Multiple sequence alignment - TraesCS5A01G070200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G070200 chr5A 100.000 4230 0 0 1 4230 78445520 78441291 0.000000e+00 7812
1 TraesCS5A01G070200 chr5A 89.525 2167 119 49 1647 3761 697625373 697627483 0.000000e+00 2645
2 TraesCS5A01G070200 chr5A 91.084 1918 90 27 2350 4230 593748120 593749993 0.000000e+00 2519
3 TraesCS5A01G070200 chr5A 88.545 323 33 4 15 335 460536821 460537141 5.130000e-104 388
4 TraesCS5A01G070200 chr4D 92.290 2633 121 32 1647 4230 392724846 392722247 0.000000e+00 3663
5 TraesCS5A01G070200 chr4D 86.803 879 91 17 1647 2516 428621339 428622201 0.000000e+00 957
6 TraesCS5A01G070200 chr7D 92.302 2624 131 29 1647 4230 538836051 538838643 0.000000e+00 3661
7 TraesCS5A01G070200 chr7D 91.951 2634 131 29 1647 4230 112191309 112188707 0.000000e+00 3615
8 TraesCS5A01G070200 chr7D 91.141 2630 121 39 1647 4230 426837236 426834673 0.000000e+00 3463
9 TraesCS5A01G070200 chr7D 90.893 1724 95 25 1648 3322 445228926 445230636 0.000000e+00 2257
10 TraesCS5A01G070200 chr7D 86.000 750 67 22 1640 2365 630112678 630113413 0.000000e+00 769
11 TraesCS5A01G070200 chr5D 91.742 2640 124 34 1642 4230 422770361 422772957 0.000000e+00 3581
12 TraesCS5A01G070200 chr5D 91.503 2648 120 42 1647 4230 52374527 52371921 0.000000e+00 3546
13 TraesCS5A01G070200 chr5D 91.103 2630 125 32 1647 4230 356119496 356116930 0.000000e+00 3459
14 TraesCS5A01G070200 chr5D 89.765 2638 168 37 1650 4230 391329769 391327177 0.000000e+00 3282
15 TraesCS5A01G070200 chr5D 91.978 1097 47 20 333 1419 83920283 83919218 0.000000e+00 1500
16 TraesCS5A01G070200 chr5D 91.770 243 11 2 1404 1646 83918197 83917964 3.150000e-86 329
17 TraesCS5A01G070200 chr3D 91.825 2630 123 32 1647 4230 52842442 52845025 0.000000e+00 3581
18 TraesCS5A01G070200 chr3D 94.002 967 39 3 3265 4230 534218112 534217164 0.000000e+00 1447
19 TraesCS5A01G070200 chr5B 91.692 2612 111 23 1648 4230 461488709 461486175 0.000000e+00 3524
20 TraesCS5A01G070200 chr5B 94.989 1317 52 8 339 1646 91004216 91002905 0.000000e+00 2054
21 TraesCS5A01G070200 chr5B 86.414 1266 102 35 2722 3976 39754081 39755287 0.000000e+00 1321
22 TraesCS5A01G070200 chr5B 85.562 1129 89 33 1647 2726 39544674 39545777 0.000000e+00 1114
23 TraesCS5A01G070200 chr5B 85.372 1128 92 32 1647 2726 39742450 39743552 0.000000e+00 1101
24 TraesCS5A01G070200 chr7A 90.785 2648 147 33 1642 4230 731435145 731437754 0.000000e+00 3448
25 TraesCS5A01G070200 chr7A 90.255 2155 114 45 1647 3761 658706221 658704123 0.000000e+00 2728
26 TraesCS5A01G070200 chr7A 92.642 299 21 1 37 334 226469933 226470231 3.020000e-116 429
27 TraesCS5A01G070200 chr7A 91.973 299 23 1 37 334 226463870 226464168 6.540000e-113 418
28 TraesCS5A01G070200 chr7A 91.030 301 24 3 37 335 303957221 303956922 1.830000e-108 403
29 TraesCS5A01G070200 chr1A 90.788 2638 153 38 1647 4230 20826471 20823870 0.000000e+00 3443
30 TraesCS5A01G070200 chr1A 90.184 2170 103 52 1647 3761 34337446 34339560 0.000000e+00 2726
31 TraesCS5A01G070200 chr2B 91.779 1776 106 14 2463 4230 629732854 629731111 0.000000e+00 2435
32 TraesCS5A01G070200 chr2B 92.269 802 46 9 1647 2434 629733649 629732850 0.000000e+00 1123
33 TraesCS5A01G070200 chr2B 88.923 325 32 4 15 337 123303630 123303952 8.520000e-107 398
34 TraesCS5A01G070200 chr2D 92.472 1634 67 10 2608 4230 36877806 36876218 0.000000e+00 2285
35 TraesCS5A01G070200 chr4B 88.051 1565 114 35 1647 3172 187439132 187440662 0.000000e+00 1786
36 TraesCS5A01G070200 chr2A 89.970 329 29 4 15 341 766573782 766573456 5.060000e-114 422
37 TraesCS5A01G070200 chr2A 90.033 301 28 2 37 335 534687212 534686912 5.130000e-104 388
38 TraesCS5A01G070200 chr7B 90.373 322 25 6 29 346 20833343 20833662 6.540000e-113 418
39 TraesCS5A01G070200 chr3A 91.000 300 24 3 37 334 596492199 596492497 6.590000e-108 401


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G070200 chr5A 78441291 78445520 4229 True 7812.0 7812 100.000 1 4230 1 chr5A.!!$R1 4229
1 TraesCS5A01G070200 chr5A 697625373 697627483 2110 False 2645.0 2645 89.525 1647 3761 1 chr5A.!!$F3 2114
2 TraesCS5A01G070200 chr5A 593748120 593749993 1873 False 2519.0 2519 91.084 2350 4230 1 chr5A.!!$F2 1880
3 TraesCS5A01G070200 chr4D 392722247 392724846 2599 True 3663.0 3663 92.290 1647 4230 1 chr4D.!!$R1 2583
4 TraesCS5A01G070200 chr4D 428621339 428622201 862 False 957.0 957 86.803 1647 2516 1 chr4D.!!$F1 869
5 TraesCS5A01G070200 chr7D 538836051 538838643 2592 False 3661.0 3661 92.302 1647 4230 1 chr7D.!!$F2 2583
6 TraesCS5A01G070200 chr7D 112188707 112191309 2602 True 3615.0 3615 91.951 1647 4230 1 chr7D.!!$R1 2583
7 TraesCS5A01G070200 chr7D 426834673 426837236 2563 True 3463.0 3463 91.141 1647 4230 1 chr7D.!!$R2 2583
8 TraesCS5A01G070200 chr7D 445228926 445230636 1710 False 2257.0 2257 90.893 1648 3322 1 chr7D.!!$F1 1674
9 TraesCS5A01G070200 chr7D 630112678 630113413 735 False 769.0 769 86.000 1640 2365 1 chr7D.!!$F3 725
10 TraesCS5A01G070200 chr5D 422770361 422772957 2596 False 3581.0 3581 91.742 1642 4230 1 chr5D.!!$F1 2588
11 TraesCS5A01G070200 chr5D 52371921 52374527 2606 True 3546.0 3546 91.503 1647 4230 1 chr5D.!!$R1 2583
12 TraesCS5A01G070200 chr5D 356116930 356119496 2566 True 3459.0 3459 91.103 1647 4230 1 chr5D.!!$R2 2583
13 TraesCS5A01G070200 chr5D 391327177 391329769 2592 True 3282.0 3282 89.765 1650 4230 1 chr5D.!!$R3 2580
14 TraesCS5A01G070200 chr5D 83917964 83920283 2319 True 914.5 1500 91.874 333 1646 2 chr5D.!!$R4 1313
15 TraesCS5A01G070200 chr3D 52842442 52845025 2583 False 3581.0 3581 91.825 1647 4230 1 chr3D.!!$F1 2583
16 TraesCS5A01G070200 chr3D 534217164 534218112 948 True 1447.0 1447 94.002 3265 4230 1 chr3D.!!$R1 965
17 TraesCS5A01G070200 chr5B 461486175 461488709 2534 True 3524.0 3524 91.692 1648 4230 1 chr5B.!!$R2 2582
18 TraesCS5A01G070200 chr5B 91002905 91004216 1311 True 2054.0 2054 94.989 339 1646 1 chr5B.!!$R1 1307
19 TraesCS5A01G070200 chr5B 39754081 39755287 1206 False 1321.0 1321 86.414 2722 3976 1 chr5B.!!$F3 1254
20 TraesCS5A01G070200 chr5B 39544674 39545777 1103 False 1114.0 1114 85.562 1647 2726 1 chr5B.!!$F1 1079
21 TraesCS5A01G070200 chr5B 39742450 39743552 1102 False 1101.0 1101 85.372 1647 2726 1 chr5B.!!$F2 1079
22 TraesCS5A01G070200 chr7A 731435145 731437754 2609 False 3448.0 3448 90.785 1642 4230 1 chr7A.!!$F3 2588
23 TraesCS5A01G070200 chr7A 658704123 658706221 2098 True 2728.0 2728 90.255 1647 3761 1 chr7A.!!$R2 2114
