Multiple sequence alignment - TraesCS5A01G069800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G069800 chr5A 100.000 4709 0 0 1 4709 78326026 78321318 0.000000e+00 8696.0
1 TraesCS5A01G069800 chr5A 98.217 4319 46 6 420 4709 78266804 78262488 0.000000e+00 7520.0
2 TraesCS5A01G069800 chr5A 96.802 4315 86 11 425 4709 623556655 623552363 0.000000e+00 7156.0
3 TraesCS5A01G069800 chr5A 94.263 1377 42 6 412 1751 426932602 426931226 0.000000e+00 2071.0
4 TraesCS5A01G069800 chr5A 84.259 108 11 4 2 106 374640817 374640713 3.000000e-17 100.0
5 TraesCS5A01G069800 chr1A 98.245 4330 45 6 410 4709 244511222 244506894 0.000000e+00 7546.0
6 TraesCS5A01G069800 chr1A 98.095 4305 51 6 436 4709 587388434 587384130 0.000000e+00 7467.0
7 TraesCS5A01G069800 chr1A 97.926 2314 45 3 2397 4709 97645379 97643068 0.000000e+00 4004.0
8 TraesCS5A01G069800 chr1A 94.064 1988 88 5 405 2362 97647364 97645377 0.000000e+00 2990.0
9 TraesCS5A01G069800 chr1A 89.655 609 38 2 1249 1832 452018765 452019373 0.000000e+00 752.0
10 TraesCS5A01G069800 chr1A 88.235 68 6 2 347 413 584528334 584528400 3.910000e-11 80.5
11 TraesCS5A01G069800 chr2B 99.001 4103 39 2 609 4709 596913447 596909345 0.000000e+00 7348.0
12 TraesCS5A01G069800 chr2B 94.313 211 11 1 411 620 596913691 596913481 5.880000e-84 322.0
13 TraesCS5A01G069800 chr2B 88.406 69 6 2 346 413 438460303 438460370 1.090000e-11 82.4
14 TraesCS5A01G069800 chr2B 88.060 67 6 2 347 412 21618624 21618689 1.400000e-10 78.7
15 TraesCS5A01G069800 chr2B 86.364 66 7 2 347 411 786193902 786193966 2.350000e-08 71.3
16 TraesCS5A01G069800 chr2B 100.000 29 0 0 75 103 23271044 23271072 2.000000e-03 54.7
17 TraesCS5A01G069800 chr6B 91.111 1395 83 12 2674 4047 270877251 270878625 0.000000e+00 1851.0
18 TraesCS5A01G069800 chr6B 93.657 804 41 5 1878 2675 270876419 270877218 0.000000e+00 1194.0
19 TraesCS5A01G069800 chr6B 86.327 373 35 7 4174 4546 270878866 270879222 4.420000e-105 392.0
20 TraesCS5A01G069800 chr6B 93.023 86 1 2 4051 4136 270878674 270878754 2.300000e-23 121.0
21 TraesCS5A01G069800 chr5B 93.500 800 48 3 1878 2675 127701890 127701093 0.000000e+00 1186.0
22 TraesCS5A01G069800 chr5B 76.293 232 44 8 1 230 516101492 516101270 3.850000e-21 113.0
23 TraesCS5A01G069800 chr5B 91.071 56 5 0 2670 2725 127701064 127701009 5.050000e-10 76.8
24 TraesCS5A01G069800 chr5B 86.567 67 7 2 346 411 525369737 525369672 6.540000e-09 73.1
25 TraesCS5A01G069800 chr5B 93.617 47 3 0 4012 4058 635464473 635464519 2.350000e-08 71.3
26 TraesCS5A01G069800 chr5B 74.020 204 34 15 1 199 221909863 221909674 1.090000e-06 65.8
27 TraesCS5A01G069800 chr2A 87.141 941 88 12 3128 4053 456212800 456213722 0.000000e+00 1037.0
28 TraesCS5A01G069800 chr2A 86.387 595 48 10 410 974 734548628 734549219 1.860000e-173 619.0
29 TraesCS5A01G069800 chr3D 88.615 852 63 16 426 1248 281331189 281330343 0.000000e+00 1005.0
30 TraesCS5A01G069800 chr3D 87.545 827 67 18 451 1248 187932 187113 0.000000e+00 924.0
31 TraesCS5A01G069800 chr3A 86.093 942 98 15 3128 4053 670100950 670100026 0.000000e+00 983.0
32 TraesCS5A01G069800 chr1B 89.355 620 40 3 1249 1842 473822496 473823115 0.000000e+00 756.0
33 TraesCS5A01G069800 chr1D 89.070 613 42 2 1249 1836 351245770 351246382 0.000000e+00 737.0
34 TraesCS5A01G069800 chr5D 88.091 529 48 13 451 971 119481328 119480807 8.660000e-172 614.0
35 TraesCS5A01G069800 chr5D 83.932 473 43 15 2104 2550 382914210 382913745 5.630000e-114 422.0
36 TraesCS5A01G069800 chr5D 90.566 53 2 3 4006 4057 458811242 458811292 3.040000e-07 67.6
37 TraesCS5A01G069800 chrUn 91.351 370 23 5 4184 4551 466505782 466505420 9.100000e-137 497.0
38 TraesCS5A01G069800 chrUn 90.551 254 22 1 1878 2129 8502819 8503072 7.550000e-88 335.0
39 TraesCS5A01G069800 chr2D 82.707 399 56 11 4291 4680 396186269 396186663 4.510000e-90 342.0
40 TraesCS5A01G069800 chr6A 81.989 372 39 16 4357 4706 314314327 314313962 1.660000e-74 291.0
41 TraesCS5A01G069800 chr6A 91.045 67 6 0 347 413 572857372 572857438 1.800000e-14 91.6
42 TraesCS5A01G069800 chr6A 100.000 29 0 0 75 103 335774246 335774218 2.000000e-03 54.7
43 TraesCS5A01G069800 chr7B 76.230 244 36 11 39 279 154816443 154816219 4.980000e-20 110.0
44 TraesCS5A01G069800 chr6D 76.096 251 37 17 20 268 441673893 441673664 4.980000e-20 110.0
45 TraesCS5A01G069800 chr7D 75.598 209 35 11 76 279 124641523 124641720 6.490000e-14 89.8
46 TraesCS5A01G069800 chr4B 85.333 75 11 0 339 413 195440465 195440391 1.400000e-10 78.7
47 TraesCS5A01G069800 chr4B 100.000 29 0 0 75 103 598082601 598082573 2.000000e-03 54.7
48 TraesCS5A01G069800 chr3B 87.143 70 7 2 343 411 373091345 373091277 1.400000e-10 78.7
49 TraesCS5A01G069800 chr3B 92.000 50 3 1 4009 4057 99080209 99080258 8.460000e-08 69.4
50 TraesCS5A01G069800 chr4A 86.765 68 7 2 347 413 640769586 640769652 1.820000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G069800 chr5A 78321318 78326026 4708 True 8696.0 8696 100.0000 1 4709 1 chr5A.!!$R2 4708
1 TraesCS5A01G069800 chr5A 78262488 78266804 4316 True 7520.0 7520 98.2170 420 4709 1 chr5A.!!$R1 4289
2 TraesCS5A01G069800 chr5A 623552363 623556655 4292 True 7156.0 7156 96.8020 425 4709 1 chr5A.!!$R5 4284
3 TraesCS5A01G069800 chr5A 426931226 426932602 1376 True 2071.0 2071 94.2630 412 1751 1 chr5A.!!$R4 1339
4 TraesCS5A01G069800 chr1A 244506894 244511222 4328 True 7546.0 7546 98.2450 410 4709 1 chr1A.!!$R1 4299
5 TraesCS5A01G069800 chr1A 587384130 587388434 4304 True 7467.0 7467 98.0950 436 4709 1 chr1A.!!$R2 4273
6 TraesCS5A01G069800 chr1A 97643068 97647364 4296 True 3497.0 4004 95.9950 405 4709 2 chr1A.!!$R3 4304
7 TraesCS5A01G069800 chr1A 452018765 452019373 608 False 752.0 752 89.6550 1249 1832 1 chr1A.!!$F1 583
8 TraesCS5A01G069800 chr2B 596909345 596913691 4346 True 3835.0 7348 96.6570 411 4709 2 chr2B.!!$R1 4298
9 TraesCS5A01G069800 chr6B 270876419 270879222 2803 False 889.5 1851 91.0295 1878 4546 4 chr6B.!!$F1 2668
