62 1 1 517 575 626111529 626111468 7.470000e-14 89.8
31 TraesCS5A01G072100 chr1B 97.600 125 3 0 5210 5334 196628967 196628843 1.180000e-51 215.0
32 TraesCS5A01G072100 chr1B 96.825 126 3 1 5209 5334 196649292 196649168 5.490000e-50 209.0
33 TraesCS5A01G072100 chr4B 96.825 126 4 0 5209 5334 402972407 402972282 1.530000e-50 211.0
34 TraesCS5A01G072100 chr1A 96.825 126 4 0 5209 5334 374958111 374957986 1.530000e-50 211.0
35 TraesCS5A01G072100 chr6D 96.032 126 5 0 5209 5334 345780598 345780473 7.110000e-49 206.0
36 TraesCS5A01G072100 chr2A 90.678 118 10 1 1666 1783 634598169 634598285 7.260000e-34 156.0
37 TraesCS5A01G072100 chr4A 94.118 51 2 1 2554 2603 58786705 58786655 5.810000e-10 76.8
38 TraesCS5A01G072100 chr2D 89.062 64 4 1 514 574 11497628 11497691 5.810000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G072100 chr5A 82867743 82873155 5412 True 9997.000000 9997 100.000000 1 5413 1 chr5A.!!$R1 5412
1 TraesCS5A01G072100 chr5D 88875035 88881142 6107 True 2507.766667 7014 92.310333 77 5202 3 chr5D.!!$R1 5125
2 TraesCS5A01G072100 chr5B 95511269 95516557 5288 False 1837.025000 4855 92.891500 77 5201 4 chr5B.!!$F3 5124
3 TraesCS5A01G072100 chr5B 53664967 53665538 571 False 636.000000 636 87.031000 2554 3126 1 chr5B.!!$F1 572

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
437 523 0.037975 TACGCCGGAGTTTGTCTTCC 60.038 55.000 18.33 0.00 0.0 3.46 F
443 548 0.974383 GGAGTTTGTCTTCCCGGAGA 59.026 55.000 0.73 0.00 0.0 3.71 F
563 668 1.146152 CCCCCGCCCCAATTTTATAGA 59.854 52.381 0.00 0.00 0.0 1.98 F
764 1889 2.125229 AGATGCCGCAGTGCTCAG 60.125 61.111 14.33 2.83 0.0 3.35 F
942 2067 3.294493 CCACCCACCAACCAAGCG 61.294 66.667 0.00 0.00 0.0 4.68 F
2538 3751 0.883833 ATTTGAACAAGCTCCTGCCG 59.116 50.000 0.00 0.00 40.8 5.69 F
4071 5298 1.142314 CTCCCCCAAAATGCATGCG 59.858 57.895 14.09 0.00 0.0 4.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1251 2382 0.955178 ACGGACAGACAGACAGACAG 59.045 55.000 0.00 0.0 0.00 3.51 R
2414 3626 2.289882 TGATCAAGGTCAGTGCTTCTGG 60.290 50.000 0.00 0.0 43.76 3.86 R
2416 3628 3.072184 AGTTGATCAAGGTCAGTGCTTCT 59.928 43.478 8.80 0.0 0.00 2.85 R
2538 3751 4.322080 AAGAAAGCAAAAGGTACCAAGC 57.678 40.909 15.94 11.9 0.00 4.01 R
2912 4137 4.963318 TTCCATAGAATCCAAGCGAGAT 57.037 40.909 0.00 0.0 0.00 2.75 R
4165 5392 1.238615 ATGAGGGGCTGAAATGGGAT 58.761 50.000 0.00 0.0 0.00 3.85 R
5326 6640 0.176680 TTTTGCCGCTTTGAGCCAAA 59.823 45.000 0.00 0.0 38.18 3.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.148270 TGAATTTGTTTCGTGAGTATCGTC 57.852 37.500 0.00 0.00 35.72 4.20
24 25 4.817987 ATTTGTTTCGTGAGTATCGTCG 57.182 40.909 0.00 0.00 38.61 5.12
25 26 2.251869 TGTTTCGTGAGTATCGTCGG 57.748 50.000 0.00 0.00 38.61 4.79
26 27 1.536766 TGTTTCGTGAGTATCGTCGGT 59.463 47.619 0.00 0.00 38.61 4.69
27 28 2.172365 GTTTCGTGAGTATCGTCGGTC 58.828 52.381 0.00 0.00 38.61 4.79
28 29 1.730501 TTCGTGAGTATCGTCGGTCT 58.269 50.000 0.00 0.00 38.61 3.85
29 30 1.004595 TCGTGAGTATCGTCGGTCTG 58.995 55.000 0.00 0.00 38.61 3.51
30 31 1.004595 CGTGAGTATCGTCGGTCTGA 58.995 55.000 0.00 0.00 38.61 3.27
31 32 1.598132 CGTGAGTATCGTCGGTCTGAT 59.402 52.381 0.00 0.00 38.61 2.90
32 33 2.600084 CGTGAGTATCGTCGGTCTGATG 60.600 54.545 0.00 0.00 38.61 3.07
33 34 2.612672 GTGAGTATCGTCGGTCTGATGA 59.387 50.000 6.04 6.04 46.35 2.92
34 35 2.612672 TGAGTATCGTCGGTCTGATGAC 59.387 50.000 5.69 3.68 45.16 3.06
35 36 2.612672 GAGTATCGTCGGTCTGATGACA 59.387 50.000 5.69 0.00 45.16 3.58
36 37 3.014623 AGTATCGTCGGTCTGATGACAA 58.985 45.455 5.69 0.00 45.16 3.18
37 38 2.568696 ATCGTCGGTCTGATGACAAG 57.431 50.000 5.69 0.07 45.16 3.16
38 39 1.244816 TCGTCGGTCTGATGACAAGT 58.755 50.000 11.78 0.00 44.61 3.16
39 40 1.199327 TCGTCGGTCTGATGACAAGTC 59.801 52.381 11.78 0.00 44.61 3.01
40 41 1.068541 CGTCGGTCTGATGACAAGTCA 60.069 52.381 5.24 5.24 44.61 3.41
41 42 2.607038 CGTCGGTCTGATGACAAGTCAA 60.607 50.000 7.02 0.00 44.61 3.18
42 43 3.390135 GTCGGTCTGATGACAAGTCAAA 58.610 45.455 7.02 0.00 44.61 2.69
43 44 3.997021 GTCGGTCTGATGACAAGTCAAAT 59.003 43.478 7.02 0.00 44.61 2.32
44 45 5.168569 GTCGGTCTGATGACAAGTCAAATA 58.831 41.667 7.02 0.00 44.61 1.40
45 46 5.637810 GTCGGTCTGATGACAAGTCAAATAA 59.362 40.000 7.02 0.00 44.61 1.40
46 47 5.637810 TCGGTCTGATGACAAGTCAAATAAC 59.362 40.000 7.02 4.25 44.61 1.89
47 48 5.163854 CGGTCTGATGACAAGTCAAATAACC 60.164 44.000 7.02 11.25 44.61 2.85
48 49 5.940470 GGTCTGATGACAAGTCAAATAACCT 59.060 40.000 7.02 0.00 44.61 3.50
49 50 6.128172 GGTCTGATGACAAGTCAAATAACCTG 60.128 42.308 7.02 0.00 44.61 4.00
50 51 5.412594 TCTGATGACAAGTCAAATAACCTGC 59.587 40.000 7.02 0.00 43.58 4.85
51 52 5.316167 TGATGACAAGTCAAATAACCTGCT 58.684 37.500 7.02 0.00 43.58 4.24
52 53 5.769662 TGATGACAAGTCAAATAACCTGCTT 59.230 36.000 7.02 0.00 43.58 3.91
53 54 5.689383 TGACAAGTCAAATAACCTGCTTC 57.311 39.130 0.00 0.00 36.53 3.86
54 55 4.213270 TGACAAGTCAAATAACCTGCTTCG 59.787 41.667 0.00 0.00 36.53 3.79
55 56 4.134563 ACAAGTCAAATAACCTGCTTCGT 58.865 39.130 0.00 0.00 0.00 3.85
56 57 4.578928 ACAAGTCAAATAACCTGCTTCGTT 59.421 37.500 0.00 0.00 0.00 3.85
57 58 5.147162 CAAGTCAAATAACCTGCTTCGTTC 58.853 41.667 0.00 0.00 0.00 3.95
58 59 4.385825 AGTCAAATAACCTGCTTCGTTCA 58.614 39.130 0.00 0.00 0.00 3.18
59 60 4.213482 AGTCAAATAACCTGCTTCGTTCAC 59.787 41.667 0.00 0.00 0.00 3.18
60 61 3.500680 TCAAATAACCTGCTTCGTTCACC 59.499 43.478 0.00 0.00 0.00 4.02
61 62 2.109425 ATAACCTGCTTCGTTCACCC 57.891 50.000 0.00 0.00 0.00 4.61
62 63 0.320073 TAACCTGCTTCGTTCACCCG 60.320 55.000 0.00 0.00 0.00 5.28
63 64 3.423154 CCTGCTTCGTTCACCCGC 61.423 66.667 0.00 0.00 0.00 6.13
64 65 2.664851 CTGCTTCGTTCACCCGCA 60.665 61.111 0.00 0.00 0.00 5.69
65 66 2.203084 TGCTTCGTTCACCCGCAA 60.203 55.556 0.00 0.00 0.00 4.85
66 67 1.781025 CTGCTTCGTTCACCCGCAAA 61.781 55.000 0.00 0.00 0.00 3.68
67 68 1.357334 GCTTCGTTCACCCGCAAAA 59.643 52.632 0.00 0.00 0.00 2.44
68 69 0.248702 GCTTCGTTCACCCGCAAAAA 60.249 50.000 0.00 0.00 0.00 1.94
95 96 3.297830 AAAATAACCTGCTTCGTTGGC 57.702 42.857 0.00 0.00 0.00 4.52
96 97 2.200373 AATAACCTGCTTCGTTGGCT 57.800 45.000 0.00 0.00 0.00 4.75
97 98 3.343941 AATAACCTGCTTCGTTGGCTA 57.656 42.857 0.00 0.00 0.00 3.93
98 99 2.380084 TAACCTGCTTCGTTGGCTAG 57.620 50.000 0.00 0.00 0.00 3.42
