Multiple sequence alignment - TraesCS5A01G070100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G070100 chr5A 100.000 3167 0 0 1 3167 78425465 78428631 0.000000e+00 5849.0
1 TraesCS5A01G070100 chr5A 89.369 1411 131 13 839 2241 78368722 78370121 0.000000e+00 1757.0
2 TraesCS5A01G070100 chr5A 83.772 1177 131 37 558 1721 78473941 78475070 0.000000e+00 1061.0
3 TraesCS5A01G070100 chr5A 90.363 633 58 3 2537 3167 78379668 78380299 0.000000e+00 828.0
4 TraesCS5A01G070100 chr5A 94.005 417 21 3 408 820 78368188 78368604 2.070000e-176 628.0
5 TraesCS5A01G070100 chr5A 90.291 412 37 3 1 410 19622566 19622976 1.290000e-148 536.0
6 TraesCS5A01G070100 chr5A 87.898 314 24 7 2234 2544 78379204 78379506 1.080000e-94 357.0
7 TraesCS5A01G070100 chr5A 85.804 317 34 8 2509 2823 78328066 78328373 3.050000e-85 326.0
8 TraesCS5A01G070100 chr5A 83.476 351 35 9 2599 2939 78314599 78314936 3.970000e-79 305.0
9 TraesCS5A01G070100 chr5A 80.939 362 54 9 2815 3165 78328419 78328776 4.030000e-69 272.0
10 TraesCS5A01G070100 chr5A 91.597 119 6 3 408 525 78473827 78473942 9.090000e-36 161.0
11 TraesCS5A01G070100 chr5B 89.936 1242 88 9 502 1742 90987751 90988956 0.000000e+00 1567.0
12 TraesCS5A01G070100 chr5B 88.967 1278 96 16 1792 3059 90989847 90991089 0.000000e+00 1537.0
13 TraesCS5A01G070100 chr5B 85.166 1328 159 19 408 1721 91108193 91109496 0.000000e+00 1327.0
14 TraesCS5A01G070100 chr5B 93.578 109 6 1 411 518 90987617 90987725 9.090000e-36 161.0
15 TraesCS5A01G070100 chr5B 97.222 36 1 0 1744 1779 90989263 90989298 9.490000e-06 62.1
16 TraesCS5A01G070100 chr5D 82.818 873 104 31 860 1721 84178047 84178884 0.000000e+00 739.0
17 TraesCS5A01G070100 chr5D 76.872 1055 177 44 497 1526 84185084 84186096 4.650000e-148 534.0
18 TraesCS5A01G070100 chr5D 89.905 317 28 4 2599 2913 82314845 82315159 3.800000e-109 405.0
19 TraesCS5A01G070100 chr5D 84.262 305 34 5 558 861 84011506 84011797 5.170000e-73 285.0
20 TraesCS5A01G070100 chr5D 90.678 118 9 2 408 525 84011392 84011507 4.230000e-34 156.0
21 TraesCS5A01G070100 chr2D 78.243 956 159 41 813 1729 547791561 547790616 4.580000e-158 568.0
22 TraesCS5A01G070100 chr2D 90.571 403 37 1 1 403 15753566 15753967 1.670000e-147 532.0
23 TraesCS5A01G070100 chr7D 91.463 410 35 0 1 410 481860348 481860757 5.930000e-157 564.0
24 TraesCS5A01G070100 chr7D 87.961 407 47 1 3 409 392621964 392621560 2.210000e-131 479.0
25 TraesCS5A01G070100 chr2A 78.030 924 151 37 777 1656 691119616 691120531 4.650000e-148 534.0
26 TraesCS5A01G070100 chrUn 80.274 730 123 16 813 1525 248122975 248122250 6.010000e-147 531.0
27 TraesCS5A01G070100 chrUn 81.173 648 105 12 893 1525 281905476 281906121 3.650000e-139 505.0
28 TraesCS5A01G070100 chr2B 80.627 702 115 16 841 1525 654727094 654726397 1.010000e-144 523.0
29 TraesCS5A01G070100 chr2B 81.385 650 104 12 891 1525 654699585 654698938 6.060000e-142 514.0
30 TraesCS5A01G070100 chr2B 89.082 403 44 0 1 403 522857917 522857515 4.720000e-138 501.0
31 TraesCS5A01G070100 chr1A 88.698 407 45 1 4 410 474387861 474387456 2.190000e-136 496.0
32 TraesCS5A01G070100 chr3B 88.337 403 45 2 1 403 613565538 613565938 1.710000e-132 483.0
33 TraesCS5A01G070100 chr3A 87.805 410 48 2 1 409 196416631 196416223 2.210000e-131 479.0
34 TraesCS5A01G070100 chr7B 87.901 405 47 1 5 409 388831956 388831554 2.860000e-130 475.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G070100 chr5A 78425465 78428631 3166 False 5849.000 5849 100.00000 1 3167 1 chr5A.!!$F3 3166
1 TraesCS5A01G070100 chr5A 78368188 78370121 1933 False 1192.500 1757 91.68700 408 2241 2 chr5A.!!$F5 1833
2 TraesCS5A01G070100 chr5A 78473827 78475070 1243 False 611.000 1061 87.68450 408 1721 2 chr5A.!!$F7 1313
3 TraesCS5A01G070100 chr5A 78379204 78380299 1095 False 592.500 828 89.13050 2234 3167 2 chr5A.!!$F6 933
4 TraesCS5A01G070100 chr5A 78328066 78328776 710 False 299.000 326 83.37150 2509 3165 2 chr5A.!!$F4 656
5 TraesCS5A01G070100 chr5B 91108193 91109496 1303 False 1327.000 1327 85.16600 408 1721 1 chr5B.!!$F1 1313
6 TraesCS5A01G070100 chr5B 90987617 90991089 3472 False 831.775 1567 92.42575 411 3059 4 chr5B.!!$F2 2648
7 TraesCS5A01G070100 chr5D 84178047 84178884 837 False 739.000 739 82.81800 860 1721 1 chr5D.!!$F2 861
8 TraesCS5A01G070100 chr5D 84185084 84186096 1012 False 534.000 534 76.87200 497 1526 1 chr5D.!!$F3 1029
9 TraesCS5A01G070100 chr2D 547790616 547791561 945 True 568.000 568 78.24300 813 1729 1 chr2D.!!$R1 916
10 TraesCS5A01G070100 chr2A 691119616 691120531 915 False 534.000 534 78.03000 777 1656 1 chr2A.!!$F1 879
11 TraesCS5A01G070100 chrUn 248122250 248122975 725 True 531.000 531 80.27400 813 1525 1 chrUn.!!$R1 712
12 TraesCS5A01G070100 chrUn 281905476 281906121 645 False 505.000 505 81.17300 893 1525 1 chrUn.!!$F1 632
13 TraesCS5A01G070100 chr2B 654726397 654727094 697 True 523.000 523 80.62700 841 1525 1 chr2B.!!$R3 684
14 TraesCS5A01G070100 chr2B 654698938 654699585 647 True 514.000 514 81.38500 891 1525 1 chr2B.!!$R2 634

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
90 91 0.029300 ACAACAACATCGTGCACTGC 59.971 50.0 16.19 0.0 0.0 4.40 F
93 94 0.034756 ACAACATCGTGCACTGCCTA 59.965 50.0 16.19 0.0 0.0 3.93 F
370 371 0.107703 CAGCGCTCCCCAACTAATGA 60.108 55.0 7.13 0.0 0.0 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2058 3201 0.106769 ACATGTGGTGTGCAGGTCAA 60.107 50.0 0.00 0.0 40.28 3.18 R
2090 3234 5.344933 GCGAGGGTGACAAAAATAACAAATC 59.655 40.0 0.00 0.0 0.00 2.17 R
2289 3433 0.107410 GGTCCATGGCCGTCAACATA 60.107 55.0 6.96 0.0 0.00 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.443054 TCGTTCGCCAAAGTAATTTCG 57.557 42.857 0.00 0.00 0.00 3.46
22 23 1.902504 CGTTCGCCAAAGTAATTTCGC 59.097 47.619 0.00 0.00 0.00 4.70
23 24 1.902504 GTTCGCCAAAGTAATTTCGCG 59.097 47.619 19.16 19.16 38.25 5.87
24 25 1.430479 TCGCCAAAGTAATTTCGCGA 58.570 45.000 22.79 22.79 41.40 5.87
25 26 1.392168 TCGCCAAAGTAATTTCGCGAG 59.608 47.619 22.79 0.72 39.85 5.03
26 27 1.392168 CGCCAAAGTAATTTCGCGAGA 59.608 47.619 20.28 4.97 38.84 4.04
27 28 2.534939 CGCCAAAGTAATTTCGCGAGAG 60.535 50.000 20.28 0.00 43.69 3.20
28 29 2.223044 GCCAAAGTAATTTCGCGAGAGG 60.223 50.000 9.59 1.34 43.69 3.69
29 30 2.351726 CCAAAGTAATTTCGCGAGAGGG 59.648 50.000 9.59 0.00 43.69 4.30
30 31 1.653151 AAGTAATTTCGCGAGAGGGC 58.347 50.000 9.59 1.21 43.69 5.19
31 32 0.535335 AGTAATTTCGCGAGAGGGCA 59.465 50.000 9.59 0.00 43.69 5.36
32 33 1.066430 AGTAATTTCGCGAGAGGGCAA 60.066 47.619 9.59 0.00 43.69 4.52
33 34 1.940613 GTAATTTCGCGAGAGGGCAAT 59.059 47.619 9.59 1.74 41.15 3.56
34 35 1.017387 AATTTCGCGAGAGGGCAATC 58.983 50.000 9.59 0.00 38.77 2.67
35 36 0.179000 ATTTCGCGAGAGGGCAATCT 59.821 50.000 9.59 0.00 43.69 2.40
36 37 0.821517 TTTCGCGAGAGGGCAATCTA 59.178 50.000 9.59 0.00 43.69 1.98
37 38 1.040646 TTCGCGAGAGGGCAATCTAT 58.959 50.000 9.59 0.00 43.69 1.98
38 39 0.315251 TCGCGAGAGGGCAATCTATG 59.685 55.000 3.71 0.00 44.70 2.23
39 40 0.315251 CGCGAGAGGGCAATCTATGA 59.685 55.000 0.00 0.00 37.19 2.15
40 41 1.269778 CGCGAGAGGGCAATCTATGAA 60.270 52.381 0.00 0.00 37.19 2.57
41 42 2.611473 CGCGAGAGGGCAATCTATGAAT 60.611 50.000 0.00 0.00 37.19 2.57
42 43 3.367395 CGCGAGAGGGCAATCTATGAATA 60.367 47.826 0.00 0.00 37.19 1.75
43 44 4.180057 GCGAGAGGGCAATCTATGAATAG 58.820 47.826 0.00 0.00 0.00 1.73
44 45 4.753233 CGAGAGGGCAATCTATGAATAGG 58.247 47.826 0.00 0.00 0.00 2.57
45 46 4.512484 GAGAGGGCAATCTATGAATAGGC 58.488 47.826 0.00 0.00 0.00 3.93
46 47 3.055530 AGAGGGCAATCTATGAATAGGCG 60.056 47.826 0.00 0.00 0.00 5.52
47 48 2.639839 AGGGCAATCTATGAATAGGCGT 59.360 45.455 0.00 0.00 0.00 5.68
48 49 3.073062 AGGGCAATCTATGAATAGGCGTT 59.927 43.478 0.00 0.00 0.00 4.84
49 50 3.189287 GGGCAATCTATGAATAGGCGTTG 59.811 47.826 0.00 3.23 0.00 4.10
50 51 3.815401 GGCAATCTATGAATAGGCGTTGT 59.185 43.478 0.00 0.00 0.00 3.32
51 52 4.994852 GGCAATCTATGAATAGGCGTTGTA 59.005 41.667 0.00 0.00 0.00 2.41
52 53 5.643777 GGCAATCTATGAATAGGCGTTGTAT 59.356 40.000 0.00 0.00 0.00 2.29
53 54 6.149474 GGCAATCTATGAATAGGCGTTGTATT 59.851 38.462 0.00 0.00 0.00 1.89
54 55 7.017645 GCAATCTATGAATAGGCGTTGTATTG 58.982 38.462 0.00 0.00 0.00 1.90
55 56 7.307989 GCAATCTATGAATAGGCGTTGTATTGT 60.308 37.037 0.00 0.00 0.00 2.71
56 57 8.559536 CAATCTATGAATAGGCGTTGTATTGTT 58.440 33.333 0.00 0.00 0.00 2.83
57 58 8.677148 ATCTATGAATAGGCGTTGTATTGTTT 57.323 30.769 0.00 0.00 0.00 2.83