10 TraesCS5A01G069800 chr5B 127701009 127701890 881 True 631.4 1186 92.2855 1878 2725 2 chr5B.!!$R4 847
11 TraesCS5A01G069800 chr2A 456212800 456213722 922 False 1037.0 1037 87.1410 3128 4053 1 chr2A.!!$F1 925
12 TraesCS5A01G069800 chr2A 734548628 734549219 591 False 619.0 619 86.3870 410 974 1 chr2A.!!$F2 564
13 TraesCS5A01G069800 chr3D 281330343 281331189 846 True 1005.0 1005 88.6150 426 1248 1 chr3D.!!$R2 822
14 TraesCS5A01G069800 chr3D 187113 187932 819 True 924.0 924 87.5450 451 1248 1 chr3D.!!$R1 797
15 TraesCS5A01G069800 chr3A 670100026 670100950 924 True 983.0 983 86.0930 3128 4053 1 chr3A.!!$R1 925
16 TraesCS5A01G069800 chr1B 473822496 473823115 619 False 756.0 756 89.3550 1249 1842 1 chr1B.!!$F1 593
17 TraesCS5A01G069800 chr1D 351245770 351246382 612 False 737.0 737 89.0700 1249 1836 1 chr1D.!!$F1 587
18 TraesCS5A01G069800 chr5D 119480807 119481328 521 True 614.0 614 88.0910 451 971 1 chr5D.!!$R1 520

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
173 174 0.027586 GTGCCGACACAAACACACTC 59.972 55.000 0.00 0.00 46.61 3.51 F
282 283 0.032403 TTCGACACAAACGGACCGAT 59.968 50.000 23.38 5.64 0.00 4.18 F
404 405 0.107848 CACCGGGTAAGAAATCCGCT 60.108 55.000 6.32 0.00 42.18 5.52 F
405 406 0.616891 ACCGGGTAAGAAATCCGCTT 59.383 50.000 6.32 0.00 42.18 4.68 F
885 942 1.741770 GCCTCTCCGTGCGAACAAT 60.742 57.895 0.00 0.00 0.00 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1219 1277 4.243008 TTGGGAACGCGTGCTCCA 62.243 61.111 26.63 23.27 32.95 3.86 R
2281 2384 0.469705 ATTGCCTCCCAAGTTGTGCA 60.470 50.000 1.45 2.61 36.76 4.57 R
3474 3625 9.057089 GCAAGCTTACAGATATATTTTAGTGGT 57.943 33.333 0.00 0.00 0.00 4.16 R
3691 3847 4.394729 TGTAGTTACCTCCCTGCAAAAAG 58.605 43.478 0.00 0.00 0.00 2.27 R
3879 4036 0.035439 AAGCCTAATGACCACACCGG 60.035 55.000 0.00 0.00 42.50 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.609783 ACCAGAATAGGGTGGCAGC 59.390 57.895 8.47 8.47 37.23 5.25
23 24 0.916358 ACCAGAATAGGGTGGCAGCT 60.916 55.000 17.16 5.32 37.23 4.24
24 25 0.465097 CCAGAATAGGGTGGCAGCTG 60.465 60.000 17.16 10.11 0.00 4.24
25 26 1.099879 CAGAATAGGGTGGCAGCTGC 61.100 60.000 30.88 30.88 41.14 5.25
26 27 1.077501 GAATAGGGTGGCAGCTGCA 60.078 57.895 37.63 22.06 44.36 4.41
27 28 0.680921 GAATAGGGTGGCAGCTGCAA 60.681 55.000 37.63 27.49 44.36 4.08
28 29 0.032813 AATAGGGTGGCAGCTGCAAT 60.033 50.000 37.63 20.61 44.36 3.56
29 30 0.754217 ATAGGGTGGCAGCTGCAATG 60.754 55.000 37.63 2.80 44.36 2.82
30 31 2.842188 TAGGGTGGCAGCTGCAATGG 62.842 60.000 37.63 0.81 44.36 3.16
31 32 3.766691 GGTGGCAGCTGCAATGGG 61.767 66.667 37.63 0.00 44.36 4.00
32 33 2.993264 GTGGCAGCTGCAATGGGT 60.993 61.111 37.63 0.00 44.36 4.51
33 34 2.992689 TGGCAGCTGCAATGGGTG 60.993 61.111 37.63 0.00 44.36 4.61
34 35 3.766691 GGCAGCTGCAATGGGTGG 61.767 66.667 37.63 0.00 44.36 4.61
35 36 4.446413 GCAGCTGCAATGGGTGGC 62.446 66.667 33.36 1.04 41.59 5.01
36 37 4.124351 CAGCTGCAATGGGTGGCG 62.124 66.667 0.00 0.00 0.00 5.69
57 58 4.954970 CCAGGTGTGCTGGCCGTT 62.955 66.667 0.00 0.00 34.98 4.44
58 59 3.663176 CAGGTGTGCTGGCCGTTG 61.663 66.667 0.00 0.00 0.00 4.10
59 60 3.872603 AGGTGTGCTGGCCGTTGA 61.873 61.111 0.00 0.00 0.00 3.18
60 61 2.672996 GGTGTGCTGGCCGTTGAT 60.673 61.111 0.00 0.00 0.00 2.57
61 62 2.562912 GTGTGCTGGCCGTTGATG 59.437 61.111 0.00 0.00 0.00 3.07
62 63 2.672651 TGTGCTGGCCGTTGATGG 60.673 61.111 0.00 0.00 0.00 3.51
63 64 3.443045 GTGCTGGCCGTTGATGGG 61.443 66.667 0.00 0.00 0.00 4.00
64 65 3.645660 TGCTGGCCGTTGATGGGA 61.646 61.111 0.00 0.00 0.00 4.37
65 66 2.825836 GCTGGCCGTTGATGGGAG 60.826 66.667 0.00 0.00 0.00 4.30
66 67 2.124570 CTGGCCGTTGATGGGAGG 60.125 66.667 0.00 0.00 0.00 4.30
67 68 2.609299 TGGCCGTTGATGGGAGGA 60.609 61.111 0.00 0.00 0.00 3.71
68 69 2.196997 CTGGCCGTTGATGGGAGGAA 62.197 60.000 0.00 0.00 0.00 3.36
69 70 1.452108 GGCCGTTGATGGGAGGAAG 60.452 63.158 0.00 0.00 0.00 3.46
70 71 1.452108 GCCGTTGATGGGAGGAAGG 60.452 63.158 0.00 0.00 0.00 3.46
71 72 1.224592 CCGTTGATGGGAGGAAGGG 59.775 63.158 0.00 0.00 0.00 3.95
72 73 1.224592 CGTTGATGGGAGGAAGGGG 59.775 63.158 0.00 0.00 0.00 4.79
73 74 1.076705 GTTGATGGGAGGAAGGGGC 60.077 63.158 0.00 0.00 0.00 5.80
74 75 1.543642 TTGATGGGAGGAAGGGGCA 60.544 57.895 0.00 0.00 0.00 5.36
75 76 1.145900 TTGATGGGAGGAAGGGGCAA 61.146 55.000 0.00 0.00 0.00 4.52
76 77 0.925720 TGATGGGAGGAAGGGGCAAT 60.926 55.000 0.00 0.00 0.00 3.56
77 78 0.468771 GATGGGAGGAAGGGGCAATG 60.469 60.000 0.00 0.00 0.00 2.82
78 79 1.953100 ATGGGAGGAAGGGGCAATGG 61.953 60.000 0.00 0.00 0.00 3.16
79 80 2.442830 GGAGGAAGGGGCAATGGC 60.443 66.667 0.00 0.00 40.13 4.40
95 96 2.672996 GCCAATGTGCCACCGACT 60.673 61.111 0.00 0.00 0.00 4.18
96 97 2.981560 GCCAATGTGCCACCGACTG 61.982 63.158 0.00 0.00 0.00 3.51
97 98 2.334946 CCAATGTGCCACCGACTGG 61.335 63.158 0.00 0.00 44.08 4.00
118 119 2.598394 GCTGGCAGGCCACAAGAA 60.598 61.111 17.64 0.00 41.89 2.52
119 120 2.924105 GCTGGCAGGCCACAAGAAC 61.924 63.158 17.64 0.00 41.89 3.01
120 121 1.529010 CTGGCAGGCCACAAGAACA 60.529 57.895 9.35 0.00 41.89 3.18
121 122 1.076412 TGGCAGGCCACAAGAACAA 60.076 52.632 9.35 0.00 41.89 2.83
122 123 1.108727 TGGCAGGCCACAAGAACAAG 61.109 55.000 9.35 0.00 41.89 3.16
123 124 1.662044 GCAGGCCACAAGAACAAGG 59.338 57.895 5.01 0.00 0.00 3.61
124 125 0.823356 GCAGGCCACAAGAACAAGGA 60.823 55.000 5.01 0.00 0.00 3.36
125 126 1.915141 CAGGCCACAAGAACAAGGAT 58.085 50.000 5.01 0.00 0.00 3.24
126 127 2.879756 GCAGGCCACAAGAACAAGGATA 60.880 50.000 5.01 0.00 0.00 2.59
127 128 3.012518 CAGGCCACAAGAACAAGGATAG 58.987 50.000 5.01 0.00 0.00 2.08
128 129 2.025887 AGGCCACAAGAACAAGGATAGG 60.026 50.000 5.01 0.00 0.00 2.57
129 130 1.745653 GCCACAAGAACAAGGATAGGC 59.254 52.381 0.00 0.00 0.00 3.93
130 131 2.009774 CCACAAGAACAAGGATAGGCG 58.990 52.381 0.00 0.00 0.00 5.52
131 132 2.615493 CCACAAGAACAAGGATAGGCGT 60.615 50.000 0.00 0.00 0.00 5.68
132 133 2.673368 CACAAGAACAAGGATAGGCGTC 59.327 50.000 0.00 0.00 0.00 5.19
133 134 1.927174 CAAGAACAAGGATAGGCGTCG 59.073 52.381 0.00 0.00 0.00 5.12