24 TraesCS5A01G070200 chr1A 20823870 20826471 2601 True 3443.0 3443 90.788 1647 4230 1 chr1A.!!$R1 2583
25 TraesCS5A01G070200 chr1A 34337446 34339560 2114 False 2726.0 2726 90.184 1647 3761 1 chr1A.!!$F1 2114
26 TraesCS5A01G070200 chr2B 629731111 629733649 2538 True 1779.0 2435 92.024 1647 4230 2 chr2B.!!$R1 2583
27 TraesCS5A01G070200 chr2D 36876218 36877806 1588 True 2285.0 2285 92.472 2608 4230 1 chr2D.!!$R1 1622
28 TraesCS5A01G070200 chr4B 187439132 187440662 1530 False 1786.0 1786 88.051 1647 3172 1 chr4B.!!$F1 1525

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
163 164 0.029433 GAGCGATTTCGGGCCAATTC 59.971 55.0 4.39 2.82 40.23 2.17 F
267 268 0.107410 TTCAGTGTCCAGCCAAACGT 60.107 50.0 0.00 0.00 0.00 3.99 F
1387 1397 0.238553 GCCGCACTTCTGTTTTCTCC 59.761 55.0 0.00 0.00 0.00 3.71 F
2047 3185 0.865769 AACAACAACGAGACATCCGC 59.134 50.0 0.00 0.00 0.00 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1387 1397 0.248012 TGGTGGCAGTGGTGTATACG 59.752 55.000 0.00 0.00 0.00 3.06 R
1934 3031 1.005450 GGGAGAGGAGTGAGTGAGAGT 59.995 57.143 0.00 0.00 0.00 3.24 R
2682 3869 0.331278 CCAAGGGGCATCTACCAACA 59.669 55.000 0.00 0.00 0.00 3.33 R
3507 4824 0.331616 GGTAGGGGATGCAACCACTT 59.668 55.000 24.24 7.73 41.39 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 4.326766 CCGCCTGTTGCCGTTGTG 62.327 66.667 0.00 0.00 36.24 3.33
37 38 4.326766 CGCCTGTTGCCGTTGTGG 62.327 66.667 0.00 0.00 42.50 4.17
38 39 3.216292 GCCTGTTGCCGTTGTGGT 61.216 61.111 0.00 0.00 41.21 4.16
39 40 3.030652 CCTGTTGCCGTTGTGGTC 58.969 61.111 0.00 0.00 41.21 4.02
40 41 2.631428 CTGTTGCCGTTGTGGTCG 59.369 61.111 0.00 0.00 41.21 4.79
41 42 3.521308 CTGTTGCCGTTGTGGTCGC 62.521 63.158 0.00 0.00 41.21 5.19
42 43 4.322385 GTTGCCGTTGTGGTCGCC 62.322 66.667 0.00 0.00 41.21 5.54
58 59 4.609018 CCGCCGCCATGACCTAGG 62.609 72.222 7.41 7.41 0.00 3.02
59 60 3.849951 CGCCGCCATGACCTAGGT 61.850 66.667 16.26 16.26 0.00 3.08
60 61 2.109181 GCCGCCATGACCTAGGTC 59.891 66.667 31.61 31.61 44.77 3.85
68 69 2.409651 GACCTAGGTCAGCGCTCG 59.590 66.667 32.91 3.29 44.02 5.03
69 70 2.045242 ACCTAGGTCAGCGCTCGA 60.045 61.111 7.13 6.15 0.00 4.04
70 71 2.054140 GACCTAGGTCAGCGCTCGAG 62.054 65.000 32.91 8.45 44.02 4.04
71 72 2.115911 CCTAGGTCAGCGCTCGAGT 61.116 63.158 7.13 2.10 0.00 4.18
72 73 1.658686 CCTAGGTCAGCGCTCGAGTT 61.659 60.000 7.13 2.87 0.00 3.01
73 74 0.248296 CTAGGTCAGCGCTCGAGTTC 60.248 60.000 7.13 6.13 0.00 3.01
74 75 1.978712 TAGGTCAGCGCTCGAGTTCG 61.979 60.000 7.13 11.16 41.45 3.95
80 81 4.856607 CGCTCGAGTTCGCCCCTC 62.857 72.222 15.13 0.00 39.60 4.30
81 82 4.516195 GCTCGAGTTCGCCCCTCC 62.516 72.222 15.13 0.00 39.60 4.30
82 83 2.756283 CTCGAGTTCGCCCCTCCT 60.756 66.667 3.62 0.00 39.60 3.69
83 84 3.068691 TCGAGTTCGCCCCTCCTG 61.069 66.667 0.00 0.00 39.60 3.86
84 85 3.382832 CGAGTTCGCCCCTCCTGT 61.383 66.667 0.00 0.00 0.00 4.00
85 86 2.943978 CGAGTTCGCCCCTCCTGTT 61.944 63.158 0.00 0.00 0.00 3.16
86 87 1.079057 GAGTTCGCCCCTCCTGTTC 60.079 63.158 0.00 0.00 0.00 3.18
87 88 2.046217 GTTCGCCCCTCCTGTTCC 60.046 66.667 0.00 0.00 0.00 3.62
88 89 3.327404 TTCGCCCCTCCTGTTCCC 61.327 66.667 0.00 0.00 0.00 3.97
91 92 2.941583 GCCCCTCCTGTTCCCCTT 60.942 66.667 0.00 0.00 0.00 3.95
92 93 2.985116 GCCCCTCCTGTTCCCCTTC 61.985 68.421 0.00 0.00 0.00 3.46
93 94 2.670148 CCCCTCCTGTTCCCCTTCG 61.670 68.421 0.00 0.00 0.00 3.79
94 95 2.269241 CCTCCTGTTCCCCTTCGC 59.731 66.667 0.00 0.00 0.00 4.70
95 96 2.294078 CCTCCTGTTCCCCTTCGCT 61.294 63.158 0.00 0.00 0.00 4.93
96 97 1.078848 CTCCTGTTCCCCTTCGCTG 60.079 63.158 0.00 0.00 0.00 5.18
97 98 2.747855 CCTGTTCCCCTTCGCTGC 60.748 66.667 0.00 0.00 0.00 5.25
98 99 2.747855 CTGTTCCCCTTCGCTGCC 60.748 66.667 0.00 0.00 0.00 4.85
99 100 3.249189 TGTTCCCCTTCGCTGCCT 61.249 61.111 0.00 0.00 0.00 4.75
100 101 2.034221 GTTCCCCTTCGCTGCCTT 59.966 61.111 0.00 0.00 0.00 4.35
101 102 2.041115 GTTCCCCTTCGCTGCCTTC 61.041 63.158 0.00 0.00 0.00 3.46
102 103 2.224159 TTCCCCTTCGCTGCCTTCT 61.224 57.895 0.00 0.00 0.00 2.85
103 104 2.437359 CCCCTTCGCTGCCTTCTG 60.437 66.667 0.00 0.00 0.00 3.02
104 105 2.348998 CCCTTCGCTGCCTTCTGT 59.651 61.111 0.00 0.00 0.00 3.41
105 106 1.302832 CCCTTCGCTGCCTTCTGTT 60.303 57.895 0.00 0.00 0.00 3.16
106 107 0.890996 CCCTTCGCTGCCTTCTGTTT 60.891 55.000 0.00 0.00 0.00 2.83
107 108 0.519077 CCTTCGCTGCCTTCTGTTTC 59.481 55.000 0.00 0.00 0.00 2.78
108 109 1.517242 CTTCGCTGCCTTCTGTTTCT 58.483 50.000 0.00 0.00 0.00 2.52
109 110 1.196354 CTTCGCTGCCTTCTGTTTCTG 59.804 52.381 0.00 0.00 0.00 3.02
110 111 0.106708 TCGCTGCCTTCTGTTTCTGT 59.893 50.000 0.00 0.00 0.00 3.41
111 112 0.947244 CGCTGCCTTCTGTTTCTGTT 59.053 50.000 0.00 0.00 0.00 3.16
112 113 1.334869 CGCTGCCTTCTGTTTCTGTTT 59.665 47.619 0.00 0.00 0.00 2.83
113 114 2.603173 CGCTGCCTTCTGTTTCTGTTTC 60.603 50.000 0.00 0.00 0.00 2.78
114 115 2.603173 GCTGCCTTCTGTTTCTGTTTCG 60.603 50.000 0.00 0.00 0.00 3.46
115 116 2.614057 CTGCCTTCTGTTTCTGTTTCGT 59.386 45.455 0.00 0.00 0.00 3.85
116 117 2.354510 TGCCTTCTGTTTCTGTTTCGTG 59.645 45.455 0.00 0.00 0.00 4.35
117 118 2.287009 GCCTTCTGTTTCTGTTTCGTGG 60.287 50.000 0.00 0.00 0.00 4.94
118 119 2.290641 CCTTCTGTTTCTGTTTCGTGGG 59.709 50.000 0.00 0.00 0.00 4.61
119 120 1.305201 TCTGTTTCTGTTTCGTGGGC 58.695 50.000 0.00 0.00 0.00 5.36
120 121 1.134220 TCTGTTTCTGTTTCGTGGGCT 60.134 47.619 0.00 0.00 0.00 5.19
121 122 1.002468 CTGTTTCTGTTTCGTGGGCTG 60.002 52.381 0.00 0.00 0.00 4.85
122 123 1.305201 GTTTCTGTTTCGTGGGCTGA 58.695 50.000 0.00 0.00 0.00 4.26
123 124 1.673920 GTTTCTGTTTCGTGGGCTGAA 59.326 47.619 0.00 0.00 0.00 3.02
124 125 1.593196 TTCTGTTTCGTGGGCTGAAG 58.407 50.000 0.00 0.00 0.00 3.02
125 126 0.884704 TCTGTTTCGTGGGCTGAAGC 60.885 55.000 0.00 0.00 41.14 3.86
126 127 2.175184 CTGTTTCGTGGGCTGAAGCG 62.175 60.000 0.00 0.00 43.26 4.68
127 128 2.668212 TTTCGTGGGCTGAAGCGG 60.668 61.111 0.00 0.00 43.26 5.52
128 129 3.469863 TTTCGTGGGCTGAAGCGGT 62.470 57.895 0.00 0.00 43.26 5.68
129 130 2.102109 TTTCGTGGGCTGAAGCGGTA 62.102 55.000 0.00 0.00 43.26 4.02
130 131 2.775032 TTCGTGGGCTGAAGCGGTAC 62.775 60.000 0.00 0.00 43.26 3.34
131 132 2.436115 GTGGGCTGAAGCGGTACC 60.436 66.667 0.16 0.16 43.26 3.34
132 133 2.606519 TGGGCTGAAGCGGTACCT 60.607 61.111 10.90 0.00 43.26 3.08
133 134 2.221299 TGGGCTGAAGCGGTACCTT 61.221 57.895 10.90 0.00 43.26 3.50
134 135 1.002502 GGGCTGAAGCGGTACCTTT 60.003 57.895 10.90 4.19 43.26 3.11
135 136 0.608308 GGGCTGAAGCGGTACCTTTT 60.608 55.000 10.90 3.79 43.26 2.27
136 137 0.521735 GGCTGAAGCGGTACCTTTTG 59.478 55.000 10.90 0.00 43.26 2.44
