Multiple sequence alignment - TraesCS5A01G069500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G069500 chr5A 100.000 4104 0 0 1 4104 78156672 78160775 0.000000e+00 7579.0
1 TraesCS5A01G069500 chr5A 98.780 164 2 0 3941 4104 78169274 78169437 4.010000e-75 292.0
2 TraesCS5A01G069500 chr5A 98.193 166 3 0 3939 4104 31460934 31460769 1.440000e-74 291.0
3 TraesCS5A01G069500 chr5A 98.171 164 3 0 3941 4104 31455957 31455794 1.870000e-73 287.0
4 TraesCS5A01G069500 chr5A 92.000 50 4 0 3632 3681 698196039 698195990 2.050000e-08 71.3
5 TraesCS5A01G069500 chr5B 89.218 2801 160 60 749 3508 90507181 90509880 0.000000e+00 3369.0
6 TraesCS5A01G069500 chr5B 90.196 255 19 4 545 799 90506948 90507196 1.100000e-85 327.0
7 TraesCS5A01G069500 chr5B 97.561 164 4 0 3941 4104 534309770 534309607 8.690000e-72 281.0
8 TraesCS5A01G069500 chr5B 85.714 140 20 0 1035 1174 582578481 582578620 9.190000e-32 148.0
9 TraesCS5A01G069500 chr5D 94.118 1734 67 17 1652 3375 82187763 82189471 0.000000e+00 2604.0
10 TraesCS5A01G069500 chr5D 92.168 715 34 8 538 1236 82186651 82187359 0.000000e+00 990.0
11 TraesCS5A01G069500 chr5D 87.857 560 42 11 3394 3940 82189531 82190077 5.790000e-178 634.0
12 TraesCS5A01G069500 chr5D 91.480 446 19 7 5 444 82186211 82186643 2.730000e-166 595.0
13 TraesCS5A01G069500 chr5D 84.197 386 33 17 1267 1649 82187358 82187718 2.350000e-92 350.0
14 TraesCS5A01G069500 chr6B 98.171 164 3 0 3941 4104 687315644 687315807 1.870000e-73 287.0
15 TraesCS5A01G069500 chr6B 97.561 164 4 0 3941 4104 687310668 687310831 8.690000e-72 281.0
16 TraesCS5A01G069500 chr6B 95.745 94 4 0 448 541 534906851 534906758 7.110000e-33 152.0
17 TraesCS5A01G069500 chr4A 98.171 164 3 0 3941 4104 736113786 736113949 1.870000e-73 287.0
18 TraesCS5A01G069500 chr4A 98.171 164 3 0 3941 4104 736118758 736118921 1.870000e-73 287.0
19 TraesCS5A01G069500 chr4A 89.623 106 11 0 1507 1612 544198873 544198978 7.160000e-28 135.0
20 TraesCS5A01G069500 chr4A 93.827 81 5 0 1304 1384 544198796 544198876 5.570000e-24 122.0
21 TraesCS5A01G069500 chr4A 88.136 59 5 1 3627 3683 620504172 620504114 7.360000e-08 69.4
22 TraesCS5A01G069500 chr2B 98.171 164 3 0 3941 4104 532488127 532488290 1.870000e-73 287.0
23 TraesCS5A01G069500 chr2B 94.898 98 5 0 447 544 43285367 43285270 1.980000e-33 154.0
24 TraesCS5A01G069500 chr2B 93.182 44 3 0 1537 1580 610925270 610925313 9.520000e-07 65.8
25 TraesCS5A01G069500 chr7A 98.947 95 0 1 455 548 173487649 173487555 7.060000e-38 169.0
26 TraesCS5A01G069500 chr1A 98.913 92 1 0 450 541 49249744 49249653 9.130000e-37 165.0
27 TraesCS5A01G069500 chr1A 100.000 35 0 0 3627 3661 461031721 461031755 9.520000e-07 65.8
28 TraesCS5A01G069500 chrUn 100.000 86 0 0 456 541 244923812 244923897 4.250000e-35 159.0
29 TraesCS5A01G069500 chrUn 100.000 86 0 0 456 541 287095700 287095785 4.250000e-35 159.0
30 TraesCS5A01G069500 chr7D 95.789 95 4 0 447 541 581296260 581296354 1.980000e-33 154.0
31 TraesCS5A01G069500 chr7D 92.929 99 7 0 442 540 69811202 69811300 1.190000e-30 145.0
32 TraesCS5A01G069500 chr7B 93.939 99 6 0 443 541 624951723 624951821 2.560000e-32 150.0
33 TraesCS5A01G069500 chr4D 89.720 107 11 0 1507 1613 52472640 52472534 1.990000e-28 137.0
34 TraesCS5A01G069500 chr4D 95.062 81 4 0 1304 1384 52472717 52472637 1.200000e-25 128.0
35 TraesCS5A01G069500 chr4B 89.623 106 11 0 1507 1612 76818827 76818722 7.160000e-28 135.0
36 TraesCS5A01G069500 chr4B 93.827 81 5 0 1304 1384 76818904 76818824 5.570000e-24 122.0
37 TraesCS5A01G069500 chr4B 86.792 53 6 1 3632 3683 657476909 657476961 1.590000e-04 58.4
38 TraesCS5A01G069500 chr2D 89.286 84 8 1 1306 1389 640298895 640298813 2.020000e-18 104.0
39 TraesCS5A01G069500 chr2D 93.182 44 3 0 1537 1580 518613678 518613721 9.520000e-07 65.8
40 TraesCS5A01G069500 chr3D 85.714 98 12 2 1298 1393 487807606 487807703 7.260000e-18 102.0
41 TraesCS5A01G069500 chr3B 85.714 98 12 2 1298 1393 650797556 650797653 7.260000e-18 102.0
42 TraesCS5A01G069500 chr3A 85.714 98 12 2 1298 1393 631575988 631576085 7.260000e-18 102.0
43 TraesCS5A01G069500 chr3A 100.000 34 0 0 3627 3660 10152066 10152033 3.420000e-06 63.9
44 TraesCS5A01G069500 chr2A 93.182 44 3 0 1537 1580 662905636 662905679 9.520000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G069500 chr5A 78156672 78160775 4103 False 7579.0 7579 100.000 1 4104 1 chr5A.!!$F1 4103
1 TraesCS5A01G069500 chr5B 90506948 90509880 2932 False 1848.0 3369 89.707 545 3508 2 chr5B.!!$F2 2963
2 TraesCS5A01G069500 chr5D 82186211 82190077 3866 False 1034.6 2604 89.964 5 3940 5 chr5D.!!$F1 3935

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
574 580 0.030908 CCGGTTCCAGCTCGAGATAC 59.969 60.0 18.75 4.89 0.0 2.24 F
1489 1555 0.179018 AACGAGTTCTGCCTTGCCTT 60.179 50.0 0.00 0.00 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1594 1660 0.098376 ATACCTCGTCGACGCTGAAC 59.902 55.0 32.19 0.0 39.60 3.18 R
3406 3584 0.318955 ATCACAAACCAGCTTTGCGC 60.319 50.0 0.00 0.0 42.87 6.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.804151 GCAGAGGTTGCGATGTTTACA 59.196 47.619 0.00 0.00 44.09 2.41
138 141 0.461548 TGCAATCTCGCTCTACCAGG 59.538 55.000 0.00 0.00 0.00 4.45
151 154 2.032620 CTACCAGGGAAGTACGATGCT 58.967 52.381 0.00 0.00 0.00 3.79
168 171 5.056480 CGATGCTAGGAAATGGATGTAACA 58.944 41.667 0.00 0.00 0.00 2.41
170 173 6.205464 CGATGCTAGGAAATGGATGTAACAAT 59.795 38.462 0.00 0.00 0.00 2.71
171 174 7.255242 CGATGCTAGGAAATGGATGTAACAATT 60.255 37.037 0.00 0.00 0.00 2.32
172 175 7.099266 TGCTAGGAAATGGATGTAACAATTG 57.901 36.000 3.24 3.24 0.00 2.32
173 176 6.663093 TGCTAGGAAATGGATGTAACAATTGT 59.337 34.615 4.92 4.92 0.00 2.71