134 135 0.179108 AGAACAAGGATAGGCGTCGC 60.179 55.000 9.22 9.22 0.00 5.19
135 136 0.459585 GAACAAGGATAGGCGTCGCA 60.460 55.000 20.50 0.00 0.00 5.10
136 137 0.739813 AACAAGGATAGGCGTCGCAC 60.740 55.000 20.50 8.57 0.00 5.34
137 138 2.104331 AAGGATAGGCGTCGCACG 59.896 61.111 20.50 0.00 45.88 5.34
151 152 3.636043 CACGCGTCCGCTGTGTTT 61.636 61.111 9.86 0.00 39.16 2.83
152 153 3.335534 ACGCGTCCGCTGTGTTTC 61.336 61.111 5.58 0.00 39.32 2.78
153 154 4.072088 CGCGTCCGCTGTGTTTCC 62.072 66.667 10.21 0.00 39.32 3.13
154 155 4.072088 GCGTCCGCTGTGTTTCCG 62.072 66.667 4.10 0.00 38.26 4.30
155 156 2.660552 CGTCCGCTGTGTTTCCGT 60.661 61.111 0.00 0.00 0.00 4.69
156 157 2.935955 GTCCGCTGTGTTTCCGTG 59.064 61.111 0.00 0.00 0.00 4.94
157 158 2.970324 TCCGCTGTGTTTCCGTGC 60.970 61.111 0.00 0.00 0.00 5.34
158 159 4.025401 CCGCTGTGTTTCCGTGCC 62.025 66.667 0.00 0.00 0.00 5.01
159 160 4.368808 CGCTGTGTTTCCGTGCCG 62.369 66.667 0.00 0.00 0.00 5.69
160 161 2.970324 GCTGTGTTTCCGTGCCGA 60.970 61.111 0.00 0.00 0.00 5.54
161 162 2.935955 CTGTGTTTCCGTGCCGAC 59.064 61.111 0.00 0.00 0.00 4.79
162 163 1.885388 CTGTGTTTCCGTGCCGACA 60.885 57.895 0.00 0.00 0.00 4.35
163 164 2.101209 CTGTGTTTCCGTGCCGACAC 62.101 60.000 0.00 0.00 43.76 3.67
171 172 4.682306 GTGCCGACACAAACACAC 57.318 55.556 0.00 0.00 46.61 3.82
172 173 2.094904 GTGCCGACACAAACACACT 58.905 52.632 0.00 0.00 46.61 3.55
173 174 0.027586 GTGCCGACACAAACACACTC 59.972 55.000 0.00 0.00 46.61 3.51
174 175 1.092921 TGCCGACACAAACACACTCC 61.093 55.000 0.00 0.00 0.00 3.85
175 176 1.092921 GCCGACACAAACACACTCCA 61.093 55.000 0.00 0.00 0.00 3.86
176 177 1.374560 CCGACACAAACACACTCCAA 58.625 50.000 0.00 0.00 0.00 3.53
177 178 1.740585 CCGACACAAACACACTCCAAA 59.259 47.619 0.00 0.00 0.00 3.28
178 179 2.357637 CCGACACAAACACACTCCAAAT 59.642 45.455 0.00 0.00 0.00 2.32
179 180 3.181491 CCGACACAAACACACTCCAAATT 60.181 43.478 0.00 0.00 0.00 1.82
180 181 4.420168 CGACACAAACACACTCCAAATTT 58.580 39.130 0.00 0.00 0.00 1.82
181 182 4.265085 CGACACAAACACACTCCAAATTTG 59.735 41.667 11.40 11.40 36.54 2.32
184 185 8.735513 GACACAAACACACTCCAAATTTGGGT 62.736 42.308 31.96 25.28 46.69 4.51
185 186 8.735513 ACACAAACACACTCCAAATTTGGGTC 62.736 42.308 31.96 0.00 41.81 4.46
194 195 3.941573 CCAAATTTGGGTCTGAAATGGG 58.058 45.455 26.87 0.00 44.70 4.00
195 196 3.327464 CCAAATTTGGGTCTGAAATGGGT 59.673 43.478 26.87 0.00 44.70 4.51
196 197 4.563374 CCAAATTTGGGTCTGAAATGGGTC 60.563 45.833 26.87 0.00 44.70 4.46
197 198 1.904287 TTTGGGTCTGAAATGGGTCG 58.096 50.000 0.00 0.00 0.00 4.79
198 199 0.608035 TTGGGTCTGAAATGGGTCGC 60.608 55.000 0.00 0.00 0.00 5.19
199 200 2.106683 GGGTCTGAAATGGGTCGCG 61.107 63.158 0.00 0.00 0.00 5.87
200 201 1.375523 GGTCTGAAATGGGTCGCGT 60.376 57.895 5.77 0.00 0.00 6.01
201 202 0.108520 GGTCTGAAATGGGTCGCGTA 60.109 55.000 5.77 0.00 0.00 4.42
202 203 0.997196 GTCTGAAATGGGTCGCGTAC 59.003 55.000 5.77 2.75 0.00 3.67
203 204 0.457166 TCTGAAATGGGTCGCGTACG 60.457 55.000 11.84 11.84 42.01 3.67
204 205 1.418342 CTGAAATGGGTCGCGTACGG 61.418 60.000 18.39 7.41 40.63 4.02
205 206 1.153784 GAAATGGGTCGCGTACGGA 60.154 57.895 18.39 9.82 40.63 4.69
206 207 1.416050 GAAATGGGTCGCGTACGGAC 61.416 60.000 18.39 20.26 40.63 4.79
207 208 2.157305 AAATGGGTCGCGTACGGACA 62.157 55.000 26.90 15.07 40.63 4.02
208 209 2.157305 AATGGGTCGCGTACGGACAA 62.157 55.000 26.90 19.03 40.63 3.18
209 210 2.049248 GGGTCGCGTACGGACAAA 60.049 61.111 26.90 1.45 40.63 2.83
210 211 1.664333 GGGTCGCGTACGGACAAAA 60.664 57.895 26.90 0.38 40.63 2.44
211 212 1.220817 GGGTCGCGTACGGACAAAAA 61.221 55.000 26.90 0.00 40.63 1.94
212 213 0.162294 GGTCGCGTACGGACAAAAAG 59.838 55.000 26.90 0.00 40.63 2.27
213 214 0.449993 GTCGCGTACGGACAAAAAGC 60.450 55.000 23.38 3.42 40.63 3.51
214 215 1.506277 CGCGTACGGACAAAAAGCG 60.506 57.895 18.39 2.64 40.14 4.68
215 216 1.154543 GCGTACGGACAAAAAGCGG 60.155 57.895 18.39 0.00 0.00 5.52
216 217 1.559149 GCGTACGGACAAAAAGCGGA 61.559 55.000 18.39 0.00 0.00 5.54
217 218 0.162294 CGTACGGACAAAAAGCGGAC 59.838 55.000 7.57 0.00 0.00 4.79
218 219 0.162294 GTACGGACAAAAAGCGGACG 59.838 55.000 0.00 0.00 0.00 4.79
219 220 0.249405 TACGGACAAAAAGCGGACGT 60.249 50.000 0.00 0.00 36.93 4.34
220 221 1.091197 ACGGACAAAAAGCGGACGTT 61.091 50.000 0.00 0.00 0.00 3.99
221 222 0.656205 CGGACAAAAAGCGGACGTTG 60.656 55.000 0.00 0.00 0.00 4.10
222 223 0.317519 GGACAAAAAGCGGACGTTGG 60.318 55.000 0.00 0.00 0.00 3.77
223 224 0.379316 GACAAAAAGCGGACGTTGGT 59.621 50.000 0.00 0.00 0.00 3.67
224 225 0.812549 ACAAAAAGCGGACGTTGGTT 59.187 45.000 0.00 0.00 0.00 3.67
225 226 1.202211 ACAAAAAGCGGACGTTGGTTC 60.202 47.619 6.64 0.00 0.00 3.62
226 227 1.096416 AAAAAGCGGACGTTGGTTCA 58.904 45.000 6.64 0.00 0.00 3.18
227 228 1.314730 AAAAGCGGACGTTGGTTCAT 58.685 45.000 6.64 0.00 0.00 2.57
228 229 1.314730 AAAGCGGACGTTGGTTCATT 58.685 45.000 6.64 0.00 0.00 2.57
229 230 1.314730 AAGCGGACGTTGGTTCATTT 58.685 45.000 0.00 0.00 0.00 2.32
230 231 0.591170 AGCGGACGTTGGTTCATTTG 59.409 50.000 0.00 0.00 0.00 2.32
231 232 1.001745 GCGGACGTTGGTTCATTTGC 61.002 55.000 0.00 0.00 0.00 3.68
232 233 0.724453 CGGACGTTGGTTCATTTGCG 60.724 55.000 0.00 0.00 0.00 4.85
233 234 0.309612 GGACGTTGGTTCATTTGCGT 59.690 50.000 0.00 0.00 35.20 5.24
234 235 1.662026 GGACGTTGGTTCATTTGCGTC 60.662 52.381 0.00 0.00 45.13 5.19
235 236 0.041663 ACGTTGGTTCATTTGCGTCG 60.042 50.000 0.00 0.00 0.00 5.12
236 237 0.724453 CGTTGGTTCATTTGCGTCGG 60.724 55.000 0.00 0.00 0.00 4.79
237 238 1.001745 GTTGGTTCATTTGCGTCGGC 61.002 55.000 0.00 0.00 40.52 5.54
238 239 2.202298 GGTTCATTTGCGTCGGCG 60.202 61.111 4.29 4.29 44.10 6.46
253 254 3.660111 GCGCGTTGGACCAGCTTT 61.660 61.111 8.43 0.00 0.00 3.51
254 255 3.030652 CGCGTTGGACCAGCTTTT 58.969 55.556 6.77 0.00 0.00 2.27
255 256 1.847890 GCGCGTTGGACCAGCTTTTA 61.848 55.000 8.43 0.00 0.00 1.52
256 257 0.802494 CGCGTTGGACCAGCTTTTAT 59.198 50.000 6.77 0.00 0.00 1.40
257 258 2.004017 CGCGTTGGACCAGCTTTTATA 58.996 47.619 6.77 0.00 0.00 0.98