137 138 0.109735 GCTGAAGCGGTACCTTTTGC 60.110 55.000 10.90 5.83 0.00 3.68
138 139 0.165944 CTGAAGCGGTACCTTTTGCG 59.834 55.000 10.90 0.00 0.00 4.85
139 140 1.231958 TGAAGCGGTACCTTTTGCGG 61.232 55.000 10.90 0.00 0.00 5.69
140 141 1.918868 GAAGCGGTACCTTTTGCGGG 61.919 60.000 10.90 0.00 0.00 6.13
141 142 2.358984 GCGGTACCTTTTGCGGGA 60.359 61.111 10.90 0.00 0.00 5.14
142 143 2.396157 GCGGTACCTTTTGCGGGAG 61.396 63.158 10.90 0.00 0.00 4.30
143 144 1.294138 CGGTACCTTTTGCGGGAGA 59.706 57.895 10.90 0.00 0.00 3.71
144 145 0.739813 CGGTACCTTTTGCGGGAGAG 60.740 60.000 10.90 0.00 0.00 3.20
145 146 0.611714 GGTACCTTTTGCGGGAGAGA 59.388 55.000 4.06 0.00 0.00 3.10
146 147 1.405661 GGTACCTTTTGCGGGAGAGAG 60.406 57.143 4.06 0.00 0.00 3.20
147 148 0.249398 TACCTTTTGCGGGAGAGAGC 59.751 55.000 0.00 0.00 0.00 4.09
148 149 2.103042 CCTTTTGCGGGAGAGAGCG 61.103 63.158 0.00 0.00 35.87 5.03
149 150 1.079819 CTTTTGCGGGAGAGAGCGA 60.080 57.895 0.00 0.00 35.87 4.93
150 151 0.460987 CTTTTGCGGGAGAGAGCGAT 60.461 55.000 0.00 0.00 35.87 4.58
151 152 0.036388 TTTTGCGGGAGAGAGCGATT 60.036 50.000 0.00 0.00 35.87 3.34
152 153 0.036388 TTTGCGGGAGAGAGCGATTT 60.036 50.000 0.00 0.00 35.87 2.17
153 154 0.460284 TTGCGGGAGAGAGCGATTTC 60.460 55.000 0.00 0.00 35.87 2.17
154 155 1.946650 GCGGGAGAGAGCGATTTCG 60.947 63.158 0.00 0.00 43.27 3.46
155 156 1.299468 CGGGAGAGAGCGATTTCGG 60.299 63.158 1.75 0.00 40.23 4.30
156 157 1.068250 GGGAGAGAGCGATTTCGGG 59.932 63.158 1.75 0.00 40.23 5.14
157 158 1.592939 GGAGAGAGCGATTTCGGGC 60.593 63.158 1.75 0.00 40.23 6.13
158 159 1.592939 GAGAGAGCGATTTCGGGCC 60.593 63.158 0.00 0.00 40.23 5.80
159 160 2.186903 GAGAGCGATTTCGGGCCA 59.813 61.111 4.39 0.00 40.23 5.36
160 161 1.449601 GAGAGCGATTTCGGGCCAA 60.450 57.895 4.39 0.00 40.23 4.52
161 162 0.815615 GAGAGCGATTTCGGGCCAAT 60.816 55.000 4.39 0.00 40.23 3.16
162 163 0.394352 AGAGCGATTTCGGGCCAATT 60.394 50.000 4.39 0.00 40.23 2.32
163 164 0.029433 GAGCGATTTCGGGCCAATTC 59.971 55.000 4.39 2.82 40.23 2.17
164 165 1.298339 GCGATTTCGGGCCAATTCG 60.298 57.895 19.37 19.37 40.23 3.34
165 166 1.355210 CGATTTCGGGCCAATTCGG 59.645 57.895 4.39 0.00 35.37 4.30
166 167 1.092921 CGATTTCGGGCCAATTCGGA 61.093 55.000 4.39 0.00 33.92 4.55
167 168 0.663153 GATTTCGGGCCAATTCGGAG 59.337 55.000 4.39 0.00 36.56 4.63
168 169 1.384222 ATTTCGGGCCAATTCGGAGC 61.384 55.000 4.39 0.00 36.56 4.70
169 170 4.830765 TCGGGCCAATTCGGAGCG 62.831 66.667 4.39 0.00 36.56 5.03
173 174 4.179579 GCCAATTCGGAGCGCCAC 62.180 66.667 7.44 0.00 36.56 5.01
174 175 3.508840 CCAATTCGGAGCGCCACC 61.509 66.667 7.44 7.58 36.56 4.61
175 176 3.508840 CAATTCGGAGCGCCACCC 61.509 66.667 7.44 1.73 0.00 4.61
176 177 4.796495 AATTCGGAGCGCCACCCC 62.796 66.667 7.44 0.00 0.00 4.95
185 186 4.807039 CGCCACCCCTCCGTAACG 62.807 72.222 0.00 0.00 0.00 3.18
186 187 3.698820 GCCACCCCTCCGTAACGT 61.699 66.667 0.00 0.00 0.00 3.99
187 188 2.263540 CCACCCCTCCGTAACGTG 59.736 66.667 0.00 0.00 0.00 4.49
188 189 2.263540 CACCCCTCCGTAACGTGG 59.736 66.667 0.00 0.00 0.00 4.94
189 190 2.999063 ACCCCTCCGTAACGTGGG 60.999 66.667 3.43 3.43 42.23 4.61
190 191 2.681064 CCCCTCCGTAACGTGGGA 60.681 66.667 7.93 5.61 39.71 4.37
193 194 2.890371 CTCCGTAACGTGGGAGGG 59.110 66.667 18.19 9.42 44.94 4.30
194 195 1.679977 CTCCGTAACGTGGGAGGGA 60.680 63.158 18.19 12.52 44.94 4.20
195 196 1.664321 CTCCGTAACGTGGGAGGGAG 61.664 65.000 18.19 16.83 44.94 4.30
196 197 1.679977 CCGTAACGTGGGAGGGAGA 60.680 63.158 0.00 0.00 0.00 3.71
197 198 1.041447 CCGTAACGTGGGAGGGAGAT 61.041 60.000 0.00 0.00 0.00 2.75
198 199 0.822164 CGTAACGTGGGAGGGAGATT 59.178 55.000 0.00 0.00 0.00 2.40
199 200 1.206371 CGTAACGTGGGAGGGAGATTT 59.794 52.381 0.00 0.00 0.00 2.17
200 201 2.354403 CGTAACGTGGGAGGGAGATTTT 60.354 50.000 0.00 0.00 0.00 1.82
201 202 2.491675 AACGTGGGAGGGAGATTTTC 57.508 50.000 0.00 0.00 0.00 2.29
202 203 1.358152 ACGTGGGAGGGAGATTTTCA 58.642 50.000 0.00 0.00 0.00 2.69
203 204 1.003233 ACGTGGGAGGGAGATTTTCAC 59.997 52.381 0.00 0.00 0.00 3.18
204 205 1.739067 GTGGGAGGGAGATTTTCACG 58.261 55.000 0.00 0.00 33.09 4.35
205 206 0.618458 TGGGAGGGAGATTTTCACGG 59.382 55.000 0.00 0.00 33.09 4.94
206 207 0.909623 GGGAGGGAGATTTTCACGGA 59.090 55.000 0.00 0.00 33.09 4.69
207 208 1.280998 GGGAGGGAGATTTTCACGGAA 59.719 52.381 0.00 0.00 33.09 4.30
208 209 2.633488 GGAGGGAGATTTTCACGGAAG 58.367 52.381 0.00 0.00 33.09 3.46
209 210 2.010497 GAGGGAGATTTTCACGGAAGC 58.990 52.381 0.00 0.00 33.09 3.86
210 211 0.727398 GGGAGATTTTCACGGAAGCG 59.273 55.000 0.00 0.00 0.00 4.68
211 212 1.674817 GGGAGATTTTCACGGAAGCGA 60.675 52.381 0.00 0.00 0.00 4.93
212 213 2.073816 GGAGATTTTCACGGAAGCGAA 58.926 47.619 0.00 0.00 0.00 4.70
213 214 2.482721 GGAGATTTTCACGGAAGCGAAA 59.517 45.455 0.00 0.00 40.06 3.46
216 217 2.093972 TTTTCACGGAAGCGAAAACG 57.906 45.000 0.00 0.00 44.40 3.60
217 218 0.305313 TTTCACGGAAGCGAAAACGG 59.695 50.000 0.00 0.00 38.99 4.44
218 219 1.500512 TTCACGGAAGCGAAAACGGG 61.501 55.000 0.00 0.00 0.00 5.28
219 220 3.351416 ACGGAAGCGAAAACGGGC 61.351 61.111 0.00 0.00 0.00 6.13
220 221 3.047877 CGGAAGCGAAAACGGGCT 61.048 61.111 0.00 0.00 42.33 5.19
223 224 4.150994 AAGCGAAAACGGGCTTGA 57.849 50.000 0.00 0.00 46.96 3.02
224 225 2.410466 AAGCGAAAACGGGCTTGAA 58.590 47.368 0.00 0.00 46.96 2.69
225 226 0.958822 AAGCGAAAACGGGCTTGAAT 59.041 45.000 0.00 0.00 46.96 2.57
226 227 0.958822 AGCGAAAACGGGCTTGAATT 59.041 45.000 0.00 0.00 35.61 2.17
227 228 1.059942 GCGAAAACGGGCTTGAATTG 58.940 50.000 0.00 0.00 0.00 2.32
228 229 1.059942 CGAAAACGGGCTTGAATTGC 58.940 50.000 0.00 0.00 0.00 3.56
239 240 5.694231 GGCTTGAATTGCCTTTTCATTTT 57.306 34.783 0.00 0.00 46.38 1.82
240 241 5.692814 GGCTTGAATTGCCTTTTCATTTTC 58.307 37.500 0.00 0.00 46.38 2.29
241 242 5.239087 GGCTTGAATTGCCTTTTCATTTTCA 59.761 36.000 0.00 0.00 46.38 2.69
242 243 6.238703 GGCTTGAATTGCCTTTTCATTTTCAA 60.239 34.615 0.00 0.00 46.38 2.69
243 244 7.364970 GCTTGAATTGCCTTTTCATTTTCAAT 58.635 30.769 0.00 0.00 33.37 2.57
244 245 8.505625 GCTTGAATTGCCTTTTCATTTTCAATA 58.494 29.630 0.00 0.00 33.37 1.90
245 246 9.815936 CTTGAATTGCCTTTTCATTTTCAATAC 57.184 29.630 0.00 0.00 33.37 1.89
246 247 8.899427 TGAATTGCCTTTTCATTTTCAATACA 57.101 26.923 0.00 0.00 0.00 2.29
247 248 9.334947 TGAATTGCCTTTTCATTTTCAATACAA 57.665 25.926 0.00 0.00 0.00 2.41
251 252 8.899427 TGCCTTTTCATTTTCAATACAATTCA 57.101 26.923 0.00 0.00 0.00 2.57
252 253 8.991026 TGCCTTTTCATTTTCAATACAATTCAG 58.009 29.630 0.00 0.00 0.00 3.02
253 254 8.992073 GCCTTTTCATTTTCAATACAATTCAGT 58.008 29.630 0.00 0.00 0.00 3.41