99 100 0.955919 AACCTGCTTCGTTGGCTAGC 60.956 55.000 6.04 6.04 35.50 3.42
100 101 1.078848 CCTGCTTCGTTGGCTAGCT 60.079 57.895 15.72 0.00 35.93 3.32
101 102 1.086634 CCTGCTTCGTTGGCTAGCTC 61.087 60.000 15.72 5.44 35.93 4.09
102 103 0.108424 CTGCTTCGTTGGCTAGCTCT 60.108 55.000 15.72 0.00 35.93 4.09
103 104 1.135139 CTGCTTCGTTGGCTAGCTCTA 59.865 52.381 15.72 0.00 35.93 2.43
130 131 2.281484 GCTGGTCTTGGACGGCAA 60.281 61.111 0.00 0.00 34.22 4.52
187 192 1.432270 CCAAACTAGCTGCTAGCCGC 61.432 60.000 31.08 22.11 43.77 6.53
223 237 1.268184 CCATGTGATTTGTGATCGCCG 60.268 52.381 3.31 0.00 0.00 6.46
224 238 1.398041 CATGTGATTTGTGATCGCCGT 59.602 47.619 3.31 0.00 0.00 5.68
254 268 1.997606 GACGAATCCCTACACGTTTGG 59.002 52.381 0.00 0.00 39.04 3.28
268 282 1.976474 TTTGGCCCAGCGATCAACC 60.976 57.895 0.00 0.00 0.00 3.77
322 336 3.365364 GCTAAACCAACACAGCTAGCTTG 60.365 47.826 16.46 18.21 31.23 4.01
331 345 2.223144 CACAGCTAGCTTGCGTGTTTTA 59.777 45.455 24.66 0.00 38.13 1.52
335 349 5.180492 ACAGCTAGCTTGCGTGTTTTATTAA 59.820 36.000 16.46 0.00 38.13 1.40
373 387 6.424557 CAAACGAGTTTGTGATGATGTTTC 57.575 37.500 17.73 0.00 43.52 2.78
381 395 2.019984 GTGATGATGTTTCTCCCTGCC 58.980 52.381 0.00 0.00 0.00 4.85
394 408 1.830477 TCCCTGCCAACCAATTTATGC 59.170 47.619 0.00 0.00 0.00 3.14
397 411 3.450457 CCCTGCCAACCAATTTATGCTTA 59.550 43.478 0.00 0.00 0.00 3.09
407 421 8.603181 CAACCAATTTATGCTTAAATGGTTAGC 58.397 33.333 27.75 0.00 41.27 3.09
408 422 7.272244 ACCAATTTATGCTTAAATGGTTAGCC 58.728 34.615 20.81 0.00 37.92 3.93
421 507 6.490566 AATGGTTAGCCTTTAAGTTGTACG 57.509 37.500 0.00 0.00 35.27 3.67
423 509 3.125829 GGTTAGCCTTTAAGTTGTACGCC 59.874 47.826 0.00 0.00 0.00 5.68
431 517 1.223187 AAGTTGTACGCCGGAGTTTG 58.777 50.000 18.33 0.00 0.00 2.93
433 519 0.509929 GTTGTACGCCGGAGTTTGTC 59.490 55.000 18.33 5.90 0.00 3.18
437 523 0.037975 TACGCCGGAGTTTGTCTTCC 60.038 55.000 18.33 0.00 0.00 3.46
438 524 2.033194 CGCCGGAGTTTGTCTTCCC 61.033 63.158 5.05 0.00 0.00 3.97
440 545 4.278956 CGGAGTTTGTCTTCCCGG 57.721 61.111 0.00 0.00 36.81 5.73
443 548 0.974383 GGAGTTTGTCTTCCCGGAGA 59.026 55.000 0.73 0.00 0.00 3.71
445 550 2.224450 GGAGTTTGTCTTCCCGGAGAAA 60.224 50.000 0.73 0.00 32.88 2.52
451 556 3.827722 TGTCTTCCCGGAGAAAATGTTT 58.172 40.909 0.73 0.00 32.88 2.83
454 559 2.961531 TCCCGGAGAAAATGTTTCCA 57.038 45.000 0.73 0.00 0.00 3.53
457 562 3.088532 CCCGGAGAAAATGTTTCCATCA 58.911 45.455 0.73 0.00 0.00 3.07
476 581 6.601613 TCCATCAACTACAAAAACTTCTGTGT 59.398 34.615 0.00 0.00 0.00 3.72
477 582 7.771361 TCCATCAACTACAAAAACTTCTGTGTA 59.229 33.333 0.00 0.00 0.00 2.90
481 586 6.935741 ACTACAAAAACTTCTGTGTATGCA 57.064 33.333 0.00 0.00 0.00 3.96
482 587 6.959361 ACTACAAAAACTTCTGTGTATGCAG 58.041 36.000 0.00 0.00 37.81 4.41
483 588 6.765989 ACTACAAAAACTTCTGTGTATGCAGA 59.234 34.615 0.00 0.00 43.03 4.26
508 613 6.619801 AAAAACAAAGACTTCTATGCGACT 57.380 33.333 0.00 0.00 0.00 4.18
509 614 6.619801 AAAACAAAGACTTCTATGCGACTT 57.380 33.333 0.00 0.00 0.00 3.01
510 615 5.847670 AACAAAGACTTCTATGCGACTTC 57.152 39.130 0.00 0.00 0.00 3.01
511 616 3.921021 ACAAAGACTTCTATGCGACTTCG 59.079 43.478 0.00 0.00 43.27 3.79
543 648 4.746535 TTTTGAAAGAAAGGGGTTGTCC 57.253 40.909 0.00 0.00 0.00 4.02
560 665 4.718143 CCCCCGCCCCAATTTTAT 57.282 55.556 0.00 0.00 0.00 1.40
561 666 3.852558 CCCCCGCCCCAATTTTATA 57.147 52.632 0.00 0.00 0.00 0.98
562 667 1.627864 CCCCCGCCCCAATTTTATAG 58.372 55.000 0.00 0.00 0.00 1.31
563 668 1.146152 CCCCCGCCCCAATTTTATAGA 59.854 52.381 0.00 0.00 0.00 1.98
564 669 2.225267 CCCCCGCCCCAATTTTATAGAT 60.225 50.000 0.00 0.00 0.00 1.98
565 670 3.506398 CCCCGCCCCAATTTTATAGATT 58.494 45.455 0.00 0.00 0.00 2.40
566 671 3.258123 CCCCGCCCCAATTTTATAGATTG 59.742 47.826 4.68 4.68 34.93 2.67
567 672 4.148838 CCCGCCCCAATTTTATAGATTGA 58.851 43.478 10.74 0.00 36.78 2.57
568 673 4.586841 CCCGCCCCAATTTTATAGATTGAA 59.413 41.667 10.74 0.00 36.78 2.69
569 674 5.278957 CCCGCCCCAATTTTATAGATTGAAG 60.279 44.000 10.74 5.00 36.78 3.02
570 675 5.222631 CGCCCCAATTTTATAGATTGAAGC 58.777 41.667 10.74 10.97 36.78 3.86
571 676 5.221224 CGCCCCAATTTTATAGATTGAAGCA 60.221 40.000 10.74 0.00 36.78 3.91
572 677 6.218746 GCCCCAATTTTATAGATTGAAGCAG 58.781 40.000 10.74 0.00 36.78 4.24
573 678 6.040842 GCCCCAATTTTATAGATTGAAGCAGA 59.959 38.462 10.74 0.00 36.78 4.26
574 679 7.417797 GCCCCAATTTTATAGATTGAAGCAGAA 60.418 37.037 10.74 0.00 36.78 3.02
575 680 8.645110 CCCCAATTTTATAGATTGAAGCAGAAT 58.355 33.333 10.74 0.00 36.78 2.40
576 681 9.472361 CCCAATTTTATAGATTGAAGCAGAATG 57.528 33.333 10.74 0.00 36.78 2.67
598 703 5.906073 TGCGACTTCATCAATCTCAAGATA 58.094 37.500 0.00 0.00 33.73 1.98
601 706 8.143835 TGCGACTTCATCAATCTCAAGATAATA 58.856 33.333 0.00 0.00 33.73 0.98
688 913 8.902540 AGTGTATGAGTTTGTGATGACTTTTA 57.097 30.769 0.00 0.00 0.00 1.52
764 1889 2.125229 AGATGCCGCAGTGCTCAG 60.125 61.111 14.33 2.83 0.00 3.35
942 2067 3.294493 CCACCCACCAACCAAGCG 61.294 66.667 0.00 0.00 0.00 4.68
1365 2500 5.000012 ACAACTCCGCAACACAAATTTTA 58.000 34.783 0.00 0.00 0.00 1.52
1467 2603 5.707298 CCAGACAGGTGTGATGAAGTTATTT 59.293 40.000 0.00 0.00 0.00 1.40
1468 2604 6.878923 CCAGACAGGTGTGATGAAGTTATTTA 59.121 38.462 0.00 0.00 0.00 1.40
1469 2605 7.148407 CCAGACAGGTGTGATGAAGTTATTTAC 60.148 40.741 0.00 0.00 0.00 2.01
1470 2606 6.590292 AGACAGGTGTGATGAAGTTATTTACG 59.410 38.462 0.00 0.00 0.00 3.18
1471 2607 6.460781 ACAGGTGTGATGAAGTTATTTACGA 58.539 36.000 0.00 0.00 0.00 3.43
1472 2608 6.590292 ACAGGTGTGATGAAGTTATTTACGAG 59.410 38.462 0.00 0.00 0.00 4.18
1577 2713 9.901172 TCGATGTACTAGAATAGGATTAGCATA 57.099 33.333 0.00 0.00 44.97 3.14
1626 2762 3.326836 TGCTGTTCATTACCATGACGA 57.673 42.857 0.00 0.00 39.28 4.20
1939 3149 3.642848 AGAAGACACATTTTGGCATGGTT 59.357 39.130 0.00 0.00 34.40 3.67
1940 3150 4.832266 AGAAGACACATTTTGGCATGGTTA 59.168 37.500 0.00 0.00 34.40 2.85
1988 3198 4.655963 AGTAGCAAATGACTTGATGTGGT 58.344 39.130 0.00 0.00 37.17 4.16
2082 3292 7.500141 TGTTGCATGCTCTTATTATCTCTGTA 58.500 34.615 20.33 0.00 0.00 2.74
2083 3293 7.654923 TGTTGCATGCTCTTATTATCTCTGTAG 59.345 37.037 20.33 0.00 0.00 2.74
2091 3303 9.134734 GCTCTTATTATCTCTGTAGAAAATCGG 57.865 37.037 0.00 0.00 34.73 4.18
2102 3314 6.425721 TCTGTAGAAAATCGGAATTCAACGTT 59.574 34.615 7.93 0.00 0.00 3.99