174 177 7.178274 TGCTAGGAAATGGATGTAACAATTGTT 59.822 33.333 25.99 25.99 41.73 2.83
175 178 8.034804 GCTAGGAAATGGATGTAACAATTGTTT 58.965 33.333 27.66 11.31 39.31 2.83
176 179 9.927668 CTAGGAAATGGATGTAACAATTGTTTT 57.072 29.630 27.66 13.79 39.31 2.43
241 247 6.761099 ACTAAGAAGAAGATAGTTGCTCGA 57.239 37.500 0.00 0.00 0.00 4.04
306 312 4.382754 CAGCTTTTAGTCATTTTTGCGTCC 59.617 41.667 0.00 0.00 0.00 4.79
307 313 4.278419 AGCTTTTAGTCATTTTTGCGTCCT 59.722 37.500 0.00 0.00 0.00 3.85
328 334 8.195436 CGTCCTTCACTGATAATCCTTTTACTA 58.805 37.037 0.00 0.00 0.00 1.82
329 335 9.535878 GTCCTTCACTGATAATCCTTTTACTAG 57.464 37.037 0.00 0.00 0.00 2.57
414 420 0.033504 AAACCTGATGCGTGAGACGT 59.966 50.000 0.00 0.00 44.73 4.34
419 425 0.170339 TGATGCGTGAGACGTAGGTG 59.830 55.000 0.00 0.00 44.73 4.00
426 432 1.028330 TGAGACGTAGGTGCCGGTAG 61.028 60.000 1.90 0.00 0.00 3.18
471 477 7.622502 TTAAAAGGTACTCCCTCTGTAAACT 57.377 36.000 0.00 0.00 45.47 2.66
472 478 8.725606 TTAAAAGGTACTCCCTCTGTAAACTA 57.274 34.615 0.00 0.00 45.47 2.24
473 479 7.622502 AAAAGGTACTCCCTCTGTAAACTAA 57.377 36.000 0.00 0.00 45.47 2.24
474 480 7.809880 AAAGGTACTCCCTCTGTAAACTAAT 57.190 36.000 0.00 0.00 45.47 1.73
475 481 8.906238 AAAGGTACTCCCTCTGTAAACTAATA 57.094 34.615 0.00 0.00 45.47 0.98
476 482 9.503369 AAAGGTACTCCCTCTGTAAACTAATAT 57.497 33.333 0.00 0.00 45.47 1.28
482 488 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
483 489 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
484 490 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
485 491 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
486 492 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
501 507 9.953697 ATAAGAGCGTTTAGATCACTACTTTAG 57.046 33.333 0.00 0.00 37.82 1.85
502 508 7.393841 AGAGCGTTTAGATCACTACTTTAGT 57.606 36.000 0.00 0.00 37.82 2.24
503 509 7.828712 AGAGCGTTTAGATCACTACTTTAGTT 58.171 34.615 0.00 0.00 37.82 2.24
504 510 8.954350 AGAGCGTTTAGATCACTACTTTAGTTA 58.046 33.333 0.00 0.00 37.82 2.24
505 511 9.733219 GAGCGTTTAGATCACTACTTTAGTTAT 57.267 33.333 0.00 0.00 36.76 1.89
506 512 9.733219 AGCGTTTAGATCACTACTTTAGTTATC 57.267 33.333 0.00 0.95 38.88 1.75
507 513 9.733219 GCGTTTAGATCACTACTTTAGTTATCT 57.267 33.333 12.46 12.46 46.18 1.98
536 542 9.710818 ACACTCTTATATTAGTTTACAGAGGGA 57.289 33.333 2.59 0.00 34.50 4.20
574 580 0.030908 CCGGTTCCAGCTCGAGATAC 59.969 60.000 18.75 4.89 0.00 2.24
577 583 2.159226 CGGTTCCAGCTCGAGATACTTT 60.159 50.000 18.75 0.00 0.00 2.66
600 606 0.332972 GCCTTTCCCCACCATCTTCT 59.667 55.000 0.00 0.00 0.00 2.85
685 691 2.740714 CGCGCTCCAGTTACCTTGC 61.741 63.158 5.56 0.00 0.00 4.01
738 744 3.244561 CCGCTTCAATGATATAGGTGGGT 60.245 47.826 0.00 0.00 0.00 4.51
741 747 4.807643 GCTTCAATGATATAGGTGGGTCCC 60.808 50.000 0.00 0.00 36.75 4.46
743 749 2.308866 CAATGATATAGGTGGGTCCCCC 59.691 54.545 5.13 6.38 45.71 5.40
759 765 0.692419 CCCCAGTCAGGTGAGCCTAT 60.692 60.000 0.00 0.00 44.97 2.57
770 776 6.209589 GTCAGGTGAGCCTATGATAGAATGTA 59.790 42.308 0.00 0.00 44.97 2.29
775 811 7.389053 GGTGAGCCTATGATAGAATGTAAAAGG 59.611 40.741 0.00 0.00 0.00 3.11
776 812 7.389053 GTGAGCCTATGATAGAATGTAAAAGGG 59.611 40.741 0.00 0.00 0.00 3.95
821 858 2.203209 GCCCCATGACGTCATCCC 60.203 66.667 27.79 12.37 33.61 3.85
844 881 4.333372 CCCTCTCTTCTTGTACTCGTAGAC 59.667 50.000 0.00 0.00 0.00 2.59
869 906 5.066505 AGTGGCGGCAATAAGAATTAAGAAG 59.933 40.000 15.50 0.00 32.17 2.85
907 944 4.221041 AGAGAGTTAGGAAGAAAGGTTCGG 59.779 45.833 0.00 0.00 34.02 4.30
979 1022 3.041940 GTGTCTTGGTCGGCGGTG 61.042 66.667 7.21 0.00 0.00 4.94
980 1023 3.228017 TGTCTTGGTCGGCGGTGA 61.228 61.111 7.21 0.00 0.00 4.02
1040 1096 2.046892 GCTGAGTGATGTGCCGGT 60.047 61.111 1.90 0.00 0.00 5.28
1047 1103 1.746239 TGATGTGCCGGTGATGCTG 60.746 57.895 1.90 0.00 0.00 4.41
1180 1236 2.202756 GCGAGAAGGTACCGCCAG 60.203 66.667 6.18 0.00 42.77 4.85
1181 1237 2.202756 CGAGAAGGTACCGCCAGC 60.203 66.667 6.18 0.00 40.61 4.85
1202 1258 1.497278 CGCCACCACACTTCGATTG 59.503 57.895 0.00 0.00 0.00 2.67
1216 1272 5.965334 CACTTCGATTGTTTATTCATTCCCG 59.035 40.000 0.00 0.00 0.00 5.14
1245 1301 2.896801 CGCACACTTGGCACCAGAC 61.897 63.158 0.00 0.00 0.00 3.51
1246 1302 2.555547 GCACACTTGGCACCAGACC 61.556 63.158 0.00 0.00 0.00 3.85
1247 1303 1.152984 CACACTTGGCACCAGACCA 60.153 57.895 0.00 0.00 34.65 4.02
1248 1304 1.149174 ACACTTGGCACCAGACCAG 59.851 57.895 0.00 0.00 38.73 4.00
1249 1305 1.344953 ACACTTGGCACCAGACCAGA 61.345 55.000 0.00 0.00 38.73 3.86
1254 1310 2.359230 GCACCAGACCAGAGCCAC 60.359 66.667 0.00 0.00 0.00 5.01
1263 1319 3.058160 CAGAGCCACGGCCTTTGG 61.058 66.667 14.65 14.65 43.17 3.28
1294 1350 2.276868 GATGATGCGTGCGTGTGC 60.277 61.111 0.00 0.00 43.20 4.57
1388 1444 0.671781 CCGCTTCAAGGAGGTGAGTG 60.672 60.000 0.00 0.00 0.00 3.51
1389 1445 0.318441 CGCTTCAAGGAGGTGAGTGA 59.682 55.000 0.00 0.00 0.00 3.41
1390 1446 1.270305 CGCTTCAAGGAGGTGAGTGAA 60.270 52.381 0.00 0.00 0.00 3.18
1391 1447 2.806745 CGCTTCAAGGAGGTGAGTGAAA 60.807 50.000 0.00 0.00 30.03 2.69
1392 1448 3.214328 GCTTCAAGGAGGTGAGTGAAAA 58.786 45.455 0.00 0.00 30.03 2.29
1393 1449 3.823304 GCTTCAAGGAGGTGAGTGAAAAT 59.177 43.478 0.00 0.00 30.03 1.82
1394 1450 4.279420 GCTTCAAGGAGGTGAGTGAAAATT 59.721 41.667 0.00 0.00 30.03 1.82
1395 1451 5.473504 GCTTCAAGGAGGTGAGTGAAAATTA 59.526 40.000 0.00 0.00 30.03 1.40
1396 1452 6.568653 GCTTCAAGGAGGTGAGTGAAAATTAC 60.569 42.308 0.00 0.00 30.03 1.89
1402 1458 6.014840 AGGAGGTGAGTGAAAATTACTACGAA 60.015 38.462 0.00 0.00 0.00 3.85
1403 1459 6.817140 GGAGGTGAGTGAAAATTACTACGAAT 59.183 38.462 0.00 0.00 0.00 3.34