58 59 8.138365 TCTATGAATAGGCGTTGTATTGTTTC 57.862 34.615 0.00 0.00 0.00 2.78
59 60 5.211266 TGAATAGGCGTTGTATTGTTTCG 57.789 39.130 0.00 0.00 0.00 3.46
60 61 4.691685 TGAATAGGCGTTGTATTGTTTCGT 59.308 37.500 0.00 0.00 0.00 3.85
61 62 2.961522 AGGCGTTGTATTGTTTCGTG 57.038 45.000 0.00 0.00 0.00 4.35
62 63 2.485903 AGGCGTTGTATTGTTTCGTGA 58.514 42.857 0.00 0.00 0.00 4.35
63 64 3.071479 AGGCGTTGTATTGTTTCGTGAT 58.929 40.909 0.00 0.00 0.00 3.06
64 65 3.120338 AGGCGTTGTATTGTTTCGTGATG 60.120 43.478 0.00 0.00 0.00 3.07
65 66 3.120477 GGCGTTGTATTGTTTCGTGATGA 60.120 43.478 0.00 0.00 0.00 2.92
66 67 3.838550 GCGTTGTATTGTTTCGTGATGAC 59.161 43.478 0.00 0.00 0.00 3.06
67 68 4.391358 CGTTGTATTGTTTCGTGATGACC 58.609 43.478 0.00 0.00 0.00 4.02
68 69 4.084276 CGTTGTATTGTTTCGTGATGACCA 60.084 41.667 0.00 0.00 0.00 4.02
69 70 5.390461 CGTTGTATTGTTTCGTGATGACCAT 60.390 40.000 0.00 0.00 0.00 3.55
70 71 6.183360 CGTTGTATTGTTTCGTGATGACCATA 60.183 38.462 0.00 0.00 0.00 2.74
71 72 7.523219 GTTGTATTGTTTCGTGATGACCATAA 58.477 34.615 0.00 0.00 0.00 1.90
72 73 7.067532 TGTATTGTTTCGTGATGACCATAAC 57.932 36.000 0.00 0.00 0.00 1.89
73 74 6.651225 TGTATTGTTTCGTGATGACCATAACA 59.349 34.615 0.00 0.00 0.00 2.41
74 75 6.567687 ATTGTTTCGTGATGACCATAACAA 57.432 33.333 5.23 5.23 37.57 2.83
75 76 5.351233 TGTTTCGTGATGACCATAACAAC 57.649 39.130 0.00 0.00 0.00 3.32
76 77 4.816925 TGTTTCGTGATGACCATAACAACA 59.183 37.500 0.00 0.38 0.00 3.33
77 78 5.297029 TGTTTCGTGATGACCATAACAACAA 59.703 36.000 0.00 0.00 0.00 2.83
78 79 5.351233 TTCGTGATGACCATAACAACAAC 57.649 39.130 0.00 0.00 0.00 3.32
79 80 4.381411 TCGTGATGACCATAACAACAACA 58.619 39.130 0.00 0.00 0.00 3.33
80 81 5.000591 TCGTGATGACCATAACAACAACAT 58.999 37.500 0.00 0.00 0.00 2.71
81 82 5.121611 TCGTGATGACCATAACAACAACATC 59.878 40.000 0.00 0.00 34.98 3.06
82 83 5.323900 GTGATGACCATAACAACAACATCG 58.676 41.667 0.00 0.00 36.49 3.84
83 84 5.000591 TGATGACCATAACAACAACATCGT 58.999 37.500 0.00 0.00 36.49 3.73
84 85 4.740741 TGACCATAACAACAACATCGTG 57.259 40.909 0.00 0.00 0.00 4.35
85 86 3.058570 TGACCATAACAACAACATCGTGC 60.059 43.478 0.00 0.00 0.00 5.34
86 87 2.881513 ACCATAACAACAACATCGTGCA 59.118 40.909 0.00 0.00 0.00 4.57
87 88 3.233578 CCATAACAACAACATCGTGCAC 58.766 45.455 6.82 6.82 0.00 4.57
88 89 3.058293 CCATAACAACAACATCGTGCACT 60.058 43.478 16.19 0.00 0.00 4.40
89 90 2.473530 AACAACAACATCGTGCACTG 57.526 45.000 16.19 9.99 0.00 3.66
90 91 0.029300 ACAACAACATCGTGCACTGC 59.971 50.000 16.19 0.00 0.00 4.40
91 92 0.661187 CAACAACATCGTGCACTGCC 60.661 55.000 16.19 0.00 0.00 4.85
92 93 0.819259 AACAACATCGTGCACTGCCT 60.819 50.000 16.19 0.00 0.00 4.75
93 94 0.034756 ACAACATCGTGCACTGCCTA 59.965 50.000 16.19 0.00 0.00 3.93
94 95 0.443869 CAACATCGTGCACTGCCTAC 59.556 55.000 16.19 0.00 0.00 3.18
95 96 0.673644 AACATCGTGCACTGCCTACC 60.674 55.000 16.19 0.00 0.00 3.18
96 97 1.815421 CATCGTGCACTGCCTACCC 60.815 63.158 16.19 0.00 0.00 3.69
97 98 2.290287 ATCGTGCACTGCCTACCCA 61.290 57.895 16.19 0.00 0.00 4.51
98 99 1.836999 ATCGTGCACTGCCTACCCAA 61.837 55.000 16.19 0.00 0.00 4.12
99 100 2.325082 CGTGCACTGCCTACCCAAC 61.325 63.158 16.19 0.00 0.00 3.77
100 101 2.031919 TGCACTGCCTACCCAACG 59.968 61.111 0.00 0.00 0.00 4.10
101 102 2.032071 GCACTGCCTACCCAACGT 59.968 61.111 0.00 0.00 0.00 3.99
102 103 1.599797 GCACTGCCTACCCAACGTT 60.600 57.895 0.00 0.00 0.00 3.99
103 104 1.852067 GCACTGCCTACCCAACGTTG 61.852 60.000 21.47 21.47 0.00 4.10
104 105 1.599797 ACTGCCTACCCAACGTTGC 60.600 57.895 22.93 10.83 0.00 4.17
105 106 1.302511 CTGCCTACCCAACGTTGCT 60.303 57.895 22.93 11.88 0.00 3.91
106 107 0.889186 CTGCCTACCCAACGTTGCTT 60.889 55.000 22.93 13.30 0.00 3.91
107 108 0.466555 TGCCTACCCAACGTTGCTTT 60.467 50.000 22.93 10.82 0.00 3.51
108 109 1.202782 TGCCTACCCAACGTTGCTTTA 60.203 47.619 22.93 11.36 0.00 1.85
109 110 1.467342 GCCTACCCAACGTTGCTTTAG 59.533 52.381 22.93 18.88 0.00 1.85
110 111 2.774687 CCTACCCAACGTTGCTTTAGT 58.225 47.619 22.93 15.05 0.00 2.24
111 112 3.865684 GCCTACCCAACGTTGCTTTAGTA 60.866 47.826 22.93 15.34 0.00 1.82
112 113 4.317488 CCTACCCAACGTTGCTTTAGTAA 58.683 43.478 22.93 1.13 0.00 2.24
113 114 4.939439 CCTACCCAACGTTGCTTTAGTAAT 59.061 41.667 22.93 2.36 0.00 1.89
114 115 5.413523 CCTACCCAACGTTGCTTTAGTAATT 59.586 40.000 22.93 0.00 0.00 1.40
115 116 5.777850 ACCCAACGTTGCTTTAGTAATTT 57.222 34.783 22.93 0.00 0.00 1.82
116 117 6.880942 ACCCAACGTTGCTTTAGTAATTTA 57.119 33.333 22.93 0.00 0.00 1.40
117 118 7.457024 ACCCAACGTTGCTTTAGTAATTTAT 57.543 32.000 22.93 0.00 0.00 1.40
118 119 7.532571 ACCCAACGTTGCTTTAGTAATTTATC 58.467 34.615 22.93 0.00 0.00 1.75
119 120 7.392393 ACCCAACGTTGCTTTAGTAATTTATCT 59.608 33.333 22.93 0.00 0.00 1.98
120 121 8.241367 CCCAACGTTGCTTTAGTAATTTATCTT 58.759 33.333 22.93 0.00 0.00 2.40
121 122 9.620660 CCAACGTTGCTTTAGTAATTTATCTTT 57.379 29.630 22.93 0.00 0.00 2.52
123 124 9.620660 AACGTTGCTTTAGTAATTTATCTTTGG 57.379 29.630 0.00 0.00 0.00 3.28
124 125 8.789762 ACGTTGCTTTAGTAATTTATCTTTGGT 58.210 29.630 0.00 0.00 0.00 3.67
125 126 9.620660 CGTTGCTTTAGTAATTTATCTTTGGTT 57.379 29.630 0.00 0.00 0.00 3.67
140 141 6.317789 TCTTTGGTTAAGATCACTTGCTTG 57.682 37.500 0.00 0.00 37.96 4.01
141 142 5.827797 TCTTTGGTTAAGATCACTTGCTTGT 59.172 36.000 0.00 0.00 37.96 3.16
142 143 5.437289 TTGGTTAAGATCACTTGCTTGTG 57.563 39.130 0.00 3.77 37.53 3.33
143 144 4.460263 TGGTTAAGATCACTTGCTTGTGT 58.540 39.130 0.00 0.00 38.90 3.72
144 145 5.616270 TGGTTAAGATCACTTGCTTGTGTA 58.384 37.500 0.00 0.00 38.90 2.90
145 146 5.468746 TGGTTAAGATCACTTGCTTGTGTAC 59.531 40.000 0.00 0.00 38.90 2.90
146 147 5.468746 GGTTAAGATCACTTGCTTGTGTACA 59.531 40.000 0.00 0.00 38.90 2.90
147 148 6.017440 GGTTAAGATCACTTGCTTGTGTACAA 60.017 38.462 0.00 0.00 38.90 2.41
148 149 7.414436 GTTAAGATCACTTGCTTGTGTACAAA 58.586 34.615 0.00 0.00 38.90 2.83
149 150 5.424121 AGATCACTTGCTTGTGTACAAAC 57.576 39.130 0.00 0.00 38.90 2.93
150 151 4.275936 AGATCACTTGCTTGTGTACAAACC 59.724 41.667 0.00 0.00 38.90 3.27
151 152 3.348119 TCACTTGCTTGTGTACAAACCA 58.652 40.909 0.00 0.00 38.90 3.67
152 153 3.127895 TCACTTGCTTGTGTACAAACCAC 59.872 43.478 0.00 0.00 38.90 4.16
153 154 3.085533 ACTTGCTTGTGTACAAACCACA 58.914 40.909 0.00 0.00 40.87 4.17
154 155 3.699038 ACTTGCTTGTGTACAAACCACAT 59.301 39.130 0.00 0.00 42.05 3.21
155 156 3.706802 TGCTTGTGTACAAACCACATG 57.293 42.857 0.00 0.00 42.05 3.21
156 157 3.282885 TGCTTGTGTACAAACCACATGA 58.717 40.909 0.00 0.00 42.05 3.07
157 158 3.696548 TGCTTGTGTACAAACCACATGAA 59.303 39.130 0.00 0.00 42.05 2.57
158 159 4.340666 TGCTTGTGTACAAACCACATGAAT 59.659 37.500 0.00 0.00 42.05 2.57
159 160 5.532779 TGCTTGTGTACAAACCACATGAATA 59.467 36.000 0.00 0.00 42.05 1.75
160 161 6.208402 TGCTTGTGTACAAACCACATGAATAT 59.792 34.615 0.00 0.00 42.05 1.28
161 162 7.090173 GCTTGTGTACAAACCACATGAATATT 58.910 34.615 0.00 0.00 42.05 1.28
162 163 7.598493 GCTTGTGTACAAACCACATGAATATTT 59.402 33.333 0.00 0.00 42.05 1.40
163 164 9.474920 CTTGTGTACAAACCACATGAATATTTT 57.525 29.630 0.00 0.00 42.05 1.82
170 171 9.296400 ACAAACCACATGAATATTTTAATACGC 57.704 29.630 0.00 0.00 0.00 4.42
171 172 9.295214 CAAACCACATGAATATTTTAATACGCA 57.705 29.630 0.00 0.00 0.00 5.24
172 173 9.862371 AAACCACATGAATATTTTAATACGCAA 57.138 25.926 0.00 0.00 0.00 4.85
174 175 8.134895 ACCACATGAATATTTTAATACGCAAGG 58.865 33.333 0.00 0.00 46.39 3.61
175 176 7.594758 CCACATGAATATTTTAATACGCAAGGG 59.405 37.037 0.00 0.00 46.39 3.95
176 177 8.349245 CACATGAATATTTTAATACGCAAGGGA 58.651 33.333 0.00 0.00 46.39 4.20
177 178 8.908903 ACATGAATATTTTAATACGCAAGGGAA 58.091 29.630 0.00 0.00 46.39 3.97
178 179 9.180678 CATGAATATTTTAATACGCAAGGGAAC 57.819 33.333 0.00 0.00 46.39 3.62
201 202 9.931210 GAACCTTAACTTTCCAAATATGTATCG 57.069 33.333 0.00 0.00 0.00 2.92
202 203 9.675464 AACCTTAACTTTCCAAATATGTATCGA 57.325 29.630 0.00 0.00 0.00 3.59
203 204 9.847224 ACCTTAACTTTCCAAATATGTATCGAT 57.153 29.630 2.16 2.16 0.00 3.59
208 209 8.383318 ACTTTCCAAATATGTATCGATCTTGG 57.617 34.615 0.00 7.03 34.44 3.61
209 210 7.445402 ACTTTCCAAATATGTATCGATCTTGGG 59.555 37.037 0.00 0.00 34.03 4.12
210 211 6.680148 TCCAAATATGTATCGATCTTGGGA 57.320 37.500 0.00 0.00 34.03 4.37
211 212 7.257790 TCCAAATATGTATCGATCTTGGGAT 57.742 36.000 0.00 0.00 34.03 3.85
212 213 7.689299 TCCAAATATGTATCGATCTTGGGATT 58.311 34.615 0.00 0.00 34.03 3.01