257 258 9.474920 TTTCATTTTCAATACAATTCAGTGTCC 57.525 29.630 0.00 0.00 32.75 4.02
258 259 8.175925 TCATTTTCAATACAATTCAGTGTCCA 57.824 30.769 0.00 0.00 32.75 4.02
259 260 8.298854 TCATTTTCAATACAATTCAGTGTCCAG 58.701 33.333 0.00 0.00 32.75 3.86
260 261 5.627499 TTCAATACAATTCAGTGTCCAGC 57.373 39.130 0.00 0.00 32.75 4.85
261 262 4.009675 TCAATACAATTCAGTGTCCAGCC 58.990 43.478 0.00 0.00 32.75 4.85
262 263 3.719268 ATACAATTCAGTGTCCAGCCA 57.281 42.857 0.00 0.00 32.75 4.75
263 264 2.363306 ACAATTCAGTGTCCAGCCAA 57.637 45.000 0.00 0.00 0.00 4.52
264 265 2.665165 ACAATTCAGTGTCCAGCCAAA 58.335 42.857 0.00 0.00 0.00 3.28
265 266 2.362077 ACAATTCAGTGTCCAGCCAAAC 59.638 45.455 0.00 0.00 0.00 2.93
266 267 1.238439 ATTCAGTGTCCAGCCAAACG 58.762 50.000 0.00 0.00 0.00 3.60
267 268 0.107410 TTCAGTGTCCAGCCAAACGT 60.107 50.000 0.00 0.00 0.00 3.99
268 269 0.531974 TCAGTGTCCAGCCAAACGTC 60.532 55.000 0.00 0.00 0.00 4.34
269 270 1.227853 AGTGTCCAGCCAAACGTCC 60.228 57.895 0.00 0.00 0.00 4.79
270 271 2.280524 TGTCCAGCCAAACGTCCG 60.281 61.111 0.00 0.00 0.00 4.79
271 272 2.280592 GTCCAGCCAAACGTCCGT 60.281 61.111 0.00 0.00 0.00 4.69
272 273 1.005867 GTCCAGCCAAACGTCCGTA 60.006 57.895 0.00 0.00 0.00 4.02
273 274 0.390735 GTCCAGCCAAACGTCCGTAT 60.391 55.000 0.00 0.00 0.00 3.06
274 275 0.322322 TCCAGCCAAACGTCCGTATT 59.678 50.000 0.00 0.00 0.00 1.89
275 276 0.446222 CCAGCCAAACGTCCGTATTG 59.554 55.000 0.00 0.97 0.00 1.90
276 277 1.434555 CAGCCAAACGTCCGTATTGA 58.565 50.000 12.82 0.00 0.00 2.57
277 278 1.127951 CAGCCAAACGTCCGTATTGAC 59.872 52.381 12.82 5.28 0.00 3.18
278 279 0.445043 GCCAAACGTCCGTATTGACC 59.555 55.000 12.82 4.39 31.35 4.02
279 280 1.081094 CCAAACGTCCGTATTGACCC 58.919 55.000 12.82 0.00 31.35 4.46
280 281 1.608542 CCAAACGTCCGTATTGACCCA 60.609 52.381 12.82 0.00 31.35 4.51
281 282 1.730064 CAAACGTCCGTATTGACCCAG 59.270 52.381 0.00 0.00 31.35 4.45
282 283 1.259609 AACGTCCGTATTGACCCAGA 58.740 50.000 0.00 0.00 31.35 3.86
283 284 1.481871 ACGTCCGTATTGACCCAGAT 58.518 50.000 0.00 0.00 31.35 2.90
284 285 1.136305 ACGTCCGTATTGACCCAGATG 59.864 52.381 0.00 0.00 31.35 2.90
285 286 1.407618 CGTCCGTATTGACCCAGATGA 59.592 52.381 0.00 0.00 31.35 2.92
286 287 2.035961 CGTCCGTATTGACCCAGATGAT 59.964 50.000 0.00 0.00 31.35 2.45
287 288 3.492656 CGTCCGTATTGACCCAGATGATT 60.493 47.826 0.00 0.00 31.35 2.57
288 289 4.261867 CGTCCGTATTGACCCAGATGATTA 60.262 45.833 0.00 0.00 31.35 1.75
289 290 4.989168 GTCCGTATTGACCCAGATGATTAC 59.011 45.833 0.00 0.00 0.00 1.89
290 291 3.987868 CCGTATTGACCCAGATGATTACG 59.012 47.826 0.00 0.00 0.00 3.18
291 292 4.261867 CCGTATTGACCCAGATGATTACGA 60.262 45.833 0.00 0.00 0.00 3.43
292 293 5.286438 CGTATTGACCCAGATGATTACGAA 58.714 41.667 0.00 0.00 0.00 3.85
293 294 5.751509 CGTATTGACCCAGATGATTACGAAA 59.248 40.000 0.00 0.00 0.00 3.46
294 295 6.423905 CGTATTGACCCAGATGATTACGAAAT 59.576 38.462 0.00 0.00 0.00 2.17
295 296 6.867662 ATTGACCCAGATGATTACGAAATC 57.132 37.500 0.00 0.00 41.69 2.17
296 297 4.703897 TGACCCAGATGATTACGAAATCC 58.296 43.478 0.00 0.00 40.78 3.01
297 298 4.163268 TGACCCAGATGATTACGAAATCCA 59.837 41.667 0.00 0.00 40.78 3.41
298 299 5.163205 TGACCCAGATGATTACGAAATCCAT 60.163 40.000 0.00 0.00 40.78 3.41
299 300 5.694995 ACCCAGATGATTACGAAATCCATT 58.305 37.500 0.00 0.00 40.78 3.16
300 301 6.129179 ACCCAGATGATTACGAAATCCATTT 58.871 36.000 0.00 0.00 40.78 2.32
301 302 6.263168 ACCCAGATGATTACGAAATCCATTTC 59.737 38.462 2.39 2.39 40.78 2.17
302 303 6.294176 CCCAGATGATTACGAAATCCATTTCC 60.294 42.308 6.48 0.00 42.34 3.13
303 304 6.488006 CCAGATGATTACGAAATCCATTTCCT 59.512 38.462 6.48 0.00 42.34 3.36
304 305 7.358066 CAGATGATTACGAAATCCATTTCCTG 58.642 38.462 6.48 2.66 42.34 3.86
306 307 4.887071 TGATTACGAAATCCATTTCCTGGG 59.113 41.667 6.48 0.00 45.98 4.45
307 308 1.474330 ACGAAATCCATTTCCTGGGC 58.526 50.000 6.48 0.00 45.98 5.36
308 309 1.005924 ACGAAATCCATTTCCTGGGCT 59.994 47.619 6.48 0.00 45.98 5.19
309 310 1.678101 CGAAATCCATTTCCTGGGCTC 59.322 52.381 6.48 0.00 45.98 4.70
310 311 2.034878 GAAATCCATTTCCTGGGCTCC 58.965 52.381 1.11 0.00 45.98 4.70
311 312 1.009997 AATCCATTTCCTGGGCTCCA 58.990 50.000 0.00 0.00 45.98 3.86
312 313 1.009997 ATCCATTTCCTGGGCTCCAA 58.990 50.000 0.00 0.00 45.98 3.53
313 314 1.009997 TCCATTTCCTGGGCTCCAAT 58.990 50.000 0.00 0.00 45.98 3.16
314 315 1.362237 TCCATTTCCTGGGCTCCAATT 59.638 47.619 0.00 0.00 45.98 2.32
315 316 1.483415 CCATTTCCTGGGCTCCAATTG 59.517 52.381 0.00 0.00 41.82 2.32
316 317 2.459644 CATTTCCTGGGCTCCAATTGA 58.540 47.619 7.12 0.00 30.80 2.57
317 318 2.220653 TTTCCTGGGCTCCAATTGAG 57.779 50.000 7.12 3.86 44.47 3.02
318 319 1.371467 TTCCTGGGCTCCAATTGAGA 58.629 50.000 7.12 1.70 44.42 3.27
327 328 4.102035 GCTCCAATTGAGACATCCAAAC 57.898 45.455 7.12 0.00 44.42 2.93
328 329 3.426695 GCTCCAATTGAGACATCCAAACG 60.427 47.826 7.12 0.00 44.42 3.60
329 330 2.487762 TCCAATTGAGACATCCAAACGC 59.512 45.455 7.12 0.00 0.00 4.84
330 331 2.228582 CCAATTGAGACATCCAAACGCA 59.771 45.455 7.12 0.00 0.00 5.24
331 332 3.495193 CAATTGAGACATCCAAACGCAG 58.505 45.455 0.00 0.00 0.00 5.18
337 338 2.806244 AGACATCCAAACGCAGTGTAAC 59.194 45.455 0.00 0.00 45.00 2.50
385 386 9.620259 TTTGTATATGACCATTGTATGCTGTAA 57.380 29.630 0.00 0.00 0.00 2.41
475 476 8.306680 TGTTCTCATTTAGTTTCTTTCCTACG 57.693 34.615 0.00 0.00 0.00 3.51
526 527 6.625873 AGCTTTTGTCTTTTCCACTCTTAG 57.374 37.500 0.00 0.00 0.00 2.18
660 661 5.345741 GCGCCATGCTAAATAATTACCATTG 59.654 40.000 0.00 0.00 41.73 2.82
1035 1036 2.603560 GTGCCTTCGTAGAAGTATGTGC 59.396 50.000 8.70 5.36 45.90 4.57
1179 1180 5.130477 CCTGGTAACTTCTCTATGGCCTTTA 59.870 44.000 3.32 0.00 37.61 1.85
1198 1199 5.710567 CCTTTAGCAAATTATAGGCCCTACC 59.289 44.000 0.00 0.00 39.61 3.18
1207 1208 1.268992 TAGGCCCTACCGTTGCACAT 61.269 55.000 0.00 0.00 46.52 3.21
1387 1397 0.238553 GCCGCACTTCTGTTTTCTCC 59.761 55.000 0.00 0.00 0.00 3.71
1504 2553 3.004106 CCAAAGAAGGTGCTCAACTCTTG 59.996 47.826 0.00 0.00 0.00 3.02
1588 2637 3.721021 AGCCCAGAGTTTAGCTAGGTTA 58.279 45.455 0.00 0.00 32.73 2.85
1606 2655 8.233190 GCTAGGTTATGCTTTGATATTGATCAC 58.767 37.037 0.00 0.00 41.92 3.06
1791 2841 3.976793 TCGTCGATTTAGCCGTTCTAT 57.023 42.857 0.00 0.00 0.00 1.98
1985 3109 4.656112 TCTTCTTCCTCTGTTTCTCACCTT 59.344 41.667 0.00 0.00 0.00 3.50
2047 3185 0.865769 AACAACAACGAGACATCCGC 59.134 50.000 0.00 0.00 0.00 5.54
2079 3223 4.905269 TGACGAGTACATGAATGAGTACG 58.095 43.478 0.00 0.00 43.98 3.67
2224 3378 6.735229 AGGTGTTGTGGATGATATATATGGGA 59.265 38.462 0.00 0.00 0.00 4.37