1405 1461 7.383687 AGGTGAGTGAAAATTACTACGAATGA 58.616 34.615 0.00 0.00 0.00 2.57
1406 1462 7.876068 AGGTGAGTGAAAATTACTACGAATGAA 59.124 33.333 0.00 0.00 0.00 2.57
1409 1465 8.922676 TGAGTGAAAATTACTACGAATGAAGAC 58.077 33.333 0.00 0.00 0.00 3.01
1412 1468 7.682865 GTGAAAATTACTACGAATGAAGACACG 59.317 37.037 0.00 0.00 0.00 4.49
1418 1474 1.135373 ACGAATGAAGACACGATCGCT 60.135 47.619 16.60 0.75 35.14 4.93
1432 1489 2.598439 CGATCGCTTTGCTTGCAGTATC 60.598 50.000 0.26 0.00 0.00 2.24
1433 1490 0.721154 TCGCTTTGCTTGCAGTATCG 59.279 50.000 0.00 0.00 0.00 2.92
1434 1491 0.858961 CGCTTTGCTTGCAGTATCGC 60.859 55.000 0.00 0.00 0.00 4.58
1453 1512 1.859080 GCCGTCTTCGATGGTTATGTC 59.141 52.381 4.22 0.00 40.59 3.06
1473 1539 2.159430 TCGTGGAATGATGCAAAGAACG 59.841 45.455 0.00 0.00 0.00 3.95
1476 1542 3.189287 GTGGAATGATGCAAAGAACGAGT 59.811 43.478 0.00 0.00 0.00 4.18
1487 1553 1.869690 GAACGAGTTCTGCCTTGCC 59.130 57.895 8.58 0.00 36.69 4.52
1488 1554 0.603975 GAACGAGTTCTGCCTTGCCT 60.604 55.000 8.58 0.00 36.69 4.75
1489 1555 0.179018 AACGAGTTCTGCCTTGCCTT 60.179 50.000 0.00 0.00 0.00 4.35
1490 1556 0.179018 ACGAGTTCTGCCTTGCCTTT 60.179 50.000 0.00 0.00 0.00 3.11
1491 1557 0.954452 CGAGTTCTGCCTTGCCTTTT 59.046 50.000 0.00 0.00 0.00 2.27
1492 1558 1.335324 CGAGTTCTGCCTTGCCTTTTG 60.335 52.381 0.00 0.00 0.00 2.44
1493 1559 1.683385 GAGTTCTGCCTTGCCTTTTGT 59.317 47.619 0.00 0.00 0.00 2.83
1494 1560 2.101415 GAGTTCTGCCTTGCCTTTTGTT 59.899 45.455 0.00 0.00 0.00 2.83
1495 1561 2.501316 AGTTCTGCCTTGCCTTTTGTTT 59.499 40.909 0.00 0.00 0.00 2.83
1496 1562 2.600470 TCTGCCTTGCCTTTTGTTTG 57.400 45.000 0.00 0.00 0.00 2.93
1497 1563 0.939419 CTGCCTTGCCTTTTGTTTGC 59.061 50.000 0.00 0.00 0.00 3.68
1498 1564 0.809241 TGCCTTGCCTTTTGTTTGCG 60.809 50.000 0.00 0.00 0.00 4.85
1499 1565 1.498043 GCCTTGCCTTTTGTTTGCGG 61.498 55.000 0.00 0.00 0.00 5.69
1500 1566 0.179086 CCTTGCCTTTTGTTTGCGGT 60.179 50.000 0.00 0.00 0.00 5.68
1621 1687 3.423384 GCGTCGACGAGGTATATCTCTTC 60.423 52.174 39.74 13.96 43.02 2.87
1627 1693 5.333492 CGACGAGGTATATCTCTTCACTCAC 60.333 48.000 17.08 0.00 33.33 3.51
1630 1696 5.529430 CGAGGTATATCTCTTCACTCACAGT 59.471 44.000 11.23 0.00 0.00 3.55
1645 1711 2.426024 TCACAGTTCTGCCGTATAGTCC 59.574 50.000 0.00 0.00 0.00 3.85
1649 1715 3.865745 CAGTTCTGCCGTATAGTCCTTTG 59.134 47.826 0.00 0.00 0.00 2.77
1658 1767 6.041637 TGCCGTATAGTCCTTTGTATCAAGAT 59.958 38.462 0.00 0.00 0.00 2.40
1695 1804 5.298276 ACAATTGTCGTGTTGGTTAACTCAT 59.702 36.000 4.92 0.00 37.68 2.90
1696 1805 5.607119 ATTGTCGTGTTGGTTAACTCATC 57.393 39.130 5.42 2.51 37.68 2.92
1697 1806 4.061357 TGTCGTGTTGGTTAACTCATCA 57.939 40.909 5.42 4.93 37.68 3.07
1698 1807 4.055360 TGTCGTGTTGGTTAACTCATCAG 58.945 43.478 5.42 3.22 37.68 2.90
1699 1808 4.056050 GTCGTGTTGGTTAACTCATCAGT 58.944 43.478 5.42 0.00 37.68 3.41
1701 1810 4.509970 TCGTGTTGGTTAACTCATCAGTTG 59.490 41.667 5.42 2.14 43.17 3.16
1702 1811 4.509970 CGTGTTGGTTAACTCATCAGTTGA 59.490 41.667 5.42 0.00 43.17 3.18
1703 1812 5.179368 CGTGTTGGTTAACTCATCAGTTGAT 59.821 40.000 5.42 0.00 43.17 2.57
1704 1813 6.373779 GTGTTGGTTAACTCATCAGTTGATG 58.626 40.000 14.49 14.49 43.17 3.07
1705 1814 6.017109 GTGTTGGTTAACTCATCAGTTGATGT 60.017 38.462 18.69 5.70 43.17 3.06
1706 1815 6.017192 TGTTGGTTAACTCATCAGTTGATGTG 60.017 38.462 18.69 18.24 43.17 3.21
1721 1837 1.594862 GATGTGTATGTTCAGGCTCGC 59.405 52.381 0.00 0.00 0.00 5.03
1751 1867 2.104451 CCAGCAGCTGATATCTGGAGTT 59.896 50.000 25.65 0.00 46.80 3.01
1763 1879 2.752030 TCTGGAGTTAGCTACTGCCAT 58.248 47.619 7.79 0.00 43.99 4.40
1787 1903 3.565482 CCATGGTATCAATCTGTTTCCCG 59.435 47.826 2.57 0.00 0.00 5.14
1794 1910 7.444183 TGGTATCAATCTGTTTCCCGAATTATC 59.556 37.037 0.00 0.00 0.00 1.75
1802 1921 4.225492 TGTTTCCCGAATTATCCTACCACA 59.775 41.667 0.00 0.00 0.00 4.17
1971 2090 5.193679 GGTTATTCCAAGGTATTCTGTGCT 58.806 41.667 0.00 0.00 35.97 4.40
1972 2091 6.069905 TGGTTATTCCAAGGTATTCTGTGCTA 60.070 38.462 0.00 0.00 44.12 3.49
1973 2092 6.483640 GGTTATTCCAAGGTATTCTGTGCTAG 59.516 42.308 0.00 0.00 35.97 3.42
1992 2111 3.753294 AGTATTAATCTGGTGGAGCGG 57.247 47.619 0.00 0.00 0.00 5.52
2030 2149 2.779755 TGTGAACCATCTTACGCCAT 57.220 45.000 0.00 0.00 0.00 4.40
2071 2202 5.521372 GCCATTGCCAGATTTTTAAGTGATC 59.479 40.000 0.00 0.00 0.00 2.92
2135 2266 4.963276 TTCTCAACCAAAGTCAACTGTG 57.037 40.909 0.00 0.00 0.00 3.66
2177 2308 3.072944 CCCTGAAGTTCTGCTCAAGAAG 58.927 50.000 4.17 0.00 45.69 2.85
2232 2363 4.209112 CGCTTTCAAGTTTAAACCGTCTC 58.791 43.478 14.72 0.00 0.00 3.36
2270 2401 4.340381 ACCATCTGCTGCCTAATTTGAATC 59.660 41.667 0.00 0.00 0.00 2.52
2286 2417 3.286353 TGAATCATTTTGCTCGGCCATA 58.714 40.909 2.24 0.00 0.00 2.74
2373 2504 5.876357 TGAGGAGCAACCATTTAAAGTACT 58.124 37.500 0.00 0.00 42.04 2.73
2474 2605 0.946700 TGTGGTCATGTGGCGTAACG 60.947 55.000 0.00 0.00 0.00 3.18
2546 2677 8.782339 ATCCCAAGAATTTCAAAATGACAATC 57.218 30.769 0.00 0.00 0.00 2.67
2568 2699 4.089239 TATGCCGCCAGCCGTTCA 62.089 61.111 0.00 0.00 42.71 3.18
2584 2715 2.483877 CGTTCAGCTTAGCAATTCCACA 59.516 45.455 7.07 0.00 0.00 4.17
2619 2750 3.877508 AGCCAAACATCTAAATACCGAGC 59.122 43.478 0.00 0.00 0.00 5.03
2668 2799 1.262683 CCGTACTCGATTCCGGACTAC 59.737 57.143 1.83 0.00 43.01 2.73
2680 2811 3.367321 TCCGGACTACATTCACATACCA 58.633 45.455 0.00 0.00 0.00 3.25
2755 2886 1.738350 AGTACTCACTCCATCGACACG 59.262 52.381 0.00 0.00 0.00 4.49
2869 3000 1.201429 TCCTCAAGAACCTCCCAGCC 61.201 60.000 0.00 0.00 0.00 4.85
2998 3129 3.202706 GGCGCCCTCGGAATCAAC 61.203 66.667 18.11 0.00 35.95 3.18
3105 3236 5.163642 GGGAGATAGTATACGCCATGTAGTG 60.164 48.000 0.00 0.00 36.25 2.74
3130 3261 5.933617 ACCTGTGAATATCTGTATGTGCAT 58.066 37.500 0.00 0.00 0.00 3.96