2125 3337 4.642429 ACTACTCACTGTAAAAAGGGCAG 58.358 43.478 0.00 0.00 0.00 4.85
2126 3338 3.577805 ACTCACTGTAAAAAGGGCAGT 57.422 42.857 0.00 0.00 0.00 4.40
2127 3339 4.699925 ACTCACTGTAAAAAGGGCAGTA 57.300 40.909 0.00 0.00 0.00 2.74
2197 3409 8.561738 ACATGTTTTAAGGGTGTGAACTATAG 57.438 34.615 0.00 0.00 0.00 1.31
2232 3444 7.443879 TCATGTTGCATAGTTTCTTTGAGTGTA 59.556 33.333 0.00 0.00 0.00 2.90
2250 3462 6.311935 TGAGTGTACGATTTTAATGCTGGTAC 59.688 38.462 0.00 0.00 0.00 3.34
2256 3468 6.919721 ACGATTTTAATGCTGGTACAATTGT 58.080 32.000 16.68 16.68 38.70 2.71
2263 3475 4.829064 TGCTGGTACAATTGTTGTCTTC 57.171 40.909 17.78 3.26 44.12 2.87
2376 3588 6.373186 TCATAATTTCAGAAGCAGCAGATG 57.627 37.500 0.00 0.00 0.00 2.90
2406 3618 9.347240 ACATGCTAGCTAAACTTAATCATTCAT 57.653 29.630 17.23 0.00 0.00 2.57
2414 3626 9.657121 GCTAAACTTAATCATTCATACTTCAGC 57.343 33.333 0.00 0.00 0.00 4.26
2416 3628 8.579850 AAACTTAATCATTCATACTTCAGCCA 57.420 30.769 0.00 0.00 0.00 4.75
2451 3663 8.408043 ACCTTGATCAACTTATTTTCATGTGA 57.592 30.769 3.38 0.00 0.00 3.58
2538 3751 0.883833 ATTTGAACAAGCTCCTGCCG 59.116 50.000 0.00 0.00 40.80 5.69
2547 3760 2.125106 CTCCTGCCGCTTGGTACC 60.125 66.667 4.43 4.43 34.16 3.34
2660 3880 6.175471 TCGTCTGTATTTCAGGTACACTCTA 58.825 40.000 0.00 0.00 43.76 2.43
2998 4223 5.883115 TGATTGTTACTCCAACTGTTTCACA 59.117 36.000 0.00 0.00 38.05 3.58
3029 4254 2.309458 GGTCTCTCCTACCTCGGGATAT 59.691 54.545 0.00 0.00 33.97 1.63
3030 4255 3.613030 GTCTCTCCTACCTCGGGATATC 58.387 54.545 0.00 0.00 31.89 1.63
3059 4284 8.408043 TTTCAAAATGTCTGTGTATTGAGGAT 57.592 30.769 0.00 0.00 0.00 3.24
3089 4314 3.880490 GTGTGGTTATTGTGTTGACTCCA 59.120 43.478 0.00 0.00 0.00 3.86
3302 4527 1.384191 CAGGGGTAAGGCTTGCCTT 59.616 57.895 29.53 27.07 35.54 4.35
3402 4627 2.016905 AAGCATAGTAGGCGGAGGAT 57.983 50.000 0.38 0.00 36.08 3.24
3416 4641 8.964772 GTAGGCGGAGGATAGATATAGTAAAAA 58.035 37.037 0.00 0.00 0.00 1.94
3550 4775 5.801531 TCACAAGAAGGCTAGTTTCTGTA 57.198 39.130 10.98 0.00 35.20 2.74
3554 4779 6.428159 CACAAGAAGGCTAGTTTCTGTAATGT 59.572 38.462 10.98 9.15 35.20 2.71
3562 4787 5.578727 GCTAGTTTCTGTAATGTCTGAGGTG 59.421 44.000 0.00 0.00 0.00 4.00
3637 4863 4.287067 TCTGCCTTAAGTTTCCACTCATCT 59.713 41.667 0.97 0.00 30.45 2.90
3638 4864 5.483937 TCTGCCTTAAGTTTCCACTCATCTA 59.516 40.000 0.97 0.00 30.45 1.98
3639 4865 5.488341 TGCCTTAAGTTTCCACTCATCTAC 58.512 41.667 0.97 0.00 30.45 2.59
3640 4866 4.876679 GCCTTAAGTTTCCACTCATCTACC 59.123 45.833 0.97 0.00 30.45 3.18
3641 4867 5.570844 GCCTTAAGTTTCCACTCATCTACCA 60.571 44.000 0.97 0.00 30.45 3.25
3642 4868 6.653989 CCTTAAGTTTCCACTCATCTACCAT 58.346 40.000 0.97 0.00 30.45 3.55
3643 4869 7.112779 CCTTAAGTTTCCACTCATCTACCATT 58.887 38.462 0.97 0.00 30.45 3.16
3644 4870 7.066284 CCTTAAGTTTCCACTCATCTACCATTG 59.934 40.741 0.97 0.00 30.45 2.82
3645 4871 4.265073 AGTTTCCACTCATCTACCATTGC 58.735 43.478 0.00 0.00 0.00 3.56
3646 4872 4.018960 AGTTTCCACTCATCTACCATTGCT 60.019 41.667 0.00 0.00 0.00 3.91
3647 4873 4.574674 TTCCACTCATCTACCATTGCTT 57.425 40.909 0.00 0.00 0.00 3.91
3648 4874 3.877559 TCCACTCATCTACCATTGCTTG 58.122 45.455 0.00 0.00 0.00 4.01
3649 4875 3.519107 TCCACTCATCTACCATTGCTTGA 59.481 43.478 0.00 0.00 0.00 3.02
3650 4876 3.875727 CCACTCATCTACCATTGCTTGAG 59.124 47.826 0.00 0.00 37.27 3.02
3651 4877 4.383444 CCACTCATCTACCATTGCTTGAGA 60.383 45.833 4.87 0.00 35.65 3.27
3923 5149 2.418746 GCGGATAAGCTTCTCAGGTTCA 60.419 50.000 13.25 0.00 41.18 3.18
3951 5177 2.495669 ACCTGTTTTGTGTCTGGTTTGG 59.504 45.455 0.00 0.00 33.29 3.28
3962 5189 1.202879 TCTGGTTTGGGCCACTAACTG 60.203 52.381 18.04 11.10 35.54 3.16
4071 5298 1.142314 CTCCCCCAAAATGCATGCG 59.858 57.895 14.09 0.00 0.00 4.73
4165 5392 2.343484 ACTCGTGGAGGATGTATCGA 57.657 50.000 0.00 0.00 33.35 3.59
4194 5421 4.426357 TCAGCCCCTCATATCTATTCCT 57.574 45.455 0.00 0.00 0.00 3.36
4308 5535 1.971357 ACTCTGATCACCCGTTTCTGT 59.029 47.619 0.00 0.00 0.00 3.41
4376 5603 1.740296 GCGCCGGTTAGAGCTTTCA 60.740 57.895 1.90 0.00 0.00 2.69
4392 5619 1.538047 TTCACAGCTCCTGGAAATGC 58.462 50.000 0.00 0.00 35.51 3.56
4478 5713 2.040544 GCCGGTTGTCATCACCCAG 61.041 63.158 1.90 0.00 0.00 4.45
4595 5830 1.000274 GCCACAAAAGCTCGAAATGGT 60.000 47.619 0.00 0.00 0.00 3.55
4603 5838 3.126001 AGCTCGAAATGGTTGAGTTGA 57.874 42.857 0.00 0.00 32.32 3.18
4643 5878 0.320374 CCTGCGAAGTTACCAGGTGA 59.680 55.000 0.76 0.00 40.92 4.02
4700 5935 6.106673 GTGCATATGTTCTGGTAGTGTAGTT 58.893 40.000 4.29 0.00 0.00 2.24
4838 6073 3.020984 TGTCAACTTGAAGGGTGTTTCC 58.979 45.455 0.00 0.00 0.00 3.13
4839 6074 3.288092 GTCAACTTGAAGGGTGTTTCCT 58.712 45.455 0.00 0.00 39.17 3.36
4883 6128 9.415544 GCATTTTCAGACTAATGAGATGTTTTT 57.584 29.630 8.14 0.00 34.44 1.94
4896 6141 3.074538 AGATGTTTTTGTAGCCTGGAGGT 59.925 43.478 0.00 0.00 37.57 3.85
4958 6210 6.486657 TGGCCTGCTGTAACATTATAAGATTC 59.513 38.462 3.32 0.00 0.00 2.52
4959 6211 6.486657 GGCCTGCTGTAACATTATAAGATTCA 59.513 38.462 0.00 0.00 0.00 2.57
4960 6212 7.013274 GGCCTGCTGTAACATTATAAGATTCAA 59.987 37.037 0.00 0.00 0.00 2.69
4981 6233 5.064071 TCAATTTTGTTTTCGTTTTCCAGGC 59.936 36.000 0.00 0.00 0.00 4.85
5016 6277 4.022068 CCTTTAGTGCCTTTTCATCTTGCA 60.022 41.667 0.00 0.00 0.00 4.08
5031 6292 0.032403 TTGCACATCACCAAGCTTGC 59.968 50.000 21.43 8.41 0.00 4.01
5050 6311 1.931172 GCGCGTAGATGAAGGCTTAAA 59.069 47.619 8.43 0.00 0.00 1.52
5066 6328 4.389992 GGCTTAAAGGCTTCTTTGATTTGC 59.610 41.667 0.00 0.00 40.57 3.68
5078 6340 6.662865 TCTTTGATTTGCATGGTTTCCTTA 57.337 33.333 0.00 0.00 0.00 2.69
5080 6342 7.504403 TCTTTGATTTGCATGGTTTCCTTAAA 58.496 30.769 0.00 0.00 0.00 1.52
5205 6519 9.440761 ACTCCTGAGAAGGTAAGATTATATTGT 57.559 33.333 0.22 0.00 0.00 2.71
5236 6550 3.520569 TGAAACAAGGCAAAAGACTTGC 58.479 40.909 10.80 0.78 46.03 4.01
5246 6560 5.678132 GCAAAAGACTTGCCAATTTCATT 57.322 34.783 0.00 0.00 39.38 2.57
5247 6561 6.783892 GCAAAAGACTTGCCAATTTCATTA 57.216 33.333 0.00 0.00 39.38 1.90
5248 6562 7.188468 GCAAAAGACTTGCCAATTTCATTAA 57.812 32.000 0.00 0.00 39.38 1.40
5249 6563 7.809665 GCAAAAGACTTGCCAATTTCATTAAT 58.190 30.769 0.00 0.00 39.38 1.40
5250 6564 8.291740 GCAAAAGACTTGCCAATTTCATTAATT 58.708 29.630 0.00 0.00 39.38 1.40
5260 6574 9.874205 TGCCAATTTCATTAATTAAGAAGAAGG 57.126 29.630 3.94 10.06 34.69 3.46