258 259 2.612212 CGCGTTGGACCAGCTTTTATAT 59.388 45.455 6.77 0.00 0.00 0.86
259 260 3.064820 CGCGTTGGACCAGCTTTTATATT 59.935 43.478 6.77 0.00 0.00 1.28
260 261 4.598062 GCGTTGGACCAGCTTTTATATTC 58.402 43.478 6.77 0.00 0.00 1.75
261 262 4.785341 GCGTTGGACCAGCTTTTATATTCG 60.785 45.833 6.77 0.00 0.00 3.34
262 263 4.331717 CGTTGGACCAGCTTTTATATTCGT 59.668 41.667 6.77 0.00 0.00 3.85
263 264 5.163794 CGTTGGACCAGCTTTTATATTCGTT 60.164 40.000 6.77 0.00 0.00 3.85
264 265 6.617879 GTTGGACCAGCTTTTATATTCGTTT 58.382 36.000 0.22 0.00 0.00 3.60
265 266 6.431198 TGGACCAGCTTTTATATTCGTTTC 57.569 37.500 0.00 0.00 0.00 2.78
266 267 5.064198 TGGACCAGCTTTTATATTCGTTTCG 59.936 40.000 0.00 0.00 0.00 3.46
267 268 5.292589 GGACCAGCTTTTATATTCGTTTCGA 59.707 40.000 0.00 0.00 0.00 3.71
268 269 6.103222 ACCAGCTTTTATATTCGTTTCGAC 57.897 37.500 0.00 0.00 34.89 4.20
269 270 5.640357 ACCAGCTTTTATATTCGTTTCGACA 59.360 36.000 0.00 0.00 34.89 4.35
270 271 5.957796 CCAGCTTTTATATTCGTTTCGACAC 59.042 40.000 0.00 0.00 34.89 3.67
271 272 6.401688 CCAGCTTTTATATTCGTTTCGACACA 60.402 38.462 2.18 0.00 34.89 3.72
272 273 7.012943 CAGCTTTTATATTCGTTTCGACACAA 58.987 34.615 2.18 0.00 34.89 3.33
273 274 7.532546 CAGCTTTTATATTCGTTTCGACACAAA 59.467 33.333 2.18 0.00 34.89 2.83
274 275 7.532884 AGCTTTTATATTCGTTTCGACACAAAC 59.467 33.333 2.18 0.00 34.89 2.93
279 280 3.812097 GTTTCGACACAAACGGACC 57.188 52.632 0.00 0.00 0.00 4.46
280 281 0.042794 GTTTCGACACAAACGGACCG 60.043 55.000 13.61 13.61 0.00 4.79
281 282 0.179116 TTTCGACACAAACGGACCGA 60.179 50.000 23.38 0.00 0.00 4.69
282 283 0.032403 TTCGACACAAACGGACCGAT 59.968 50.000 23.38 5.64 0.00 4.18
283 284 0.387622 TCGACACAAACGGACCGATC 60.388 55.000 23.38 6.89 0.00 3.69
284 285 0.665068 CGACACAAACGGACCGATCA 60.665 55.000 23.38 0.00 0.00 2.92
285 286 1.068474 GACACAAACGGACCGATCAG 58.932 55.000 23.38 7.96 0.00 2.90
286 287 0.391597 ACACAAACGGACCGATCAGT 59.608 50.000 23.38 8.65 34.38 3.41
287 288 1.202604 ACACAAACGGACCGATCAGTT 60.203 47.619 23.38 0.00 44.00 3.16
290 291 3.226884 AACGGACCGATCAGTTTGG 57.773 52.632 23.38 0.00 39.87 3.28
291 292 0.321298 AACGGACCGATCAGTTTGGG 60.321 55.000 23.38 0.00 39.87 4.12
292 293 1.295423 CGGACCGATCAGTTTGGGT 59.705 57.895 8.64 0.00 32.37 4.51
293 294 0.321298 CGGACCGATCAGTTTGGGTT 60.321 55.000 8.64 0.00 32.37 4.11
294 295 1.066716 CGGACCGATCAGTTTGGGTTA 60.067 52.381 8.64 0.00 32.37 2.85
295 296 2.629051 GGACCGATCAGTTTGGGTTAG 58.371 52.381 0.00 0.00 32.37 2.34
296 297 2.235402 GGACCGATCAGTTTGGGTTAGA 59.765 50.000 0.00 0.00 32.37 2.10
297 298 3.307199 GGACCGATCAGTTTGGGTTAGAA 60.307 47.826 0.00 0.00 32.37 2.10
298 299 3.933332 GACCGATCAGTTTGGGTTAGAAG 59.067 47.826 0.00 0.00 32.37 2.85
299 300 3.326880 ACCGATCAGTTTGGGTTAGAAGT 59.673 43.478 0.00 0.00 32.37 3.01
300 301 4.202430 ACCGATCAGTTTGGGTTAGAAGTT 60.202 41.667 0.00 0.00 32.37 2.66
301 302 5.012354 ACCGATCAGTTTGGGTTAGAAGTTA 59.988 40.000 0.00 0.00 32.37 2.24
302 303 5.581085 CCGATCAGTTTGGGTTAGAAGTTAG 59.419 44.000 0.00 0.00 0.00 2.34
303 304 6.164176 CGATCAGTTTGGGTTAGAAGTTAGT 58.836 40.000 0.00 0.00 0.00 2.24
304 305 6.310711 CGATCAGTTTGGGTTAGAAGTTAGTC 59.689 42.308 0.00 0.00 0.00 2.59
305 306 6.742559 TCAGTTTGGGTTAGAAGTTAGTCT 57.257 37.500 0.00 0.00 0.00 3.24
306 307 7.133133 TCAGTTTGGGTTAGAAGTTAGTCTT 57.867 36.000 0.00 0.00 39.32 3.01
307 308 8.253867 TCAGTTTGGGTTAGAAGTTAGTCTTA 57.746 34.615 0.00 0.00 36.40 2.10
308 309 8.707449 TCAGTTTGGGTTAGAAGTTAGTCTTAA 58.293 33.333 0.00 0.00 36.40 1.85
309 310 9.333724 CAGTTTGGGTTAGAAGTTAGTCTTAAA 57.666 33.333 0.00 0.00 36.40 1.52
310 311 9.334947 AGTTTGGGTTAGAAGTTAGTCTTAAAC 57.665 33.333 0.00 0.00 36.40 2.01
311 312 9.112725 GTTTGGGTTAGAAGTTAGTCTTAAACA 57.887 33.333 0.00 0.00 35.54 2.83
312 313 8.667076 TTGGGTTAGAAGTTAGTCTTAAACAC 57.333 34.615 0.00 0.00 36.69 3.32
313 314 8.026396 TGGGTTAGAAGTTAGTCTTAAACACT 57.974 34.615 0.00 0.00 36.90 3.55
314 315 9.146586 TGGGTTAGAAGTTAGTCTTAAACACTA 57.853 33.333 0.00 0.00 36.90 2.74
322 323 9.915629 AAGTTAGTCTTAAACACTATCACTCTG 57.084 33.333 0.00 0.00 34.23 3.35
323 324 8.030106 AGTTAGTCTTAAACACTATCACTCTGC 58.970 37.037 0.00 0.00 0.00 4.26
324 325 6.346477 AGTCTTAAACACTATCACTCTGCA 57.654 37.500 0.00 0.00 0.00 4.41
325 326 6.159988 AGTCTTAAACACTATCACTCTGCAC 58.840 40.000 0.00 0.00 0.00 4.57
326 327 5.348997 GTCTTAAACACTATCACTCTGCACC 59.651 44.000 0.00 0.00 0.00 5.01
327 328 5.246203 TCTTAAACACTATCACTCTGCACCT 59.754 40.000 0.00 0.00 0.00 4.00
328 329 6.436218 TCTTAAACACTATCACTCTGCACCTA 59.564 38.462 0.00 0.00 0.00 3.08
329 330 5.683876 AAACACTATCACTCTGCACCTAT 57.316 39.130 0.00 0.00 0.00 2.57
330 331 5.683876 AACACTATCACTCTGCACCTATT 57.316 39.130 0.00 0.00 0.00 1.73
331 332 5.683876 ACACTATCACTCTGCACCTATTT 57.316 39.130 0.00 0.00 0.00 1.40
332 333 5.423015 ACACTATCACTCTGCACCTATTTG 58.577 41.667 0.00 0.00 0.00 2.32
333 334 5.046304 ACACTATCACTCTGCACCTATTTGT 60.046 40.000 0.00 0.00 0.00 2.83
334 335 5.521735 CACTATCACTCTGCACCTATTTGTC 59.478 44.000 0.00 0.00 0.00 3.18
335 336 4.558226 ATCACTCTGCACCTATTTGTCA 57.442 40.909 0.00 0.00 0.00 3.58
336 337 4.558226 TCACTCTGCACCTATTTGTCAT 57.442 40.909 0.00 0.00 0.00 3.06
337 338 4.256110 TCACTCTGCACCTATTTGTCATG 58.744 43.478 0.00 0.00 0.00 3.07
338 339 4.005650 CACTCTGCACCTATTTGTCATGT 58.994 43.478 0.00 0.00 0.00 3.21
339 340 4.093998 CACTCTGCACCTATTTGTCATGTC 59.906 45.833 0.00 0.00 0.00 3.06
340 341 3.609853 TCTGCACCTATTTGTCATGTCC 58.390 45.455 0.00 0.00 0.00 4.02
341 342 3.008923 TCTGCACCTATTTGTCATGTCCA 59.991 43.478 0.00 0.00 0.00 4.02
342 343 3.081061 TGCACCTATTTGTCATGTCCAC 58.919 45.455 0.00 0.00 0.00 4.02
343 344 3.081061 GCACCTATTTGTCATGTCCACA 58.919 45.455 0.00 0.00 0.00 4.17
344 345 3.696051 GCACCTATTTGTCATGTCCACAT 59.304 43.478 0.00 0.00 36.96 3.21
345 346 4.201950 GCACCTATTTGTCATGTCCACATC 60.202 45.833 0.00 0.00 33.61 3.06
346 347 4.336433 CACCTATTTGTCATGTCCACATCC 59.664 45.833 0.00 0.00 33.61 3.51