213 214 7.607607 TCCAAATATGTATCGATCTTGGGATTG 59.392 37.037 0.00 1.19 34.03 2.67
214 215 7.148188 CCAAATATGTATCGATCTTGGGATTGG 60.148 40.741 0.00 6.73 34.82 3.16
215 216 3.769739 TGTATCGATCTTGGGATTGGG 57.230 47.619 0.00 0.00 34.82 4.12
216 217 2.224523 TGTATCGATCTTGGGATTGGGC 60.225 50.000 0.00 0.00 34.82 5.36
217 218 0.111253 ATCGATCTTGGGATTGGGCC 59.889 55.000 0.00 0.00 34.82 5.80
218 219 1.227102 CGATCTTGGGATTGGGCCA 59.773 57.895 0.00 0.00 31.46 5.36
219 220 0.820891 CGATCTTGGGATTGGGCCAG 60.821 60.000 6.23 0.00 31.46 4.85
220 221 0.552848 GATCTTGGGATTGGGCCAGA 59.447 55.000 6.23 0.00 31.46 3.86
221 222 1.009997 ATCTTGGGATTGGGCCAGAA 58.990 50.000 6.23 0.00 0.00 3.02
222 223 1.009997 TCTTGGGATTGGGCCAGAAT 58.990 50.000 6.23 1.14 0.00 2.40
223 224 1.362237 TCTTGGGATTGGGCCAGAATT 59.638 47.619 6.23 0.00 0.00 2.17
224 225 2.584965 TCTTGGGATTGGGCCAGAATTA 59.415 45.455 6.23 0.00 0.00 1.40
225 226 3.012274 TCTTGGGATTGGGCCAGAATTAA 59.988 43.478 6.23 0.30 0.00 1.40
226 227 3.704545 TGGGATTGGGCCAGAATTAAT 57.295 42.857 6.23 0.00 0.00 1.40
227 228 4.006247 TGGGATTGGGCCAGAATTAATT 57.994 40.909 6.23 0.00 0.00 1.40
228 229 5.149584 TGGGATTGGGCCAGAATTAATTA 57.850 39.130 6.23 0.00 0.00 1.40
229 230 5.533112 TGGGATTGGGCCAGAATTAATTAA 58.467 37.500 6.23 0.00 0.00 1.40
230 231 5.966935 TGGGATTGGGCCAGAATTAATTAAA 59.033 36.000 6.23 0.00 0.00 1.52
231 232 6.126911 TGGGATTGGGCCAGAATTAATTAAAC 60.127 38.462 6.23 0.26 0.00 2.01
232 233 6.099701 GGGATTGGGCCAGAATTAATTAAACT 59.900 38.462 6.23 2.59 0.00 2.66
233 234 7.210174 GGATTGGGCCAGAATTAATTAAACTC 58.790 38.462 6.23 2.63 0.00 3.01
234 235 7.147742 GGATTGGGCCAGAATTAATTAAACTCA 60.148 37.037 6.23 0.00 0.00 3.41
235 236 7.732222 TTGGGCCAGAATTAATTAAACTCAT 57.268 32.000 6.23 0.00 0.00 2.90
236 237 8.830915 TTGGGCCAGAATTAATTAAACTCATA 57.169 30.769 6.23 0.00 0.00 2.15
237 238 9.432982 TTGGGCCAGAATTAATTAAACTCATAT 57.567 29.630 6.23 0.00 0.00 1.78
252 253 7.496529 AAACTCATATACATGGATTTGACCG 57.503 36.000 6.94 2.27 32.61 4.79
253 254 6.174720 ACTCATATACATGGATTTGACCGT 57.825 37.500 6.94 2.84 32.61 4.83
254 255 7.297936 ACTCATATACATGGATTTGACCGTA 57.702 36.000 6.94 0.00 32.61 4.02
255 256 7.732025 ACTCATATACATGGATTTGACCGTAA 58.268 34.615 6.94 0.00 32.61 3.18
256 257 8.208224 ACTCATATACATGGATTTGACCGTAAA 58.792 33.333 6.94 0.00 32.61 2.01
257 258 8.373048 TCATATACATGGATTTGACCGTAAAC 57.627 34.615 6.94 0.00 32.61 2.01
258 259 7.988028 TCATATACATGGATTTGACCGTAAACA 59.012 33.333 6.94 0.00 32.61 2.83
259 260 4.759516 ACATGGATTTGACCGTAAACAC 57.240 40.909 0.00 0.00 0.00 3.32
260 261 4.394729 ACATGGATTTGACCGTAAACACT 58.605 39.130 0.00 0.00 0.00 3.55
261 262 4.454504 ACATGGATTTGACCGTAAACACTC 59.545 41.667 0.00 0.00 0.00 3.51
262 263 3.404899 TGGATTTGACCGTAAACACTCC 58.595 45.455 0.00 0.00 0.00 3.85
263 264 3.181453 TGGATTTGACCGTAAACACTCCA 60.181 43.478 0.00 0.00 0.00 3.86
264 265 4.007659 GGATTTGACCGTAAACACTCCAT 58.992 43.478 0.00 0.00 0.00 3.41
265 266 4.457949 GGATTTGACCGTAAACACTCCATT 59.542 41.667 0.00 0.00 0.00 3.16
266 267 5.048294 GGATTTGACCGTAAACACTCCATTT 60.048 40.000 0.00 0.00 0.00 2.32
267 268 5.427036 TTTGACCGTAAACACTCCATTTC 57.573 39.130 0.00 0.00 0.00 2.17
268 269 4.345859 TGACCGTAAACACTCCATTTCT 57.654 40.909 0.00 0.00 0.00 2.52
269 270 5.471556 TGACCGTAAACACTCCATTTCTA 57.528 39.130 0.00 0.00 0.00 2.10
270 271 5.475719 TGACCGTAAACACTCCATTTCTAG 58.524 41.667 0.00 0.00 0.00 2.43
271 272 4.251268 ACCGTAAACACTCCATTTCTAGC 58.749 43.478 0.00 0.00 0.00 3.42
272 273 4.020485 ACCGTAAACACTCCATTTCTAGCT 60.020 41.667 0.00 0.00 0.00 3.32
273 274 5.186409 ACCGTAAACACTCCATTTCTAGCTA 59.814 40.000 0.00 0.00 0.00 3.32
274 275 6.103997 CCGTAAACACTCCATTTCTAGCTAA 58.896 40.000 0.00 0.00 0.00 3.09
275 276 6.035758 CCGTAAACACTCCATTTCTAGCTAAC 59.964 42.308 0.00 0.00 0.00 2.34
276 277 6.812160 CGTAAACACTCCATTTCTAGCTAACT 59.188 38.462 0.00 0.00 0.00 2.24
277 278 7.331193 CGTAAACACTCCATTTCTAGCTAACTT 59.669 37.037 0.00 0.00 0.00 2.66
278 279 9.000486 GTAAACACTCCATTTCTAGCTAACTTT 58.000 33.333 0.00 0.00 0.00 2.66
279 280 7.674471 AACACTCCATTTCTAGCTAACTTTC 57.326 36.000 0.00 0.00 0.00 2.62
280 281 6.769512 ACACTCCATTTCTAGCTAACTTTCA 58.230 36.000 0.00 0.00 0.00 2.69
281 282 6.876257 ACACTCCATTTCTAGCTAACTTTCAG 59.124 38.462 0.00 0.00 0.00 3.02
282 283 6.876257 CACTCCATTTCTAGCTAACTTTCAGT 59.124 38.462 0.00 0.00 0.00 3.41
283 284 6.876257 ACTCCATTTCTAGCTAACTTTCAGTG 59.124 38.462 0.00 0.00 0.00 3.66
284 285 7.004555 TCCATTTCTAGCTAACTTTCAGTGA 57.995 36.000 0.00 0.00 0.00 3.41
285 286 7.450074 TCCATTTCTAGCTAACTTTCAGTGAA 58.550 34.615 0.08 0.08 0.00 3.18
286 287 7.936847 TCCATTTCTAGCTAACTTTCAGTGAAA 59.063 33.333 17.16 17.16 0.00 2.69
287 288 8.017946 CCATTTCTAGCTAACTTTCAGTGAAAC 58.982 37.037 14.35 4.76 0.00 2.78
288 289 6.764877 TTCTAGCTAACTTTCAGTGAAACG 57.235 37.500 14.35 12.51 45.86 3.60
289 290 6.080648 TCTAGCTAACTTTCAGTGAAACGA 57.919 37.500 14.35 2.22 45.86 3.85
290 291 6.150318 TCTAGCTAACTTTCAGTGAAACGAG 58.850 40.000 14.35 11.94 45.86 4.18
291 292 4.694339 AGCTAACTTTCAGTGAAACGAGT 58.306 39.130 14.35 8.43 45.86 4.18
292 293 4.745620 AGCTAACTTTCAGTGAAACGAGTC 59.254 41.667 14.35 4.62 45.86 3.36
293 294 4.506654 GCTAACTTTCAGTGAAACGAGTCA 59.493 41.667 14.35 0.00 45.86 3.41
294 295 5.332656 GCTAACTTTCAGTGAAACGAGTCAG 60.333 44.000 14.35 7.93 45.86 3.51
295 296 3.458189 ACTTTCAGTGAAACGAGTCAGG 58.542 45.455 14.35 5.11 45.86 3.86
296 297 3.118738 ACTTTCAGTGAAACGAGTCAGGT 60.119 43.478 14.35 5.72 45.86 4.00
297 298 3.536956 TTCAGTGAAACGAGTCAGGTT 57.463 42.857 2.20 0.00 45.86 3.50
298 299 2.821546 TCAGTGAAACGAGTCAGGTTG 58.178 47.619 0.00 0.00 45.86 3.77
299 300 1.867233 CAGTGAAACGAGTCAGGTTGG 59.133 52.381 0.00 0.00 45.86 3.77
300 301 1.485066 AGTGAAACGAGTCAGGTTGGT 59.515 47.619 0.00 0.00 45.86 3.67
301 302 1.865340 GTGAAACGAGTCAGGTTGGTC 59.135 52.381 0.00 0.00 0.00 4.02
302 303 1.137513 GAAACGAGTCAGGTTGGTCG 58.862 55.000 0.00 0.00 38.40 4.79
303 304 0.249741 AAACGAGTCAGGTTGGTCGG 60.250 55.000 0.00 0.00 36.74 4.79
304 305 1.111116 AACGAGTCAGGTTGGTCGGA 61.111 55.000 0.00 0.00 36.74 4.55
305 306 0.898789 ACGAGTCAGGTTGGTCGGAT 60.899 55.000 0.00 0.00 36.74 4.18
306 307 1.100510 CGAGTCAGGTTGGTCGGATA 58.899 55.000 0.00 0.00 0.00 2.59
307 308 1.065701 CGAGTCAGGTTGGTCGGATAG 59.934 57.143 0.00 0.00 0.00 2.08
308 309 2.100989 GAGTCAGGTTGGTCGGATAGT 58.899 52.381 0.00 0.00 0.00 2.12
309 310 2.496470 GAGTCAGGTTGGTCGGATAGTT 59.504 50.000 0.00 0.00 0.00 2.24
310 311 2.233922 AGTCAGGTTGGTCGGATAGTTG 59.766 50.000 0.00 0.00 0.00 3.16
311 312 2.232941 GTCAGGTTGGTCGGATAGTTGA 59.767 50.000 0.00 0.00 0.00 3.18
312 313 2.901192 TCAGGTTGGTCGGATAGTTGAA 59.099 45.455 0.00 0.00 0.00 2.69
313 314 3.000727 CAGGTTGGTCGGATAGTTGAAC 58.999 50.000 0.00 0.00 0.00 3.18
314 315 2.027469 AGGTTGGTCGGATAGTTGAACC 60.027 50.000 0.00 0.00 33.06 3.62
315 316 2.027469 GGTTGGTCGGATAGTTGAACCT 60.027 50.000 0.00 0.00 0.00 3.50
316 317 3.259902 GTTGGTCGGATAGTTGAACCTC 58.740 50.000 0.00 0.00 0.00 3.85
317 318 1.829222 TGGTCGGATAGTTGAACCTCC 59.171 52.381 4.84 4.84 0.00 4.30
318 319 1.829222 GGTCGGATAGTTGAACCTCCA 59.171 52.381 13.07 0.97 0.00 3.86
319 320 2.434702 GGTCGGATAGTTGAACCTCCAT 59.565 50.000 13.07 0.00 0.00 3.41
320 321 3.492829 GGTCGGATAGTTGAACCTCCATC 60.493 52.174 13.07 6.45 0.00 3.51
321 322 3.132289 GTCGGATAGTTGAACCTCCATCA 59.868 47.826 13.07 0.00 0.00 3.07
322 323 3.772572 TCGGATAGTTGAACCTCCATCAA 59.227 43.478 13.07 0.00 34.56 2.57
327 328 2.437413 GTTGAACCTCCATCAACCTCC 58.563 52.381 7.92 0.00 46.94 4.30
328 329 0.613260 TGAACCTCCATCAACCTCCG 59.387 55.000 0.00 0.00 0.00 4.63
329 330 0.613777 GAACCTCCATCAACCTCCGT 59.386 55.000 0.00 0.00 0.00 4.69
330 331 1.829222 GAACCTCCATCAACCTCCGTA 59.171 52.381 0.00 0.00 0.00 4.02
331 332 1.192428 ACCTCCATCAACCTCCGTAC 58.808 55.000 0.00 0.00 0.00 3.67
332 333 1.191535 CCTCCATCAACCTCCGTACA 58.808 55.000 0.00 0.00 0.00 2.90
333 334 1.553248 CCTCCATCAACCTCCGTACAA 59.447 52.381 0.00 0.00 0.00 2.41
334 335 2.027561 CCTCCATCAACCTCCGTACAAA 60.028 50.000 0.00 0.00 0.00 2.83
335 336 3.262420 CTCCATCAACCTCCGTACAAAG 58.738 50.000 0.00 0.00 0.00 2.77
336 337 2.635915 TCCATCAACCTCCGTACAAAGT 59.364 45.455 0.00 0.00 0.00 2.66
337 338 2.742053 CCATCAACCTCCGTACAAAGTG 59.258 50.000 0.00 0.00 0.00 3.16
338 339 1.873698 TCAACCTCCGTACAAAGTGC 58.126 50.000 0.00 0.00 0.00 4.40