2347 3501 2.364970 CAGGTTTGTGGCATTTGAAGGA 59.635 45.455 0.00 0.00 0.00 3.36
2348 3502 3.007182 CAGGTTTGTGGCATTTGAAGGAT 59.993 43.478 0.00 0.00 0.00 3.24
2376 3530 5.429762 ACACTGGAAGGAGATTCATTGGATA 59.570 40.000 0.00 0.00 39.91 2.59
2406 3566 4.890088 ACGGTAAGAGCAAACAATAGTGA 58.110 39.130 0.00 0.00 0.00 3.41
2410 3570 6.455646 CGGTAAGAGCAAACAATAGTGATGTC 60.456 42.308 0.00 0.00 0.00 3.06
2680 3867 2.502130 TGGTGTGAACTGTGGTGTTCTA 59.498 45.455 8.52 0.00 44.63 2.10
2682 3869 3.431766 GGTGTGAACTGTGGTGTTCTAGT 60.432 47.826 8.52 0.00 44.63 2.57
2685 3872 4.189231 GTGAACTGTGGTGTTCTAGTGTT 58.811 43.478 8.52 0.00 44.63 3.32
2830 4020 1.582389 AGGAGCTGGATTCTCTTGCT 58.418 50.000 0.00 0.00 36.63 3.91
2939 4138 4.427312 CCAGGCAATCAATGAACTTAAGC 58.573 43.478 1.29 0.00 0.00 3.09
3046 4246 5.639931 CCTGCAGAGTCAAGATGATATCATG 59.360 44.000 22.86 10.49 36.57 3.07
3204 4413 3.623906 AGTTGTCATGGAGGAGTGATG 57.376 47.619 0.00 0.00 0.00 3.07
3364 4675 5.938125 GCCTAAGAACTGTCTATGGTTTCAA 59.062 40.000 0.00 0.00 32.16 2.69
3520 4837 6.524101 TTTTTATCCTAAGTGGTTGCATCC 57.476 37.500 6.88 6.88 37.07 3.51
3571 4905 9.120538 AGTTAGTTGTAACATTTCACAGATTGT 57.879 29.630 0.00 0.00 41.06 2.71
3643 4977 8.258007 GCACCATAGGTAGCATTACATAGATAA 58.742 37.037 0.00 0.00 32.11 1.75
3669 5043 7.118390 ACACAATACTTGCTAACACTGAAGATC 59.882 37.037 0.00 0.00 0.00 2.75
3702 5076 4.730657 ACGAAACTGACATAGGTAGTTCG 58.269 43.478 10.75 10.75 33.82 3.95
3839 5219 0.856982 TCAGTTGGGTGGGATTTGGT 59.143 50.000 0.00 0.00 0.00 3.67
3841 5221 2.046292 CAGTTGGGTGGGATTTGGTTT 58.954 47.619 0.00 0.00 0.00 3.27
3853 5233 2.838637 TTTGGTTTCACCTCCACCTT 57.161 45.000 0.00 0.00 39.58 3.50
3901 5287 2.764128 GATGGGAGGAGGACGGCA 60.764 66.667 0.00 0.00 0.00 5.69
3934 5320 1.807226 CTGGGTGTGCGACGATCTA 59.193 57.895 0.00 0.00 0.00 1.98
4084 5476 4.210331 GCCCATAGAAGAATGTTGATGGT 58.790 43.478 0.00 0.00 33.42 3.55
4123 5515 0.744414 TTTCCATAGCGCTGCTCCAC 60.744 55.000 22.90 0.00 40.44 4.02
4174 5566 1.339824 CCTCACTTCCTCTGCTGCATT 60.340 52.381 1.31 0.00 0.00 3.56
4179 5571 1.667724 CTTCCTCTGCTGCATTTACCG 59.332 52.381 1.31 0.00 0.00 4.02
4188 5580 2.028130 CTGCATTTACCGGCCCAATAA 58.972 47.619 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.194272 GACCACAACGGCAACAGGC 62.194 63.158 0.00 0.00 39.03 4.85
23 24 2.631428 CGACCACAACGGCAACAG 59.369 61.111 0.00 0.00 39.03 3.16
24 25 3.578272 GCGACCACAACGGCAACA 61.578 61.111 0.00 0.00 39.03 3.33
41 42 4.609018 CCTAGGTCATGGCGGCGG 62.609 72.222 9.78 0.00 0.00 6.13
42 43 3.792053 GACCTAGGTCATGGCGGCG 62.792 68.421 32.91 0.51 44.02 6.46
43 44 2.109181 GACCTAGGTCATGGCGGC 59.891 66.667 32.91 7.12 44.02 6.53
51 52 2.054140 CTCGAGCGCTGACCTAGGTC 62.054 65.000 31.61 31.61 44.77 3.85
52 53 2.045242 TCGAGCGCTGACCTAGGT 60.045 61.111 18.48 16.26 0.00 3.08
53 54 1.658686 AACTCGAGCGCTGACCTAGG 61.659 60.000 18.48 7.41 0.00 3.02
54 55 0.248296 GAACTCGAGCGCTGACCTAG 60.248 60.000 18.48 4.37 0.00 3.02
55 56 1.801332 GAACTCGAGCGCTGACCTA 59.199 57.895 18.48 0.00 0.00 3.08
56 57 2.569134 GAACTCGAGCGCTGACCT 59.431 61.111 18.48 0.03 0.00 3.85
57 58 2.876645 CGAACTCGAGCGCTGACC 60.877 66.667 18.48 0.00 43.02 4.02
63 64 4.856607 GAGGGGCGAACTCGAGCG 62.857 72.222 13.61 10.34 43.02 5.03
64 65 4.516195 GGAGGGGCGAACTCGAGC 62.516 72.222 13.61 0.00 43.02 5.03
65 66 2.756283 AGGAGGGGCGAACTCGAG 60.756 66.667 11.84 11.84 43.02 4.04
66 67 3.068691 CAGGAGGGGCGAACTCGA 61.069 66.667 2.69 0.00 43.02 4.04
67 68 2.837371 GAACAGGAGGGGCGAACTCG 62.837 65.000 0.00 0.00 43.27 4.18
68 69 1.079057 GAACAGGAGGGGCGAACTC 60.079 63.158 0.00 0.00 0.00 3.01
69 70 2.593956 GGAACAGGAGGGGCGAACT 61.594 63.158 0.00 0.00 0.00 3.01
70 71 2.046217 GGAACAGGAGGGGCGAAC 60.046 66.667 0.00 0.00 0.00 3.95
71 72 3.327404 GGGAACAGGAGGGGCGAA 61.327 66.667 0.00 0.00 0.00 4.70
74 75 2.941583 AAGGGGAACAGGAGGGGC 60.942 66.667 0.00 0.00 0.00 5.80
75 76 2.670148 CGAAGGGGAACAGGAGGGG 61.670 68.421 0.00 0.00 0.00 4.79
76 77 2.990479 CGAAGGGGAACAGGAGGG 59.010 66.667 0.00 0.00 0.00 4.30
77 78 2.269241 GCGAAGGGGAACAGGAGG 59.731 66.667 0.00 0.00 0.00 4.30
78 79 1.078848 CAGCGAAGGGGAACAGGAG 60.079 63.158 0.00 0.00 0.00 3.69
79 80 3.068881 CAGCGAAGGGGAACAGGA 58.931 61.111 0.00 0.00 0.00 3.86
80 81 2.747855 GCAGCGAAGGGGAACAGG 60.748 66.667 0.00 0.00 0.00 4.00
81 82 2.747855 GGCAGCGAAGGGGAACAG 60.748 66.667 0.00 0.00 0.00 3.16
82 83 2.748058 GAAGGCAGCGAAGGGGAACA 62.748 60.000 0.00 0.00 0.00 3.18
83 84 2.034221 AAGGCAGCGAAGGGGAAC 59.966 61.111 0.00 0.00 0.00 3.62
84 85 2.224159 AGAAGGCAGCGAAGGGGAA 61.224 57.895 0.00 0.00 0.00 3.97
85 86 2.607750 AGAAGGCAGCGAAGGGGA 60.608 61.111 0.00 0.00 0.00 4.81
86 87 2.437359 CAGAAGGCAGCGAAGGGG 60.437 66.667 0.00 0.00 0.00 4.79
87 88 0.890996 AAACAGAAGGCAGCGAAGGG 60.891 55.000 0.00 0.00 0.00 3.95
88 89 0.519077 GAAACAGAAGGCAGCGAAGG 59.481 55.000 0.00 0.00 0.00 3.46
89 90 1.196354 CAGAAACAGAAGGCAGCGAAG 59.804 52.381 0.00 0.00 0.00 3.79
90 91 1.229428 CAGAAACAGAAGGCAGCGAA 58.771 50.000 0.00 0.00 0.00 4.70
91 92 0.106708 ACAGAAACAGAAGGCAGCGA 59.893 50.000 0.00 0.00 0.00 4.93
92 93 0.947244 AACAGAAACAGAAGGCAGCG 59.053 50.000 0.00 0.00 0.00 5.18
93 94 2.603173 CGAAACAGAAACAGAAGGCAGC 60.603 50.000 0.00 0.00 0.00 5.25
94 95 2.614057 ACGAAACAGAAACAGAAGGCAG 59.386 45.455 0.00 0.00 0.00 4.85
95 96 2.354510 CACGAAACAGAAACAGAAGGCA 59.645 45.455 0.00 0.00 0.00 4.75
96 97 2.287009 CCACGAAACAGAAACAGAAGGC 60.287 50.000 0.00 0.00 0.00 4.35
97 98 2.290641 CCCACGAAACAGAAACAGAAGG 59.709 50.000 0.00 0.00 0.00 3.46
98 99 2.287009 GCCCACGAAACAGAAACAGAAG 60.287 50.000 0.00 0.00 0.00 2.85
99 100 1.673920 GCCCACGAAACAGAAACAGAA 59.326 47.619 0.00 0.00 0.00 3.02
100 101 1.134220 AGCCCACGAAACAGAAACAGA 60.134 47.619 0.00 0.00 0.00 3.41
101 102 1.002468 CAGCCCACGAAACAGAAACAG 60.002 52.381 0.00 0.00 0.00 3.16
102 103 1.021202 CAGCCCACGAAACAGAAACA 58.979 50.000 0.00 0.00 0.00 2.83
103 104 1.305201 TCAGCCCACGAAACAGAAAC 58.695 50.000 0.00 0.00 0.00 2.78
104 105 1.946768 CTTCAGCCCACGAAACAGAAA 59.053 47.619 0.00 0.00 0.00 2.52
105 106 1.593196 CTTCAGCCCACGAAACAGAA 58.407 50.000 0.00 0.00 0.00 3.02
106 107 0.884704 GCTTCAGCCCACGAAACAGA 60.885 55.000 0.00 0.00 34.31 3.41
107 108 1.576421 GCTTCAGCCCACGAAACAG 59.424 57.895 0.00 0.00 34.31 3.16
108 109 2.250939 CGCTTCAGCCCACGAAACA 61.251 57.895 0.00 0.00 37.91 2.83
109 110 2.556287 CGCTTCAGCCCACGAAAC 59.444 61.111 0.00 0.00 37.91 2.78
110 111 2.102109 TACCGCTTCAGCCCACGAAA 62.102 55.000 0.00 0.00 37.91 3.46
111 112 2.575893 TACCGCTTCAGCCCACGAA 61.576 57.895 0.00 0.00 37.91 3.85