347 348 4.018506 ACCTATTTGTCATGTCCACATCCA 60.019 41.667 0.00 0.00 33.61 3.41
348 349 4.577693 CCTATTTGTCATGTCCACATCCAG 59.422 45.833 0.00 0.00 33.61 3.86
349 350 2.495155 TTGTCATGTCCACATCCAGG 57.505 50.000 0.00 0.00 33.61 4.45
350 351 1.361204 TGTCATGTCCACATCCAGGT 58.639 50.000 0.00 0.00 33.61 4.00
351 352 1.278985 TGTCATGTCCACATCCAGGTC 59.721 52.381 0.00 0.00 33.61 3.85
352 353 0.911769 TCATGTCCACATCCAGGTCC 59.088 55.000 0.00 0.00 33.61 4.46
353 354 0.462581 CATGTCCACATCCAGGTCCG 60.463 60.000 0.00 0.00 33.61 4.79
354 355 1.626356 ATGTCCACATCCAGGTCCGG 61.626 60.000 0.00 0.00 28.78 5.14
355 356 2.687200 TCCACATCCAGGTCCGGG 60.687 66.667 0.00 0.71 0.00 5.73
356 357 4.489771 CCACATCCAGGTCCGGGC 62.490 72.222 0.00 0.00 0.00 6.13
357 358 4.489771 CACATCCAGGTCCGGGCC 62.490 72.222 20.43 20.43 0.00 5.80
363 364 4.047125 CAGGTCCGGGCCCACATT 62.047 66.667 24.89 0.00 0.00 2.71
364 365 2.285818 AGGTCCGGGCCCACATTA 60.286 61.111 24.89 0.00 0.00 1.90
365 366 1.926489 AGGTCCGGGCCCACATTAA 60.926 57.895 24.89 0.00 0.00 1.40
366 367 1.751544 GGTCCGGGCCCACATTAAC 60.752 63.158 24.92 9.51 0.00 2.01
367 368 1.751544 GTCCGGGCCCACATTAACC 60.752 63.158 24.92 0.00 0.00 2.85
368 369 2.441348 CCGGGCCCACATTAACCC 60.441 66.667 24.92 0.00 39.12 4.11
369 370 2.357056 CGGGCCCACATTAACCCA 59.643 61.111 24.92 0.00 42.97 4.51
370 371 1.752694 CGGGCCCACATTAACCCAG 60.753 63.158 24.92 0.00 42.97 4.45
371 372 2.058001 GGGCCCACATTAACCCAGC 61.058 63.158 19.95 0.00 42.33 4.85
372 373 1.304879 GGCCCACATTAACCCAGCA 60.305 57.895 0.00 0.00 0.00 4.41
373 374 1.322538 GGCCCACATTAACCCAGCAG 61.323 60.000 0.00 0.00 0.00 4.24
374 375 1.322538 GCCCACATTAACCCAGCAGG 61.323 60.000 0.00 0.00 43.78 4.85
387 388 4.285851 GCAGGTAGCACAGGACAC 57.714 61.111 0.00 0.00 44.79 3.67
388 389 1.376037 GCAGGTAGCACAGGACACC 60.376 63.158 0.00 0.00 44.79 4.16
389 390 1.079819 CAGGTAGCACAGGACACCG 60.080 63.158 0.00 0.00 36.14 4.94
390 391 2.264794 GGTAGCACAGGACACCGG 59.735 66.667 0.00 0.00 0.00 5.28
391 392 2.264794 GTAGCACAGGACACCGGG 59.735 66.667 6.32 0.00 0.00 5.73
392 393 2.203728 TAGCACAGGACACCGGGT 60.204 61.111 6.32 0.00 0.00 5.28
393 394 1.077086 TAGCACAGGACACCGGGTA 59.923 57.895 6.32 0.00 0.00 3.69
394 395 0.542467 TAGCACAGGACACCGGGTAA 60.542 55.000 6.32 0.00 0.00 2.85
395 396 1.375523 GCACAGGACACCGGGTAAG 60.376 63.158 6.32 0.00 0.00 2.34
396 397 1.823169 GCACAGGACACCGGGTAAGA 61.823 60.000 6.32 0.00 0.00 2.10
397 398 0.682852 CACAGGACACCGGGTAAGAA 59.317 55.000 6.32 0.00 0.00 2.52
398 399 1.071071 CACAGGACACCGGGTAAGAAA 59.929 52.381 6.32 0.00 0.00 2.52
399 400 1.982958 ACAGGACACCGGGTAAGAAAT 59.017 47.619 6.32 0.00 0.00 2.17
400 401 2.027469 ACAGGACACCGGGTAAGAAATC 60.027 50.000 6.32 0.00 0.00 2.17
401 402 1.558294 AGGACACCGGGTAAGAAATCC 59.442 52.381 6.32 0.68 0.00 3.01
402 403 1.648504 GACACCGGGTAAGAAATCCG 58.351 55.000 6.32 0.00 43.05 4.18
403 404 0.392060 ACACCGGGTAAGAAATCCGC 60.392 55.000 6.32 0.00 42.18 5.54
404 405 0.107848 CACCGGGTAAGAAATCCGCT 60.108 55.000 6.32 0.00 42.18 5.52
405 406 0.616891 ACCGGGTAAGAAATCCGCTT 59.383 50.000 6.32 0.00 42.18 4.68
406 407 1.832998 ACCGGGTAAGAAATCCGCTTA 59.167 47.619 6.32 0.00 42.18 3.09
407 408 2.207590 CCGGGTAAGAAATCCGCTTAC 58.792 52.381 0.00 0.00 44.28 2.34
443 445 7.773690 ACCTACTAATAAACCAGGTATTGCTTG 59.226 37.037 0.00 0.00 37.85 4.01
501 503 5.716703 CCCTCAATTTACAGGAAATCAACCT 59.283 40.000 0.00 0.00 36.71 3.50
606 609 3.780850 TCCTTTCCTTCCTCTTATCCACC 59.219 47.826 0.00 0.00 0.00 4.61
885 942 1.741770 GCCTCTCCGTGCGAACAAT 60.742 57.895 0.00 0.00 0.00 2.71
1054 1112 3.528370 CCTCGTCTACCTGCGGGG 61.528 72.222 18.00 5.11 42.68 5.73
1297 1355 4.329545 GCTCCGTGCACAAGGGGA 62.330 66.667 18.64 13.95 42.31 4.81
3474 3625 4.404073 ACAACCCATTTAACTCTGCAACAA 59.596 37.500 0.00 0.00 0.00 2.83
3507 3658 9.664332 AAATATATCTGTAAGCTTGCATAGGAG 57.336 33.333 17.94 6.07 0.00 3.69
3691 3847 5.643379 TTCCTGCAATTGATAACTCAACC 57.357 39.130 10.34 0.00 43.92 3.77
3757 3913 5.658634 AGCTGAGGTGAATTCTATGACAGTA 59.341 40.000 7.05 0.00 0.00 2.74
3844 4001 4.892934 TCCTGGTCTTGCTTTTATTGTTGT 59.107 37.500 0.00 0.00 0.00 3.32
3879 4036 4.207891 TCTCCCAGTAGATTTGTTCAGC 57.792 45.455 0.00 0.00 0.00 4.26
4136 4387 7.201565 GCATACAAAGATAGAACAAGAGTCACC 60.202 40.741 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 0.465097 CAGCTGCCACCCTATTCTGG 60.465 60.000 0.00 0.00 0.00 3.86
6 7 1.099879 GCAGCTGCCACCCTATTCTG 61.100 60.000 28.76 0.00 34.31 3.02
7 8 1.225704 GCAGCTGCCACCCTATTCT 59.774 57.895 28.76 0.00 34.31 2.40
8 9 0.680921 TTGCAGCTGCCACCCTATTC 60.681 55.000 34.64 4.94 41.18 1.75
9 10 0.032813 ATTGCAGCTGCCACCCTATT 60.033 50.000 34.64 9.48 41.18 1.73
10 11 0.754217 CATTGCAGCTGCCACCCTAT 60.754 55.000 34.64 15.35 41.18 2.57
11 12 1.378911 CATTGCAGCTGCCACCCTA 60.379 57.895 34.64 13.43 41.18 3.53
12 13 2.678934 CATTGCAGCTGCCACCCT 60.679 61.111 34.64 12.54 41.18 4.34
13 14 3.766691 CCATTGCAGCTGCCACCC 61.767 66.667 34.64 8.86 41.18 4.61
14 15 3.766691 CCCATTGCAGCTGCCACC 61.767 66.667 34.64 9.27 41.18 4.61
15 16 2.993264 ACCCATTGCAGCTGCCAC 60.993 61.111 34.64 9.66 41.18 5.01
16 17 2.992689 CACCCATTGCAGCTGCCA 60.993 61.111 34.64 25.80 41.18 4.92
17 18 3.766691 CCACCCATTGCAGCTGCC 61.767 66.667 34.64 17.82 41.18 4.85
18 19 4.446413 GCCACCCATTGCAGCTGC 62.446 66.667 31.89 31.89 42.50 5.25
19 20 4.124351 CGCCACCCATTGCAGCTG 62.124 66.667 10.11 10.11 0.00 4.24
41 42 3.663176 CAACGGCCAGCACACCTG 61.663 66.667 2.24 0.00 41.41 4.00
42 43 3.196207 ATCAACGGCCAGCACACCT 62.196 57.895 2.24 0.00 0.00 4.00
43 44 2.672996 ATCAACGGCCAGCACACC 60.673 61.111 2.24 0.00 0.00 4.16
44 45 2.562912 CATCAACGGCCAGCACAC 59.437 61.111 2.24 0.00 0.00 3.82
45 46 2.672651 CCATCAACGGCCAGCACA 60.673 61.111 2.24 0.00 0.00 4.57
46 47 3.443045 CCCATCAACGGCCAGCAC 61.443 66.667 2.24 0.00 0.00 4.40
47 48 3.626996 CTCCCATCAACGGCCAGCA 62.627 63.158 2.24 0.00 0.00 4.41
48 49 2.825836 CTCCCATCAACGGCCAGC 60.826 66.667 2.24 0.00 0.00 4.85