5261 6575 9.875691 GCCAATTTCATTAATTAAGAAGAAGGT 57.124 29.630 3.94 0.11 34.69 3.50
5273 6587 9.967346 AATTAAGAAGAAGGTTTAGACAAAAGC 57.033 29.630 0.00 0.00 44.29 3.51
5274 6588 6.392625 AAGAAGAAGGTTTAGACAAAAGCC 57.607 37.500 0.00 0.00 44.91 4.35
5275 6589 4.515567 AGAAGAAGGTTTAGACAAAAGCCG 59.484 41.667 0.00 0.00 44.91 5.52
5276 6590 2.552743 AGAAGGTTTAGACAAAAGCCGC 59.447 45.455 0.00 0.00 44.91 6.53
5277 6591 1.975660 AGGTTTAGACAAAAGCCGCA 58.024 45.000 0.00 0.00 44.91 5.69
5278 6592 2.303175 AGGTTTAGACAAAAGCCGCAA 58.697 42.857 0.00 0.00 44.91 4.85
5279 6593 2.691011 AGGTTTAGACAAAAGCCGCAAA 59.309 40.909 0.00 0.00 44.91 3.68
5280 6594 3.049912 GGTTTAGACAAAAGCCGCAAAG 58.950 45.455 0.00 0.00 39.23 2.77
5281 6595 2.415697 TTAGACAAAAGCCGCAAAGC 57.584 45.000 0.00 0.00 0.00 3.51
5296 6610 4.052630 GCAAAGCGGCAAAATAAAAGAC 57.947 40.909 1.45 0.00 0.00 3.01
5297 6611 3.740832 GCAAAGCGGCAAAATAAAAGACT 59.259 39.130 1.45 0.00 0.00 3.24
5298 6612 4.920927 GCAAAGCGGCAAAATAAAAGACTA 59.079 37.500 1.45 0.00 0.00 2.59
5299 6613 5.164090 GCAAAGCGGCAAAATAAAAGACTAC 60.164 40.000 1.45 0.00 0.00 2.73
5300 6614 5.959618 AAGCGGCAAAATAAAAGACTACT 57.040 34.783 1.45 0.00 0.00 2.57
5301 6615 5.547181 AGCGGCAAAATAAAAGACTACTC 57.453 39.130 1.45 0.00 0.00 2.59
5302 6616 5.246307 AGCGGCAAAATAAAAGACTACTCT 58.754 37.500 1.45 0.00 0.00 3.24
5303 6617 5.351740 AGCGGCAAAATAAAAGACTACTCTC 59.648 40.000 1.45 0.00 0.00 3.20
5304 6618 5.724223 GCGGCAAAATAAAAGACTACTCTCG 60.724 44.000 0.00 0.00 0.00 4.04
5305 6619 5.561070 GGCAAAATAAAAGACTACTCTCGC 58.439 41.667 0.00 0.00 0.00 5.03
5306 6620 5.248834 GCAAAATAAAAGACTACTCTCGCG 58.751 41.667 0.00 0.00 0.00 5.87
5307 6621 5.061808 GCAAAATAAAAGACTACTCTCGCGA 59.938 40.000 9.26 9.26 0.00 5.87
5308 6622 6.237861 GCAAAATAAAAGACTACTCTCGCGAT 60.238 38.462 10.36 0.00 0.00 4.58
5309 6623 7.043590 GCAAAATAAAAGACTACTCTCGCGATA 60.044 37.037 10.36 0.10 0.00 2.92
5310 6624 8.969267 CAAAATAAAAGACTACTCTCGCGATAT 58.031 33.333 10.36 0.00 0.00 1.63
5315 6629 8.508800 AAAAGACTACTCTCGCGATATAATTG 57.491 34.615 10.36 0.00 0.00 2.32
5316 6630 5.632959 AGACTACTCTCGCGATATAATTGC 58.367 41.667 10.36 0.00 36.29 3.56
5317 6631 5.181433 AGACTACTCTCGCGATATAATTGCA 59.819 40.000 10.36 0.00 39.73 4.08
5318 6632 5.154932 ACTACTCTCGCGATATAATTGCAC 58.845 41.667 10.36 0.00 39.73 4.57
5319 6633 4.244425 ACTCTCGCGATATAATTGCACT 57.756 40.909 10.36 0.00 39.73 4.40
5320 6634 4.230657 ACTCTCGCGATATAATTGCACTC 58.769 43.478 10.36 0.00 39.73 3.51
5321 6635 4.229876 CTCTCGCGATATAATTGCACTCA 58.770 43.478 10.36 0.00 39.73 3.41
5322 6636 4.809673 TCTCGCGATATAATTGCACTCAT 58.190 39.130 10.36 0.00 39.73 2.90
5323 6637 4.622740 TCTCGCGATATAATTGCACTCATG 59.377 41.667 10.36 0.00 39.73 3.07
5324 6638 4.306600 TCGCGATATAATTGCACTCATGT 58.693 39.130 3.71 0.00 39.73 3.21
5325 6639 4.150451 TCGCGATATAATTGCACTCATGTG 59.850 41.667 3.71 0.00 46.37 3.21
5326 6640 4.084380 CGCGATATAATTGCACTCATGTGT 60.084 41.667 0.00 0.00 45.44 3.72
5327 6641 5.558844 CGCGATATAATTGCACTCATGTGTT 60.559 40.000 0.00 0.00 45.44 3.32
5328 6642 6.201517 GCGATATAATTGCACTCATGTGTTT 58.798 36.000 0.00 0.00 45.44 2.83
5329 6643 6.141211 GCGATATAATTGCACTCATGTGTTTG 59.859 38.462 0.00 0.00 45.44 2.93
5330 6644 6.634035 CGATATAATTGCACTCATGTGTTTGG 59.366 38.462 0.00 0.00 45.44 3.28
5331 6645 2.443887 ATTGCACTCATGTGTTTGGC 57.556 45.000 0.00 0.00 45.44 4.52
5332 6646 1.401761 TTGCACTCATGTGTTTGGCT 58.598 45.000 0.00 0.00 45.44 4.75
5333 6647 0.953727 TGCACTCATGTGTTTGGCTC 59.046 50.000 0.00 0.00 45.44 4.70
5334 6648 0.953727 GCACTCATGTGTTTGGCTCA 59.046 50.000 0.00 0.00 45.44 4.26
5335 6649 1.337703 GCACTCATGTGTTTGGCTCAA 59.662 47.619 0.00 0.00 45.44 3.02
5336 6650 2.223782 GCACTCATGTGTTTGGCTCAAA 60.224 45.455 0.00 0.00 45.44 2.69
5337 6651 3.635331 CACTCATGTGTTTGGCTCAAAG 58.365 45.455 0.00 0.00 39.24 2.77
5338 6652 2.035066 ACTCATGTGTTTGGCTCAAAGC 59.965 45.455 0.00 0.00 41.46 3.51
5339 6653 1.001487 TCATGTGTTTGGCTCAAAGCG 60.001 47.619 0.00 0.00 43.62 4.68
5340 6654 0.314935 ATGTGTTTGGCTCAAAGCGG 59.685 50.000 1.21 0.00 43.62 5.52
5341 6655 1.661509 GTGTTTGGCTCAAAGCGGC 60.662 57.895 0.00 0.00 43.62 6.53
5342 6656 2.124060 TGTTTGGCTCAAAGCGGCA 61.124 52.632 1.45 0.00 43.62 5.69
5343 6657 1.067250 GTTTGGCTCAAAGCGGCAA 59.933 52.632 1.45 0.00 43.62 4.52
5344 6658 3.531283 TTGGCTCAAAGCGGCAAA 58.469 50.000 1.45 0.00 43.62 3.68
5345 6659 1.819229 TTGGCTCAAAGCGGCAAAA 59.181 47.368 1.45 0.00 43.62 2.44
5346 6660 0.392336 TTGGCTCAAAGCGGCAAAAT 59.608 45.000 1.45 0.00 43.62 1.82
5347 6661 1.252175 TGGCTCAAAGCGGCAAAATA 58.748 45.000 1.45 0.00 43.62 1.40
5348 6662 1.615883 TGGCTCAAAGCGGCAAAATAA 59.384 42.857 1.45 0.00 43.62 1.40
5349 6663 2.036475 TGGCTCAAAGCGGCAAAATAAA 59.964 40.909 1.45 0.00 43.62 1.40
5350 6664 3.063485 GGCTCAAAGCGGCAAAATAAAA 58.937 40.909 1.45 0.00 43.62 1.52
5351 6665 3.123453 GGCTCAAAGCGGCAAAATAAAAG 59.877 43.478 1.45 0.00 43.62 2.27
5352 6666 3.987220 GCTCAAAGCGGCAAAATAAAAGA 59.013 39.130 1.45 0.00 0.00 2.52
5353 6667 4.143326 GCTCAAAGCGGCAAAATAAAAGAC 60.143 41.667 1.45 0.00 0.00 3.01
5354 6668 5.195001 TCAAAGCGGCAAAATAAAAGACT 57.805 34.783 1.45 0.00 0.00 3.24
5355 6669 6.320494 TCAAAGCGGCAAAATAAAAGACTA 57.680 33.333 1.45 0.00 0.00 2.59
5356 6670 6.146898 TCAAAGCGGCAAAATAAAAGACTAC 58.853 36.000 1.45 0.00 0.00 2.73
5357 6671 5.959618 AAGCGGCAAAATAAAAGACTACT 57.040 34.783 1.45 0.00 0.00 2.57
5358 6672 5.547181 AGCGGCAAAATAAAAGACTACTC 57.453 39.130 1.45 0.00 0.00 2.59
5359 6673 5.246307 AGCGGCAAAATAAAAGACTACTCT 58.754 37.500 1.45 0.00 0.00 3.24
5360 6674 5.351740 AGCGGCAAAATAAAAGACTACTCTC 59.648 40.000 1.45 0.00 0.00 3.20
5361 6675 5.724223 GCGGCAAAATAAAAGACTACTCTCG 60.724 44.000 0.00 0.00 0.00 4.04
5362 6676 5.347907 CGGCAAAATAAAAGACTACTCTCGT 59.652 40.000 0.00 0.00 0.00 4.18
5363 6677 6.534934 GGCAAAATAAAAGACTACTCTCGTG 58.465 40.000 0.00 0.00 0.00 4.35
5364 6678 6.367969 GGCAAAATAAAAGACTACTCTCGTGA 59.632 38.462 0.00 0.00 0.00 4.35
5365 6679 7.095355 GGCAAAATAAAAGACTACTCTCGTGAA 60.095 37.037 0.00 0.00 0.00 3.18
5366 6680 8.280497 GCAAAATAAAAGACTACTCTCGTGAAA 58.720 33.333 0.00 0.00 0.00 2.69
5373 6687 7.527084 AAGACTACTCTCGTGAAATAATTGC 57.473 36.000 0.00 0.00 0.00 3.56
5374 6688 6.631016 AGACTACTCTCGTGAAATAATTGCA 58.369 36.000 0.00 0.00 0.00 4.08