3131 3262 5.761726 ACCTGTGAATATCTGTATGTGCATG 59.238 40.000 0.00 0.00 0.00 4.06
3132 3263 5.334646 CCTGTGAATATCTGTATGTGCATGC 60.335 44.000 11.82 11.82 0.00 4.06
3133 3264 5.124645 TGTGAATATCTGTATGTGCATGCA 58.875 37.500 18.46 18.46 32.58 3.96
3141 3272 1.717791 TATGTGCATGCAGAAGCGGC 61.718 55.000 23.41 8.03 46.23 6.53
3142 3273 4.824166 GTGCATGCAGAAGCGGCG 62.824 66.667 23.41 0.51 46.23 6.46
3178 3309 3.108144 CCTTGTTTGCTTCTTGAACACG 58.892 45.455 0.00 0.00 33.42 4.49
3179 3310 3.181501 CCTTGTTTGCTTCTTGAACACGA 60.182 43.478 0.00 0.00 33.42 4.35
3195 3326 0.670546 ACGAACCAGATTGAGTGCCG 60.671 55.000 0.00 0.00 0.00 5.69
3205 3336 2.553079 TTGAGTGCCGTTTTGTGTTC 57.447 45.000 0.00 0.00 0.00 3.18
3285 3417 3.825585 TGAAATTGGTGTTGCTGCTGATA 59.174 39.130 0.00 0.00 0.00 2.15
3346 3483 8.272545 TGGAGTTTTCTGATGATGTTGATAAG 57.727 34.615 0.00 0.00 0.00 1.73
3353 3490 6.814043 TCTGATGATGTTGATAAGAGGAGTG 58.186 40.000 0.00 0.00 0.00 3.51
3406 3584 9.541143 TGTTGTATTATGTGTGTATCATGTAGG 57.459 33.333 0.00 0.00 0.00 3.18
3431 3609 0.675633 AGCTGGTTTGTGATGCAACC 59.324 50.000 0.00 0.00 36.72 3.77
3472 3650 2.499289 CTGAGACTGCACTCCACCTATT 59.501 50.000 2.16 0.00 36.22 1.73
3486 3664 4.473196 TCCACCTATTCAATGCAAGGACTA 59.527 41.667 6.87 0.00 33.16 2.59
3534 3713 6.922957 GTCCTTTGTTGATCAATTGCTAACAA 59.077 34.615 20.67 20.67 38.88 2.83
3535 3714 6.922957 TCCTTTGTTGATCAATTGCTAACAAC 59.077 34.615 22.65 21.03 39.92 3.32
3544 3723 4.576873 TCAATTGCTAACAACCGAACAGAA 59.423 37.500 0.00 0.00 38.99 3.02
3569 3748 1.079819 CCGCTGTTCGAGGTGATGT 60.080 57.895 0.00 0.00 41.67 3.06
3570 3749 1.354337 CCGCTGTTCGAGGTGATGTG 61.354 60.000 0.00 0.00 41.67 3.21
3571 3750 0.667487 CGCTGTTCGAGGTGATGTGT 60.667 55.000 0.00 0.00 41.67 3.72
3572 3751 1.402325 CGCTGTTCGAGGTGATGTGTA 60.402 52.381 0.00 0.00 41.67 2.90
3573 3752 2.735444 CGCTGTTCGAGGTGATGTGTAT 60.735 50.000 0.00 0.00 41.67 2.29
3574 3753 2.860735 GCTGTTCGAGGTGATGTGTATC 59.139 50.000 0.00 0.00 0.00 2.24
3575 3754 3.676049 GCTGTTCGAGGTGATGTGTATCA 60.676 47.826 0.00 0.00 40.92 2.15
3576 3755 4.108336 CTGTTCGAGGTGATGTGTATCAG 58.892 47.826 0.00 0.00 43.66 2.90
3590 3769 6.385649 TGTGTATCAGTGTATGCGATTAGA 57.614 37.500 0.00 0.00 0.00 2.10
3617 3796 1.339151 GCTGGAAAGGTTGATCGGTCT 60.339 52.381 0.00 0.00 0.00 3.85
3664 3843 2.706555 GGCTTTACTGTTGCCAAGAC 57.293 50.000 12.19 0.00 45.46 3.01
3712 3894 3.153130 TCAATTGCGAACAATCCCTGAA 58.847 40.909 0.00 0.00 45.90 3.02
3729 3911 3.369892 CCTGAAAGAAGGGATCGACATGT 60.370 47.826 0.00 0.00 34.07 3.21
3738 3920 1.066143 GGATCGACATGTTGTGGAGGT 60.066 52.381 12.90 0.00 38.46 3.85
3739 3921 2.002586 GATCGACATGTTGTGGAGGTG 58.997 52.381 12.90 0.00 38.46 4.00
3744 3926 0.955428 CATGTTGTGGAGGTGGTCGG 60.955 60.000 0.00 0.00 0.00 4.79
3752 3934 2.994995 AGGTGGTCGGCGATGTCA 60.995 61.111 14.79 9.69 0.00 3.58
3764 3946 0.249073 CGATGTCAGGGAAGTAGCCG 60.249 60.000 0.00 0.00 0.00 5.52
3774 3956 2.102588 GGGAAGTAGCCGTGTCATATGT 59.897 50.000 1.90 0.00 0.00 2.29
3775 3957 3.431766 GGGAAGTAGCCGTGTCATATGTT 60.432 47.826 1.90 0.00 0.00 2.71
3809 3991 4.072088 CGCTCACGAAACACGGGC 62.072 66.667 0.00 0.00 45.95 6.13
3810 3992 2.970324 GCTCACGAAACACGGGCA 60.970 61.111 0.00 0.00 45.95 5.36
3820 4002 2.825836 CACGGGCAATGGAGGAGC 60.826 66.667 0.00 0.00 0.00 4.70
3830 4012 3.044305 GGAGGAGCGTGTGTGTGC 61.044 66.667 0.00 0.00 0.00 4.57
3836 4018 4.741781 GCGTGTGTGTGCGCCATC 62.742 66.667 4.18 0.00 46.93 3.51
3837 4019 3.043713 CGTGTGTGTGCGCCATCT 61.044 61.111 4.18 0.00 0.00 2.90
3838 4020 2.863153 GTGTGTGTGCGCCATCTC 59.137 61.111 4.18 0.00 0.00 2.75
3853 4043 6.150307 TGCGCCATCTCTTCAAAATTTTAGTA 59.850 34.615 4.18 0.00 0.00 1.82
3861 4051 8.836413 TCTCTTCAAAATTTTAGTAGTGTGTGG 58.164 33.333 2.44 0.00 0.00 4.17
3881 4071 5.450818 TGGAAGAGCCAACCTTATATGTT 57.549 39.130 0.00 0.00 45.87 2.71
3882 4072 5.192927 TGGAAGAGCCAACCTTATATGTTG 58.807 41.667 8.11 8.11 45.87 3.33
3914 4104 1.584724 CTTCACTACCAGGGTGGGAT 58.415 55.000 6.77 0.00 43.37 3.85
3928 4118 3.118775 GGGTGGGATTAAACTTTCCATGC 60.119 47.826 0.00 0.00 33.43 4.06
3940 4131 0.413037 TTCCATGCCCCCTTGTCATT 59.587 50.000 0.00 0.00 0.00 2.57
3941 4132 0.324552 TCCATGCCCCCTTGTCATTG 60.325 55.000 0.00 0.00 0.00 2.82
3942 4133 0.615544 CCATGCCCCCTTGTCATTGT 60.616 55.000 0.00 0.00 0.00 2.71
3943 4134 0.533491 CATGCCCCCTTGTCATTGTG 59.467 55.000 0.00 0.00 0.00 3.33
3944 4135 1.259840 ATGCCCCCTTGTCATTGTGC 61.260 55.000 0.00 0.00 0.00 4.57
3945 4136 2.993471 GCCCCCTTGTCATTGTGCG 61.993 63.158 0.00 0.00 0.00 5.34
3946 4137 1.303236 CCCCCTTGTCATTGTGCGA 60.303 57.895 0.00 0.00 0.00 5.10
3947 4138 0.680921 CCCCCTTGTCATTGTGCGAT 60.681 55.000 0.00 0.00 0.00 4.58
3948 4139 0.452987 CCCCTTGTCATTGTGCGATG 59.547 55.000 0.00 0.00 0.00 3.84
3949 4140 0.452987 CCCTTGTCATTGTGCGATGG 59.547 55.000 0.00 0.00 0.00 3.51
3950 4141 0.179156 CCTTGTCATTGTGCGATGGC 60.179 55.000 0.00 0.00 40.52 4.40
3951 4142 0.521867 CTTGTCATTGTGCGATGGCG 60.522 55.000 0.00 0.00 44.10 5.69
3952 4143 1.921045 TTGTCATTGTGCGATGGCGG 61.921 55.000 0.00 0.00 44.10 6.13
3953 4144 2.106074 GTCATTGTGCGATGGCGGA 61.106 57.895 0.00 0.00 44.10 5.54
3954 4145 1.376553 TCATTGTGCGATGGCGGAA 60.377 52.632 0.00 0.00 44.10 4.30
3955 4146 0.957888 TCATTGTGCGATGGCGGAAA 60.958 50.000 0.00 0.00 44.10 3.13
3956 4147 0.523968 CATTGTGCGATGGCGGAAAG 60.524 55.000 0.00 0.00 44.10 2.62
3957 4148 2.270297 ATTGTGCGATGGCGGAAAGC 62.270 55.000 0.00 0.00 44.10 3.51
3966 4157 4.592426 GCGGAAAGCGTCTTACCT 57.408 55.556 0.00 0.00 35.41 3.08
3967 4158 2.370885 GCGGAAAGCGTCTTACCTC 58.629 57.895 0.00 0.00 35.41 3.85