49 50 2.124570 CCTCCCATCAACGGCCAG 60.125 66.667 2.24 0.00 0.00 4.85
50 51 2.196997 CTTCCTCCCATCAACGGCCA 62.197 60.000 2.24 0.00 0.00 5.36
51 52 1.452108 CTTCCTCCCATCAACGGCC 60.452 63.158 0.00 0.00 0.00 6.13
52 53 1.452108 CCTTCCTCCCATCAACGGC 60.452 63.158 0.00 0.00 0.00 5.68
53 54 1.224592 CCCTTCCTCCCATCAACGG 59.775 63.158 0.00 0.00 0.00 4.44
54 55 1.224592 CCCCTTCCTCCCATCAACG 59.775 63.158 0.00 0.00 0.00 4.10
55 56 1.076705 GCCCCTTCCTCCCATCAAC 60.077 63.158 0.00 0.00 0.00 3.18
56 57 1.145900 TTGCCCCTTCCTCCCATCAA 61.146 55.000 0.00 0.00 0.00 2.57
57 58 0.925720 ATTGCCCCTTCCTCCCATCA 60.926 55.000 0.00 0.00 0.00 3.07
58 59 0.468771 CATTGCCCCTTCCTCCCATC 60.469 60.000 0.00 0.00 0.00 3.51
59 60 1.622499 CATTGCCCCTTCCTCCCAT 59.378 57.895 0.00 0.00 0.00 4.00
60 61 2.625460 CCATTGCCCCTTCCTCCCA 61.625 63.158 0.00 0.00 0.00 4.37
61 62 2.280079 CCATTGCCCCTTCCTCCC 59.720 66.667 0.00 0.00 0.00 4.30
62 63 2.442830 GCCATTGCCCCTTCCTCC 60.443 66.667 0.00 0.00 0.00 4.30
78 79 2.672996 AGTCGGTGGCACATTGGC 60.673 61.111 20.82 10.05 44.52 4.52
79 80 2.334946 CCAGTCGGTGGCACATTGG 61.335 63.158 20.82 15.80 44.52 3.16
80 81 3.266964 CCAGTCGGTGGCACATTG 58.733 61.111 20.82 10.91 44.52 2.82
103 104 1.076412 TTGTTCTTGTGGCCTGCCA 60.076 52.632 6.80 6.80 45.02 4.92
104 105 1.662044 CTTGTTCTTGTGGCCTGCC 59.338 57.895 3.32 0.00 0.00 4.85
105 106 0.823356 TCCTTGTTCTTGTGGCCTGC 60.823 55.000 3.32 0.00 0.00 4.85
106 107 1.915141 ATCCTTGTTCTTGTGGCCTG 58.085 50.000 3.32 0.00 0.00 4.85
107 108 2.025887 CCTATCCTTGTTCTTGTGGCCT 60.026 50.000 3.32 0.00 0.00 5.19
108 109 2.369394 CCTATCCTTGTTCTTGTGGCC 58.631 52.381 0.00 0.00 0.00 5.36
109 110 1.745653 GCCTATCCTTGTTCTTGTGGC 59.254 52.381 0.00 0.00 0.00 5.01
110 111 2.009774 CGCCTATCCTTGTTCTTGTGG 58.990 52.381 0.00 0.00 0.00 4.17
111 112 2.673368 GACGCCTATCCTTGTTCTTGTG 59.327 50.000 0.00 0.00 0.00 3.33
112 113 2.674177 CGACGCCTATCCTTGTTCTTGT 60.674 50.000 0.00 0.00 0.00 3.16
113 114 1.927174 CGACGCCTATCCTTGTTCTTG 59.073 52.381 0.00 0.00 0.00 3.02
114 115 1.739371 GCGACGCCTATCCTTGTTCTT 60.739 52.381 9.14 0.00 0.00 2.52
115 116 0.179108 GCGACGCCTATCCTTGTTCT 60.179 55.000 9.14 0.00 0.00 3.01
116 117 0.459585 TGCGACGCCTATCCTTGTTC 60.460 55.000 18.69 0.00 0.00 3.18
117 118 0.739813 GTGCGACGCCTATCCTTGTT 60.740 55.000 18.69 0.00 0.00 2.83
118 119 1.153628 GTGCGACGCCTATCCTTGT 60.154 57.895 18.69 0.00 0.00 3.16
119 120 2.230940 CGTGCGACGCCTATCCTTG 61.231 63.158 18.69 0.00 33.65 3.61
120 121 2.104331 CGTGCGACGCCTATCCTT 59.896 61.111 18.69 0.00 33.65 3.36
137 138 4.072088 CGGAAACACAGCGGACGC 62.072 66.667 8.91 8.91 42.33 5.19
138 139 2.660552 ACGGAAACACAGCGGACG 60.661 61.111 0.00 0.00 0.00 4.79
139 140 2.935955 CACGGAAACACAGCGGAC 59.064 61.111 0.00 0.00 0.00 4.79
140 141 2.970324 GCACGGAAACACAGCGGA 60.970 61.111 0.00 0.00 0.00 5.54
141 142 4.025401 GGCACGGAAACACAGCGG 62.025 66.667 0.00 0.00 0.00 5.52
154 155 0.027586 GAGTGTGTTTGTGTCGGCAC 59.972 55.000 14.58 14.58 45.44 5.01
155 156 1.092921 GGAGTGTGTTTGTGTCGGCA 61.093 55.000 0.00 0.00 0.00 5.69
156 157 1.092921 TGGAGTGTGTTTGTGTCGGC 61.093 55.000 0.00 0.00 0.00 5.54
157 158 1.374560 TTGGAGTGTGTTTGTGTCGG 58.625 50.000 0.00 0.00 0.00 4.79
158 159 3.691049 ATTTGGAGTGTGTTTGTGTCG 57.309 42.857 0.00 0.00 0.00 4.35
159 160 5.701029 CAAATTTGGAGTGTGTTTGTGTC 57.299 39.130 10.49 0.00 0.00 3.67
174 175 4.568956 GACCCATTTCAGACCCAAATTTG 58.431 43.478 11.40 11.40 0.00 2.32
175 176 3.258123 CGACCCATTTCAGACCCAAATTT 59.742 43.478 0.00 0.00 0.00 1.82
176 177 2.825532 CGACCCATTTCAGACCCAAATT 59.174 45.455 0.00 0.00 0.00 1.82
177 178 2.446435 CGACCCATTTCAGACCCAAAT 58.554 47.619 0.00 0.00 0.00 2.32
178 179 1.904287 CGACCCATTTCAGACCCAAA 58.096 50.000 0.00 0.00 0.00 3.28
179 180 0.608035 GCGACCCATTTCAGACCCAA 60.608 55.000 0.00 0.00 0.00 4.12
180 181 1.002624 GCGACCCATTTCAGACCCA 60.003 57.895 0.00 0.00 0.00 4.51
181 182 2.106683 CGCGACCCATTTCAGACCC 61.107 63.158 0.00 0.00 0.00 4.46
182 183 0.108520 TACGCGACCCATTTCAGACC 60.109 55.000 15.93 0.00 0.00 3.85
183 184 0.997196 GTACGCGACCCATTTCAGAC 59.003 55.000 15.93 0.00 0.00 3.51
184 185 0.457166 CGTACGCGACCCATTTCAGA 60.457 55.000 15.93 0.00 41.33 3.27
185 186 1.418342 CCGTACGCGACCCATTTCAG 61.418 60.000 15.93 0.00 41.33 3.02
186 187 1.446445 CCGTACGCGACCCATTTCA 60.446 57.895 15.93 0.00 41.33 2.69
187 188 1.153784 TCCGTACGCGACCCATTTC 60.154 57.895 15.93 0.00 41.33 2.17
188 189 1.446618 GTCCGTACGCGACCCATTT 60.447 57.895 15.93 0.00 41.33 2.32
189 190 2.157305 TTGTCCGTACGCGACCCATT 62.157 55.000 24.51 0.00 41.33 3.16
190 191 2.157305 TTTGTCCGTACGCGACCCAT 62.157 55.000 24.51 0.00 41.33 4.00
191 192 2.360949 TTTTGTCCGTACGCGACCCA 62.361 55.000 24.51 14.15 41.33 4.51
192 193 1.220817 TTTTTGTCCGTACGCGACCC 61.221 55.000 24.51 9.61 41.33 4.46
193 194 0.162294 CTTTTTGTCCGTACGCGACC 59.838 55.000 24.51 0.41 41.33 4.79
194 195 0.449993 GCTTTTTGTCCGTACGCGAC 60.450 55.000 15.93 22.25 41.33 5.19
195 196 1.854664 GCTTTTTGTCCGTACGCGA 59.145 52.632 15.93 6.03 41.33 5.87
196 197 1.506277 CGCTTTTTGTCCGTACGCG 60.506 57.895 10.49 3.53 37.95 6.01
197 198 1.154543 CCGCTTTTTGTCCGTACGC 60.155 57.895 10.49 0.00 0.00 4.42
198 199 0.162294 GTCCGCTTTTTGTCCGTACG 59.838 55.000 8.69 8.69 0.00 3.67
199 200 0.162294 CGTCCGCTTTTTGTCCGTAC 59.838 55.000 0.00 0.00 0.00 3.67
200 201 0.249405 ACGTCCGCTTTTTGTCCGTA 60.249 50.000 0.00 0.00 0.00 4.02
201 202 1.091197 AACGTCCGCTTTTTGTCCGT 61.091 50.000 0.00 0.00 0.00 4.69
202 203 0.656205 CAACGTCCGCTTTTTGTCCG 60.656 55.000 0.00 0.00 0.00 4.79
203 204 0.317519 CCAACGTCCGCTTTTTGTCC 60.318 55.000 0.00 0.00 0.00 4.02
204 205 0.379316 ACCAACGTCCGCTTTTTGTC 59.621 50.000 0.00 0.00 0.00 3.18
205 206 0.812549 AACCAACGTCCGCTTTTTGT 59.187 45.000 0.00 0.00 0.00 2.83
206 207 1.202200 TGAACCAACGTCCGCTTTTTG 60.202 47.619 0.00 0.00 0.00 2.44
207 208 1.096416 TGAACCAACGTCCGCTTTTT 58.904 45.000 0.00 0.00 0.00 1.94
208 209 1.314730 ATGAACCAACGTCCGCTTTT 58.685 45.000 0.00 0.00 0.00 2.27