339 340 1.414919 TCAACCTCCGTACAAAGTGCT 59.585 47.619 0.00 0.00 0.00 4.40
340 341 2.158871 TCAACCTCCGTACAAAGTGCTT 60.159 45.455 0.00 0.00 0.00 3.91
341 342 2.165319 ACCTCCGTACAAAGTGCTTC 57.835 50.000 0.00 0.00 0.00 3.86
342 343 1.270678 ACCTCCGTACAAAGTGCTTCC 60.271 52.381 0.00 0.00 0.00 3.46
343 344 1.270625 CCTCCGTACAAAGTGCTTCCA 60.271 52.381 0.00 0.00 0.00 3.53
344 345 2.069273 CTCCGTACAAAGTGCTTCCAG 58.931 52.381 0.00 0.00 0.00 3.86
345 346 1.156736 CCGTACAAAGTGCTTCCAGG 58.843 55.000 0.00 0.00 0.00 4.45
346 347 1.270625 CCGTACAAAGTGCTTCCAGGA 60.271 52.381 0.00 0.00 0.00 3.86
347 348 2.069273 CGTACAAAGTGCTTCCAGGAG 58.931 52.381 0.00 0.00 0.00 3.69
348 349 2.548067 CGTACAAAGTGCTTCCAGGAGT 60.548 50.000 0.00 0.00 0.00 3.85
349 350 2.736670 ACAAAGTGCTTCCAGGAGTT 57.263 45.000 0.00 0.00 30.02 3.01
350 351 2.576615 ACAAAGTGCTTCCAGGAGTTC 58.423 47.619 0.00 0.00 27.23 3.01
351 352 1.882623 CAAAGTGCTTCCAGGAGTTCC 59.117 52.381 0.00 0.00 27.23 3.62
352 353 1.140312 AAGTGCTTCCAGGAGTTCCA 58.860 50.000 0.28 0.00 38.89 3.53
353 354 0.689623 AGTGCTTCCAGGAGTTCCAG 59.310 55.000 0.28 0.00 38.89 3.86
354 355 0.957888 GTGCTTCCAGGAGTTCCAGC 60.958 60.000 3.38 3.38 38.89 4.85
355 356 1.743252 GCTTCCAGGAGTTCCAGCG 60.743 63.158 0.28 0.00 38.89 5.18
356 357 1.743252 CTTCCAGGAGTTCCAGCGC 60.743 63.158 0.00 0.00 38.89 5.92
357 358 2.177594 CTTCCAGGAGTTCCAGCGCT 62.178 60.000 2.64 2.64 38.89 5.92
358 359 2.125350 CCAGGAGTTCCAGCGCTC 60.125 66.667 7.13 0.00 38.89 5.03
361 362 4.475135 GGAGTTCCAGCGCTCCCC 62.475 72.222 7.13 0.00 44.06 4.81
362 363 3.706373 GAGTTCCAGCGCTCCCCA 61.706 66.667 7.13 0.00 0.00 4.96
363 364 3.249189 AGTTCCAGCGCTCCCCAA 61.249 61.111 7.13 0.00 0.00 4.12
364 365 3.056328 GTTCCAGCGCTCCCCAAC 61.056 66.667 7.13 4.10 0.00 3.77
365 366 3.249189 TTCCAGCGCTCCCCAACT 61.249 61.111 7.13 0.00 0.00 3.16
366 367 1.916273 TTCCAGCGCTCCCCAACTA 60.916 57.895 7.13 0.00 0.00 2.24
367 368 1.485294 TTCCAGCGCTCCCCAACTAA 61.485 55.000 7.13 0.00 0.00 2.24
368 369 1.224592 CCAGCGCTCCCCAACTAAT 59.775 57.895 7.13 0.00 0.00 1.73
369 370 1.097547 CCAGCGCTCCCCAACTAATG 61.098 60.000 7.13 0.00 0.00 1.90
370 371 0.107703 CAGCGCTCCCCAACTAATGA 60.108 55.000 7.13 0.00 0.00 2.57
371 372 0.839946 AGCGCTCCCCAACTAATGAT 59.160 50.000 2.64 0.00 0.00 2.45
372 373 1.202698 AGCGCTCCCCAACTAATGATC 60.203 52.381 2.64 0.00 0.00 2.92
373 374 1.502231 CGCTCCCCAACTAATGATCG 58.498 55.000 0.00 0.00 0.00 3.69
374 375 1.230324 GCTCCCCAACTAATGATCGC 58.770 55.000 0.00 0.00 0.00 4.58
375 376 1.884235 CTCCCCAACTAATGATCGCC 58.116 55.000 0.00 0.00 0.00 5.54
376 377 1.417890 CTCCCCAACTAATGATCGCCT 59.582 52.381 0.00 0.00 0.00 5.52
377 378 2.632996 CTCCCCAACTAATGATCGCCTA 59.367 50.000 0.00 0.00 0.00 3.93
378 379 3.042682 TCCCCAACTAATGATCGCCTAA 58.957 45.455 0.00 0.00 0.00 2.69
379 380 3.456644 TCCCCAACTAATGATCGCCTAAA 59.543 43.478 0.00 0.00 0.00 1.85
380 381 3.564225 CCCCAACTAATGATCGCCTAAAC 59.436 47.826 0.00 0.00 0.00 2.01
381 382 4.451900 CCCAACTAATGATCGCCTAAACT 58.548 43.478 0.00 0.00 0.00 2.66
382 383 4.273480 CCCAACTAATGATCGCCTAAACTG 59.727 45.833 0.00 0.00 0.00 3.16
383 384 5.116180 CCAACTAATGATCGCCTAAACTGA 58.884 41.667 0.00 0.00 0.00 3.41
384 385 5.584649 CCAACTAATGATCGCCTAAACTGAA 59.415 40.000 0.00 0.00 0.00 3.02
385 386 6.260936 CCAACTAATGATCGCCTAAACTGAAT 59.739 38.462 0.00 0.00 0.00 2.57
386 387 7.441157 CCAACTAATGATCGCCTAAACTGAATA 59.559 37.037 0.00 0.00 0.00 1.75
387 388 8.993121 CAACTAATGATCGCCTAAACTGAATAT 58.007 33.333 0.00 0.00 0.00 1.28
388 389 9.561069 AACTAATGATCGCCTAAACTGAATATT 57.439 29.630 0.00 0.00 0.00 1.28
389 390 9.561069 ACTAATGATCGCCTAAACTGAATATTT 57.439 29.630 0.00 0.00 0.00 1.40
393 394 8.378172 TGATCGCCTAAACTGAATATTTAAGG 57.622 34.615 0.00 0.00 0.00 2.69
394 395 7.444183 TGATCGCCTAAACTGAATATTTAAGGG 59.556 37.037 0.00 0.00 0.00 3.95
395 396 6.655930 TCGCCTAAACTGAATATTTAAGGGT 58.344 36.000 0.00 0.00 0.00 4.34
396 397 7.794041 TCGCCTAAACTGAATATTTAAGGGTA 58.206 34.615 0.00 0.00 0.00 3.69
397 398 7.712205 TCGCCTAAACTGAATATTTAAGGGTAC 59.288 37.037 0.00 0.00 0.00 3.34
484 488 8.141909 TGTTATAGATAGAAAACATGACCCTCG 58.858 37.037 0.00 0.00 0.00 4.63
695 789 9.852091 GAGCTTATCTTTCTTCATTTTCAATGT 57.148 29.630 0.00 0.00 0.00 2.71
738 833 7.120432 GGCAAATTGAAGAGTCACTTTCTATCT 59.880 37.037 0.00 0.00 35.18 1.98
775 871 0.613260 TTGCGGCATACTCCTGAGTT 59.387 50.000 2.28 0.00 42.54 3.01
823 930 3.689649 GCACCTATGTTGAAACCAGTAGG 59.310 47.826 11.68 11.68 42.21 3.18
935 1151 0.176680 AGTGCTTCTACATGCGAGGG 59.823 55.000 0.00 0.00 0.00 4.30
966 1182 4.071423 TGTGTCTAATTGCTTGCTTGCTA 58.929 39.130 3.47 0.00 0.00 3.49
991 1209 8.510243 ACAGAATACATTTCATGAACATAGCA 57.490 30.769 7.89 0.00 0.00 3.49
1044 1266 6.408858 AACATTCATCTCACACATTACGAC 57.591 37.500 0.00 0.00 0.00 4.34
1077 1299 3.703052 AGCTAAGGCCAAAATCTCCAATG 59.297 43.478 5.01 0.00 39.73 2.82
1085 1307 3.450578 CAAAATCTCCAATGGCAATCCG 58.549 45.455 0.00 0.00 34.14 4.18
1128 1382 2.025981 AGCATCCATGGCTAAGTCACAA 60.026 45.455 6.96 0.00 40.47 3.33
1129 1383 2.954318 GCATCCATGGCTAAGTCACAAT 59.046 45.455 6.96 0.00 0.00 2.71
1224 1478 5.342433 GGCATGTCGAATGATGAATTCAAA 58.658 37.500 13.09 4.38 44.34 2.69
1268 1522 4.993705 TGGAAAACCCAATAGACAGTCT 57.006 40.909 8.50 8.50 43.29 3.24
1400 1655 2.354902 GGCACTGCCTGGAAATTGT 58.645 52.632 13.28 0.00 46.69 2.71
1464 1726 4.512944 CACTATCCATGAATGTGTAGGTGC 59.487 45.833 0.00 0.00 0.00 5.01
1537 1827 9.403583 AGGAACACTTGAAAGTTCTTATTGTTA 57.596 29.630 9.18 0.00 42.76 2.41
1557 1848 6.655062 TGTTATTGTCTGATTTGAACACGTC 58.345 36.000 0.00 0.00 0.00 4.34
1722 2024 7.572759 TGAACAAGTAAAAGTCGATCACAATC 58.427 34.615 0.00 0.00 0.00 2.67
1734 2036 5.123820 GTCGATCACAATCTTTTCCCAATCA 59.876 40.000 0.00 0.00 0.00 2.57
1780 2387 3.785486 TCATCAACTATCAAGGCGACTG 58.215 45.455 0.00 0.00 42.68 3.51
1784 2391 3.704566 TCAACTATCAAGGCGACTGGTAT 59.295 43.478 0.00 0.00 42.68 2.73
1838 2981 4.394920 GGTATCCACAATAACATATGGCCG 59.605 45.833 7.80 0.00 31.87 6.13
1862 3005 4.188462 CTGCACTGAAATATACGGTTGGA 58.812 43.478 0.00 0.00 0.00 3.53
1897 3040 6.072008 CCATGGTCACTACATTGATCAAAACA 60.072 38.462 13.09 3.08 40.05 2.83
1944 3087 7.204604 TCCCTTTTCAAGTTCGAAATTTTACC 58.795 34.615 8.33 0.00 34.94 2.85
1946 3089 8.354426 CCCTTTTCAAGTTCGAAATTTTACCTA 58.646 33.333 8.33 0.00 34.94 3.08
1950 3093 8.736751 TTCAAGTTCGAAATTTTACCTATTGC 57.263 30.769 8.33 0.00 0.00 3.56
1970 3113 4.394729 TGCCCTCTTGTCGATTTTAGTTT 58.605 39.130 0.00 0.00 0.00 2.66
1989 3132 4.966168 AGTTTGTAATTTTGGTCCCCTTGT 59.034 37.500 0.00 0.00 0.00 3.16
1997 3140 0.404040 TGGTCCCCTTGTCATGGAAC 59.596 55.000 6.33 0.97 36.37 3.62
1999 3142 1.075536 GGTCCCCTTGTCATGGAACTT 59.924 52.381 6.33 0.00 32.93 2.66
2001 3144 0.890683 CCCCTTGTCATGGAACTTGC 59.109 55.000 6.33 0.00 0.00 4.01
2005 3148 3.553508 CCCTTGTCATGGAACTTGCTTTG 60.554 47.826 6.33 0.00 0.00 2.77
2036 3179 6.205853 TCTCGCAACCTAATACATGTTTTGTT 59.794 34.615 2.30 1.30 39.87 2.83
2079 3223 0.311790 GACCTGCACACCACATGTTG 59.688 55.000 0.00 0.00 40.64 3.33
2090 3234 3.373130 CACCACATGTTGCATCACTAGAG 59.627 47.826 0.00 0.00 0.00 2.43
2131 3275 4.850193 CCAGCAAGTGGGTCCATT 57.150 55.556 0.00 0.00 43.63 3.16
2139 3283 2.692557 CAAGTGGGTCCATTTGTGACAA 59.307 45.455 14.62 0.00 38.36 3.18
2153 3297 6.951062 TTTGTGACAATGTTAATGGTCTCA 57.049 33.333 0.00 0.00 38.09 3.27
2259 3403 7.819644 TGTTCCTGTCAGTCATATTTGAAATG 58.180 34.615 0.00 0.00 32.48 2.32
2281 3425 6.095432 TGCCAGTGTGCTAATTAATTTGTT 57.905 33.333 5.91 0.00 0.00 2.83
2282 3426 7.220741 TGCCAGTGTGCTAATTAATTTGTTA 57.779 32.000 5.91 0.00 0.00 2.41
2283 3427 7.087639 TGCCAGTGTGCTAATTAATTTGTTAC 58.912 34.615 5.91 8.63 0.00 2.50
2284 3428 7.087639 GCCAGTGTGCTAATTAATTTGTTACA 58.912 34.615 5.91 10.82 0.00 2.41
2285 3429 7.759433 GCCAGTGTGCTAATTAATTTGTTACAT 59.241 33.333 5.91 3.42 0.00 2.29
2286 3430 9.638239 CCAGTGTGCTAATTAATTTGTTACATT 57.362 29.630 5.91 8.22 0.00 2.71
2299 3443 8.964420 AATTTGTTACATTCTTATGTTGACGG 57.036 30.769 0.00 0.00 42.29 4.79
2300 3444 5.539582 TGTTACATTCTTATGTTGACGGC 57.460 39.130 0.00 0.00 42.29 5.68
2301 3445 4.393680 TGTTACATTCTTATGTTGACGGCC 59.606 41.667 0.00 0.00 42.29 6.13
2302 3446 3.066291 ACATTCTTATGTTGACGGCCA 57.934 42.857 2.24 0.00 42.29 5.36
2318 3481 2.378634 CCATGGACCCCCTCCTCAC 61.379 68.421 5.56 0.00 40.26 3.51