3968 4159 1.411493 GCGGAAAGCGTCTTACCTCG 61.411 60.000 0.00 0.00 35.41 4.63
3969 4160 0.169672 CGGAAAGCGTCTTACCTCGA 59.830 55.000 0.00 0.00 0.00 4.04
3970 4161 1.202268 CGGAAAGCGTCTTACCTCGAT 60.202 52.381 0.00 0.00 0.00 3.59
3971 4162 2.461903 GGAAAGCGTCTTACCTCGATC 58.538 52.381 0.00 0.00 0.00 3.69
3972 4163 2.110226 GAAAGCGTCTTACCTCGATCG 58.890 52.381 9.36 9.36 0.00 3.69
3973 4164 0.381089 AAGCGTCTTACCTCGATCGG 59.619 55.000 16.41 5.93 0.00 4.18
3974 4165 0.463295 AGCGTCTTACCTCGATCGGA 60.463 55.000 16.41 0.00 0.00 4.55
3975 4166 0.041135 GCGTCTTACCTCGATCGGAG 60.041 60.000 16.41 11.05 42.75 4.63
3982 4173 3.967335 CTCGATCGGAGGGGACGC 61.967 72.222 16.41 0.00 39.22 5.19
3999 4190 0.848305 CGCCGTACGTGTTTATAGGC 59.152 55.000 15.21 5.92 39.68 3.93
4000 4191 1.798446 CGCCGTACGTGTTTATAGGCA 60.798 52.381 15.21 0.00 42.90 4.75
4001 4192 1.856597 GCCGTACGTGTTTATAGGCAG 59.143 52.381 15.21 0.00 42.37 4.85
4002 4193 2.466846 CCGTACGTGTTTATAGGCAGG 58.533 52.381 15.21 0.00 0.00 4.85
4003 4194 2.466846 CGTACGTGTTTATAGGCAGGG 58.533 52.381 7.22 0.00 0.00 4.45
4004 4195 2.800629 CGTACGTGTTTATAGGCAGGGG 60.801 54.545 7.22 0.00 0.00 4.79
4005 4196 0.107361 ACGTGTTTATAGGCAGGGGC 60.107 55.000 0.00 0.00 40.13 5.80
4006 4197 1.157870 CGTGTTTATAGGCAGGGGCG 61.158 60.000 0.00 0.00 42.47 6.13
4007 4198 1.153046 TGTTTATAGGCAGGGGCGC 60.153 57.895 0.00 0.00 42.47 6.53
4008 4199 1.153046 GTTTATAGGCAGGGGCGCA 60.153 57.895 10.83 0.00 42.47 6.09
4009 4200 1.153046 TTTATAGGCAGGGGCGCAC 60.153 57.895 10.83 4.83 42.47 5.34
4010 4201 2.618368 TTTATAGGCAGGGGCGCACC 62.618 60.000 24.88 24.88 42.47 5.01
4019 4210 3.161450 GGGCGCACCTCCCTGATA 61.161 66.667 10.83 0.00 40.66 2.15
4020 4211 2.423446 GGCGCACCTCCCTGATAG 59.577 66.667 10.83 0.00 0.00 2.08
4021 4212 2.280457 GCGCACCTCCCTGATAGC 60.280 66.667 0.30 0.00 0.00 2.97
4022 4213 2.028190 CGCACCTCCCTGATAGCG 59.972 66.667 0.00 0.00 39.17 4.26
4023 4214 2.280457 GCACCTCCCTGATAGCGC 60.280 66.667 0.00 0.00 0.00 5.92
4024 4215 3.094062 GCACCTCCCTGATAGCGCA 62.094 63.158 11.47 0.00 0.00 6.09
4025 4216 1.750930 CACCTCCCTGATAGCGCAT 59.249 57.895 11.47 0.06 0.00 4.73
4026 4217 0.969149 CACCTCCCTGATAGCGCATA 59.031 55.000 11.47 0.00 0.00 3.14
4027 4218 0.969894 ACCTCCCTGATAGCGCATAC 59.030 55.000 11.47 0.00 0.00 2.39
4028 4219 0.969149 CCTCCCTGATAGCGCATACA 59.031 55.000 11.47 5.14 0.00 2.29
4029 4220 1.067283 CCTCCCTGATAGCGCATACAG 60.067 57.143 11.47 14.90 0.00 2.74
4030 4221 1.615883 CTCCCTGATAGCGCATACAGT 59.384 52.381 11.47 0.00 0.00 3.55
4031 4222 2.036475 CTCCCTGATAGCGCATACAGTT 59.964 50.000 11.47 0.00 0.00 3.16
4032 4223 2.434336 TCCCTGATAGCGCATACAGTTT 59.566 45.455 11.47 0.00 0.00 2.66
4033 4224 3.639561 TCCCTGATAGCGCATACAGTTTA 59.360 43.478 11.47 0.63 0.00 2.01
4034 4225 3.990469 CCCTGATAGCGCATACAGTTTAG 59.010 47.826 11.47 2.88 0.00 1.85
4035 4226 4.262036 CCCTGATAGCGCATACAGTTTAGA 60.262 45.833 11.47 0.00 0.00 2.10
4036 4227 5.473931 CCTGATAGCGCATACAGTTTAGAT 58.526 41.667 11.47 0.00 0.00 1.98
4037 4228 5.928839 CCTGATAGCGCATACAGTTTAGATT 59.071 40.000 11.47 0.00 0.00 2.40
4038 4229 7.090808 CCTGATAGCGCATACAGTTTAGATTA 58.909 38.462 11.47 0.00 0.00 1.75
4039 4230 7.062371 CCTGATAGCGCATACAGTTTAGATTAC 59.938 40.741 11.47 0.00 0.00 1.89
4040 4231 7.430441 TGATAGCGCATACAGTTTAGATTACA 58.570 34.615 11.47 0.00 0.00 2.41
4041 4232 8.088365 TGATAGCGCATACAGTTTAGATTACAT 58.912 33.333 11.47 0.00 0.00 2.29
4042 4233 6.771188 AGCGCATACAGTTTAGATTACATC 57.229 37.500 11.47 0.00 0.00 3.06
4043 4234 6.516718 AGCGCATACAGTTTAGATTACATCT 58.483 36.000 11.47 0.00 43.33 2.90
4044 4235 6.986817 AGCGCATACAGTTTAGATTACATCTT 59.013 34.615 11.47 0.00 40.76 2.40
4045 4236 7.042456 AGCGCATACAGTTTAGATTACATCTTG 60.042 37.037 11.47 0.00 40.76 3.02
4046 4237 7.042725 GCGCATACAGTTTAGATTACATCTTGA 60.043 37.037 0.30 0.00 40.76 3.02
4047 4238 8.817100 CGCATACAGTTTAGATTACATCTTGAA 58.183 33.333 0.00 0.00 40.76 2.69
4055 4246 9.980780 GTTTAGATTACATCTTGAAGAAGAAGC 57.019 33.333 4.26 0.00 41.64 3.86
4056 4247 9.950496 TTTAGATTACATCTTGAAGAAGAAGCT 57.050 29.630 4.26 7.15 41.64 3.74
4059 4250 9.598517 AGATTACATCTTGAAGAAGAAGCTAAG 57.401 33.333 4.26 0.00 41.64 2.18
4060 4251 9.377312 GATTACATCTTGAAGAAGAAGCTAAGT 57.623 33.333 4.26 0.00 41.64 2.24
4062 4253 9.862371 TTACATCTTGAAGAAGAAGCTAAGTAG 57.138 33.333 4.26 0.00 41.64 2.57
4063 4254 8.128322 ACATCTTGAAGAAGAAGCTAAGTAGA 57.872 34.615 4.26 0.00 41.64 2.59
4064 4255 8.250332 ACATCTTGAAGAAGAAGCTAAGTAGAG 58.750 37.037 4.26 0.00 41.64 2.43
4065 4256 8.465999 CATCTTGAAGAAGAAGCTAAGTAGAGA 58.534 37.037 0.00 0.00 41.64 3.10
4066 4257 8.588290 TCTTGAAGAAGAAGCTAAGTAGAGAT 57.412 34.615 0.00 0.00 35.14 2.75
4067 4258 9.688091 TCTTGAAGAAGAAGCTAAGTAGAGATA 57.312 33.333 0.00 0.00 35.14 1.98
4070 4261 9.688091 TGAAGAAGAAGCTAAGTAGAGATAAGA 57.312 33.333 0.00 0.00 0.00 2.10
4083 4274 9.793259 AAGTAGAGATAAGATTACAGAGAGGAG 57.207 37.037 0.00 0.00 0.00 3.69
4084 4275 9.166222 AGTAGAGATAAGATTACAGAGAGGAGA 57.834 37.037 0.00 0.00 0.00 3.71
4085 4276 9.959721 GTAGAGATAAGATTACAGAGAGGAGAT 57.040 37.037 0.00 0.00 0.00 2.75
4094 4285 9.793259 AGATTACAGAGAGGAGATAAACTCTAG 57.207 37.037 0.00 0.00 43.71 2.43
4095 4286 7.811117 TTACAGAGAGGAGATAAACTCTAGC 57.189 40.000 0.00 0.00 43.71 3.42
4096 4287 6.013554 ACAGAGAGGAGATAAACTCTAGCT 57.986 41.667 0.00 0.00 43.71 3.32
4097 4288 7.144234 ACAGAGAGGAGATAAACTCTAGCTA 57.856 40.000 0.00 0.00 43.71 3.32
4098 4289 7.579105 ACAGAGAGGAGATAAACTCTAGCTAA 58.421 38.462 0.00 0.00 43.71 3.09
4099 4290 7.501225 ACAGAGAGGAGATAAACTCTAGCTAAC 59.499 40.741 0.00 0.00 43.71 2.34