112 113 2.992689 TACCGCTTCAGCCCACGA 60.993 61.111 0.00 0.00 37.91 4.35
113 114 2.813908 GTACCGCTTCAGCCCACG 60.814 66.667 0.00 0.00 37.91 4.94
114 115 2.436115 GGTACCGCTTCAGCCCAC 60.436 66.667 0.00 0.00 37.91 4.61
115 116 1.774894 AAAGGTACCGCTTCAGCCCA 61.775 55.000 6.18 0.00 37.91 5.36
116 117 0.608308 AAAAGGTACCGCTTCAGCCC 60.608 55.000 6.18 0.00 37.91 5.19
117 118 0.521735 CAAAAGGTACCGCTTCAGCC 59.478 55.000 6.18 0.00 37.91 4.85
118 119 0.109735 GCAAAAGGTACCGCTTCAGC 60.110 55.000 6.18 8.48 37.78 4.26
119 120 0.165944 CGCAAAAGGTACCGCTTCAG 59.834 55.000 6.18 2.61 0.00 3.02
120 121 1.231958 CCGCAAAAGGTACCGCTTCA 61.232 55.000 6.18 0.00 0.00 3.02
121 122 1.500396 CCGCAAAAGGTACCGCTTC 59.500 57.895 6.18 0.00 0.00 3.86
122 123 1.969589 CCCGCAAAAGGTACCGCTT 60.970 57.895 6.18 0.95 0.00 4.68
123 124 2.359478 CCCGCAAAAGGTACCGCT 60.359 61.111 6.18 0.00 0.00 5.52
124 125 2.358984 TCCCGCAAAAGGTACCGC 60.359 61.111 6.18 2.56 0.00 5.68
125 126 0.739813 CTCTCCCGCAAAAGGTACCG 60.740 60.000 6.18 0.00 0.00 4.02
126 127 0.611714 TCTCTCCCGCAAAAGGTACC 59.388 55.000 2.73 2.73 0.00 3.34
127 128 2.007547 GCTCTCTCCCGCAAAAGGTAC 61.008 57.143 0.00 0.00 0.00 3.34
128 129 0.249398 GCTCTCTCCCGCAAAAGGTA 59.751 55.000 0.00 0.00 0.00 3.08
129 130 1.003233 GCTCTCTCCCGCAAAAGGT 60.003 57.895 0.00 0.00 0.00 3.50
130 131 2.103042 CGCTCTCTCCCGCAAAAGG 61.103 63.158 0.00 0.00 0.00 3.11
131 132 0.460987 ATCGCTCTCTCCCGCAAAAG 60.461 55.000 0.00 0.00 0.00 2.27
132 133 0.036388 AATCGCTCTCTCCCGCAAAA 60.036 50.000 0.00 0.00 0.00 2.44
133 134 0.036388 AAATCGCTCTCTCCCGCAAA 60.036 50.000 0.00 0.00 0.00 3.68
134 135 0.460284 GAAATCGCTCTCTCCCGCAA 60.460 55.000 0.00 0.00 0.00 4.85
135 136 1.141881 GAAATCGCTCTCTCCCGCA 59.858 57.895 0.00 0.00 0.00 5.69
136 137 1.946650 CGAAATCGCTCTCTCCCGC 60.947 63.158 0.00 0.00 0.00 6.13
137 138 1.299468 CCGAAATCGCTCTCTCCCG 60.299 63.158 0.00 0.00 38.18 5.14
138 139 1.068250 CCCGAAATCGCTCTCTCCC 59.932 63.158 0.00 0.00 38.18 4.30
139 140 1.592939 GCCCGAAATCGCTCTCTCC 60.593 63.158 0.00 0.00 38.18 3.71
140 141 1.592939 GGCCCGAAATCGCTCTCTC 60.593 63.158 0.00 0.00 38.18 3.20
141 142 1.899437 TTGGCCCGAAATCGCTCTCT 61.899 55.000 0.00 0.00 38.18 3.10
142 143 0.815615 ATTGGCCCGAAATCGCTCTC 60.816 55.000 0.00 0.00 38.18 3.20
143 144 0.394352 AATTGGCCCGAAATCGCTCT 60.394 50.000 0.00 0.00 38.18 4.09
144 145 0.029433 GAATTGGCCCGAAATCGCTC 59.971 55.000 0.00 0.00 38.18 5.03
145 146 1.714899 CGAATTGGCCCGAAATCGCT 61.715 55.000 0.00 0.00 38.18 4.93
146 147 1.298339 CGAATTGGCCCGAAATCGC 60.298 57.895 0.00 0.00 38.18 4.58
147 148 1.092921 TCCGAATTGGCCCGAAATCG 61.093 55.000 0.00 2.98 37.80 3.34
148 149 0.663153 CTCCGAATTGGCCCGAAATC 59.337 55.000 0.00 0.00 37.80 2.17
149 150 1.384222 GCTCCGAATTGGCCCGAAAT 61.384 55.000 0.00 0.00 37.80 2.17
150 151 2.043980 GCTCCGAATTGGCCCGAAA 61.044 57.895 0.00 0.00 37.80 3.46
151 152 2.437716 GCTCCGAATTGGCCCGAA 60.438 61.111 0.00 0.00 37.80 4.30
152 153 4.830765 CGCTCCGAATTGGCCCGA 62.831 66.667 0.00 0.00 37.80 5.14
156 157 4.179579 GTGGCGCTCCGAATTGGC 62.180 66.667 7.64 0.00 37.80 4.52
157 158 3.508840 GGTGGCGCTCCGAATTGG 61.509 66.667 7.64 0.00 40.09 3.16
158 159 3.508840 GGGTGGCGCTCCGAATTG 61.509 66.667 7.64 0.00 34.14 2.32
159 160 4.796495 GGGGTGGCGCTCCGAATT 62.796 66.667 7.64 0.00 34.14 2.17
168 169 4.807039 CGTTACGGAGGGGTGGCG 62.807 72.222 0.00 0.00 0.00 5.69
169 170 3.698820 ACGTTACGGAGGGGTGGC 61.699 66.667 10.20 0.00 0.00 5.01
170 171 2.263540 CACGTTACGGAGGGGTGG 59.736 66.667 10.20 0.00 0.00 4.61
171 172 2.263540 CCACGTTACGGAGGGGTG 59.736 66.667 10.20 0.00 0.00 4.61
172 173 2.999063 CCCACGTTACGGAGGGGT 60.999 66.667 23.60 0.00 40.74 4.95
173 174 2.681064 TCCCACGTTACGGAGGGG 60.681 66.667 28.07 24.23 43.24 4.79
174 175 2.890371 CTCCCACGTTACGGAGGG 59.110 66.667 24.78 24.78 43.98 4.30
176 177 1.664321 CTCCCTCCCACGTTACGGAG 61.664 65.000 10.20 13.80 44.59 4.63
177 178 1.679977 CTCCCTCCCACGTTACGGA 60.680 63.158 10.20 0.00 0.00 4.69
178 179 1.041447 ATCTCCCTCCCACGTTACGG 61.041 60.000 10.20 0.00 0.00 4.02
179 180 0.822164 AATCTCCCTCCCACGTTACG 59.178 55.000 2.19 2.19 0.00 3.18
180 181 3.268330 GAAAATCTCCCTCCCACGTTAC 58.732 50.000 0.00 0.00 0.00 2.50
181 182 2.907696 TGAAAATCTCCCTCCCACGTTA 59.092 45.455 0.00 0.00 0.00 3.18
182 183 1.702957 TGAAAATCTCCCTCCCACGTT 59.297 47.619 0.00 0.00 0.00 3.99
183 184 1.003233 GTGAAAATCTCCCTCCCACGT 59.997 52.381 0.00 0.00 0.00 4.49
184 185 1.739067 GTGAAAATCTCCCTCCCACG 58.261 55.000 0.00 0.00 0.00 4.94
185 186 1.679032 CCGTGAAAATCTCCCTCCCAC 60.679 57.143 0.00 0.00 0.00 4.61
186 187 0.618458 CCGTGAAAATCTCCCTCCCA 59.382 55.000 0.00 0.00 0.00 4.37
187 188 0.909623 TCCGTGAAAATCTCCCTCCC 59.090 55.000 0.00 0.00 0.00 4.30
188 189 2.633488 CTTCCGTGAAAATCTCCCTCC 58.367 52.381 0.00 0.00 0.00 4.30
189 190 2.010497 GCTTCCGTGAAAATCTCCCTC 58.990 52.381 0.00 0.00 0.00 4.30
190 191 1.676014 CGCTTCCGTGAAAATCTCCCT 60.676 52.381 0.00 0.00 0.00 4.20
191 192 0.727398 CGCTTCCGTGAAAATCTCCC 59.273 55.000 0.00 0.00 0.00 4.30
192 193 1.722011 TCGCTTCCGTGAAAATCTCC 58.278 50.000 0.00 0.00 35.54 3.71
193 194 3.806316 TTTCGCTTCCGTGAAAATCTC 57.194 42.857 0.00 0.00 44.20 2.75
198 199 0.305313 CCGTTTTCGCTTCCGTGAAA 59.695 50.000 0.00 0.00 45.14 2.69
199 200 1.500512 CCCGTTTTCGCTTCCGTGAA 61.501 55.000 0.00 0.00 42.58 3.18
200 201 1.957186 CCCGTTTTCGCTTCCGTGA 60.957 57.895 0.00 0.00 42.58 4.35
201 202 2.554272 CCCGTTTTCGCTTCCGTG 59.446 61.111 0.00 0.00 42.58 4.94
202 203 3.351416 GCCCGTTTTCGCTTCCGT 61.351 61.111 0.00 0.00 42.58 4.69
203 204 2.613506 AAGCCCGTTTTCGCTTCCG 61.614 57.895 0.00 0.00 41.42 4.30
204 205 1.081442 CAAGCCCGTTTTCGCTTCC 60.081 57.895 0.00 0.00 43.35 3.46
205 206 0.309612 TTCAAGCCCGTTTTCGCTTC 59.690 50.000 0.00 0.00 43.35 3.86
206 207 0.958822 ATTCAAGCCCGTTTTCGCTT 59.041 45.000 0.00 0.00 46.06 4.68
207 208 0.958822 AATTCAAGCCCGTTTTCGCT 59.041 45.000 0.00 0.00 42.58 4.93
208 209 1.059942 CAATTCAAGCCCGTTTTCGC 58.940 50.000 0.00 0.00 42.58 4.70
209 210 1.059942 GCAATTCAAGCCCGTTTTCG 58.940 50.000 0.00 0.00 43.67 3.46
210 211 1.428448 GGCAATTCAAGCCCGTTTTC 58.572 50.000 0.00 0.00 46.50 2.29
211 212 3.605013 GGCAATTCAAGCCCGTTTT 57.395 47.368 0.00 0.00 46.50 2.43
218 219 6.303021 TGAAAATGAAAAGGCAATTCAAGC 57.697 33.333 8.70 0.00 39.98 4.01
219 220 9.815936 GTATTGAAAATGAAAAGGCAATTCAAG 57.184 29.630 8.70 0.00 39.98 3.02
220 221 9.334947 TGTATTGAAAATGAAAAGGCAATTCAA 57.665 25.926 8.70 0.00 39.98 2.69