2320 3483 0.990282 CATGGACCCCCTCCTCACAT 60.990 60.000 0.00 0.00 40.26 3.21
2343 3506 7.877097 ACATATGATGGATAGAAGCTTCAAGAC 59.123 37.037 27.57 15.16 33.60 3.01
2347 3510 4.686972 TGGATAGAAGCTTCAAGACATCG 58.313 43.478 27.57 0.00 0.00 3.84
2351 3514 1.806542 GAAGCTTCAAGACATCGCCAA 59.193 47.619 21.67 0.00 0.00 4.52
2382 3545 4.261801 ACACATCTAAAATTAGCCTGCGT 58.738 39.130 0.00 0.00 0.00 5.24
2468 3632 5.681105 CCACAAAACTTCATTGTCACGTTAG 59.319 40.000 0.00 0.00 38.90 2.34
2504 3669 1.623542 ATGTTCCCTACGTCTGCCCC 61.624 60.000 0.00 0.00 0.00 5.80
2506 3672 1.536907 TTCCCTACGTCTGCCCCAA 60.537 57.895 0.00 0.00 0.00 4.12
2516 3682 2.158813 CGTCTGCCCCAATAGGTTATGT 60.159 50.000 0.00 0.00 0.00 2.29
2606 3941 4.797471 TCAGAAAGGTTCATTTTCATGCG 58.203 39.130 0.00 0.00 37.08 4.73
2608 3943 4.855388 CAGAAAGGTTCATTTTCATGCGAG 59.145 41.667 0.00 0.00 37.08 5.03
2676 4011 1.273267 ACTGAGTGCCCTCCATGACTA 60.273 52.381 0.00 0.00 36.86 2.59
2684 4019 3.718434 TGCCCTCCATGACTATTCATCTT 59.282 43.478 0.00 0.00 40.79 2.40
2765 4102 3.513912 TGGAGTGTGGATGTACTAGTTGG 59.486 47.826 0.00 0.00 0.00 3.77
2865 4261 9.843334 GTTCCATTCAAACCGTAAATGTTATAA 57.157 29.630 0.00 0.00 0.00 0.98
2919 4315 7.870027 TCTACACTAAAGTAGGAGGTAGATGT 58.130 38.462 0.00 0.00 41.39 3.06
2923 4319 4.985538 AAAGTAGGAGGTAGATGTCACG 57.014 45.455 0.00 0.00 0.00 4.35
2939 4336 4.631131 TGTCACGTCCATTGGATATCATC 58.369 43.478 9.01 0.00 32.73 2.92
2940 4337 4.100808 TGTCACGTCCATTGGATATCATCA 59.899 41.667 9.01 2.51 32.73 3.07
2946 4343 6.267699 ACGTCCATTGGATATCATCAAGTCTA 59.732 38.462 9.01 0.00 32.73 2.59
2949 4346 9.512588 GTCCATTGGATATCATCAAGTCTAAAT 57.487 33.333 9.01 0.00 32.73 1.40
2971 4369 8.690203 AAATTTTAATTGAGGAAAAGTTGGGG 57.310 30.769 0.00 0.00 33.13 4.96
2977 4375 3.028130 TGAGGAAAAGTTGGGGTCAAAC 58.972 45.455 0.00 0.00 34.28 2.93
2993 4391 2.301583 TCAAACCAGTCGATGATGTCCA 59.698 45.455 0.00 0.00 0.00 4.02
3002 4400 2.356069 TCGATGATGTCCAAGTCTCTCG 59.644 50.000 0.00 0.00 0.00 4.04
3014 4412 3.539431 AGTCTCTCGACAAAGTACACG 57.461 47.619 0.00 0.00 42.73 4.49
3067 4472 6.041182 ACACTGCATATATACTAAACCACGGA 59.959 38.462 0.00 0.00 0.00 4.69
3098 4503 6.834168 AGTTTAACCCATGAGTTAATGGTG 57.166 37.500 12.66 0.00 44.93 4.17
3107 4512 5.184864 CCATGAGTTAATGGTGGTGCTTTTA 59.815 40.000 0.00 0.00 41.98 1.52
3115 4520 2.039348 TGGTGGTGCTTTTAGGTACCTC 59.961 50.000 20.32 3.85 41.50 3.85
3129 4534 1.331138 GTACCTCGGTCGACATCTCAG 59.669 57.143 18.91 4.81 0.00 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.411806 GCGAAATTACTTTGGCGAACGA 60.412 45.455 0.00 0.00 36.55 3.85
2 3 1.902504 GCGAAATTACTTTGGCGAACG 59.097 47.619 0.00 0.00 36.55 3.95
7 8 2.223044 CCTCTCGCGAAATTACTTTGGC 60.223 50.000 11.33 2.96 41.20 4.52
8 9 2.351726 CCCTCTCGCGAAATTACTTTGG 59.648 50.000 11.33 1.96 0.00 3.28
9 10 2.223044 GCCCTCTCGCGAAATTACTTTG 60.223 50.000 11.33 0.00 0.00 2.77
10 11 2.007608 GCCCTCTCGCGAAATTACTTT 58.992 47.619 11.33 0.00 0.00 2.66
11 12 1.066430 TGCCCTCTCGCGAAATTACTT 60.066 47.619 11.33 0.00 0.00 2.24
12 13 0.535335 TGCCCTCTCGCGAAATTACT 59.465 50.000 11.33 0.00 0.00 2.24
13 14 1.365699 TTGCCCTCTCGCGAAATTAC 58.634 50.000 11.33 0.19 0.00 1.89
14 15 2.158957 AGATTGCCCTCTCGCGAAATTA 60.159 45.455 11.33 0.00 0.00 1.40
15 16 1.017387 GATTGCCCTCTCGCGAAATT 58.983 50.000 11.33 0.00 0.00 1.82
16 17 0.179000 AGATTGCCCTCTCGCGAAAT 59.821 50.000 11.33 5.61 0.00 2.17
17 18 0.821517 TAGATTGCCCTCTCGCGAAA 59.178 50.000 11.33 0.00 0.00 3.46
18 19 1.040646 ATAGATTGCCCTCTCGCGAA 58.959 50.000 11.33 0.02 0.00 4.70
19 20 0.315251 CATAGATTGCCCTCTCGCGA 59.685 55.000 9.26 9.26 0.00 5.87
20 21 0.315251 TCATAGATTGCCCTCTCGCG 59.685 55.000 0.00 0.00 0.00 5.87
21 22 2.533266 TTCATAGATTGCCCTCTCGC 57.467 50.000 0.00 0.00 0.00 5.03
22 23 4.753233 CCTATTCATAGATTGCCCTCTCG 58.247 47.826 0.00 0.00 32.05 4.04
23 24 4.512484 GCCTATTCATAGATTGCCCTCTC 58.488 47.826 0.00 0.00 32.05 3.20
24 25 3.055530 CGCCTATTCATAGATTGCCCTCT 60.056 47.826 0.00 0.00 32.05 3.69
25 26 3.265791 CGCCTATTCATAGATTGCCCTC 58.734 50.000 0.00 0.00 32.05 4.30
26 27 2.639839 ACGCCTATTCATAGATTGCCCT 59.360 45.455 0.00 0.00 32.05 5.19
27 28 3.059352 ACGCCTATTCATAGATTGCCC 57.941 47.619 0.00 0.00 32.05 5.36
28 29 3.815401 ACAACGCCTATTCATAGATTGCC 59.185 43.478 0.00 0.00 32.05 4.52
29 30 6.727824 ATACAACGCCTATTCATAGATTGC 57.272 37.500 0.00 0.00 32.05 3.56
30 31 8.087982 ACAATACAACGCCTATTCATAGATTG 57.912 34.615 0.00 0.00 32.05 2.67
31 32 8.677148 AACAATACAACGCCTATTCATAGATT 57.323 30.769 0.00 0.00 32.05 2.40
32 33 8.677148 AAACAATACAACGCCTATTCATAGAT 57.323 30.769 0.00 0.00 32.05 1.98
33 34 7.042992 CGAAACAATACAACGCCTATTCATAGA 60.043 37.037 0.00 0.00 32.05 1.98
34 35 7.063456 CGAAACAATACAACGCCTATTCATAG 58.937 38.462 0.00 0.00 0.00 2.23
35 36 6.535865 ACGAAACAATACAACGCCTATTCATA 59.464 34.615 0.00 0.00 0.00 2.15
36 37 5.353123 ACGAAACAATACAACGCCTATTCAT 59.647 36.000 0.00 0.00 0.00 2.57
37 38 4.691685 ACGAAACAATACAACGCCTATTCA 59.308 37.500 0.00 0.00 0.00 2.57
38 39 5.019498 CACGAAACAATACAACGCCTATTC 58.981 41.667 0.00 0.00 0.00 1.75
39 40 4.691685 TCACGAAACAATACAACGCCTATT 59.308 37.500 0.00 0.00 0.00 1.73
40 41 4.247258 TCACGAAACAATACAACGCCTAT 58.753 39.130 0.00 0.00 0.00 2.57
41 42 3.651206 TCACGAAACAATACAACGCCTA 58.349 40.909 0.00 0.00 0.00 3.93
42 43 2.485903 TCACGAAACAATACAACGCCT 58.514 42.857 0.00 0.00 0.00 5.52
43 44 2.953640 TCACGAAACAATACAACGCC 57.046 45.000 0.00 0.00 0.00 5.68
44 45 3.838550 GTCATCACGAAACAATACAACGC 59.161 43.478 0.00 0.00 0.00 4.84
45 46 4.084276 TGGTCATCACGAAACAATACAACG 60.084 41.667 0.00 0.00 0.00 4.10
46 47 5.351233 TGGTCATCACGAAACAATACAAC 57.649 39.130 0.00 0.00 0.00 3.32
47 48 7.173390 TGTTATGGTCATCACGAAACAATACAA 59.827 33.333 0.00 0.00 0.00 2.41
48 49 6.651225 TGTTATGGTCATCACGAAACAATACA 59.349 34.615 0.00 0.00 0.00 2.29
49 50 7.067532 TGTTATGGTCATCACGAAACAATAC 57.932 36.000 0.00 0.00 0.00 1.89
50 51 7.173390 TGTTGTTATGGTCATCACGAAACAATA 59.827 33.333 10.32 6.82 37.74 1.90
51 52 6.016693 TGTTGTTATGGTCATCACGAAACAAT 60.017 34.615 10.32 0.00 37.74 2.71
52 53 5.297029 TGTTGTTATGGTCATCACGAAACAA 59.703 36.000 0.00 5.41 35.41 2.83
53 54 4.816925 TGTTGTTATGGTCATCACGAAACA 59.183 37.500 0.00 0.00 0.00 2.83
54 55 5.351233 TGTTGTTATGGTCATCACGAAAC 57.649 39.130 0.00 0.00 0.00 2.78
55 56 5.297029 TGTTGTTGTTATGGTCATCACGAAA 59.703 36.000 0.00 0.00 0.00 3.46
56 57 4.816925 TGTTGTTGTTATGGTCATCACGAA 59.183 37.500 0.00 0.00 0.00 3.85
57 58 4.381411 TGTTGTTGTTATGGTCATCACGA 58.619 39.130 0.00 0.00 0.00 4.35
58 59 4.740741 TGTTGTTGTTATGGTCATCACG 57.259 40.909 0.00 0.00 0.00 4.35
59 60 5.106712 ACGATGTTGTTGTTATGGTCATCAC 60.107 40.000 0.00 0.00 33.03 3.06
60 61 5.000591 ACGATGTTGTTGTTATGGTCATCA 58.999 37.500 0.00 0.00 33.03 3.07
61 62 5.323900 CACGATGTTGTTGTTATGGTCATC 58.676 41.667 0.00 0.00 0.00 2.92
62 63 4.379394 GCACGATGTTGTTGTTATGGTCAT 60.379 41.667 0.00 0.00 0.00 3.06
63 64 3.058570 GCACGATGTTGTTGTTATGGTCA 60.059 43.478 0.00 0.00 0.00 4.02
64 65 3.058570 TGCACGATGTTGTTGTTATGGTC 60.059 43.478 0.00 0.00 0.00 4.02
65 66 2.881513 TGCACGATGTTGTTGTTATGGT 59.118 40.909 0.00 0.00 0.00 3.55
66 67 3.058293 AGTGCACGATGTTGTTGTTATGG 60.058 43.478 12.01 0.00 0.00 2.74
67 68 3.907788 CAGTGCACGATGTTGTTGTTATG 59.092 43.478 12.01 0.00 0.00 1.90
68 69 3.609175 GCAGTGCACGATGTTGTTGTTAT 60.609 43.478 11.09 0.00 0.00 1.89
69 70 2.286713 GCAGTGCACGATGTTGTTGTTA 60.287 45.455 11.09 0.00 0.00 2.41
70 71 1.533756 GCAGTGCACGATGTTGTTGTT 60.534 47.619 11.09 0.00 0.00 2.83
71 72 0.029300 GCAGTGCACGATGTTGTTGT 59.971 50.000 11.09 0.00 0.00 3.32
72 73 0.661187 GGCAGTGCACGATGTTGTTG 60.661 55.000 18.61 2.43 0.00 3.33
73 74 0.819259 AGGCAGTGCACGATGTTGTT 60.819 50.000 18.61 0.00 0.00 2.83
74 75 0.034756 TAGGCAGTGCACGATGTTGT 59.965 50.000 18.61 0.00 0.00 3.32
75 76 0.443869 GTAGGCAGTGCACGATGTTG 59.556 55.000 18.61 4.83 0.00 3.33
76 77 0.673644 GGTAGGCAGTGCACGATGTT 60.674 55.000 18.61 0.14 0.00 2.71
77 78 1.079127 GGTAGGCAGTGCACGATGT 60.079 57.895 18.61 0.39 0.00 3.06
78 79 1.815421 GGGTAGGCAGTGCACGATG 60.815 63.158 18.61 6.45 0.00 3.84
79 80 1.836999 TTGGGTAGGCAGTGCACGAT 61.837 55.000 18.61 1.92 0.00 3.73
80 81 2.512355 TTGGGTAGGCAGTGCACGA 61.512 57.895 18.61 0.00 0.00 4.35
81 82 2.031919 TTGGGTAGGCAGTGCACG 59.968 61.111 18.61 7.77 0.00 5.34
82 83 2.325082 CGTTGGGTAGGCAGTGCAC 61.325 63.158 18.61 9.40 0.00 4.57