209 210 1.314730 AATGAACCAACGTCCGCTTT 58.685 45.000 0.00 0.00 0.00 3.51
210 211 1.001815 CAAATGAACCAACGTCCGCTT 60.002 47.619 0.00 0.00 0.00 4.68
211 212 0.591170 CAAATGAACCAACGTCCGCT 59.409 50.000 0.00 0.00 0.00 5.52
212 213 1.001745 GCAAATGAACCAACGTCCGC 61.002 55.000 0.00 0.00 0.00 5.54
213 214 0.724453 CGCAAATGAACCAACGTCCG 60.724 55.000 0.00 0.00 0.00 4.79
214 215 0.309612 ACGCAAATGAACCAACGTCC 59.690 50.000 0.00 0.00 0.00 4.79
215 216 1.670326 GACGCAAATGAACCAACGTC 58.330 50.000 0.00 0.00 42.36 4.34
216 217 0.041663 CGACGCAAATGAACCAACGT 60.042 50.000 0.00 0.00 36.30 3.99
217 218 0.724453 CCGACGCAAATGAACCAACG 60.724 55.000 0.00 0.00 0.00 4.10
218 219 1.001745 GCCGACGCAAATGAACCAAC 61.002 55.000 0.00 0.00 34.03 3.77
219 220 1.284408 GCCGACGCAAATGAACCAA 59.716 52.632 0.00 0.00 34.03 3.67
220 221 2.950673 GCCGACGCAAATGAACCA 59.049 55.556 0.00 0.00 34.03 3.67
221 222 2.202298 CGCCGACGCAAATGAACC 60.202 61.111 0.00 0.00 34.03 3.62
236 237 1.847890 TAAAAGCTGGTCCAACGCGC 61.848 55.000 5.73 0.00 0.00 6.86
237 238 0.802494 ATAAAAGCTGGTCCAACGCG 59.198 50.000 3.53 3.53 0.00 6.01
238 239 4.598062 GAATATAAAAGCTGGTCCAACGC 58.402 43.478 0.00 0.00 0.00 4.84
239 240 4.331717 ACGAATATAAAAGCTGGTCCAACG 59.668 41.667 0.00 0.00 0.00 4.10
240 241 5.813080 ACGAATATAAAAGCTGGTCCAAC 57.187 39.130 0.00 0.00 0.00 3.77
241 242 6.402766 CGAAACGAATATAAAAGCTGGTCCAA 60.403 38.462 0.00 0.00 0.00 3.53
242 243 5.064198 CGAAACGAATATAAAAGCTGGTCCA 59.936 40.000 0.00 0.00 0.00 4.02
243 244 5.292589 TCGAAACGAATATAAAAGCTGGTCC 59.707 40.000 0.00 0.00 31.06 4.46
244 245 6.183324 GTCGAAACGAATATAAAAGCTGGTC 58.817 40.000 0.00 0.00 37.72 4.02
245 246 5.640357 TGTCGAAACGAATATAAAAGCTGGT 59.360 36.000 0.00 0.00 37.72 4.00
246 247 5.957796 GTGTCGAAACGAATATAAAAGCTGG 59.042 40.000 0.00 0.00 37.72 4.85
247 248 6.530567 TGTGTCGAAACGAATATAAAAGCTG 58.469 36.000 0.32 0.00 37.72 4.24
248 249 6.715344 TGTGTCGAAACGAATATAAAAGCT 57.285 33.333 0.32 0.00 37.72 3.74
249 250 7.642242 GTTTGTGTCGAAACGAATATAAAAGC 58.358 34.615 11.63 0.00 37.72 3.51
261 262 0.042794 CGGTCCGTTTGTGTCGAAAC 60.043 55.000 2.08 0.00 33.27 2.78
262 263 0.179116 TCGGTCCGTTTGTGTCGAAA 60.179 50.000 11.88 0.00 0.00 3.46
263 264 0.032403 ATCGGTCCGTTTGTGTCGAA 59.968 50.000 11.88 0.00 0.00 3.71
264 265 0.387622 GATCGGTCCGTTTGTGTCGA 60.388 55.000 11.88 0.00 0.00 4.20
265 266 0.665068 TGATCGGTCCGTTTGTGTCG 60.665 55.000 11.88 0.00 0.00 4.35
266 267 1.068474 CTGATCGGTCCGTTTGTGTC 58.932 55.000 11.88 2.44 0.00 3.67
267 268 0.391597 ACTGATCGGTCCGTTTGTGT 59.608 50.000 11.88 2.78 0.00 3.72
268 269 1.508632 AACTGATCGGTCCGTTTGTG 58.491 50.000 11.88 2.15 28.85 3.33
269 270 1.871039 CAAACTGATCGGTCCGTTTGT 59.129 47.619 27.73 4.76 46.08 2.83
270 271 2.594529 CAAACTGATCGGTCCGTTTG 57.405 50.000 24.86 24.86 46.04 2.93
271 272 1.519408 CCAAACTGATCGGTCCGTTT 58.481 50.000 11.88 11.88 40.84 3.60
272 273 0.321298 CCCAAACTGATCGGTCCGTT 60.321 55.000 11.88 2.07 33.86 4.44
273 274 1.295423 CCCAAACTGATCGGTCCGT 59.705 57.895 11.88 0.00 0.00 4.69
274 275 0.321298 AACCCAAACTGATCGGTCCG 60.321 55.000 7.86 4.39 0.00 4.79
275 276 2.235402 TCTAACCCAAACTGATCGGTCC 59.765 50.000 7.86 0.00 0.00 4.46
276 277 3.604875 TCTAACCCAAACTGATCGGTC 57.395 47.619 7.86 0.00 0.00 4.79
277 278 3.326880 ACTTCTAACCCAAACTGATCGGT 59.673 43.478 0.00 0.00 0.00 4.69
278 279 3.939066 ACTTCTAACCCAAACTGATCGG 58.061 45.455 0.00 0.00 0.00 4.18
279 280 6.164176 ACTAACTTCTAACCCAAACTGATCG 58.836 40.000 0.00 0.00 0.00 3.69
280 281 7.387643 AGACTAACTTCTAACCCAAACTGATC 58.612 38.462 0.00 0.00 0.00 2.92
281 282 7.317722 AGACTAACTTCTAACCCAAACTGAT 57.682 36.000 0.00 0.00 0.00 2.90
282 283 6.742559 AGACTAACTTCTAACCCAAACTGA 57.257 37.500 0.00 0.00 0.00 3.41
283 284 8.897872 TTAAGACTAACTTCTAACCCAAACTG 57.102 34.615 0.00 0.00 39.72 3.16
284 285 9.334947 GTTTAAGACTAACTTCTAACCCAAACT 57.665 33.333 0.00 0.00 39.72 2.66
285 286 9.112725 TGTTTAAGACTAACTTCTAACCCAAAC 57.887 33.333 0.00 0.00 39.72 2.93
286 287 9.112725 GTGTTTAAGACTAACTTCTAACCCAAA 57.887 33.333 0.00 0.00 39.72 3.28
287 288 8.488668 AGTGTTTAAGACTAACTTCTAACCCAA 58.511 33.333 0.00 0.00 39.72 4.12
288 289 8.026396 AGTGTTTAAGACTAACTTCTAACCCA 57.974 34.615 0.00 0.00 39.72 4.51
296 297 9.915629 CAGAGTGATAGTGTTTAAGACTAACTT 57.084 33.333 6.07 0.00 42.04 2.66
297 298 8.030106 GCAGAGTGATAGTGTTTAAGACTAACT 58.970 37.037 6.07 6.25 29.82 2.24
298 299 7.813148 TGCAGAGTGATAGTGTTTAAGACTAAC 59.187 37.037 6.07 4.55 29.82 2.34
299 300 7.813148 GTGCAGAGTGATAGTGTTTAAGACTAA 59.187 37.037 6.07 0.00 29.82 2.24
300 301 7.313646 GTGCAGAGTGATAGTGTTTAAGACTA 58.686 38.462 4.46 4.46 0.00 2.59
301 302 6.159988 GTGCAGAGTGATAGTGTTTAAGACT 58.840 40.000 0.00 0.00 0.00 3.24
302 303 5.348997 GGTGCAGAGTGATAGTGTTTAAGAC 59.651 44.000 0.00 0.00 0.00 3.01
303 304 5.246203 AGGTGCAGAGTGATAGTGTTTAAGA 59.754 40.000 0.00 0.00 0.00 2.10
304 305 5.482908 AGGTGCAGAGTGATAGTGTTTAAG 58.517 41.667 0.00 0.00 0.00 1.85
305 306 5.483685 AGGTGCAGAGTGATAGTGTTTAA 57.516 39.130 0.00 0.00 0.00 1.52
306 307 6.791867 ATAGGTGCAGAGTGATAGTGTTTA 57.208 37.500 0.00 0.00 0.00 2.01
307 308 5.683876 ATAGGTGCAGAGTGATAGTGTTT 57.316 39.130 0.00 0.00 0.00 2.83
308 309 5.683876 AATAGGTGCAGAGTGATAGTGTT 57.316 39.130 0.00 0.00 0.00 3.32
309 310 5.046304 ACAAATAGGTGCAGAGTGATAGTGT 60.046 40.000 0.00 0.00 0.00 3.55
310 311 5.423015 ACAAATAGGTGCAGAGTGATAGTG 58.577 41.667 0.00 0.00 0.00 2.74
311 312 5.187772 TGACAAATAGGTGCAGAGTGATAGT 59.812 40.000 0.00 0.00 0.00 2.12
312 313 5.664457 TGACAAATAGGTGCAGAGTGATAG 58.336 41.667 0.00 0.00 0.00 2.08
313 314 5.675684 TGACAAATAGGTGCAGAGTGATA 57.324 39.130 0.00 0.00 0.00 2.15
314 315 4.558226 TGACAAATAGGTGCAGAGTGAT 57.442 40.909 0.00 0.00 0.00 3.06
315 316 4.256110 CATGACAAATAGGTGCAGAGTGA 58.744 43.478 0.00 0.00 0.00 3.41
316 317 4.005650 ACATGACAAATAGGTGCAGAGTG 58.994 43.478 0.00 0.00 0.00 3.51
317 318 4.256920 GACATGACAAATAGGTGCAGAGT 58.743 43.478 0.00 0.00 0.00 3.24