221 222 8.899427 TGTATTGAAAATGAAAAGGCAATTCA 57.101 26.923 7.32 7.32 40.76 2.57
225 226 9.334947 TGAATTGTATTGAAAATGAAAAGGCAA 57.665 25.926 0.00 0.00 0.00 4.52
226 227 8.899427 TGAATTGTATTGAAAATGAAAAGGCA 57.101 26.923 0.00 0.00 0.00 4.75
227 228 8.992073 ACTGAATTGTATTGAAAATGAAAAGGC 58.008 29.630 0.00 0.00 0.00 4.35
231 232 9.474920 GGACACTGAATTGTATTGAAAATGAAA 57.525 29.630 0.00 0.00 0.00 2.69
232 233 8.637099 TGGACACTGAATTGTATTGAAAATGAA 58.363 29.630 0.00 0.00 0.00 2.57
233 234 8.175925 TGGACACTGAATTGTATTGAAAATGA 57.824 30.769 0.00 0.00 0.00 2.57
234 235 7.062605 GCTGGACACTGAATTGTATTGAAAATG 59.937 37.037 0.00 0.00 0.00 2.32
235 236 7.092716 GCTGGACACTGAATTGTATTGAAAAT 58.907 34.615 0.00 0.00 0.00 1.82
236 237 6.446318 GCTGGACACTGAATTGTATTGAAAA 58.554 36.000 0.00 0.00 0.00 2.29
237 238 5.048083 GGCTGGACACTGAATTGTATTGAAA 60.048 40.000 0.00 0.00 0.00 2.69
238 239 4.458989 GGCTGGACACTGAATTGTATTGAA 59.541 41.667 0.00 0.00 0.00 2.69
239 240 4.009675 GGCTGGACACTGAATTGTATTGA 58.990 43.478 0.00 0.00 0.00 2.57
240 241 3.758023 TGGCTGGACACTGAATTGTATTG 59.242 43.478 0.00 0.00 0.00 1.90
241 242 4.032960 TGGCTGGACACTGAATTGTATT 57.967 40.909 0.00 0.00 0.00 1.89
242 243 3.719268 TGGCTGGACACTGAATTGTAT 57.281 42.857 0.00 0.00 0.00 2.29
243 244 3.500448 TTGGCTGGACACTGAATTGTA 57.500 42.857 0.00 0.00 0.00 2.41
244 245 2.362077 GTTTGGCTGGACACTGAATTGT 59.638 45.455 0.00 0.00 0.00 2.71
245 246 2.605338 CGTTTGGCTGGACACTGAATTG 60.605 50.000 0.00 0.00 0.00 2.32
246 247 1.608590 CGTTTGGCTGGACACTGAATT 59.391 47.619 0.00 0.00 0.00 2.17
247 248 1.238439 CGTTTGGCTGGACACTGAAT 58.762 50.000 0.00 0.00 0.00 2.57
248 249 0.107410 ACGTTTGGCTGGACACTGAA 60.107 50.000 0.00 0.00 0.00 3.02
249 250 0.531974 GACGTTTGGCTGGACACTGA 60.532 55.000 0.00 0.00 0.00 3.41
250 251 1.507141 GGACGTTTGGCTGGACACTG 61.507 60.000 0.00 0.00 0.00 3.66
251 252 1.227853 GGACGTTTGGCTGGACACT 60.228 57.895 0.00 0.00 0.00 3.55
252 253 2.604174 CGGACGTTTGGCTGGACAC 61.604 63.158 0.00 0.00 0.00 3.67
253 254 1.746322 TACGGACGTTTGGCTGGACA 61.746 55.000 1.57 0.00 0.00 4.02
254 255 0.390735 ATACGGACGTTTGGCTGGAC 60.391 55.000 1.57 0.00 0.00 4.02
255 256 0.322322 AATACGGACGTTTGGCTGGA 59.678 50.000 1.57 0.00 0.00 3.86
256 257 0.446222 CAATACGGACGTTTGGCTGG 59.554 55.000 1.57 0.00 0.00 4.85
257 258 1.127951 GTCAATACGGACGTTTGGCTG 59.872 52.381 1.57 0.00 0.00 4.85
258 259 1.435577 GTCAATACGGACGTTTGGCT 58.564 50.000 1.57 0.00 0.00 4.75
259 260 0.445043 GGTCAATACGGACGTTTGGC 59.555 55.000 1.57 8.86 38.70 4.52
260 261 1.081094 GGGTCAATACGGACGTTTGG 58.919 55.000 1.57 0.00 38.70 3.28
261 262 1.730064 CTGGGTCAATACGGACGTTTG 59.270 52.381 1.57 7.85 38.70 2.93
262 263 1.619827 TCTGGGTCAATACGGACGTTT 59.380 47.619 1.57 0.00 38.70 3.60
263 264 1.259609 TCTGGGTCAATACGGACGTT 58.740 50.000 1.57 0.00 38.70 3.99
264 265 1.136305 CATCTGGGTCAATACGGACGT 59.864 52.381 1.98 1.98 38.70 4.34
265 266 1.407618 TCATCTGGGTCAATACGGACG 59.592 52.381 0.00 0.00 38.70 4.79
266 267 3.753294 ATCATCTGGGTCAATACGGAC 57.247 47.619 0.00 0.00 37.06 4.79
267 268 4.261867 CGTAATCATCTGGGTCAATACGGA 60.262 45.833 0.00 0.00 33.30 4.69
268 269 3.987868 CGTAATCATCTGGGTCAATACGG 59.012 47.826 0.00 0.00 33.30 4.02
269 270 4.866921 TCGTAATCATCTGGGTCAATACG 58.133 43.478 0.00 0.00 36.99 3.06
270 271 7.095187 GGATTTCGTAATCATCTGGGTCAATAC 60.095 40.741 15.48 0.00 41.62 1.89
271 272 6.934645 GGATTTCGTAATCATCTGGGTCAATA 59.065 38.462 15.48 0.00 41.62 1.90
272 273 5.765182 GGATTTCGTAATCATCTGGGTCAAT 59.235 40.000 15.48 0.00 41.62 2.57
273 274 5.123227 GGATTTCGTAATCATCTGGGTCAA 58.877 41.667 15.48 0.00 41.62 3.18
274 275 4.163268 TGGATTTCGTAATCATCTGGGTCA 59.837 41.667 15.48 0.69 41.62 4.02
275 276 4.703897 TGGATTTCGTAATCATCTGGGTC 58.296 43.478 15.48 0.00 41.62 4.46
276 277 4.771114 TGGATTTCGTAATCATCTGGGT 57.229 40.909 15.48 0.00 41.62 4.51
277 278 6.294176 GGAAATGGATTTCGTAATCATCTGGG 60.294 42.308 15.48 0.00 45.37 4.45
278 279 6.488006 AGGAAATGGATTTCGTAATCATCTGG 59.512 38.462 15.48 0.00 45.37 3.86
279 280 7.358066 CAGGAAATGGATTTCGTAATCATCTG 58.642 38.462 15.48 9.28 45.37 2.90
280 281 7.502120 CAGGAAATGGATTTCGTAATCATCT 57.498 36.000 15.48 0.00 45.37 2.90
294 295 6.948373 CTCAATTGGAGCCCAGGAAATGGA 62.948 50.000 5.42 0.00 44.00 3.41
295 296 4.752890 CTCAATTGGAGCCCAGGAAATGG 61.753 52.174 5.42 0.00 40.98 3.16
296 297 2.429610 CTCAATTGGAGCCCAGGAAATG 59.570 50.000 5.42 0.00 36.69 2.32
297 298 2.312741 TCTCAATTGGAGCCCAGGAAAT 59.687 45.455 5.42 0.00 43.70 2.17
298 299 1.710244 TCTCAATTGGAGCCCAGGAAA 59.290 47.619 5.42 0.00 43.70 3.13
299 300 1.004745 GTCTCAATTGGAGCCCAGGAA 59.995 52.381 5.42 0.00 43.70 3.36
300 301 0.620556 GTCTCAATTGGAGCCCAGGA 59.379 55.000 5.42 0.00 43.70 3.86
301 302 0.329261 TGTCTCAATTGGAGCCCAGG 59.671 55.000 5.42 0.00 43.70 4.45
302 303 2.295885 GATGTCTCAATTGGAGCCCAG 58.704 52.381 5.42 0.00 43.70 4.45
303 304 1.064463 GGATGTCTCAATTGGAGCCCA 60.064 52.381 5.42 3.35 43.70 5.36
304 305 1.064463 TGGATGTCTCAATTGGAGCCC 60.064 52.381 5.42 4.48 43.70 5.19
305 306 2.425143 TGGATGTCTCAATTGGAGCC 57.575 50.000 5.42 0.69 43.70 4.70
306 307 3.426695 CGTTTGGATGTCTCAATTGGAGC 60.427 47.826 5.42 0.00 43.70 4.70
307 308 3.426695 GCGTTTGGATGTCTCAATTGGAG 60.427 47.826 5.42 2.26 45.49 3.86
308 309 2.487762 GCGTTTGGATGTCTCAATTGGA 59.512 45.455 5.42 0.00 0.00 3.53
309 310 2.228582 TGCGTTTGGATGTCTCAATTGG 59.771 45.455 5.42 0.00 0.00 3.16
310 311 3.058016 ACTGCGTTTGGATGTCTCAATTG 60.058 43.478 0.00 0.00 0.00 2.32
311 312 3.058016 CACTGCGTTTGGATGTCTCAATT 60.058 43.478 0.00 0.00 0.00 2.32
312 313 2.485426 CACTGCGTTTGGATGTCTCAAT 59.515 45.455 0.00 0.00 0.00 2.57
313 314 1.872952 CACTGCGTTTGGATGTCTCAA 59.127 47.619 0.00 0.00 0.00 3.02
314 315 1.202639 ACACTGCGTTTGGATGTCTCA 60.203 47.619 0.00 0.00 0.00 3.27
315 316 1.512926 ACACTGCGTTTGGATGTCTC 58.487 50.000 0.00 0.00 0.00 3.36
316 317 2.806244 GTTACACTGCGTTTGGATGTCT 59.194 45.455 0.00 0.00 0.00 3.41
317 318 2.806244 AGTTACACTGCGTTTGGATGTC 59.194 45.455 0.00 0.00 0.00 3.06
318 319 2.548057 CAGTTACACTGCGTTTGGATGT 59.452 45.455 0.00 0.00 39.62 3.06
319 320 2.805671 TCAGTTACACTGCGTTTGGATG 59.194 45.455 0.00 0.00 45.54 3.51
320 321 3.120321 TCAGTTACACTGCGTTTGGAT 57.880 42.857 0.00 0.00 45.54 3.41
321 322 2.605837 TCAGTTACACTGCGTTTGGA 57.394 45.000 0.00 0.00 45.54 3.53
322 323 3.684103 TTTCAGTTACACTGCGTTTGG 57.316 42.857 0.00 0.00 45.54 3.28
323 324 5.514914 ACAAATTTCAGTTACACTGCGTTTG 59.485 36.000 17.44 17.44 45.54 2.93
324 325 5.646606 ACAAATTTCAGTTACACTGCGTTT 58.353 33.333 0.00 0.00 45.54 3.60