4100 4291 7.002276 AGAGAGGAGATAAACTCTAGCTAACC 58.998 42.308 0.00 0.00 43.71 2.85
4101 4292 6.674573 AGAGGAGATAAACTCTAGCTAACCA 58.325 40.000 0.00 0.00 42.00 3.67
4102 4293 6.548251 AGAGGAGATAAACTCTAGCTAACCAC 59.452 42.308 0.00 0.00 42.00 4.16
4103 4294 5.599242 AGGAGATAAACTCTAGCTAACCACC 59.401 44.000 0.00 0.00 44.37 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.067106 ACTGTAAACATCGCAACCTCTG 58.933 45.455 0.00 0.00 0.00 3.35
2 3 3.067106 CACTGTAAACATCGCAACCTCT 58.933 45.455 0.00 0.00 0.00 3.69
3 4 2.412847 GCACTGTAAACATCGCAACCTC 60.413 50.000 0.00 0.00 0.00 3.85
20 21 0.880278 CCAACACTACGCACTGCACT 60.880 55.000 1.11 0.00 0.00 4.40
70 73 5.103000 CGAGGGTTGACTGTTAACATCTAG 58.897 45.833 15.95 9.61 0.00 2.43
138 141 4.058817 CCATTTCCTAGCATCGTACTTCC 58.941 47.826 0.00 0.00 0.00 3.46
191 194 5.396660 ATGAAAGGAAAAGCTTTTGCCTTCA 60.397 36.000 37.60 37.60 45.94 3.02
283 289 4.382754 GGACGCAAAAATGACTAAAAGCTG 59.617 41.667 0.00 0.00 0.00 4.24
285 291 4.546570 AGGACGCAAAAATGACTAAAAGC 58.453 39.130 0.00 0.00 0.00 3.51
379 385 3.494454 TTTTTCGTGGTGCGTCGCG 62.494 57.895 13.38 0.00 42.13 5.87
384 390 0.591170 ATCAGGTTTTTCGTGGTGCG 59.409 50.000 0.00 0.00 43.01 5.34
414 420 3.784338 CGAAATAAACTACCGGCACCTA 58.216 45.455 0.00 0.00 0.00 3.08
419 425 3.474693 TTTGCGAAATAAACTACCGGC 57.525 42.857 0.00 0.00 0.00 6.13
456 462 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
457 463 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
458 464 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
459 465 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
460 466 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
475 481 9.953697 CTAAAGTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 0.00 1.73
476 482 8.954350 ACTAAAGTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 37.69 2.10
477 483 7.828712 ACTAAAGTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 37.69 2.85
478 484 7.393841 ACTAAAGTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 37.69 4.09
479 485 9.733219 ATAACTAAAGTAGTGATCTAAACGCTC 57.267 33.333 0.00 0.00 39.39 5.03
480 486 9.733219 GATAACTAAAGTAGTGATCTAAACGCT 57.267 33.333 5.75 0.00 41.55 5.07
510 516 9.710818 TCCCTCTGTAAACTAATATAAGAGTGT 57.289 33.333 0.00 0.00 0.00 3.55
512 518 9.939424 ACTCCCTCTGTAAACTAATATAAGAGT 57.061 33.333 0.00 0.00 0.00 3.24
516 522 9.940974 TGGTACTCCCTCTGTAAACTAATATAA 57.059 33.333 0.00 0.00 0.00 0.98
517 523 9.584008 CTGGTACTCCCTCTGTAAACTAATATA 57.416 37.037 0.00 0.00 0.00 0.86
518 524 8.066247 ACTGGTACTCCCTCTGTAAACTAATAT 58.934 37.037 0.00 0.00 0.00 1.28
519 525 7.416731 ACTGGTACTCCCTCTGTAAACTAATA 58.583 38.462 0.00 0.00 0.00 0.98
520 526 6.262207 ACTGGTACTCCCTCTGTAAACTAAT 58.738 40.000 0.00 0.00 0.00 1.73
521 527 5.648247 ACTGGTACTCCCTCTGTAAACTAA 58.352 41.667 0.00 0.00 0.00 2.24
522 528 5.266709 ACTGGTACTCCCTCTGTAAACTA 57.733 43.478 0.00 0.00 0.00 2.24
523 529 4.129317 ACTGGTACTCCCTCTGTAAACT 57.871 45.455 0.00 0.00 0.00 2.66
524 530 5.990120 TTACTGGTACTCCCTCTGTAAAC 57.010 43.478 0.00 0.00 0.00 2.01
525 531 7.236019 TCAAATTACTGGTACTCCCTCTGTAAA 59.764 37.037 0.00 0.00 32.36 2.01
526 532 6.727231 TCAAATTACTGGTACTCCCTCTGTAA 59.273 38.462 0.00 0.00 32.78 2.41
527 533 6.258354 TCAAATTACTGGTACTCCCTCTGTA 58.742 40.000 0.00 0.00 0.00 2.74
528 534 5.091552 TCAAATTACTGGTACTCCCTCTGT 58.908 41.667 0.00 0.00 0.00 3.41
529 535 5.677319 TCAAATTACTGGTACTCCCTCTG 57.323 43.478 0.00 0.00 0.00 3.35
530 536 5.367060 GGATCAAATTACTGGTACTCCCTCT 59.633 44.000 0.00 0.00 0.00 3.69
531 537 5.454897 GGGATCAAATTACTGGTACTCCCTC 60.455 48.000 0.00 0.00 37.43 4.30
532 538 4.412528 GGGATCAAATTACTGGTACTCCCT 59.587 45.833 0.00 0.00 37.43 4.20
533 539 4.445879 GGGGATCAAATTACTGGTACTCCC 60.446 50.000 0.00 0.00 39.28 4.30
534 540 4.715713 GGGGATCAAATTACTGGTACTCC 58.284 47.826 0.00 0.00 0.00 3.85
535 541 4.377897 CGGGGATCAAATTACTGGTACTC 58.622 47.826 0.00 0.00 0.00 2.59
536 542 3.135895 CCGGGGATCAAATTACTGGTACT 59.864 47.826 0.00 0.00 0.00 2.73
574 580 1.977009 GTGGGGAAAGGCGGGAAAG 60.977 63.158 0.00 0.00 0.00 2.62
600 606 1.000607 GTGTCTGTAGCGTGTGGAGAA 60.001 52.381 0.00 0.00 0.00 2.87
685 691 2.100631 ACTCGCGGCTTTGAATCGG 61.101 57.895 6.13 0.00 0.00 4.18
738 744 2.607750 GCTCACCTGACTGGGGGA 60.608 66.667 0.11 0.00 40.47 4.81
821 858 4.333372 GTCTACGAGTACAAGAAGAGAGGG 59.667 50.000 0.00 0.00 0.00 4.30
844 881 4.335315 TCTTAATTCTTATTGCCGCCACTG 59.665 41.667 0.00 0.00 0.00 3.66
888 925 2.370849 TGCCGAACCTTTCTTCCTAACT 59.629 45.455 0.00 0.00 0.00 2.24
889 926 2.742589 CTGCCGAACCTTTCTTCCTAAC 59.257 50.000 0.00 0.00 0.00 2.34
917 954 0.110419 CCTTATCTCTCTCGCTCGCG 60.110 60.000 0.00 0.00 41.35 5.87
1032 1088 3.635191 TCCAGCATCACCGGCACA 61.635 61.111 0.00 0.00 0.00 4.57
1040 1096 4.451150 GGTCGCCGTCCAGCATCA 62.451 66.667 0.00 0.00 0.00 3.07
1202 1258 4.380841 GGGAAACCGGGAATGAATAAAC 57.619 45.455 6.32 0.00 43.64 2.01
1245 1301 3.058160 CAAAGGCCGTGGCTCTGG 61.058 66.667 11.25 0.00 37.50 3.86
1246 1302 2.463589 TACCAAAGGCCGTGGCTCTG 62.464 60.000 24.12 4.51 40.02 3.35
1247 1303 1.562672 ATACCAAAGGCCGTGGCTCT 61.563 55.000 24.12 10.85 40.02 4.09
1248 1304 0.679960 AATACCAAAGGCCGTGGCTC 60.680 55.000 24.12 0.97 40.02 4.70
1249 1305 0.251608 AAATACCAAAGGCCGTGGCT 60.252 50.000 24.12 15.31 40.02 4.75
1254 1310 4.776795 AACTTGTAAATACCAAAGGCCG 57.223 40.909 0.00 0.00 0.00 6.13
1263 1319 6.021468 GCACGCATCATCAAACTTGTAAATAC 60.021 38.462 0.00 0.00 0.00 1.89
1298 1354 2.612219 TTCTCATCGATCTGCGCGCA 62.612 55.000 34.12 34.12 40.61 6.09
1388 1444 7.946043 TCGTGTCTTCATTCGTAGTAATTTTC 58.054 34.615 0.00 0.00 0.00 2.29