83 84 2.031919 CGTTGGGTAGGCAGTGCA 59.968 61.111 18.61 0.00 0.00 4.57
84 85 1.599797 AACGTTGGGTAGGCAGTGC 60.600 57.895 6.55 6.55 0.00 4.40
85 86 1.852067 GCAACGTTGGGTAGGCAGTG 61.852 60.000 28.33 0.49 0.00 3.66
86 87 1.599797 GCAACGTTGGGTAGGCAGT 60.600 57.895 28.33 0.00 0.00 4.40
87 88 0.889186 AAGCAACGTTGGGTAGGCAG 60.889 55.000 28.33 1.15 32.99 4.85
88 89 0.466555 AAAGCAACGTTGGGTAGGCA 60.467 50.000 28.33 0.00 32.99 4.75
89 90 1.467342 CTAAAGCAACGTTGGGTAGGC 59.533 52.381 28.33 13.74 0.00 3.93
90 91 2.774687 ACTAAAGCAACGTTGGGTAGG 58.225 47.619 28.33 3.46 0.00 3.18
91 92 6.490566 AATTACTAAAGCAACGTTGGGTAG 57.509 37.500 28.33 12.51 0.00 3.18
92 93 6.880942 AAATTACTAAAGCAACGTTGGGTA 57.119 33.333 28.33 5.53 0.00 3.69
93 94 5.777850 AAATTACTAAAGCAACGTTGGGT 57.222 34.783 28.33 12.75 0.00 4.51
94 95 7.758495 AGATAAATTACTAAAGCAACGTTGGG 58.242 34.615 28.33 5.81 0.00 4.12
95 96 9.620660 AAAGATAAATTACTAAAGCAACGTTGG 57.379 29.630 28.33 14.33 0.00 3.77
97 98 9.620660 CCAAAGATAAATTACTAAAGCAACGTT 57.379 29.630 0.00 0.00 0.00 3.99
98 99 8.789762 ACCAAAGATAAATTACTAAAGCAACGT 58.210 29.630 0.00 0.00 0.00 3.99
99 100 9.620660 AACCAAAGATAAATTACTAAAGCAACG 57.379 29.630 0.00 0.00 0.00 4.10
117 118 8.549952 ACACAAGCAAGTGATCTTAACCAAAGA 61.550 37.037 14.45 0.00 44.00 2.52
118 119 5.916883 CACAAGCAAGTGATCTTAACCAAAG 59.083 40.000 2.69 0.00 42.05 2.77
119 120 5.359576 ACACAAGCAAGTGATCTTAACCAAA 59.640 36.000 14.45 0.00 42.05 3.28
120 121 4.887071 ACACAAGCAAGTGATCTTAACCAA 59.113 37.500 14.45 0.00 42.05 3.67
121 122 4.460263 ACACAAGCAAGTGATCTTAACCA 58.540 39.130 14.45 0.00 42.05 3.67
122 123 5.468746 TGTACACAAGCAAGTGATCTTAACC 59.531 40.000 14.45 0.00 42.05 2.85
123 124 6.539649 TGTACACAAGCAAGTGATCTTAAC 57.460 37.500 14.45 4.59 42.05 2.01
124 125 7.414436 GTTTGTACACAAGCAAGTGATCTTAA 58.586 34.615 14.45 1.63 42.05 1.85
125 126 6.017440 GGTTTGTACACAAGCAAGTGATCTTA 60.017 38.462 14.45 0.00 42.05 2.10
126 127 5.221048 GGTTTGTACACAAGCAAGTGATCTT 60.221 40.000 14.45 0.00 42.05 2.40
127 128 4.275936 GGTTTGTACACAAGCAAGTGATCT 59.724 41.667 14.45 0.00 42.05 2.75
128 129 4.036262 TGGTTTGTACACAAGCAAGTGATC 59.964 41.667 14.45 7.77 42.05 2.92
129 130 3.951037 TGGTTTGTACACAAGCAAGTGAT 59.049 39.130 14.45 3.12 42.05 3.06
130 131 3.127895 GTGGTTTGTACACAAGCAAGTGA 59.872 43.478 17.93 0.00 42.05 3.41
131 132 3.119673 TGTGGTTTGTACACAAGCAAGTG 60.120 43.478 17.93 6.96 45.05 3.16
132 133 3.085533 TGTGGTTTGTACACAAGCAAGT 58.914 40.909 17.93 0.00 45.05 3.16
133 134 3.773860 TGTGGTTTGTACACAAGCAAG 57.226 42.857 17.93 0.00 45.05 4.01
144 145 9.296400 GCGTATTAAAATATTCATGTGGTTTGT 57.704 29.630 0.00 0.00 0.00 2.83
145 146 9.295214 TGCGTATTAAAATATTCATGTGGTTTG 57.705 29.630 0.00 0.00 0.00 2.93
146 147 9.862371 TTGCGTATTAAAATATTCATGTGGTTT 57.138 25.926 0.00 0.00 0.00 3.27
147 148 9.515020 CTTGCGTATTAAAATATTCATGTGGTT 57.485 29.630 0.00 0.00 0.00 3.67
148 149 8.134895 CCTTGCGTATTAAAATATTCATGTGGT 58.865 33.333 0.00 0.00 0.00 4.16
149 150 7.594758 CCCTTGCGTATTAAAATATTCATGTGG 59.405 37.037 0.00 0.00 0.00 4.17
150 151 8.349245 TCCCTTGCGTATTAAAATATTCATGTG 58.651 33.333 0.00 0.00 0.00 3.21
151 152 8.458573 TCCCTTGCGTATTAAAATATTCATGT 57.541 30.769 0.00 0.00 0.00 3.21
152 153 9.180678 GTTCCCTTGCGTATTAAAATATTCATG 57.819 33.333 0.00 0.00 0.00 3.07
153 154 8.357402 GGTTCCCTTGCGTATTAAAATATTCAT 58.643 33.333 0.00 0.00 0.00 2.57
154 155 7.558444 AGGTTCCCTTGCGTATTAAAATATTCA 59.442 33.333 0.00 0.00 0.00 2.57
155 156 7.937649 AGGTTCCCTTGCGTATTAAAATATTC 58.062 34.615 0.00 0.00 0.00 1.75
156 157 7.891498 AGGTTCCCTTGCGTATTAAAATATT 57.109 32.000 0.00 0.00 0.00 1.28
157 158 7.891498 AAGGTTCCCTTGCGTATTAAAATAT 57.109 32.000 0.00 0.00 42.96 1.28
158 159 8.676401 GTTAAGGTTCCCTTGCGTATTAAAATA 58.324 33.333 5.78 0.00 44.44 1.40
159 160 7.395206 AGTTAAGGTTCCCTTGCGTATTAAAAT 59.605 33.333 5.78 0.00 44.44 1.82
160 161 6.716173 AGTTAAGGTTCCCTTGCGTATTAAAA 59.284 34.615 5.78 0.00 44.44 1.52
161 162 6.240145 AGTTAAGGTTCCCTTGCGTATTAAA 58.760 36.000 5.78 0.00 44.44 1.52
162 163 5.807909 AGTTAAGGTTCCCTTGCGTATTAA 58.192 37.500 5.78 0.00 44.44 1.40
163 164 5.425196 AGTTAAGGTTCCCTTGCGTATTA 57.575 39.130 5.78 0.00 44.44 0.98
164 165 4.296621 AGTTAAGGTTCCCTTGCGTATT 57.703 40.909 5.78 0.00 44.44 1.89
165 166 3.994931 AGTTAAGGTTCCCTTGCGTAT 57.005 42.857 5.78 0.00 44.44 3.06
166 167 3.775261 AAGTTAAGGTTCCCTTGCGTA 57.225 42.857 5.78 0.00 44.44 4.42
167 168 2.651382 AAGTTAAGGTTCCCTTGCGT 57.349 45.000 5.78 0.00 44.44 5.24
168 169 2.228103 GGAAAGTTAAGGTTCCCTTGCG 59.772 50.000 5.78 0.00 44.44 4.85
169 170 3.227614 TGGAAAGTTAAGGTTCCCTTGC 58.772 45.455 12.49 0.00 44.44 4.01
170 171 5.862678 TTTGGAAAGTTAAGGTTCCCTTG 57.137 39.130 12.49 0.00 44.44 3.61
171 172 7.733047 ACATATTTGGAAAGTTAAGGTTCCCTT 59.267 33.333 12.49 0.57 46.63 3.95
172 173 7.246027 ACATATTTGGAAAGTTAAGGTTCCCT 58.754 34.615 12.49 3.36 42.33 4.20
173 174 7.476540 ACATATTTGGAAAGTTAAGGTTCCC 57.523 36.000 12.49 0.00 42.33 3.97
175 176 9.931210 CGATACATATTTGGAAAGTTAAGGTTC 57.069 33.333 0.00 0.00 0.00 3.62
176 177 9.675464 TCGATACATATTTGGAAAGTTAAGGTT 57.325 29.630 0.00 0.00 0.00 3.50
177 178 9.847224 ATCGATACATATTTGGAAAGTTAAGGT 57.153 29.630 0.00 0.00 0.00 3.50
182 183 8.840321 CCAAGATCGATACATATTTGGAAAGTT 58.160 33.333 0.00 0.00 36.56 2.66
183 184 7.445402 CCCAAGATCGATACATATTTGGAAAGT 59.555 37.037 16.40 0.00 36.56 2.66
184 185 7.661437 TCCCAAGATCGATACATATTTGGAAAG 59.339 37.037 16.40 6.40 36.56 2.62
185 186 7.513856 TCCCAAGATCGATACATATTTGGAAA 58.486 34.615 16.40 7.16 36.56 3.13
186 187 7.073457 TCCCAAGATCGATACATATTTGGAA 57.927 36.000 16.40 1.58 36.56 3.53
187 188 6.680148 TCCCAAGATCGATACATATTTGGA 57.320 37.500 16.40 8.26 36.56 3.53
188 189 7.148188 CCAATCCCAAGATCGATACATATTTGG 60.148 40.741 0.00 6.16 34.75 3.28
189 190 7.148188 CCCAATCCCAAGATCGATACATATTTG 60.148 40.741 0.00 0.00 0.00 2.32
190 191 6.886459 CCCAATCCCAAGATCGATACATATTT 59.114 38.462 0.00 0.00 0.00 1.40
191 192 6.418101 CCCAATCCCAAGATCGATACATATT 58.582 40.000 0.00 0.00 0.00 1.28
192 193 5.630069 GCCCAATCCCAAGATCGATACATAT 60.630 44.000 0.00 0.00 0.00 1.78
193 194 4.323485 GCCCAATCCCAAGATCGATACATA 60.323 45.833 0.00 0.00 0.00 2.29
194 195 3.560025 GCCCAATCCCAAGATCGATACAT 60.560 47.826 0.00 0.00 0.00 2.29
195 196 2.224523 GCCCAATCCCAAGATCGATACA 60.225 50.000 0.00 0.00 0.00 2.29
196 197 2.427506 GCCCAATCCCAAGATCGATAC 58.572 52.381 0.00 0.00 0.00 2.24
197 198 1.351017 GGCCCAATCCCAAGATCGATA 59.649 52.381 0.00 0.00 0.00 2.92
198 199 0.111253 GGCCCAATCCCAAGATCGAT 59.889 55.000 0.00 0.00 0.00 3.59
199 200 1.278302 TGGCCCAATCCCAAGATCGA 61.278 55.000 0.00 0.00 0.00 3.59
200 201 0.820891 CTGGCCCAATCCCAAGATCG 60.821 60.000 0.00 0.00 30.66 3.69
201 202 0.552848 TCTGGCCCAATCCCAAGATC 59.447 55.000 0.00 0.00 30.66 2.75
202 203 1.009997 TTCTGGCCCAATCCCAAGAT 58.990 50.000 0.00 0.00 30.66 2.40
203 204 1.009997 ATTCTGGCCCAATCCCAAGA 58.990 50.000 0.00 0.00 30.66 3.02
204 205 1.870064 AATTCTGGCCCAATCCCAAG 58.130 50.000 0.00 0.00 30.66 3.61
205 206 3.481559 TTAATTCTGGCCCAATCCCAA 57.518 42.857 0.00 0.00 30.66 4.12
206 207 3.704545 ATTAATTCTGGCCCAATCCCA 57.295 42.857 0.00 0.00 0.00 4.37
207 208 6.099701 AGTTTAATTAATTCTGGCCCAATCCC 59.900 38.462 3.39 0.00 0.00 3.85
208 209 7.124573 AGTTTAATTAATTCTGGCCCAATCC 57.875 36.000 3.39 0.00 0.00 3.01
209 210 7.781056 TGAGTTTAATTAATTCTGGCCCAATC 58.219 34.615 3.39 0.00 0.00 2.67
210 211 7.732222 TGAGTTTAATTAATTCTGGCCCAAT 57.268 32.000 3.39 0.00 0.00 3.16
211 212 7.732222 ATGAGTTTAATTAATTCTGGCCCAA 57.268 32.000 3.39 0.00 0.00 4.12
226 227 9.051679 CGGTCAAATCCATGTATATGAGTTTAA 57.948 33.333 0.25 0.00 36.36 1.52
227 228 8.208224 ACGGTCAAATCCATGTATATGAGTTTA 58.792 33.333 0.25 0.00 36.36 2.01
228 229 7.054124 ACGGTCAAATCCATGTATATGAGTTT 58.946 34.615 0.25 0.00 36.36 2.66
229 230 6.591935 ACGGTCAAATCCATGTATATGAGTT 58.408 36.000 0.25 0.00 36.36 3.01
230 231 6.174720 ACGGTCAAATCCATGTATATGAGT 57.825 37.500 0.25 0.00 36.36 3.41
231 232 8.495949 GTTTACGGTCAAATCCATGTATATGAG 58.504 37.037 0.25 0.00 36.36 2.90
232 233 7.988028 TGTTTACGGTCAAATCCATGTATATGA 59.012 33.333 0.25 0.00 36.36 2.15
233 234 8.067784 GTGTTTACGGTCAAATCCATGTATATG 58.932 37.037 0.00 0.00 0.00 1.78
234 235 7.990886 AGTGTTTACGGTCAAATCCATGTATAT 59.009 33.333 0.00 0.00 0.00 0.86
235 236 7.332557 AGTGTTTACGGTCAAATCCATGTATA 58.667 34.615 0.00 0.00 0.00 1.47