5375 6689 6.531948 AGACTACTCTCGTGAAATAATTGCAC 59.468 38.462 0.00 0.00 0.00 4.57
5376 6690 6.398918 ACTACTCTCGTGAAATAATTGCACT 58.601 36.000 0.00 0.00 0.00 4.40
5377 6691 5.786401 ACTCTCGTGAAATAATTGCACTC 57.214 39.130 0.00 0.00 0.00 3.51
5378 6692 5.237815 ACTCTCGTGAAATAATTGCACTCA 58.762 37.500 0.00 0.00 0.00 3.41
5379 6693 5.877012 ACTCTCGTGAAATAATTGCACTCAT 59.123 36.000 0.00 0.00 0.00 2.90
5380 6694 6.110543 TCTCGTGAAATAATTGCACTCATG 57.889 37.500 0.00 0.00 0.00 3.07
5381 6695 5.643348 TCTCGTGAAATAATTGCACTCATGT 59.357 36.000 0.00 0.00 0.00 3.21
5382 6696 5.630061 TCGTGAAATAATTGCACTCATGTG 58.370 37.500 0.00 0.00 46.37 3.21
5383 6697 5.181056 TCGTGAAATAATTGCACTCATGTGT 59.819 36.000 0.00 0.00 45.44 3.72
5384 6698 5.858049 CGTGAAATAATTGCACTCATGTGTT 59.142 36.000 0.00 0.00 45.44 3.32
5385 6699 6.363088 CGTGAAATAATTGCACTCATGTGTTT 59.637 34.615 0.00 0.00 45.44 2.83
5386 6700 7.503991 GTGAAATAATTGCACTCATGTGTTTG 58.496 34.615 0.00 0.00 45.44 2.93
5387 6701 6.645827 TGAAATAATTGCACTCATGTGTTTGG 59.354 34.615 0.00 0.00 45.44 3.28
5388 6702 2.443887 ATTGCACTCATGTGTTTGGC 57.556 45.000 0.00 0.00 45.44 4.52
5389 6703 1.401761 TTGCACTCATGTGTTTGGCT 58.598 45.000 0.00 0.00 45.44 4.75
5390 6704 1.401761 TGCACTCATGTGTTTGGCTT 58.598 45.000 0.00 0.00 45.44 4.35
5391 6705 1.337703 TGCACTCATGTGTTTGGCTTC 59.662 47.619 0.00 0.00 45.44 3.86
5392 6706 1.336240 GCACTCATGTGTTTGGCTTCC 60.336 52.381 0.00 0.00 45.44 3.46
5393 6707 1.069022 CACTCATGTGTTTGGCTTCCG 60.069 52.381 0.00 0.00 39.24 4.30
5394 6708 0.109597 CTCATGTGTTTGGCTTCCGC 60.110 55.000 0.00 0.00 0.00 5.54
5405 6719 3.291383 CTTCCGCCAACGCCCAAA 61.291 61.111 0.00 0.00 38.22 3.28
5406 6720 3.267597 CTTCCGCCAACGCCCAAAG 62.268 63.158 0.00 0.00 38.22 2.77
5407 6721 3.776347 TTCCGCCAACGCCCAAAGA 62.776 57.895 0.00 0.00 38.22 2.52
5408 6722 3.061848 CCGCCAACGCCCAAAGAT 61.062 61.111 0.00 0.00 38.22 2.40
5409 6723 2.179018 CGCCAACGCCCAAAGATG 59.821 61.111 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.164129 CGACGATACTCACGAAACAAATTCA 60.164 40.000 0.00 0.00 37.96 2.57
1 2 5.238442 CGACGATACTCACGAAACAAATTC 58.762 41.667 0.00 0.00 34.52 2.17
2 3 4.090930 CCGACGATACTCACGAAACAAATT 59.909 41.667 0.00 0.00 34.70 1.82
3 4 3.611113 CCGACGATACTCACGAAACAAAT 59.389 43.478 0.00 0.00 34.70 2.32
4 5 2.981805 CCGACGATACTCACGAAACAAA 59.018 45.455 0.00 0.00 34.70 2.83
5 6 2.030893 ACCGACGATACTCACGAAACAA 60.031 45.455 0.00 0.00 34.70 2.83
6 7 1.536766 ACCGACGATACTCACGAAACA 59.463 47.619 0.00 0.00 34.70 2.83
7 8 2.159599 AGACCGACGATACTCACGAAAC 60.160 50.000 0.00 0.00 34.70 2.78
8 9 2.079158 AGACCGACGATACTCACGAAA 58.921 47.619 0.00 0.00 34.70 3.46
9 10 1.395954 CAGACCGACGATACTCACGAA 59.604 52.381 0.00 0.00 34.70 3.85
10 11 1.004595 CAGACCGACGATACTCACGA 58.995 55.000 0.00 0.00 34.70 4.35
11 12 1.004595 TCAGACCGACGATACTCACG 58.995 55.000 0.00 0.00 0.00 4.35
12 13 2.612672 TCATCAGACCGACGATACTCAC 59.387 50.000 0.00 0.00 0.00 3.51
13 14 2.612672 GTCATCAGACCGACGATACTCA 59.387 50.000 0.00 0.00 38.89 3.41
14 15 2.612672 TGTCATCAGACCGACGATACTC 59.387 50.000 0.00 0.00 44.33 2.59
15 16 2.640184 TGTCATCAGACCGACGATACT 58.360 47.619 0.00 0.00 44.33 2.12
16 17 3.181499 ACTTGTCATCAGACCGACGATAC 60.181 47.826 0.00 0.00 44.33 2.24
17 18 3.014623 ACTTGTCATCAGACCGACGATA 58.985 45.455 0.00 0.00 44.33 2.92
18 19 1.819288 ACTTGTCATCAGACCGACGAT 59.181 47.619 0.00 0.00 44.33 3.73
19 20 1.199327 GACTTGTCATCAGACCGACGA 59.801 52.381 0.00 0.00 44.33 4.20
20 21 1.068541 TGACTTGTCATCAGACCGACG 60.069 52.381 0.00 0.00 44.33 5.12
21 22 2.724977 TGACTTGTCATCAGACCGAC 57.275 50.000 0.00 0.00 44.33 4.79
22 23 3.744238 TTTGACTTGTCATCAGACCGA 57.256 42.857 4.18 0.00 44.33 4.69
23 24 5.163854 GGTTATTTGACTTGTCATCAGACCG 60.164 44.000 4.18 0.00 44.33 4.79
24 25 5.940470 AGGTTATTTGACTTGTCATCAGACC 59.060 40.000 4.18 10.33 44.33 3.85
25 26 6.621596 GCAGGTTATTTGACTTGTCATCAGAC 60.622 42.308 4.18 2.73 45.19 3.51
26 27 5.412594 GCAGGTTATTTGACTTGTCATCAGA 59.587 40.000 4.18 0.00 0.00 3.27
27 28 5.413833 AGCAGGTTATTTGACTTGTCATCAG 59.586 40.000 4.18 0.00 0.00 2.90
28 29 5.316167 AGCAGGTTATTTGACTTGTCATCA 58.684 37.500 4.18 0.00 0.00 3.07
29 30 5.886960 AGCAGGTTATTTGACTTGTCATC 57.113 39.130 4.18 0.00 0.00 2.92
30 31 5.106555 CGAAGCAGGTTATTTGACTTGTCAT 60.107 40.000 4.18 0.00 0.00 3.06
31 32 4.213270 CGAAGCAGGTTATTTGACTTGTCA 59.787 41.667 0.00 0.00 0.00 3.58
32 33 4.213482 ACGAAGCAGGTTATTTGACTTGTC 59.787 41.667 0.00 0.00 0.00 3.18
33 34 4.134563 ACGAAGCAGGTTATTTGACTTGT 58.865 39.130 0.00 0.00 0.00 3.16
34 35 4.749245 ACGAAGCAGGTTATTTGACTTG 57.251 40.909 0.00 0.00 0.00 3.16
35 36 4.819630 TGAACGAAGCAGGTTATTTGACTT 59.180 37.500 0.00 0.00 0.00 3.01
36 37 4.213482 GTGAACGAAGCAGGTTATTTGACT 59.787 41.667 0.00 0.00 0.00 3.41
37 38 4.464112 GTGAACGAAGCAGGTTATTTGAC 58.536 43.478 0.00 0.00 0.00 3.18
38 39 3.500680 GGTGAACGAAGCAGGTTATTTGA 59.499 43.478 0.00 0.00 0.00 2.69
39 40 3.365969 GGGTGAACGAAGCAGGTTATTTG 60.366 47.826 0.00 0.00 0.00 2.32
40 41 2.817844 GGGTGAACGAAGCAGGTTATTT 59.182 45.455 0.00 0.00 0.00 1.40
41 42 2.433436 GGGTGAACGAAGCAGGTTATT 58.567 47.619 0.00 0.00 0.00 1.40
42 43 1.674817 CGGGTGAACGAAGCAGGTTAT 60.675 52.381 0.00 0.00 35.47 1.89
43 44 0.320073 CGGGTGAACGAAGCAGGTTA 60.320 55.000 0.00 0.00 35.47 2.85
44 45 1.597027 CGGGTGAACGAAGCAGGTT 60.597 57.895 0.00 0.00 35.47 3.50
45 46 2.030562 CGGGTGAACGAAGCAGGT 59.969 61.111 0.00 0.00 35.47 4.00
46 47 3.423154 GCGGGTGAACGAAGCAGG 61.423 66.667 0.00 0.00 35.47 4.85
47 48 1.781025 TTTGCGGGTGAACGAAGCAG 61.781 55.000 0.00 0.00 39.11 4.24
48 49 1.377366 TTTTGCGGGTGAACGAAGCA 61.377 50.000 0.00 0.00 35.47 3.91
49 50 0.248702 TTTTTGCGGGTGAACGAAGC 60.249 50.000 0.00 0.00 35.47 3.86
50 51 3.928343 TTTTTGCGGGTGAACGAAG 57.072 47.368 0.00 0.00 35.47 3.79
74 75 3.320826 AGCCAACGAAGCAGGTTATTTTT 59.679 39.130 0.00 0.00 0.00 1.94
75 76 2.890945 AGCCAACGAAGCAGGTTATTTT 59.109 40.909 0.00 0.00 0.00 1.82
79 80 1.674817 GCTAGCCAACGAAGCAGGTTA 60.675 52.381 2.29 0.00 36.26 2.85
130 131 5.634020 GCGATTTGTTTAGTGACTAGTGAGT 59.366 40.000 0.00 0.00 39.20 3.41
187 192 0.615544 ATGGTTGTTGGATGCAGGGG 60.616 55.000 0.00 0.00 0.00 4.79
223 237 1.352156 GGATTCGTCTGCCGTGACAC 61.352 60.000 0.00 0.00 36.82 3.67