318 319 3.624861 GGACATGACAAATAGGTGCAGAG 59.375 47.826 0.00 0.00 0.00 3.35
319 320 3.008923 TGGACATGACAAATAGGTGCAGA 59.991 43.478 0.00 0.00 0.00 4.26
320 321 3.127548 GTGGACATGACAAATAGGTGCAG 59.872 47.826 0.00 0.00 30.43 4.41
321 322 3.081061 GTGGACATGACAAATAGGTGCA 58.919 45.455 0.00 0.00 0.00 4.57
322 323 3.081061 TGTGGACATGACAAATAGGTGC 58.919 45.455 0.00 0.00 0.00 5.01
323 324 4.336433 GGATGTGGACATGACAAATAGGTG 59.664 45.833 0.00 0.00 36.57 4.00
324 325 4.018506 TGGATGTGGACATGACAAATAGGT 60.019 41.667 0.00 0.00 36.57 3.08
325 326 4.525996 TGGATGTGGACATGACAAATAGG 58.474 43.478 0.00 0.00 36.57 2.57
326 327 4.577693 CCTGGATGTGGACATGACAAATAG 59.422 45.833 0.00 0.00 36.57 1.73
327 328 4.018506 ACCTGGATGTGGACATGACAAATA 60.019 41.667 0.00 0.00 36.57 1.40
328 329 3.245371 ACCTGGATGTGGACATGACAAAT 60.245 43.478 0.00 0.00 36.57 2.32
329 330 2.108075 ACCTGGATGTGGACATGACAAA 59.892 45.455 0.00 0.00 36.57 2.83
330 331 1.704628 ACCTGGATGTGGACATGACAA 59.295 47.619 0.00 0.00 36.57 3.18
331 332 1.278985 GACCTGGATGTGGACATGACA 59.721 52.381 0.00 0.00 36.57 3.58
332 333 1.407437 GGACCTGGATGTGGACATGAC 60.407 57.143 0.00 0.00 36.57 3.06
333 334 0.911769 GGACCTGGATGTGGACATGA 59.088 55.000 0.00 0.00 36.57 3.07
334 335 0.462581 CGGACCTGGATGTGGACATG 60.463 60.000 0.00 0.00 36.57 3.21
335 336 1.626356 CCGGACCTGGATGTGGACAT 61.626 60.000 0.00 0.00 39.70 3.06
336 337 2.290287 CCGGACCTGGATGTGGACA 61.290 63.158 0.00 0.00 0.00 4.02
337 338 2.584608 CCGGACCTGGATGTGGAC 59.415 66.667 0.00 0.00 0.00 4.02
338 339 2.687200 CCCGGACCTGGATGTGGA 60.687 66.667 0.73 0.00 0.00 4.02
339 340 4.489771 GCCCGGACCTGGATGTGG 62.490 72.222 0.73 0.00 0.00 4.17
340 341 4.489771 GGCCCGGACCTGGATGTG 62.490 72.222 0.73 0.00 0.00 3.21
346 347 2.204865 TTAATGTGGGCCCGGACCTG 62.205 60.000 19.37 0.00 0.00 4.00
347 348 1.926489 TTAATGTGGGCCCGGACCT 60.926 57.895 19.37 0.00 0.00 3.85
348 349 1.751544 GTTAATGTGGGCCCGGACC 60.752 63.158 19.37 0.48 0.00 4.46
349 350 1.751544 GGTTAATGTGGGCCCGGAC 60.752 63.158 19.37 11.80 0.00 4.79
350 351 2.678470 GGTTAATGTGGGCCCGGA 59.322 61.111 19.37 6.06 0.00 5.14
351 352 2.441348 GGGTTAATGTGGGCCCGG 60.441 66.667 19.37 0.00 0.00 5.73
352 353 1.752694 CTGGGTTAATGTGGGCCCG 60.753 63.158 19.37 0.00 43.89 6.13
353 354 2.058001 GCTGGGTTAATGTGGGCCC 61.058 63.158 17.59 17.59 41.42 5.80
354 355 1.304879 TGCTGGGTTAATGTGGGCC 60.305 57.895 0.00 0.00 0.00 5.80
355 356 1.322538 CCTGCTGGGTTAATGTGGGC 61.323 60.000 0.71 0.00 0.00 5.36
356 357 2.886382 CCTGCTGGGTTAATGTGGG 58.114 57.895 0.71 0.00 0.00 4.61
366 367 2.270205 CCTGTGCTACCTGCTGGG 59.730 66.667 14.82 4.64 43.37 4.45
367 368 1.078848 GTCCTGTGCTACCTGCTGG 60.079 63.158 8.29 8.29 43.37 4.85
368 369 0.671781 GTGTCCTGTGCTACCTGCTG 60.672 60.000 0.00 0.00 43.37 4.41
369 370 1.674057 GTGTCCTGTGCTACCTGCT 59.326 57.895 0.00 0.00 43.37 4.24
370 371 1.376037 GGTGTCCTGTGCTACCTGC 60.376 63.158 0.00 0.00 43.25 4.85
371 372 1.079819 CGGTGTCCTGTGCTACCTG 60.080 63.158 0.00 0.00 0.00 4.00
372 373 2.283529 CCGGTGTCCTGTGCTACCT 61.284 63.158 0.00 0.00 0.00 3.08
373 374 2.264794 CCGGTGTCCTGTGCTACC 59.735 66.667 0.00 0.00 0.00 3.18
374 375 1.252904 TACCCGGTGTCCTGTGCTAC 61.253 60.000 0.00 0.00 0.00 3.58
375 376 0.542467 TTACCCGGTGTCCTGTGCTA 60.542 55.000 0.00 0.00 0.00 3.49
376 377 1.827399 CTTACCCGGTGTCCTGTGCT 61.827 60.000 0.00 0.00 0.00 4.40
377 378 1.375523 CTTACCCGGTGTCCTGTGC 60.376 63.158 0.00 0.00 0.00 4.57
378 379 0.682852 TTCTTACCCGGTGTCCTGTG 59.317 55.000 0.00 0.00 0.00 3.66
379 380 1.426751 TTTCTTACCCGGTGTCCTGT 58.573 50.000 0.00 0.00 0.00 4.00
380 381 2.629051 GATTTCTTACCCGGTGTCCTG 58.371 52.381 0.00 0.00 0.00 3.86
381 382 1.558294 GGATTTCTTACCCGGTGTCCT 59.442 52.381 0.00 0.00 0.00 3.85
382 383 1.741394 CGGATTTCTTACCCGGTGTCC 60.741 57.143 0.00 0.00 39.59 4.02
383 384 1.648504 CGGATTTCTTACCCGGTGTC 58.351 55.000 0.00 0.00 39.59 3.67
384 385 0.392060 GCGGATTTCTTACCCGGTGT 60.392 55.000 0.00 0.00 43.17 4.16
385 386 2.390427 GCGGATTTCTTACCCGGTG 58.610 57.895 0.00 0.00 43.17 4.94
386 387 4.948257 GCGGATTTCTTACCCGGT 57.052 55.556 0.00 0.00 43.17 5.28
387 388 2.207590 GTAAGCGGATTTCTTACCCGG 58.792 52.381 0.00 0.00 43.17 5.73
391 392 8.434733 AAAGATAAGGTAAGCGGATTTCTTAC 57.565 34.615 4.76 4.76 43.00 2.34
392 393 9.538508 GTAAAGATAAGGTAAGCGGATTTCTTA 57.461 33.333 4.74 4.74 0.00 2.10
393 394 7.498239 GGTAAAGATAAGGTAAGCGGATTTCTT 59.502 37.037 0.00 0.00 0.00 2.52
394 395 6.990939 GGTAAAGATAAGGTAAGCGGATTTCT 59.009 38.462 0.00 0.00 0.00 2.52
395 396 6.990939 AGGTAAAGATAAGGTAAGCGGATTTC 59.009 38.462 0.00 0.00 0.00 2.17
396 397 6.896883 AGGTAAAGATAAGGTAAGCGGATTT 58.103 36.000 0.00 0.00 0.00 2.17
397 398 6.496144 AGGTAAAGATAAGGTAAGCGGATT 57.504 37.500 0.00 0.00 0.00 3.01
398 399 6.781507 AGTAGGTAAAGATAAGGTAAGCGGAT 59.218 38.462 0.00 0.00 0.00 4.18
399 400 6.131961 AGTAGGTAAAGATAAGGTAAGCGGA 58.868 40.000 0.00 0.00 0.00 5.54
400 401 6.402456 AGTAGGTAAAGATAAGGTAAGCGG 57.598 41.667 0.00 0.00 0.00 5.52
434 436 0.719465 CGGACGACCACAAGCAATAC 59.281 55.000 4.48 0.00 35.59 1.89
443 445 3.489277 AACCACGACGGACGACCAC 62.489 63.158 6.90 0.00 45.77 4.16
536 539 9.893305 CTATAGGGTTTTGTTTGTAAAAGTGAG 57.107 33.333 0.00 0.00 30.79 3.51
1219 1277 4.243008 TTGGGAACGCGTGCTCCA 62.243 61.111 26.63 23.27 32.95 3.86
2281 2384 0.469705 ATTGCCTCCCAAGTTGTGCA 60.470 50.000 1.45 2.61 36.76 4.57
3474 3625 9.057089 GCAAGCTTACAGATATATTTTAGTGGT 57.943 33.333 0.00 0.00 0.00 4.16
3691 3847 4.394729 TGTAGTTACCTCCCTGCAAAAAG 58.605 43.478 0.00 0.00 0.00 2.27
3757 3913 2.846206 TGTGCTCCTATCATCAACCCTT 59.154 45.455 0.00 0.00 0.00 3.95
3844 4001 4.678256 ACTGGGAGATCAGAGAAGTTGTA 58.322 43.478 0.00 0.00 38.11 2.41
3879 4036 0.035439 AAGCCTAATGACCACACCGG 60.035 55.000 0.00 0.00 42.50 5.28
4136 4387 7.290857 TCTGAAAGTTCGAATTCTTAATCCG 57.709 36.000 0.00 0.00 33.76 4.18
4190 4474 1.490490 TCTTTCCTTCCATCCCCATCG 59.510 52.381 0.00 0.00 0.00 3.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.