325 326 5.243426 ACAAATTTCAGTTACACTGCGTT 57.757 34.783 0.00 0.00 45.54 4.84
326 327 4.893424 ACAAATTTCAGTTACACTGCGT 57.107 36.364 0.00 0.00 45.54 5.24
327 328 4.085619 GCAACAAATTTCAGTTACACTGCG 60.086 41.667 0.00 0.00 45.54 5.18
328 329 4.803088 TGCAACAAATTTCAGTTACACTGC 59.197 37.500 0.00 0.00 45.54 4.40
330 331 6.035843 CACTGCAACAAATTTCAGTTACACT 58.964 36.000 7.36 0.00 37.66 3.55
331 332 5.804979 ACACTGCAACAAATTTCAGTTACAC 59.195 36.000 7.36 0.00 37.66 2.90
337 338 3.847037 GCACACTGCAACAAATTTCAG 57.153 42.857 3.69 3.69 44.26 3.02
406 407 4.579340 CAGACAAATGGAGATCAGGATTGG 59.421 45.833 0.00 0.00 0.00 3.16
409 410 5.908562 ATCAGACAAATGGAGATCAGGAT 57.091 39.130 0.00 0.00 0.00 3.24
412 413 7.724287 TCTCTTATCAGACAAATGGAGATCAG 58.276 38.462 0.00 0.00 0.00 2.90
475 476 7.012421 GGAATGTGTAGTATTTCTGTTCCATCC 59.988 40.741 0.00 0.00 34.28 3.51
526 527 6.238610 ACGATCGGTACATATCAGAACTAC 57.761 41.667 20.98 0.00 0.00 2.73
913 914 4.647424 TTTGAAACGAGATGGCAAAACT 57.353 36.364 0.00 0.00 0.00 2.66
1076 1077 7.922505 TTATTACGAACCATATGCAAAATGC 57.077 32.000 6.84 0.00 45.29 3.56
1140 1141 5.131475 AGTTACCAGGGTTTTCACAGTAGAA 59.869 40.000 0.00 0.00 0.00 2.10
1179 1180 2.709397 ACGGTAGGGCCTATAATTTGCT 59.291 45.455 17.90 0.00 34.25 3.91
1198 1199 4.083324 ACTGGTAGAATTGAATGTGCAACG 60.083 41.667 0.00 0.00 42.39 4.10
1207 1208 7.942341 ACATGGAAAGTAACTGGTAGAATTGAA 59.058 33.333 0.00 0.00 0.00 2.69
1365 1375 1.537202 AGAAAACAGAAGTGCGGCATC 59.463 47.619 5.72 0.00 0.00 3.91
1387 1397 0.248012 TGGTGGCAGTGGTGTATACG 59.752 55.000 0.00 0.00 0.00 3.06
1433 2480 5.990668 ACTAGATGGTTATTGGAGGAACAC 58.009 41.667 0.00 0.00 0.00 3.32
1480 2529 1.215423 AGTTGAGCACCTTCTTTGGGT 59.785 47.619 0.00 0.00 37.59 4.51
1481 2530 1.882623 GAGTTGAGCACCTTCTTTGGG 59.117 52.381 0.00 0.00 0.00 4.12
1482 2531 2.856222 AGAGTTGAGCACCTTCTTTGG 58.144 47.619 0.00 0.00 0.00 3.28
1483 2532 3.879295 TCAAGAGTTGAGCACCTTCTTTG 59.121 43.478 0.00 0.00 34.08 2.77
1623 2672 8.116026 ACTCAAAATTAAGGGGTTCATAGACAT 58.884 33.333 0.00 0.00 0.00 3.06
1675 2725 2.690840 AGTTCTGTGGGACAGTAACCT 58.309 47.619 3.75 0.00 46.03 3.50
1763 2813 2.927477 GGCTAAATCGACGATCAACACA 59.073 45.455 11.42 0.00 0.00 3.72
1791 2841 1.207089 CATCCCTGTCAGTTAAGCGGA 59.793 52.381 0.00 0.00 0.00 5.54
1827 2877 4.929707 CCGTTAGGGCCGCCATCC 62.930 72.222 12.58 0.00 0.00 3.51
1934 3031 1.005450 GGGAGAGGAGTGAGTGAGAGT 59.995 57.143 0.00 0.00 0.00 3.24
2047 3185 2.816360 TACTCGTCATCGTCGGCGG 61.816 63.158 10.62 0.00 38.89 6.13
2079 3223 5.824904 AAATACTCCATCTGCATGTTGTC 57.175 39.130 0.00 0.00 0.00 3.18
2224 3378 2.162681 GGAGTTTGCTGCAGTACCAAT 58.837 47.619 16.64 0.00 32.93 3.16
2347 3501 4.099633 TGAATCTCCTTCCAGTGTCAGAT 58.900 43.478 0.00 0.00 32.49 2.90
2348 3502 3.510459 TGAATCTCCTTCCAGTGTCAGA 58.490 45.455 0.00 0.00 32.49 3.27
2376 3530 4.081862 TGTTTGCTCTTACCGTAGTAGCAT 60.082 41.667 14.31 0.00 30.10 3.79
2406 3566 5.951747 ACCAAATAAAGCTACACATGGACAT 59.048 36.000 13.01 0.00 0.00 3.06
2410 3570 4.462483 ACCACCAAATAAAGCTACACATGG 59.538 41.667 0.00 6.30 0.00 3.66
2500 3660 0.385390 CAAAGAACACCACACCAGCC 59.615 55.000 0.00 0.00 0.00 4.85
2680 3867 1.004745 CAAGGGGCATCTACCAACACT 59.995 52.381 0.00 0.00 0.00 3.55
2682 3869 0.331278 CCAAGGGGCATCTACCAACA 59.669 55.000 0.00 0.00 0.00 3.33
2735 3922 5.394663 GGTTCTCCTCATGATACATATCCCG 60.395 48.000 0.00 0.00 31.71 5.14
2830 4020 4.526650 TCCACAAGCTGACTGTACTGATTA 59.473 41.667 6.77 0.00 0.00 1.75
2965 4165 4.588106 TCCATTTCAACCTCAATCTTTGCA 59.412 37.500 0.00 0.00 0.00 4.08
3046 4246 1.367471 GGCCTTCCTGGTGTTTTGC 59.633 57.895 0.00 0.00 38.35 3.68
3364 4675 3.181456 CCCACACCACAACCAAAATGATT 60.181 43.478 0.00 0.00 0.00 2.57
3501 4818 2.441750 GGGGATGCAACCACTTAGGATA 59.558 50.000 15.68 0.00 41.22 2.59
3502 4819 1.215423 GGGGATGCAACCACTTAGGAT 59.785 52.381 15.68 0.00 41.22 3.24
3503 4820 0.623723 GGGGATGCAACCACTTAGGA 59.376 55.000 15.68 0.00 41.22 2.94
3504 4821 0.625849 AGGGGATGCAACCACTTAGG 59.374 55.000 12.87 0.00 41.39 2.69
3505 4822 2.421529 GGTAGGGGATGCAACCACTTAG 60.422 54.545 24.24 0.00 41.39 2.18
3506 4823 1.562475 GGTAGGGGATGCAACCACTTA 59.438 52.381 24.24 6.71 41.39 2.24
3507 4824 0.331616 GGTAGGGGATGCAACCACTT 59.668 55.000 24.24 7.73 41.39 3.16
3508 4825 0.550147 AGGTAGGGGATGCAACCACT 60.550 55.000 22.64 22.64 46.37 4.00
3509 4826 0.394352 CAGGTAGGGGATGCAACCAC 60.394 60.000 15.68 11.83 34.29 4.16
3510 4827 0.844661 ACAGGTAGGGGATGCAACCA 60.845 55.000 15.68 0.00 34.29 3.67
3511 4828 1.209621 TACAGGTAGGGGATGCAACC 58.790 55.000 4.00 4.00 0.00 3.77
3512 4829 3.577805 ATTACAGGTAGGGGATGCAAC 57.422 47.619 0.00 0.00 0.00 4.17
3513 4830 4.042809 CCATATTACAGGTAGGGGATGCAA 59.957 45.833 0.00 0.00 0.00 4.08
3514 4831 3.587061 CCATATTACAGGTAGGGGATGCA 59.413 47.826 0.00 0.00 0.00 3.96
3515 4832 3.587506 ACCATATTACAGGTAGGGGATGC 59.412 47.826 0.00 0.00 36.07 3.91
3516 4833 4.225267 GGACCATATTACAGGTAGGGGATG 59.775 50.000 0.00 0.00 38.50 3.51
3517 4834 4.111424 AGGACCATATTACAGGTAGGGGAT 59.889 45.833 0.00 0.00 38.50 3.85
3518 4835 3.473621 AGGACCATATTACAGGTAGGGGA 59.526 47.826 0.00 0.00 38.50 4.81
3519 4836 3.583086 CAGGACCATATTACAGGTAGGGG 59.417 52.174 0.00 0.00 38.50 4.79
3520 4837 4.489737 TCAGGACCATATTACAGGTAGGG 58.510 47.826 0.00 0.00 38.50 3.53
3571 4905 7.066525 CCTTTCTTCAGTGTTACCAAGTTTGTA 59.933 37.037 0.00 0.00 0.00 2.41
3592 4926 6.183360 CCTCCTATGTGAACTACCTACCTTTC 60.183 46.154 0.00 0.00 0.00 2.62
3669 5043 2.535984 GTCAGTTTCGTCAGTGTCAGTG 59.464 50.000 0.78 0.78 0.00 3.66
3702 5076 6.331061 ACTACCTATGTCAGTTTCGTCAATC 58.669 40.000 0.00 0.00 0.00 2.67
3765 5145 6.572509 GCAGGACAGACAACTAAGTGAATCTA 60.573 42.308 0.00 0.00 0.00 1.98
3839 5219 2.372172 GGAAGAGAAGGTGGAGGTGAAA 59.628 50.000 0.00 0.00 0.00 2.69
3841 5221 1.150135 AGGAAGAGAAGGTGGAGGTGA 59.850 52.381 0.00 0.00 0.00 4.02
3853 5233 3.375610 CGATGAAGACGAAGAGGAAGAGA 59.624 47.826 0.00 0.00 0.00 3.10
3920 5306 2.662249 CGACCTATAGATCGTCGCACAC 60.662 54.545 8.46 0.00 42.37 3.82
3934 5320 0.649475 CGAAGACGACGACGACCTAT 59.351 55.000 15.32 0.00 42.66 2.57
4024 5416 2.124403 GTGATGCTGGGCAGAGGG 60.124 66.667 0.00 0.00 43.65 4.30
4084 5476 1.285280 CCCAGGTAAGGTGGTCATGA 58.715 55.000 0.00 0.00 32.62 3.07
4174 5566 1.340211 CCAGTGTTATTGGGCCGGTAA 60.340 52.381 1.90 0.00 31.87 2.85
4179 5571 2.089201 GTACACCAGTGTTATTGGGCC 58.911 52.381 9.01 0.00 41.83 5.80
4188 5580 0.324943 GCCATGAGGTACACCAGTGT 59.675 55.000 8.71 8.71 40.53 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.