224 238 1.080093 GGATTCGTCTGCCGTGACA 60.080 57.895 0.00 0.00 36.82 3.58
237 251 1.092348 GGCCAAACGTGTAGGGATTC 58.908 55.000 0.00 0.00 0.00 2.52
268 282 3.112126 GAACCGTGATGCATGGCCG 62.112 63.158 2.46 2.83 43.81 6.13
270 284 1.137404 GTGAACCGTGATGCATGGC 59.863 57.895 2.46 0.00 43.81 4.40
322 336 9.030301 AGCAAATTATGGATTAATAAAACACGC 57.970 29.630 0.00 0.00 30.11 5.34
331 345 7.264221 TCGTTTGCAGCAAATTATGGATTAAT 58.736 30.769 23.26 0.00 35.74 1.40
335 349 4.158394 ACTCGTTTGCAGCAAATTATGGAT 59.842 37.500 23.26 3.84 35.74 3.41
373 387 2.159057 GCATAAATTGGTTGGCAGGGAG 60.159 50.000 0.00 0.00 0.00 4.30
381 395 8.603181 GCTAACCATTTAAGCATAAATTGGTTG 58.397 33.333 28.27 22.89 45.35 3.77
394 408 9.836076 GTACAACTTAAAGGCTAACCATTTAAG 57.164 33.333 14.77 14.77 43.42 1.85
397 411 6.569035 GCGTACAACTTAAAGGCTAACCATTT 60.569 38.462 0.00 0.00 39.06 2.32
407 421 1.997606 CTCCGGCGTACAACTTAAAGG 59.002 52.381 6.01 0.00 0.00 3.11
408 422 2.680577 ACTCCGGCGTACAACTTAAAG 58.319 47.619 6.01 0.00 0.00 1.85
421 507 2.033194 CGGGAAGACAAACTCCGGC 61.033 63.158 0.00 0.00 33.95 6.13
423 509 0.389948 CTCCGGGAAGACAAACTCCG 60.390 60.000 0.00 0.00 36.27 4.63
431 517 3.190744 GGAAACATTTTCTCCGGGAAGAC 59.809 47.826 0.00 0.00 35.16 3.01
433 519 3.153919 TGGAAACATTTTCTCCGGGAAG 58.846 45.455 0.00 0.00 32.81 3.46
451 556 6.601613 ACACAGAAGTTTTTGTAGTTGATGGA 59.398 34.615 0.00 0.00 0.00 3.41
454 559 8.076178 GCATACACAGAAGTTTTTGTAGTTGAT 58.924 33.333 0.00 0.00 0.00 2.57
457 562 7.282224 TCTGCATACACAGAAGTTTTTGTAGTT 59.718 33.333 0.00 0.00 43.59 2.24
485 590 6.619801 AGTCGCATAGAAGTCTTTGTTTTT 57.380 33.333 1.55 0.00 0.00 1.94
486 591 6.564125 CGAAGTCGCATAGAAGTCTTTGTTTT 60.564 38.462 1.55 0.00 0.00 2.43
487 592 5.107453 CGAAGTCGCATAGAAGTCTTTGTTT 60.107 40.000 1.55 0.00 0.00 2.83
488 593 4.386049 CGAAGTCGCATAGAAGTCTTTGTT 59.614 41.667 1.55 0.00 0.00 2.83
489 594 3.921021 CGAAGTCGCATAGAAGTCTTTGT 59.079 43.478 1.55 0.00 0.00 2.83
490 595 4.491554 CGAAGTCGCATAGAAGTCTTTG 57.508 45.455 0.00 0.00 0.00 2.77
521 626 5.092554 GGACAACCCCTTTCTTTCAAAAA 57.907 39.130 0.00 0.00 0.00 1.94
522 627 4.746535 GGACAACCCCTTTCTTTCAAAA 57.253 40.909 0.00 0.00 0.00 2.44
543 648 1.146152 TCTATAAAATTGGGGCGGGGG 59.854 52.381 0.00 0.00 0.00 5.40
544 649 2.668144 TCTATAAAATTGGGGCGGGG 57.332 50.000 0.00 0.00 0.00 5.73
545 650 4.148838 TCAATCTATAAAATTGGGGCGGG 58.851 43.478 7.36 0.00 35.32 6.13
546 651 5.772521 CTTCAATCTATAAAATTGGGGCGG 58.227 41.667 7.36 0.00 35.32 6.13
547 652 5.221224 TGCTTCAATCTATAAAATTGGGGCG 60.221 40.000 7.36 0.00 36.15 6.13
548 653 6.040842 TCTGCTTCAATCTATAAAATTGGGGC 59.959 38.462 7.36 10.53 35.32 5.80
549 654 7.587037 TCTGCTTCAATCTATAAAATTGGGG 57.413 36.000 7.36 3.65 35.32 4.96
550 655 9.472361 CATTCTGCTTCAATCTATAAAATTGGG 57.528 33.333 7.36 3.89 35.32 4.12
551 656 8.975439 GCATTCTGCTTCAATCTATAAAATTGG 58.025 33.333 7.36 0.00 40.96 3.16
552 657 8.688184 CGCATTCTGCTTCAATCTATAAAATTG 58.312 33.333 0.00 2.45 42.25 2.32
553 658 8.623903 TCGCATTCTGCTTCAATCTATAAAATT 58.376 29.630 0.00 0.00 42.25 1.82
554 659 8.072567 GTCGCATTCTGCTTCAATCTATAAAAT 58.927 33.333 0.00 0.00 42.25 1.82
555 660 7.280876 AGTCGCATTCTGCTTCAATCTATAAAA 59.719 33.333 0.00 0.00 42.25 1.52
556 661 6.763135 AGTCGCATTCTGCTTCAATCTATAAA 59.237 34.615 0.00 0.00 42.25 1.40
557 662 6.283694 AGTCGCATTCTGCTTCAATCTATAA 58.716 36.000 0.00 0.00 42.25 0.98
558 663 5.847304 AGTCGCATTCTGCTTCAATCTATA 58.153 37.500 0.00 0.00 42.25 1.31
559 664 4.701765 AGTCGCATTCTGCTTCAATCTAT 58.298 39.130 0.00 0.00 42.25 1.98
560 665 4.128925 AGTCGCATTCTGCTTCAATCTA 57.871 40.909 0.00 0.00 42.25 1.98
561 666 2.983229 AGTCGCATTCTGCTTCAATCT 58.017 42.857 0.00 0.00 42.25 2.40
562 667 3.125829 TGAAGTCGCATTCTGCTTCAATC 59.874 43.478 0.00 0.00 42.66 2.67
563 668 3.076621 TGAAGTCGCATTCTGCTTCAAT 58.923 40.909 0.00 0.00 42.66 2.57
564 669 2.493035 TGAAGTCGCATTCTGCTTCAA 58.507 42.857 0.00 0.00 42.66 2.69
565 670 2.168326 TGAAGTCGCATTCTGCTTCA 57.832 45.000 0.00 0.00 42.25 3.02
566 671 2.674852 TGATGAAGTCGCATTCTGCTTC 59.325 45.455 0.00 0.00 42.25 3.86
567 672 2.703416 TGATGAAGTCGCATTCTGCTT 58.297 42.857 0.00 0.00 42.25 3.91
568 673 2.391616 TGATGAAGTCGCATTCTGCT 57.608 45.000 0.00 0.00 42.25 4.24
569 674 3.311871 AGATTGATGAAGTCGCATTCTGC 59.688 43.478 0.00 0.00 40.69 4.26
570 675 4.569564 TGAGATTGATGAAGTCGCATTCTG 59.430 41.667 0.00 0.00 0.00 3.02
571 676 4.763073 TGAGATTGATGAAGTCGCATTCT 58.237 39.130 0.00 0.00 0.00 2.40
572 677 5.292834 TCTTGAGATTGATGAAGTCGCATTC 59.707 40.000 0.00 0.00 0.00 2.67
573 678 5.181009 TCTTGAGATTGATGAAGTCGCATT 58.819 37.500 0.00 0.00 0.00 3.56
574 679 4.763073 TCTTGAGATTGATGAAGTCGCAT 58.237 39.130 0.00 0.00 0.00 4.73
575 680 4.192429 TCTTGAGATTGATGAAGTCGCA 57.808 40.909 0.00 0.00 0.00 5.10
576 681 6.834959 TTATCTTGAGATTGATGAAGTCGC 57.165 37.500 0.00 0.00 36.05 5.19
605 710 8.906636 ATGATCATTTTTGAAAGACTGAATCG 57.093 30.769 1.18 0.00 0.00 3.34
622 727 9.404848 CATGCATACCCTATCTTTATGATCATT 57.595 33.333 14.65 0.00 36.65 2.57
623 728 8.554870 ACATGCATACCCTATCTTTATGATCAT 58.445 33.333 13.81 13.81 36.65 2.45
626 731 7.693132 ACACATGCATACCCTATCTTTATGAT 58.307 34.615 0.00 0.00 39.11 2.45
753 1878 1.067743 CGTACTGACTGAGCACTGCG 61.068 60.000 0.00 0.00 0.00 5.18
764 1889 1.511464 CCTCGCGTCACGTACTGAC 60.511 63.158 5.77 12.68 45.38 3.51
942 2067 0.394565 ATTATCTGGCGAGGTCTGGC 59.605 55.000 0.00 0.00 0.00 4.85
1225 2356 3.838271 TCCACGGAGGAGCATCGC 61.838 66.667 0.00 0.00 43.07 4.58
1248 2379 1.957177 GGACAGACAGACAGACAGACA 59.043 52.381 0.00 0.00 0.00 3.41
1249 2380 1.068885 CGGACAGACAGACAGACAGAC 60.069 57.143 0.00 0.00 0.00 3.51
1250 2381 1.239347 CGGACAGACAGACAGACAGA 58.761 55.000 0.00 0.00 0.00 3.41
1251 2382 0.955178 ACGGACAGACAGACAGACAG 59.045 55.000 0.00 0.00 0.00 3.51
1343 2478 3.518634 AAATTTGTGTTGCGGAGTTGT 57.481 38.095 0.00 0.00 0.00 3.32
1384 2520 4.599047 CTGCTTATGATTTCAGCTTCTGC 58.401 43.478 0.00 0.00 40.05 4.26
1411 2547 7.728981 CCTCAATCTACAGGTAACCCTATTCTA 59.271 40.741 0.00 0.00 39.89 2.10
1413 2549 6.326843 ACCTCAATCTACAGGTAACCCTATTC 59.673 42.308 0.00 0.00 41.55 1.75
1414 2550 6.099845 CACCTCAATCTACAGGTAACCCTATT 59.900 42.308 0.00 0.00 41.41 1.73
1416 2552 4.960469 CACCTCAATCTACAGGTAACCCTA 59.040 45.833 0.00 0.00 41.41 3.53