1389 1445 7.878477 TCGTGTCTTCATTCGTAGTAATTTT 57.122 32.000 0.00 0.00 0.00 1.82
1390 1446 7.044249 CGATCGTGTCTTCATTCGTAGTAATTT 60.044 37.037 7.03 0.00 0.00 1.82
1391 1447 6.414109 CGATCGTGTCTTCATTCGTAGTAATT 59.586 38.462 7.03 0.00 0.00 1.40
1392 1448 5.907945 CGATCGTGTCTTCATTCGTAGTAAT 59.092 40.000 7.03 0.00 0.00 1.89
1393 1449 5.260900 CGATCGTGTCTTCATTCGTAGTAA 58.739 41.667 7.03 0.00 0.00 2.24
1394 1450 4.784394 GCGATCGTGTCTTCATTCGTAGTA 60.784 45.833 17.81 0.00 0.00 1.82
1395 1451 3.681855 CGATCGTGTCTTCATTCGTAGT 58.318 45.455 7.03 0.00 0.00 2.73
1396 1452 2.464380 GCGATCGTGTCTTCATTCGTAG 59.536 50.000 17.81 0.00 0.00 3.51
1402 1458 1.394917 GCAAAGCGATCGTGTCTTCAT 59.605 47.619 17.81 0.00 0.00 2.57
1403 1459 0.790207 GCAAAGCGATCGTGTCTTCA 59.210 50.000 17.81 0.00 0.00 3.02
1405 1461 1.195448 CAAGCAAAGCGATCGTGTCTT 59.805 47.619 17.81 8.78 0.00 3.01
1406 1462 0.792640 CAAGCAAAGCGATCGTGTCT 59.207 50.000 17.81 2.08 0.00 3.41
1409 1465 0.791983 CTGCAAGCAAAGCGATCGTG 60.792 55.000 17.81 8.44 33.85 4.35
1412 1468 2.598439 CGATACTGCAAGCAAAGCGATC 60.598 50.000 8.46 1.67 37.60 3.69
1418 1474 0.953471 ACGGCGATACTGCAAGCAAA 60.953 50.000 16.62 0.00 37.60 3.68
1453 1512 2.159430 TCGTTCTTTGCATCATTCCACG 59.841 45.455 0.00 0.00 0.00 4.94
1473 1539 1.683385 ACAAAAGGCAAGGCAGAACTC 59.317 47.619 0.00 0.00 0.00 3.01
1476 1542 2.903798 CAAACAAAAGGCAAGGCAGAA 58.096 42.857 0.00 0.00 0.00 3.02
1481 1547 0.179086 ACCGCAAACAAAAGGCAAGG 60.179 50.000 0.00 0.00 0.00 3.61
1482 1548 1.592543 GAACCGCAAACAAAAGGCAAG 59.407 47.619 0.00 0.00 0.00 4.01
1483 1549 1.205893 AGAACCGCAAACAAAAGGCAA 59.794 42.857 0.00 0.00 0.00 4.52
1484 1550 0.820871 AGAACCGCAAACAAAAGGCA 59.179 45.000 0.00 0.00 0.00 4.75
1485 1551 1.858458 GAAGAACCGCAAACAAAAGGC 59.142 47.619 0.00 0.00 0.00 4.35
1486 1552 3.115554 CTGAAGAACCGCAAACAAAAGG 58.884 45.455 0.00 0.00 0.00 3.11
1487 1553 3.115554 CCTGAAGAACCGCAAACAAAAG 58.884 45.455 0.00 0.00 0.00 2.27
1488 1554 2.494073 ACCTGAAGAACCGCAAACAAAA 59.506 40.909 0.00 0.00 0.00 2.44
1489 1555 2.096248 ACCTGAAGAACCGCAAACAAA 58.904 42.857 0.00 0.00 0.00 2.83
1490 1556 1.757682 ACCTGAAGAACCGCAAACAA 58.242 45.000 0.00 0.00 0.00 2.83
1491 1557 1.757682 AACCTGAAGAACCGCAAACA 58.242 45.000 0.00 0.00 0.00 2.83
1492 1558 4.215613 AGAATAACCTGAAGAACCGCAAAC 59.784 41.667 0.00 0.00 0.00 2.93
1493 1559 4.215399 CAGAATAACCTGAAGAACCGCAAA 59.785 41.667 0.00 0.00 36.29 3.68
1494 1560 3.751175 CAGAATAACCTGAAGAACCGCAA 59.249 43.478 0.00 0.00 36.29 4.85
1495 1561 3.007506 TCAGAATAACCTGAAGAACCGCA 59.992 43.478 0.00 0.00 39.96 5.69
1496 1562 3.371285 GTCAGAATAACCTGAAGAACCGC 59.629 47.826 0.00 0.00 43.94 5.68
1497 1563 3.612860 CGTCAGAATAACCTGAAGAACCG 59.387 47.826 0.00 0.00 43.94 4.44
1498 1564 3.371285 GCGTCAGAATAACCTGAAGAACC 59.629 47.826 10.19 0.00 43.94 3.62
1499 1565 3.371285 GGCGTCAGAATAACCTGAAGAAC 59.629 47.826 10.19 0.47 43.94 3.01
1500 1566 3.596214 GGCGTCAGAATAACCTGAAGAA 58.404 45.455 10.19 0.00 43.94 2.52
1594 1660 0.098376 ATACCTCGTCGACGCTGAAC 59.902 55.000 32.19 0.00 39.60 3.18
1621 1687 2.370281 ATACGGCAGAACTGTGAGTG 57.630 50.000 3.77 0.00 38.72 3.51
1627 1693 3.802948 AAGGACTATACGGCAGAACTG 57.197 47.619 0.00 0.00 0.00 3.16
1630 1696 5.361571 TGATACAAAGGACTATACGGCAGAA 59.638 40.000 0.00 0.00 0.00 3.02
1658 1767 6.428465 ACACGACAATTGTACCATCATACAAA 59.572 34.615 11.95 0.00 45.63 2.83
1677 1786 4.056050 ACTGATGAGTTAACCAACACGAC 58.944 43.478 0.88 0.00 37.10 4.34
1678 1787 4.330944 ACTGATGAGTTAACCAACACGA 57.669 40.909 0.88 0.00 37.10 4.35
1679 1788 4.509970 TCAACTGATGAGTTAACCAACACG 59.490 41.667 0.88 3.23 40.68 4.49
1680 1789 6.560253 ATCAACTGATGAGTTAACCAACAC 57.440 37.500 0.88 0.00 40.68 3.32
1695 1804 4.002982 GCCTGAACATACACATCAACTGA 58.997 43.478 0.00 0.00 0.00 3.41
1696 1805 4.005650 AGCCTGAACATACACATCAACTG 58.994 43.478 0.00 0.00 0.00 3.16
1697 1806 4.256920 GAGCCTGAACATACACATCAACT 58.743 43.478 0.00 0.00 0.00 3.16
1698 1807 3.062639 CGAGCCTGAACATACACATCAAC 59.937 47.826 0.00 0.00 0.00 3.18
1699 1808 3.261580 CGAGCCTGAACATACACATCAA 58.738 45.455 0.00 0.00 0.00 2.57
1701 1810 1.594862 GCGAGCCTGAACATACACATC 59.405 52.381 0.00 0.00 0.00 3.06
1702 1811 1.208052 AGCGAGCCTGAACATACACAT 59.792 47.619 0.00 0.00 0.00 3.21
1703 1812 0.608130 AGCGAGCCTGAACATACACA 59.392 50.000 0.00 0.00 0.00 3.72
1704 1813 1.661112 GAAGCGAGCCTGAACATACAC 59.339 52.381 0.00 0.00 0.00 2.90
1705 1814 1.550524 AGAAGCGAGCCTGAACATACA 59.449 47.619 0.00 0.00 0.00 2.29
1706 1815 2.301577 AGAAGCGAGCCTGAACATAC 57.698 50.000 0.00 0.00 0.00 2.39
1707 1816 3.334583 AAAGAAGCGAGCCTGAACATA 57.665 42.857 0.00 0.00 0.00 2.29
1708 1817 2.191128 AAAGAAGCGAGCCTGAACAT 57.809 45.000 0.00 0.00 0.00 2.71
1721 1837 5.589452 AGATATCAGCTGCTGGAAAAAGAAG 59.411 40.000 27.79 0.00 31.51 2.85
1763 1879 5.200483 GGGAAACAGATTGATACCATGGAA 58.800 41.667 21.47 1.63 0.00 3.53
1781 1897 5.131308 TCATGTGGTAGGATAATTCGGGAAA 59.869 40.000 0.00 0.00 0.00 3.13
1787 1903 9.574516 AGGTAAAATCATGTGGTAGGATAATTC 57.425 33.333 0.00 0.00 0.00 2.17
1794 1910 5.949354 TGGAAAGGTAAAATCATGTGGTAGG 59.051 40.000 0.00 0.00 0.00 3.18
1802 1921 8.749354 GGAAACTACATGGAAAGGTAAAATCAT 58.251 33.333 0.00 0.00 0.00 2.45
1971 2090 3.006537 GCCGCTCCACCAGATTAATACTA 59.993 47.826 0.00 0.00 0.00 1.82
1972 2091 2.224305 GCCGCTCCACCAGATTAATACT 60.224 50.000 0.00 0.00 0.00 2.12
1973 2092 2.143925 GCCGCTCCACCAGATTAATAC 58.856 52.381 0.00 0.00 0.00 1.89
1992 2111 0.462759 ATAAGGAAGCACTCAGGCGC 60.463 55.000 0.00 0.00 39.27 6.53
2006 2125 3.560068 GGCGTAAGATGGTTCACATAAGG 59.440 47.826 0.00 0.00 40.72 2.69
2071 2202 6.566197 AATTAGAGAAAAACAGGAGTGCAG 57.434 37.500 0.00 0.00 0.00 4.41