236 237 6.177610 AGTGTTTACGGTCAAATCCATGTAT 58.822 36.000 0.00 0.00 0.00 2.29
237 238 5.553123 AGTGTTTACGGTCAAATCCATGTA 58.447 37.500 0.00 0.00 0.00 2.29
238 239 4.394729 AGTGTTTACGGTCAAATCCATGT 58.605 39.130 0.00 0.00 0.00 3.21
239 240 4.142687 GGAGTGTTTACGGTCAAATCCATG 60.143 45.833 0.00 0.00 0.00 3.66
240 241 4.007659 GGAGTGTTTACGGTCAAATCCAT 58.992 43.478 0.00 0.00 0.00 3.41
241 242 3.181453 TGGAGTGTTTACGGTCAAATCCA 60.181 43.478 0.00 0.00 32.78 3.41
242 243 3.404899 TGGAGTGTTTACGGTCAAATCC 58.595 45.455 0.00 0.00 0.00 3.01
243 244 5.622770 AATGGAGTGTTTACGGTCAAATC 57.377 39.130 0.00 0.00 0.00 2.17
244 245 5.768164 AGAAATGGAGTGTTTACGGTCAAAT 59.232 36.000 0.00 0.00 0.00 2.32
245 246 5.127491 AGAAATGGAGTGTTTACGGTCAAA 58.873 37.500 0.00 0.00 0.00 2.69
246 247 4.710324 AGAAATGGAGTGTTTACGGTCAA 58.290 39.130 0.00 0.00 0.00 3.18
247 248 4.345859 AGAAATGGAGTGTTTACGGTCA 57.654 40.909 0.00 0.00 0.00 4.02
248 249 4.329256 GCTAGAAATGGAGTGTTTACGGTC 59.671 45.833 0.00 0.00 0.00 4.79
249 250 4.020485 AGCTAGAAATGGAGTGTTTACGGT 60.020 41.667 0.00 0.00 0.00 4.83
250 251 4.504858 AGCTAGAAATGGAGTGTTTACGG 58.495 43.478 0.00 0.00 0.00 4.02
251 252 6.812160 AGTTAGCTAGAAATGGAGTGTTTACG 59.188 38.462 0.00 0.00 0.00 3.18
252 253 8.549338 AAGTTAGCTAGAAATGGAGTGTTTAC 57.451 34.615 0.00 0.00 0.00 2.01
253 254 9.216117 GAAAGTTAGCTAGAAATGGAGTGTTTA 57.784 33.333 0.00 0.00 0.00 2.01
254 255 7.719633 TGAAAGTTAGCTAGAAATGGAGTGTTT 59.280 33.333 0.00 0.00 0.00 2.83
255 256 7.224297 TGAAAGTTAGCTAGAAATGGAGTGTT 58.776 34.615 0.00 0.00 0.00 3.32
256 257 6.769512 TGAAAGTTAGCTAGAAATGGAGTGT 58.230 36.000 0.00 0.00 0.00 3.55
257 258 7.301068 CTGAAAGTTAGCTAGAAATGGAGTG 57.699 40.000 0.00 0.00 0.00 3.51
275 276 3.458189 ACCTGACTCGTTTCACTGAAAG 58.542 45.455 4.36 0.00 42.29 2.62
276 277 3.536956 ACCTGACTCGTTTCACTGAAA 57.463 42.857 0.00 0.00 0.00 2.69
277 278 3.194861 CAACCTGACTCGTTTCACTGAA 58.805 45.455 0.00 0.00 0.00 3.02
278 279 2.483013 CCAACCTGACTCGTTTCACTGA 60.483 50.000 0.00 0.00 0.00 3.41
279 280 1.867233 CCAACCTGACTCGTTTCACTG 59.133 52.381 0.00 0.00 0.00 3.66
280 281 1.485066 ACCAACCTGACTCGTTTCACT 59.515 47.619 0.00 0.00 0.00 3.41
281 282 1.865340 GACCAACCTGACTCGTTTCAC 59.135 52.381 0.00 0.00 0.00 3.18
282 283 1.537348 CGACCAACCTGACTCGTTTCA 60.537 52.381 0.00 0.00 0.00 2.69
283 284 1.137513 CGACCAACCTGACTCGTTTC 58.862 55.000 0.00 0.00 0.00 2.78
284 285 0.249741 CCGACCAACCTGACTCGTTT 60.250 55.000 0.00 0.00 0.00 3.60
285 286 1.111116 TCCGACCAACCTGACTCGTT 61.111 55.000 0.00 0.00 0.00 3.85
286 287 0.898789 ATCCGACCAACCTGACTCGT 60.899 55.000 0.00 0.00 0.00 4.18
287 288 1.065701 CTATCCGACCAACCTGACTCG 59.934 57.143 0.00 0.00 0.00 4.18
288 289 2.100989 ACTATCCGACCAACCTGACTC 58.899 52.381 0.00 0.00 0.00 3.36
289 290 2.233305 ACTATCCGACCAACCTGACT 57.767 50.000 0.00 0.00 0.00 3.41
290 291 2.232941 TCAACTATCCGACCAACCTGAC 59.767 50.000 0.00 0.00 0.00 3.51
291 292 2.531771 TCAACTATCCGACCAACCTGA 58.468 47.619 0.00 0.00 0.00 3.86
292 293 3.000727 GTTCAACTATCCGACCAACCTG 58.999 50.000 0.00 0.00 0.00 4.00
293 294 2.027469 GGTTCAACTATCCGACCAACCT 60.027 50.000 0.00 0.00 30.99 3.50
294 295 2.027469 AGGTTCAACTATCCGACCAACC 60.027 50.000 0.00 0.00 32.81 3.77
295 296 3.259902 GAGGTTCAACTATCCGACCAAC 58.740 50.000 0.00 0.00 32.81 3.77
296 297 2.235402 GGAGGTTCAACTATCCGACCAA 59.765 50.000 0.00 0.00 32.81 3.67
297 298 1.829222 GGAGGTTCAACTATCCGACCA 59.171 52.381 0.00 0.00 32.81 4.02
298 299 1.829222 TGGAGGTTCAACTATCCGACC 59.171 52.381 7.55 0.00 34.39 4.79
299 300 3.132289 TGATGGAGGTTCAACTATCCGAC 59.868 47.826 7.55 5.32 34.39 4.79
300 301 3.371034 TGATGGAGGTTCAACTATCCGA 58.629 45.455 7.55 0.00 34.39 4.55
301 302 3.819564 TGATGGAGGTTCAACTATCCG 57.180 47.619 7.55 0.00 34.39 4.18
308 309 1.003118 CGGAGGTTGATGGAGGTTCAA 59.997 52.381 0.00 0.00 0.00 2.69
309 310 0.613260 CGGAGGTTGATGGAGGTTCA 59.387 55.000 0.00 0.00 0.00 3.18
310 311 0.613777 ACGGAGGTTGATGGAGGTTC 59.386 55.000 0.00 0.00 0.00 3.62
311 312 1.553704 GTACGGAGGTTGATGGAGGTT 59.446 52.381 0.00 0.00 0.00 3.50
312 313 1.192428 GTACGGAGGTTGATGGAGGT 58.808 55.000 0.00 0.00 0.00 3.85
313 314 1.191535 TGTACGGAGGTTGATGGAGG 58.808 55.000 0.00 0.00 0.00 4.30
314 315 3.262420 CTTTGTACGGAGGTTGATGGAG 58.738 50.000 0.00 0.00 0.00 3.86
315 316 2.635915 ACTTTGTACGGAGGTTGATGGA 59.364 45.455 0.00 0.00 0.00 3.41
316 317 2.742053 CACTTTGTACGGAGGTTGATGG 59.258 50.000 0.00 0.00 0.00 3.51
317 318 2.159627 GCACTTTGTACGGAGGTTGATG 59.840 50.000 0.00 0.00 0.00 3.07
318 319 2.038557 AGCACTTTGTACGGAGGTTGAT 59.961 45.455 0.00 0.00 0.00 2.57
319 320 1.414919 AGCACTTTGTACGGAGGTTGA 59.585 47.619 0.00 0.00 0.00 3.18
320 321 1.878953 AGCACTTTGTACGGAGGTTG 58.121 50.000 0.00 0.00 0.00 3.77
321 322 2.490991 GAAGCACTTTGTACGGAGGTT 58.509 47.619 0.00 0.00 0.00 3.50
322 323 1.270678 GGAAGCACTTTGTACGGAGGT 60.271 52.381 0.00 0.00 0.00 3.85
323 324 1.270625 TGGAAGCACTTTGTACGGAGG 60.271 52.381 0.00 0.00 0.00 4.30
324 325 2.069273 CTGGAAGCACTTTGTACGGAG 58.931 52.381 0.00 0.00 0.00 4.63
325 326 1.270625 CCTGGAAGCACTTTGTACGGA 60.271 52.381 0.00 0.00 0.00 4.69
326 327 1.156736 CCTGGAAGCACTTTGTACGG 58.843 55.000 0.00 0.00 0.00 4.02
327 328 2.069273 CTCCTGGAAGCACTTTGTACG 58.931 52.381 0.00 0.00 0.00 3.67
328 329 3.127425 ACTCCTGGAAGCACTTTGTAC 57.873 47.619 0.00 0.00 0.00 2.90
329 330 3.496160 GGAACTCCTGGAAGCACTTTGTA 60.496 47.826 0.00 0.00 0.00 2.41
330 331 2.576615 GAACTCCTGGAAGCACTTTGT 58.423 47.619 0.00 0.00 0.00 2.83
331 332 1.882623 GGAACTCCTGGAAGCACTTTG 59.117 52.381 0.00 0.00 0.00 2.77
332 333 1.494721 TGGAACTCCTGGAAGCACTTT 59.505 47.619 0.00 0.00 36.82 2.66
333 334 1.072965 CTGGAACTCCTGGAAGCACTT 59.927 52.381 0.00 0.00 36.82 3.16
334 335 0.689623 CTGGAACTCCTGGAAGCACT 59.310 55.000 0.00 0.00 36.82 4.40
335 336 0.957888 GCTGGAACTCCTGGAAGCAC 60.958 60.000 11.49 0.00 33.13 4.40
336 337 1.376466 GCTGGAACTCCTGGAAGCA 59.624 57.895 11.49 0.00 33.13 3.91
337 338 1.743252 CGCTGGAACTCCTGGAAGC 60.743 63.158 7.16 7.16 35.73 3.86
338 339 1.743252 GCGCTGGAACTCCTGGAAG 60.743 63.158 0.00 0.00 35.73 3.46
339 340 2.172483 GAGCGCTGGAACTCCTGGAA 62.172 60.000 18.48 0.00 35.73 3.53
340 341 2.604686 AGCGCTGGAACTCCTGGA 60.605 61.111 10.39 0.00 35.73 3.86
341 342 2.125350 GAGCGCTGGAACTCCTGG 60.125 66.667 18.48 0.00 35.73 4.45
345 346 3.254024 TTGGGGAGCGCTGGAACTC 62.254 63.158 18.48 0.00 0.00 3.01
346 347 3.249189 TTGGGGAGCGCTGGAACT 61.249 61.111 18.48 0.00 0.00 3.01
347 348 2.180159 TAGTTGGGGAGCGCTGGAAC 62.180 60.000 18.48 11.91 0.00 3.62
348 349 1.485294 TTAGTTGGGGAGCGCTGGAA 61.485 55.000 18.48 0.00 0.00 3.53
349 350 1.271840 ATTAGTTGGGGAGCGCTGGA 61.272 55.000 18.48 0.00 0.00 3.86
350 351 1.097547 CATTAGTTGGGGAGCGCTGG 61.098 60.000 18.48 0.00 0.00 4.85
351 352 0.107703 TCATTAGTTGGGGAGCGCTG 60.108 55.000 18.48 0.00 0.00 5.18
352 353 0.839946 ATCATTAGTTGGGGAGCGCT 59.160 50.000 11.27 11.27 0.00 5.92
353 354 1.230324 GATCATTAGTTGGGGAGCGC 58.770 55.000 0.00 0.00 0.00 5.92
354 355 1.502231 CGATCATTAGTTGGGGAGCG 58.498 55.000 0.00 0.00 32.73 5.03
355 356 1.230324 GCGATCATTAGTTGGGGAGC 58.770 55.000 0.00 0.00 0.00 4.70
356 357 1.417890 AGGCGATCATTAGTTGGGGAG 59.582 52.381 0.00 0.00 0.00 4.30
357 358 1.507140 AGGCGATCATTAGTTGGGGA 58.493 50.000 0.00 0.00 0.00 4.81
358 359 3.485463 TTAGGCGATCATTAGTTGGGG 57.515 47.619 0.00 0.00 0.00 4.96
359 360 4.273480 CAGTTTAGGCGATCATTAGTTGGG 59.727 45.833 0.00 0.00 0.00 4.12
360 361 5.116180 TCAGTTTAGGCGATCATTAGTTGG 58.884 41.667 0.00 0.00 0.00 3.77
361 362 6.662414 TTCAGTTTAGGCGATCATTAGTTG 57.338 37.500 0.00 0.00 0.00 3.16
362 363 9.561069 AATATTCAGTTTAGGCGATCATTAGTT 57.439 29.630 0.00 0.00 0.00 2.24
363 364 9.561069 AAATATTCAGTTTAGGCGATCATTAGT 57.439 29.630 0.00 0.00 0.00 2.24
367 368 9.003658 CCTTAAATATTCAGTTTAGGCGATCAT 57.996 33.333 0.00 0.00 0.00 2.45
368 369 7.444183 CCCTTAAATATTCAGTTTAGGCGATCA 59.556 37.037 0.00 0.00 0.00 2.92
369 370 7.444487 ACCCTTAAATATTCAGTTTAGGCGATC 59.556 37.037 0.00 0.00 0.00 3.69
370 371 7.287810 ACCCTTAAATATTCAGTTTAGGCGAT 58.712 34.615 0.00 0.00 0.00 4.58
371 372 6.655930 ACCCTTAAATATTCAGTTTAGGCGA 58.344 36.000 0.00 0.00 0.00 5.54
372 373 6.937436 ACCCTTAAATATTCAGTTTAGGCG 57.063 37.500 0.00 0.00 0.00 5.52
373 374 7.041576 CGGTACCCTTAAATATTCAGTTTAGGC 60.042 40.741 6.25 0.00 0.00 3.93