1417 2553 3.775316 CACCTCAATCTACAGGTAACCCT 59.225 47.826 0.00 0.00 41.41 4.34
1418 2554 3.518303 ACACCTCAATCTACAGGTAACCC 59.482 47.826 0.00 0.00 41.41 4.11
1472 2608 3.764237 TTCTTTGTCAGTGGGAGGTAC 57.236 47.619 0.00 0.00 0.00 3.34
1577 2713 8.794553 AGTACATCGACTCGATAGGATTAAAAT 58.205 33.333 13.54 0.00 45.19 1.82
1626 2762 6.336842 AGATTTCTGCAAACAATACAAGCT 57.663 33.333 0.00 0.00 0.00 3.74
1988 3198 5.202765 TCACATAACGGGTTGACCTAGATA 58.797 41.667 0.00 0.00 36.97 1.98
2060 3270 7.530426 TCTACAGAGATAATAAGAGCATGCA 57.470 36.000 21.98 0.00 0.00 3.96
2082 3292 6.796705 AGTAACGTTGAATTCCGATTTTCT 57.203 33.333 11.99 0.00 0.00 2.52
2083 3293 7.736447 AGTAGTAACGTTGAATTCCGATTTTC 58.264 34.615 11.99 0.00 0.00 2.29
2091 3303 8.511465 TTACAGTGAGTAGTAACGTTGAATTC 57.489 34.615 11.99 0.00 33.43 2.17
2102 3314 5.306160 ACTGCCCTTTTTACAGTGAGTAGTA 59.694 40.000 0.00 0.00 42.83 1.82
2125 3337 5.179368 TGCAGCAAACTGTTCTGATAACTAC 59.821 40.000 12.00 0.00 46.30 2.73
2126 3338 5.179368 GTGCAGCAAACTGTTCTGATAACTA 59.821 40.000 12.00 0.00 46.30 2.24
2127 3339 4.023707 GTGCAGCAAACTGTTCTGATAACT 60.024 41.667 12.00 0.00 46.30 2.24
2197 3409 5.679734 ACTATGCAACATGAATCGGATTC 57.320 39.130 21.08 21.08 39.70 2.52
2232 3444 6.919721 ACAATTGTACCAGCATTAAAATCGT 58.080 32.000 9.97 0.00 0.00 3.73
2250 3462 7.169308 ACGTCTAAGTACAGAAGACAACAATTG 59.831 37.037 17.26 3.24 39.69 2.32
2256 3468 6.567050 ACAAACGTCTAAGTACAGAAGACAA 58.433 36.000 17.26 0.00 39.69 3.18
2263 3475 7.303261 TCTATGTGACAAACGTCTAAGTACAG 58.697 38.462 0.00 0.00 34.31 2.74
2308 3520 3.986996 AATGGAAGGGCATGGAAAAAG 57.013 42.857 0.00 0.00 0.00 2.27
2362 3574 3.909776 TGTTTTCATCTGCTGCTTCTG 57.090 42.857 0.00 0.00 0.00 3.02
2414 3626 2.289882 TGATCAAGGTCAGTGCTTCTGG 60.290 50.000 0.00 0.00 43.76 3.86
2416 3628 3.072184 AGTTGATCAAGGTCAGTGCTTCT 59.928 43.478 8.80 0.00 0.00 2.85
2420 3632 5.886960 AATAAGTTGATCAAGGTCAGTGC 57.113 39.130 8.80 0.00 0.00 4.40
2473 3685 7.875971 AGTGAATAAAGCAAAGTTTTCGATCT 58.124 30.769 0.00 0.00 0.00 2.75
2505 3718 6.978080 GCTTGTTCAAATTTCCTGTCTTGTTA 59.022 34.615 0.00 0.00 0.00 2.41
2538 3751 4.322080 AAGAAAGCAAAAGGTACCAAGC 57.678 40.909 15.94 11.90 0.00 4.01
2547 3760 5.335127 AGTGCGCATATAAGAAAGCAAAAG 58.665 37.500 15.91 0.00 36.32 2.27
2608 3828 9.000486 GTAACTTTAGGTGATAATTATCCCTGC 58.000 37.037 28.34 15.95 35.96 4.85
2660 3880 5.279910 GGAGAGCCTGTATTCAGCATTAGAT 60.280 44.000 0.00 0.00 40.09 1.98
2892 4117 7.198390 CGAGATTGCAATTGGAGAATATGTTT 58.802 34.615 14.33 0.00 0.00 2.83
2912 4137 4.963318 TTCCATAGAATCCAAGCGAGAT 57.037 40.909 0.00 0.00 0.00 2.75
2998 4223 0.996583 AGGAGAGACCGAGAGAGGTT 59.003 55.000 0.00 0.00 46.09 3.50
3059 4284 7.601130 GTCAACACAATAACCACACTACTGATA 59.399 37.037 0.00 0.00 0.00 2.15
3089 4314 7.133133 ACGTTAATTGACAGGGGTATAGAAT 57.867 36.000 0.95 0.00 0.00 2.40
3302 4527 3.323775 GGGTCTGGGGAAGGATTATACA 58.676 50.000 0.00 0.00 0.00 2.29
3416 4641 6.271159 ACATCTAAAACTGAGAACTCCCTCTT 59.729 38.462 0.00 0.00 34.38 2.85
3418 4643 6.043854 ACATCTAAAACTGAGAACTCCCTC 57.956 41.667 0.00 0.00 0.00 4.30
3419 4644 6.441088 AACATCTAAAACTGAGAACTCCCT 57.559 37.500 0.00 0.00 0.00 4.20
3420 4645 8.794335 ATAAACATCTAAAACTGAGAACTCCC 57.206 34.615 0.00 0.00 0.00 4.30
3504 4729 9.137459 TGAATTCTTGATACAAAAAGGTAACCA 57.863 29.630 7.05 0.00 37.17 3.67
3505 4730 9.406828 GTGAATTCTTGATACAAAAAGGTAACC 57.593 33.333 7.05 0.00 37.17 2.85
3550 4775 7.251321 AGAAAGTAAGATCACCTCAGACATT 57.749 36.000 0.00 0.00 0.00 2.71
3554 4779 6.573289 GCTGAAGAAAGTAAGATCACCTCAGA 60.573 42.308 0.00 0.00 0.00 3.27
3562 4787 6.952935 TTTCTCGCTGAAGAAAGTAAGATC 57.047 37.500 2.71 0.00 39.67 2.75
3637 4863 7.398618 TCCCAATAAAATTCTCAAGCAATGGTA 59.601 33.333 0.00 0.00 0.00 3.25
3638 4864 6.213195 TCCCAATAAAATTCTCAAGCAATGGT 59.787 34.615 0.00 0.00 0.00 3.55
3639 4865 6.642430 TCCCAATAAAATTCTCAAGCAATGG 58.358 36.000 0.00 0.00 0.00 3.16
3640 4866 7.254658 GCATCCCAATAAAATTCTCAAGCAATG 60.255 37.037 0.00 0.00 0.00 2.82
3641 4867 6.764560 GCATCCCAATAAAATTCTCAAGCAAT 59.235 34.615 0.00 0.00 0.00 3.56
3642 4868 6.070653 AGCATCCCAATAAAATTCTCAAGCAA 60.071 34.615 0.00 0.00 0.00 3.91
3643 4869 5.422970 AGCATCCCAATAAAATTCTCAAGCA 59.577 36.000 0.00 0.00 0.00 3.91
3644 4870 5.910614 AGCATCCCAATAAAATTCTCAAGC 58.089 37.500 0.00 0.00 0.00 4.01
3647 4873 9.425248 AGAATAAGCATCCCAATAAAATTCTCA 57.575 29.630 0.00 0.00 0.00 3.27
3902 5128 2.205911 GAACCTGAGAAGCTTATCCGC 58.794 52.381 18.02 0.00 0.00 5.54
3923 5149 2.508300 AGACACAAAACAGGTACCCAGT 59.492 45.455 8.74 4.86 0.00 4.00
3946 5172 3.812156 AAAACAGTTAGTGGCCCAAAC 57.188 42.857 0.00 1.60 0.00 2.93
4071 5298 2.276309 CTGATGGTGGAGGGGGCTTC 62.276 65.000 0.00 0.00 0.00 3.86
4165 5392 1.238615 ATGAGGGGCTGAAATGGGAT 58.761 50.000 0.00 0.00 0.00 3.85
4194 5421 2.279451 CGCGCAAGATGATCCCGA 60.279 61.111 8.75 0.00 43.02 5.14
4308 5535 2.940971 GCATACACCTGAACAGCCATCA 60.941 50.000 0.00 0.00 0.00 3.07
4376 5603 1.769665 TGGCATTTCCAGGAGCTGT 59.230 52.632 0.00 0.00 40.72 4.40
4392 5619 2.849942 TCACAACCTCATGTCACTTGG 58.150 47.619 0.00 0.00 0.00 3.61
4402 5629 1.710244 ACCATGGGAATCACAACCTCA 59.290 47.619 18.09 0.00 0.00 3.86
4403 5630 2.094675 CACCATGGGAATCACAACCTC 58.905 52.381 18.09 0.00 0.00 3.85
4595 5830 1.336887 GCTACTCCGCAGTCAACTCAA 60.337 52.381 0.00 0.00 33.62 3.02
4603 5838 2.044650 TACCCGCTACTCCGCAGT 60.045 61.111 0.00 0.00 36.55 4.40
4643 5878 3.564225 ACGAGGAAGCGAAAAGAAACAAT 59.436 39.130 0.00 0.00 34.83 2.71
4700 5935 4.819630 ACAAAAGAGTCGCAAAGGTTGATA 59.180 37.500 0.00 0.00 0.00 2.15
4838 6073 1.739562 GCGTTGGCTCAGGACAGAG 60.740 63.158 0.00 0.00 38.68 3.35
4839 6074 2.343758 GCGTTGGCTCAGGACAGA 59.656 61.111 0.00 0.00 35.83 3.41
4883 6128 1.837439 CCATAACACCTCCAGGCTACA 59.163 52.381 0.00 0.00 39.32 2.74
4896 6141 3.964031 ACAAAGAAAGGTTGCCCATAACA 59.036 39.130 0.00 0.00 32.22 2.41
4910 6162 5.576447 GAAGAACCACTTCCACAAAGAAA 57.424 39.130 0.00 0.00 46.48 2.52
4958 6210 5.064579 AGCCTGGAAAACGAAAACAAAATTG 59.935 36.000 0.00 0.00 0.00 2.32
4959 6211 5.182487 AGCCTGGAAAACGAAAACAAAATT 58.818 33.333 0.00 0.00 0.00 1.82
4960 6212 4.765273 AGCCTGGAAAACGAAAACAAAAT 58.235 34.783 0.00 0.00 0.00 1.82
4981 6233 3.431486 GGCACTAAAGGATGGTCTCTGAG 60.431 52.174 0.00 0.00 0.00 3.35