374 375 8.206189 TCGGTACCCTTAAATATTCAGTTTAGG 58.794 37.037 6.25 0.00 0.00 2.69
375 376 9.774413 ATCGGTACCCTTAAATATTCAGTTTAG 57.226 33.333 6.25 0.00 0.00 1.85
377 378 9.470399 AAATCGGTACCCTTAAATATTCAGTTT 57.530 29.630 6.25 0.00 0.00 2.66
378 379 9.470399 AAAATCGGTACCCTTAAATATTCAGTT 57.530 29.630 6.25 0.00 0.00 3.16
379 380 9.117183 GAAAATCGGTACCCTTAAATATTCAGT 57.883 33.333 6.25 0.00 0.00 3.41
380 381 9.116067 TGAAAATCGGTACCCTTAAATATTCAG 57.884 33.333 6.25 0.00 0.00 3.02
381 382 9.635404 ATGAAAATCGGTACCCTTAAATATTCA 57.365 29.630 6.25 7.23 0.00 2.57
386 387 9.635404 TTCATATGAAAATCGGTACCCTTAAAT 57.365 29.630 15.82 0.00 0.00 1.40
387 388 9.635404 ATTCATATGAAAATCGGTACCCTTAAA 57.365 29.630 21.50 0.00 37.61 1.52
388 389 9.280174 GATTCATATGAAAATCGGTACCCTTAA 57.720 33.333 21.50 0.00 37.61 1.85
389 390 8.656806 AGATTCATATGAAAATCGGTACCCTTA 58.343 33.333 21.50 0.00 37.61 2.69
390 391 7.518188 AGATTCATATGAAAATCGGTACCCTT 58.482 34.615 21.50 0.80 37.61 3.95
391 392 7.079451 AGATTCATATGAAAATCGGTACCCT 57.921 36.000 21.50 1.00 37.61 4.34
392 393 8.311836 TCTAGATTCATATGAAAATCGGTACCC 58.688 37.037 21.50 0.00 37.61 3.69
393 394 9.706691 TTCTAGATTCATATGAAAATCGGTACC 57.293 33.333 21.50 0.16 37.61 3.34
396 397 9.784531 ATGTTCTAGATTCATATGAAAATCGGT 57.215 29.630 21.50 4.49 37.61 4.69
586 671 9.950680 CTGAAAACTAAATGTTGTATGTCTTGT 57.049 29.630 0.00 0.00 39.13 3.16
590 675 8.349983 ACCACTGAAAACTAAATGTTGTATGTC 58.650 33.333 0.00 0.00 39.13 3.06
601 686 9.403583 AGATTAAGACAACCACTGAAAACTAAA 57.596 29.630 0.00 0.00 0.00 1.85
695 789 5.979288 TTTGCCCGCCTATAAACTTTTTA 57.021 34.783 0.00 0.00 0.00 1.52
709 804 0.881118 TGACTCTTCAATTTGCCCGC 59.119 50.000 0.00 0.00 0.00 6.13
738 833 2.856720 GCAAAGACCAATTCGTCGCAAA 60.857 45.455 0.00 0.00 37.85 3.68
775 871 5.687780 ACATCTCCATAATGCAACATCAGA 58.312 37.500 0.00 0.00 0.00 3.27
871 1078 3.824443 TCTGTATGAACTCGGTGTTGAGA 59.176 43.478 0.00 0.00 39.30 3.27
911 1127 1.453524 CGCATGTAGAAGCACTATCGC 59.546 52.381 0.00 0.00 33.39 4.58
966 1182 8.510243 TGCTATGTTCATGAAATGTATTCTGT 57.490 30.769 10.35 0.00 46.80 3.41
1044 1266 0.733150 GCCTTAGCTAGGTTTTGCCG 59.267 55.000 0.00 0.00 46.61 5.69
1064 1286 3.450578 CGGATTGCCATTGGAGATTTTG 58.549 45.455 6.95 0.00 0.00 2.44
1085 1307 8.980143 TGCTGGTATTTTATTTGTTTTCTAGC 57.020 30.769 0.00 0.00 0.00 3.42
1176 1430 2.715749 TGCCATGAACACCCTCTATG 57.284 50.000 0.00 0.00 0.00 2.23
1268 1522 0.815213 GGCACAACACTCAGCTGACA 60.815 55.000 13.74 0.00 0.00 3.58
1302 1556 2.223157 GCGGCAAATGCACGATAAGTTA 60.223 45.455 16.67 0.00 44.36 2.24
1391 1646 3.355378 CATAGTGAGGCCACAATTTCCA 58.645 45.455 8.78 0.00 45.54 3.53
1464 1726 3.507622 TGATGCATATCTAGACCGACCAG 59.492 47.826 0.00 0.00 34.31 4.00
1537 1827 5.300752 AGAGACGTGTTCAAATCAGACAAT 58.699 37.500 0.00 0.00 0.00 2.71
1542 1832 6.325596 TGAGATAGAGACGTGTTCAAATCAG 58.674 40.000 0.00 0.00 0.00 2.90
1553 1843 6.932400 ACGAGAGATTAATGAGATAGAGACGT 59.068 38.462 0.00 0.00 0.00 4.34
1557 1848 9.393249 GTTCAACGAGAGATTAATGAGATAGAG 57.607 37.037 0.00 0.00 0.00 2.43
1722 2024 3.944015 CCTAGCAGACTGATTGGGAAAAG 59.056 47.826 12.69 0.00 0.00 2.27
1772 2379 2.383442 AGGATGTATACCAGTCGCCT 57.617 50.000 0.00 0.00 0.00 5.52
1826 2969 1.484653 AGTGCAGTCGGCCATATGTTA 59.515 47.619 2.24 0.00 43.89 2.41
1838 2981 4.034048 CCAACCGTATATTTCAGTGCAGTC 59.966 45.833 0.00 0.00 0.00 3.51
1897 3040 7.232737 AGGGAACTGAAATTAGGAACGAAAATT 59.767 33.333 0.00 0.00 41.13 1.82
1903 3046 5.959618 AAAGGGAACTGAAATTAGGAACG 57.040 39.130 0.00 0.00 42.68 3.95
1944 3087 5.817816 ACTAAAATCGACAAGAGGGCAATAG 59.182 40.000 0.00 0.00 0.00 1.73
1946 3089 4.589908 ACTAAAATCGACAAGAGGGCAAT 58.410 39.130 0.00 0.00 0.00 3.56
1948 3091 3.695830 ACTAAAATCGACAAGAGGGCA 57.304 42.857 0.00 0.00 0.00 5.36
1950 3093 5.941948 ACAAACTAAAATCGACAAGAGGG 57.058 39.130 0.00 0.00 0.00 4.30
2001 3144 2.292267 AGGTTGCGAGATATGCCAAAG 58.708 47.619 0.00 0.00 0.00 2.77
2005 3148 4.566004 TGTATTAGGTTGCGAGATATGCC 58.434 43.478 0.00 0.00 0.00 4.40
2008 3151 8.559536 CAAAACATGTATTAGGTTGCGAGATAT 58.440 33.333 0.00 0.00 32.87 1.63
2012 3155 5.938322 ACAAAACATGTATTAGGTTGCGAG 58.062 37.500 0.00 0.00 41.63 5.03
2058 3201 0.106769 ACATGTGGTGTGCAGGTCAA 60.107 50.000 0.00 0.00 40.28 3.18
2079 3223 9.846248 ACAAAAATAACAAATCTCTAGTGATGC 57.154 29.630 8.03 0.00 0.00 3.91
2090 3234 5.344933 GCGAGGGTGACAAAAATAACAAATC 59.655 40.000 0.00 0.00 0.00 2.17
2131 3275 6.489700 ACATGAGACCATTAACATTGTCACAA 59.510 34.615 0.00 0.00 32.04 3.33
2139 3283 8.352137 TCATTTGAACATGAGACCATTAACAT 57.648 30.769 0.00 0.00 0.00 2.71
2259 3403 7.087639 TGTAACAAATTAATTAGCACACTGGC 58.912 34.615 0.01 0.00 0.00 4.85
2281 3425 4.209307 TGGCCGTCAACATAAGAATGTA 57.791 40.909 0.00 0.00 45.79 2.29
2283 3427 3.243168 CCATGGCCGTCAACATAAGAATG 60.243 47.826 0.00 0.00 39.17 2.67
2284 3428 2.951642 CCATGGCCGTCAACATAAGAAT 59.048 45.455 0.00 0.00 0.00 2.40
2285 3429 2.026729 TCCATGGCCGTCAACATAAGAA 60.027 45.455 6.96 0.00 0.00 2.52
2286 3430 1.557371 TCCATGGCCGTCAACATAAGA 59.443 47.619 6.96 0.00 0.00 2.10
2287 3431 1.670811 GTCCATGGCCGTCAACATAAG 59.329 52.381 6.96 0.00 0.00 1.73
2288 3432 1.680555 GGTCCATGGCCGTCAACATAA 60.681 52.381 6.96 0.00 0.00 1.90
2289 3433 0.107410 GGTCCATGGCCGTCAACATA 60.107 55.000 6.96 0.00 0.00 2.29
2290 3434 1.378514 GGTCCATGGCCGTCAACAT 60.379 57.895 6.96 0.00 0.00 2.71
2291 3435 2.033448 GGTCCATGGCCGTCAACA 59.967 61.111 6.96 0.00 0.00 3.33
2292 3436 2.750237 GGGTCCATGGCCGTCAAC 60.750 66.667 6.96 0.00 0.00 3.18
2293 3437 4.041762 GGGGTCCATGGCCGTCAA 62.042 66.667 6.96 0.00 0.00 3.18
2318 3481 7.876582 TGTCTTGAAGCTTCTATCCATCATATG 59.123 37.037 26.09 0.00 0.00 1.78
2320 3483 7.365497 TGTCTTGAAGCTTCTATCCATCATA 57.635 36.000 26.09 0.00 0.00 2.15
2343 3506 5.755375 AGATGTGTATCTTAACTTGGCGATG 59.245 40.000 0.00 0.00 40.79 3.84
2382 3545 3.265737 AGTGGTACATAAGGTGATGGCAA 59.734 43.478 0.00 0.00 44.52 4.52
2428 3591 3.949842 TGTGGACATCAGAGTTCAGAG 57.050 47.619 0.00 0.00 0.00 3.35
2429 3592 4.687901 TTTGTGGACATCAGAGTTCAGA 57.312 40.909 0.00 0.00 0.00 3.27
2430 3593 4.818546 AGTTTTGTGGACATCAGAGTTCAG 59.181 41.667 0.00 0.00 0.00 3.02
2431 3594 4.780815 AGTTTTGTGGACATCAGAGTTCA 58.219 39.130 0.00 0.00 0.00 3.18
2432 3595 5.296780 TGAAGTTTTGTGGACATCAGAGTTC 59.703 40.000 0.00 0.00 0.00 3.01
2433 3596 5.192927 TGAAGTTTTGTGGACATCAGAGTT 58.807 37.500 0.00 0.00 0.00 3.01
2434 3597 4.780815 TGAAGTTTTGTGGACATCAGAGT 58.219 39.130 0.00 0.00 0.00 3.24
2504 3669 7.013464 ACCGAGAGAAGACTACATAACCTATTG 59.987 40.741 0.00 0.00 0.00 1.90
2506 3672 6.603224 ACCGAGAGAAGACTACATAACCTAT 58.397 40.000 0.00 0.00 0.00 2.57
2516 3682 5.622460 GCATCTTTGAACCGAGAGAAGACTA 60.622 44.000 0.00 0.00 0.00 2.59
2606 3941 7.272978 TGGAAGGCATTAGTAACTATTGTCTC 58.727 38.462 0.00 0.00 33.15 3.36
2608 3943 7.467403 GCTTGGAAGGCATTAGTAACTATTGTC 60.467 40.741 0.00 0.00 0.00 3.18
2676 4011 3.192844 CAGAGGTGCTGCAAAAGATGAAT 59.807 43.478 2.77 0.00 37.90 2.57
2684 4019 1.985473 ACATTCAGAGGTGCTGCAAA 58.015 45.000 2.77 0.00 44.52 3.68
2825 4216 5.735766 TGAATGGAACCGATATGTACACAA 58.264 37.500 0.00 0.00 0.00 3.33
2826 4217 5.346181 TGAATGGAACCGATATGTACACA 57.654 39.130 0.00 0.00 0.00 3.72
2865 4261 6.542821 TGGAAGGTGAACTGAATAATTGACT 58.457 36.000 0.00 0.00 0.00 3.41
2919 4315 4.953940 TGATGATATCCAATGGACGTGA 57.046 40.909 3.09 0.00 32.98 4.35
2923 4319 8.908786 TTTAGACTTGATGATATCCAATGGAC 57.091 34.615 3.09 0.00 32.98 4.02
2946 4343 8.278639 ACCCCAACTTTTCCTCAATTAAAATTT 58.721 29.630 0.00 0.00 0.00 1.82
2949 4346 6.384305 TGACCCCAACTTTTCCTCAATTAAAA 59.616 34.615 0.00 0.00 0.00 1.52
2971 4369 2.673368 GGACATCATCGACTGGTTTGAC 59.327 50.000 0.00 0.00 0.00 3.18
2977 4375 2.167281 AGACTTGGACATCATCGACTGG 59.833 50.000 0.00 0.00 0.00 4.00
3002 4400 4.449743 TGGCAATTAGTCGTGTACTTTGTC 59.550 41.667 0.00 0.00 39.80 3.18
3014 4412 5.824904 ATGATGAGTTGTGGCAATTAGTC 57.175 39.130 0.00 0.00 0.00 2.59
3067 4472 6.435292 ACTCATGGGTTAAACTAGTGAACT 57.565 37.500 16.46 0.00 0.00 3.01
3098 4503 1.277273 ACCGAGGTACCTAAAAGCACC 59.723 52.381 16.29 0.00 0.00 5.01
3107 4512 0.255318 AGATGTCGACCGAGGTACCT 59.745 55.000 16.26 16.26 0.00 3.08
3115 4520 3.972950 AATACTCTGAGATGTCGACCG 57.027 47.619 14.12 0.00 0.00 4.79
3129 4534 7.900782 TGTTGGTAGTAGCAGAAAAATACTC 57.099 36.000 1.77 0.00 32.25 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.