5031 6292 2.540101 CCTTTAAGCCTTCATCTACGCG 59.460 50.000 3.53 3.53 0.00 6.01
5050 6311 2.901839 ACCATGCAAATCAAAGAAGCCT 59.098 40.909 0.00 0.00 0.00 4.58
5066 6328 8.679100 TCCATTTATACGTTTAAGGAAACCATG 58.321 33.333 0.00 0.00 41.72 3.66
5211 6525 6.567511 GCAAGTCTTTTGCCTTGTTTCAAAAA 60.568 34.615 0.54 0.00 40.36 1.94
5212 6526 5.106752 GCAAGTCTTTTGCCTTGTTTCAAAA 60.107 36.000 0.54 0.00 40.13 2.44
5213 6527 4.391523 GCAAGTCTTTTGCCTTGTTTCAAA 59.608 37.500 0.54 0.00 40.13 2.69
5214 6528 3.932089 GCAAGTCTTTTGCCTTGTTTCAA 59.068 39.130 0.54 0.00 40.13 2.69
5215 6529 3.520569 GCAAGTCTTTTGCCTTGTTTCA 58.479 40.909 0.54 0.00 40.13 2.69
5224 6538 5.678132 AATGAAATTGGCAAGTCTTTTGC 57.322 34.783 5.96 3.39 44.22 3.68
5234 6548 9.874205 CCTTCTTCTTAATTAATGAAATTGGCA 57.126 29.630 0.00 0.00 38.29 4.92
5235 6549 9.875691 ACCTTCTTCTTAATTAATGAAATTGGC 57.124 29.630 0.00 0.00 38.29 4.52
5247 6561 9.967346 GCTTTTGTCTAAACCTTCTTCTTAATT 57.033 29.630 0.00 0.00 0.00 1.40
5248 6562 8.577296 GGCTTTTGTCTAAACCTTCTTCTTAAT 58.423 33.333 0.00 0.00 0.00 1.40
5249 6563 7.255001 CGGCTTTTGTCTAAACCTTCTTCTTAA 60.255 37.037 0.00 0.00 0.00 1.85
5250 6564 6.204108 CGGCTTTTGTCTAAACCTTCTTCTTA 59.796 38.462 0.00 0.00 0.00 2.10
5251 6565 5.008712 CGGCTTTTGTCTAAACCTTCTTCTT 59.991 40.000 0.00 0.00 0.00 2.52
5252 6566 4.515567 CGGCTTTTGTCTAAACCTTCTTCT 59.484 41.667 0.00 0.00 0.00 2.85
5253 6567 4.784329 CGGCTTTTGTCTAAACCTTCTTC 58.216 43.478 0.00 0.00 0.00 2.87
5254 6568 3.004419 GCGGCTTTTGTCTAAACCTTCTT 59.996 43.478 0.00 0.00 0.00 2.52
5255 6569 2.552743 GCGGCTTTTGTCTAAACCTTCT 59.447 45.455 0.00 0.00 0.00 2.85
5256 6570 2.292292 TGCGGCTTTTGTCTAAACCTTC 59.708 45.455 0.00 0.00 0.00 3.46
5257 6571 2.303175 TGCGGCTTTTGTCTAAACCTT 58.697 42.857 0.00 0.00 0.00 3.50
5258 6572 1.975660 TGCGGCTTTTGTCTAAACCT 58.024 45.000 0.00 0.00 0.00 3.50
5259 6573 2.785713 TTGCGGCTTTTGTCTAAACC 57.214 45.000 0.00 0.00 0.00 3.27
5260 6574 2.471370 GCTTTGCGGCTTTTGTCTAAAC 59.529 45.455 0.00 0.00 0.00 2.01
5261 6575 2.738135 GCTTTGCGGCTTTTGTCTAAA 58.262 42.857 0.00 0.00 0.00 1.85
5262 6576 2.415697 GCTTTGCGGCTTTTGTCTAA 57.584 45.000 0.00 0.00 0.00 2.10
5275 6589 3.740832 AGTCTTTTATTTTGCCGCTTTGC 59.259 39.130 0.00 0.00 0.00 3.68
5276 6590 6.149633 AGTAGTCTTTTATTTTGCCGCTTTG 58.850 36.000 0.00 0.00 0.00 2.77
5277 6591 6.206829 AGAGTAGTCTTTTATTTTGCCGCTTT 59.793 34.615 0.00 0.00 0.00 3.51
5278 6592 5.705905 AGAGTAGTCTTTTATTTTGCCGCTT 59.294 36.000 0.00 0.00 0.00 4.68
5279 6593 5.246307 AGAGTAGTCTTTTATTTTGCCGCT 58.754 37.500 0.00 0.00 0.00 5.52
5280 6594 5.547181 AGAGTAGTCTTTTATTTTGCCGC 57.453 39.130 0.00 0.00 0.00 6.53
5281 6595 5.724223 GCGAGAGTAGTCTTTTATTTTGCCG 60.724 44.000 0.56 0.00 30.97 5.69
5282 6596 5.561070 GCGAGAGTAGTCTTTTATTTTGCC 58.439 41.667 0.56 0.00 30.97 4.52
5283 6597 5.061808 TCGCGAGAGTAGTCTTTTATTTTGC 59.938 40.000 3.71 0.00 30.97 3.68
5284 6598 6.627690 TCGCGAGAGTAGTCTTTTATTTTG 57.372 37.500 3.71 0.00 30.97 2.44
5299 6613 9.437427 CACATGAGTGCAATTATATCGCGAGAG 62.437 44.444 16.66 0.00 40.88 3.20
5300 6614 7.761849 CACATGAGTGCAATTATATCGCGAGA 61.762 42.308 16.66 11.47 41.51 4.04
5301 6615 4.386954 ACATGAGTGCAATTATATCGCGAG 59.613 41.667 16.66 0.00 0.00 5.03
5302 6616 4.150451 CACATGAGTGCAATTATATCGCGA 59.850 41.667 13.09 13.09 39.21 5.87
5303 6617 4.388790 CACATGAGTGCAATTATATCGCG 58.611 43.478 0.00 0.00 39.21 5.87
5316 6630 4.098770 GCTTTGAGCCAAACACATGAGTG 61.099 47.826 0.00 0.00 42.77 3.51
5317 6631 2.035066 GCTTTGAGCCAAACACATGAGT 59.965 45.455 0.00 0.00 34.48 3.41
5318 6632 2.669364 GCTTTGAGCCAAACACATGAG 58.331 47.619 0.00 0.00 34.48 2.90
5319 6633 1.001487 CGCTTTGAGCCAAACACATGA 60.001 47.619 0.00 0.00 38.18 3.07
5320 6634 1.411394 CGCTTTGAGCCAAACACATG 58.589 50.000 0.00 0.00 38.18 3.21
5321 6635 0.314935 CCGCTTTGAGCCAAACACAT 59.685 50.000 0.00 0.00 38.18 3.21
5322 6636 1.732917 CCGCTTTGAGCCAAACACA 59.267 52.632 0.00 0.00 38.18 3.72
5323 6637 1.661509 GCCGCTTTGAGCCAAACAC 60.662 57.895 0.00 0.00 38.18 3.32
5324 6638 1.670949 TTGCCGCTTTGAGCCAAACA 61.671 50.000 0.00 0.00 38.18 2.83
5325 6639 0.529555 TTTGCCGCTTTGAGCCAAAC 60.530 50.000 0.00 0.00 38.18 2.93
5326 6640 0.176680 TTTTGCCGCTTTGAGCCAAA 59.823 45.000 0.00 0.00 38.18 3.28
5327 6641 0.392336 ATTTTGCCGCTTTGAGCCAA 59.608 45.000 0.00 0.00 38.18 4.52
5328 6642 1.252175 TATTTTGCCGCTTTGAGCCA 58.748 45.000 0.00 0.00 38.18 4.75
5329 6643 2.362169 TTATTTTGCCGCTTTGAGCC 57.638 45.000 0.00 0.00 38.18 4.70
5330 6644 3.987220 TCTTTTATTTTGCCGCTTTGAGC 59.013 39.130 0.00 0.00 38.02 4.26
5331 6645 5.222631 AGTCTTTTATTTTGCCGCTTTGAG 58.777 37.500 0.00 0.00 0.00 3.02
5332 6646 5.195001 AGTCTTTTATTTTGCCGCTTTGA 57.805 34.783 0.00 0.00 0.00 2.69
5333 6647 6.149633 AGTAGTCTTTTATTTTGCCGCTTTG 58.850 36.000 0.00 0.00 0.00 2.77
5334 6648 6.206829 AGAGTAGTCTTTTATTTTGCCGCTTT 59.793 34.615 0.00 0.00 0.00 3.51
5335 6649 5.705905 AGAGTAGTCTTTTATTTTGCCGCTT 59.294 36.000 0.00 0.00 0.00 4.68
5336 6650 5.246307 AGAGTAGTCTTTTATTTTGCCGCT 58.754 37.500 0.00 0.00 0.00 5.52
5337 6651 5.547181 AGAGTAGTCTTTTATTTTGCCGC 57.453 39.130 0.00 0.00 0.00 6.53
5338 6652 5.347907 ACGAGAGTAGTCTTTTATTTTGCCG 59.652 40.000 0.56 0.00 46.88 5.69
5339 6653 6.723131 ACGAGAGTAGTCTTTTATTTTGCC 57.277 37.500 0.56 0.00 46.88 4.52
5356 6670 5.784750 TGAGTGCAATTATTTCACGAGAG 57.215 39.130 2.43 0.00 35.97 3.20
5357 6671 5.643348 ACATGAGTGCAATTATTTCACGAGA 59.357 36.000 0.00 0.00 35.97 4.04
5358 6672 5.735892 CACATGAGTGCAATTATTTCACGAG 59.264 40.000 0.00 0.00 39.21 4.18
5359 6673 5.630061 CACATGAGTGCAATTATTTCACGA 58.370 37.500 0.00 0.00 39.21 4.35
5360 6674 5.920085 CACATGAGTGCAATTATTTCACG 57.080 39.130 0.00 0.00 39.21 4.35
5374 6688 1.238439 CGGAAGCCAAACACATGAGT 58.762 50.000 0.00 0.00 0.00 3.41
5388 6702 3.267597 CTTTGGGCGTTGGCGGAAG 62.268 63.158 0.00 0.00 41.24 3.46
5389 6703 3.291383 CTTTGGGCGTTGGCGGAA 61.291 61.111 0.00 0.00 41.24 4.30
5390 6704 3.561120 ATCTTTGGGCGTTGGCGGA 62.561 57.895 0.00 0.00 41.24 5.54
5391 6705 3.061848 ATCTTTGGGCGTTGGCGG 61.062 61.111 0.00 0.00 41.24 6.13
5392 6706 2.179018 CATCTTTGGGCGTTGGCG 59.821 61.111 0.00 0.00 41.24 5.69
5393 6707 2.573340 CCATCTTTGGGCGTTGGC 59.427 61.111 0.00 0.00 39.56 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.