2084 2215 6.312918 GCACCGATGACTGTAAATTAGAGAAA 59.687 38.462 4.07 0.00 0.00 2.52
2135 2266 1.834188 CAATATATGCCGGGGTTCCC 58.166 55.000 2.18 0.00 41.09 3.97
2177 2308 2.484264 GCATACCTTGCCATCGTATTCC 59.516 50.000 0.00 0.00 46.15 3.01
2270 2401 2.604462 GCTTTTATGGCCGAGCAAAATG 59.396 45.455 0.00 0.00 35.29 2.32
2474 2605 1.127951 CCGACCAACATCACGTAAAGC 59.872 52.381 0.00 0.00 0.00 3.51
2568 2699 3.305608 GCAACTTGTGGAATTGCTAAGCT 60.306 43.478 12.11 0.00 44.26 3.74
2584 2715 5.711976 AGATGTTTGGCTATAACTGCAACTT 59.288 36.000 0.00 0.00 0.00 2.66
2649 2780 1.935873 TGTAGTCCGGAATCGAGTACG 59.064 52.381 8.16 11.21 39.00 3.67
2668 2799 3.067180 GGCAGTCCATTGGTATGTGAATG 59.933 47.826 1.86 0.00 33.79 2.67
2680 2811 1.073923 AGAAGGTTTCGGCAGTCCATT 59.926 47.619 0.00 0.00 34.02 3.16
2998 3129 3.972227 CCGTCAGGCAGGAACTTG 58.028 61.111 0.00 0.00 34.60 3.16
3105 3236 5.817296 TGCACATACAGATATTCACAGGTTC 59.183 40.000 0.00 0.00 0.00 3.62
3130 3261 2.899838 ACAAACGCCGCTTCTGCA 60.900 55.556 0.00 0.00 39.64 4.41
3131 3262 2.427410 CACAAACGCCGCTTCTGC 60.427 61.111 0.00 0.00 0.00 4.26
3132 3263 2.252260 CCACAAACGCCGCTTCTG 59.748 61.111 0.00 0.00 0.00 3.02
3133 3264 2.203153 ACCACAAACGCCGCTTCT 60.203 55.556 0.00 0.00 0.00 2.85
3178 3309 1.523758 AACGGCACTCAATCTGGTTC 58.476 50.000 0.00 0.00 0.00 3.62
3179 3310 1.981256 AAACGGCACTCAATCTGGTT 58.019 45.000 0.00 0.00 0.00 3.67
3195 3326 6.183309 ACACTCTTCTTCTGAACACAAAAC 57.817 37.500 0.00 0.00 0.00 2.43
3205 3336 8.994429 ATGTACATTTCTACACTCTTCTTCTG 57.006 34.615 1.41 0.00 29.31 3.02
3285 3417 3.181484 TGTTAGACAACACACGCTACACT 60.181 43.478 0.00 0.00 39.75 3.55
3346 3483 2.928116 CGATTTCGGGTAAACACTCCTC 59.072 50.000 0.00 0.00 35.37 3.71
3353 3490 1.729284 TCCAGCGATTTCGGGTAAAC 58.271 50.000 1.75 0.00 40.23 2.01
3406 3584 0.318955 ATCACAAACCAGCTTTGCGC 60.319 50.000 0.00 0.00 42.87 6.09
3472 3650 2.504175 GGTAGGGTAGTCCTTGCATTGA 59.496 50.000 0.00 0.00 45.47 2.57
3497 3676 3.192103 AAAGGACCAGGTGTCGGGC 62.192 63.158 0.00 0.00 45.46 6.13
3512 3691 6.129115 CGGTTGTTAGCAATTGATCAACAAAG 60.129 38.462 22.21 17.91 39.88 2.77
3534 3713 1.535437 GCGGTCGATATTCTGTTCGGT 60.535 52.381 0.00 0.00 36.08 4.69
3535 3714 1.129326 GCGGTCGATATTCTGTTCGG 58.871 55.000 0.00 0.00 36.08 4.30
3544 3723 0.311165 CCTCGAACAGCGGTCGATAT 59.689 55.000 16.68 0.00 41.33 1.63
3569 3748 5.048013 CCCTCTAATCGCATACACTGATACA 60.048 44.000 0.00 0.00 0.00 2.29
3570 3749 5.403246 CCCTCTAATCGCATACACTGATAC 58.597 45.833 0.00 0.00 0.00 2.24
3571 3750 4.462834 CCCCTCTAATCGCATACACTGATA 59.537 45.833 0.00 0.00 0.00 2.15
3572 3751 3.259374 CCCCTCTAATCGCATACACTGAT 59.741 47.826 0.00 0.00 0.00 2.90
3573 3752 2.628178 CCCCTCTAATCGCATACACTGA 59.372 50.000 0.00 0.00 0.00 3.41
3574 3753 2.365617 ACCCCTCTAATCGCATACACTG 59.634 50.000 0.00 0.00 0.00 3.66
3575 3754 2.365617 CACCCCTCTAATCGCATACACT 59.634 50.000 0.00 0.00 0.00 3.55
3576 3755 2.548067 CCACCCCTCTAATCGCATACAC 60.548 54.545 0.00 0.00 0.00 2.90
3590 3769 2.091283 AACCTTTCCAGCCACCCCT 61.091 57.895 0.00 0.00 0.00 4.79
3617 3796 7.311092 TGAGACCAAAACTATGAAGAGGTAA 57.689 36.000 0.00 0.00 0.00 2.85
3690 3869 3.355378 TCAGGGATTGTTCGCAATTGAT 58.645 40.909 10.34 0.00 46.84 2.57
3691 3870 2.789213 TCAGGGATTGTTCGCAATTGA 58.211 42.857 10.34 0.00 46.84 2.57
3712 3894 3.338249 CACAACATGTCGATCCCTTCTT 58.662 45.455 0.00 0.00 0.00 2.52
3720 3902 1.339055 CCACCTCCACAACATGTCGAT 60.339 52.381 0.00 0.00 0.00 3.59
3721 3903 0.034756 CCACCTCCACAACATGTCGA 59.965 55.000 0.00 0.00 0.00 4.20
3729 3911 4.308458 CGCCGACCACCTCCACAA 62.308 66.667 0.00 0.00 0.00 3.33
3738 3920 3.770040 CCCTGACATCGCCGACCA 61.770 66.667 0.00 0.00 0.00 4.02
3739 3921 2.907897 CTTCCCTGACATCGCCGACC 62.908 65.000 0.00 0.00 0.00 4.79
3744 3926 0.530870 GGCTACTTCCCTGACATCGC 60.531 60.000 0.00 0.00 0.00 4.58
3752 3934 2.154567 TATGACACGGCTACTTCCCT 57.845 50.000 0.00 0.00 0.00 4.20
3764 3946 4.759782 AGTCAGGCTACAACATATGACAC 58.240 43.478 10.38 0.00 39.54 3.67
3809 3991 0.603707 ACACACACGCTCCTCCATTG 60.604 55.000 0.00 0.00 0.00 2.82
3810 3992 0.603707 CACACACACGCTCCTCCATT 60.604 55.000 0.00 0.00 0.00 3.16
3820 4002 3.015293 GAGATGGCGCACACACACG 62.015 63.158 10.83 0.00 0.00 4.49
3830 4012 7.693951 CACTACTAAAATTTTGAAGAGATGGCG 59.306 37.037 13.76 0.00 0.00 5.69
3832 4014 9.831737 CACACTACTAAAATTTTGAAGAGATGG 57.168 33.333 13.76 2.39 0.00 3.51
3835 4017 8.836413 CCACACACTACTAAAATTTTGAAGAGA 58.164 33.333 13.76 0.00 0.00 3.10
3836 4018 8.836413 TCCACACACTACTAAAATTTTGAAGAG 58.164 33.333 13.76 5.37 0.00 2.85
3837 4019 8.740123 TCCACACACTACTAAAATTTTGAAGA 57.260 30.769 13.76 0.00 0.00 2.87
3838 4020 9.450807 CTTCCACACACTACTAAAATTTTGAAG 57.549 33.333 13.76 6.43 0.00 3.02
3853 4043 0.179018 GGTTGGCTCTTCCACACACT 60.179 55.000 0.00 0.00 46.55 3.55
3879 4069 6.537660 GGTAGTGAAGGATGTATTGTACCAAC 59.462 42.308 0.00 0.00 0.00 3.77
3880 4070 6.213802 TGGTAGTGAAGGATGTATTGTACCAA 59.786 38.462 0.00 0.00 35.57 3.67
3881 4071 5.722441 TGGTAGTGAAGGATGTATTGTACCA 59.278 40.000 0.00 0.00 36.02 3.25
3882 4072 6.229936 TGGTAGTGAAGGATGTATTGTACC 57.770 41.667 0.00 0.00 0.00 3.34
3901 4091 4.264038 GGAAAGTTTAATCCCACCCTGGTA 60.264 45.833 0.00 0.00 35.17 3.25
3914 4104 2.903135 CAAGGGGGCATGGAAAGTTTAA 59.097 45.455 0.00 0.00 0.00 1.52
3928 4118 0.680921 ATCGCACAATGACAAGGGGG 60.681 55.000 0.00 0.00 0.00 5.40
3940 4131 3.430862 GCTTTCCGCCATCGCACA 61.431 61.111 0.00 0.00 34.03 4.57
3941 4132 4.520846 CGCTTTCCGCCATCGCAC 62.521 66.667 0.00 0.00 34.21 5.34
3943 4134 4.223964 GACGCTTTCCGCCATCGC 62.224 66.667 0.00 0.00 41.76 4.58
3944 4135 0.804544 TAAGACGCTTTCCGCCATCG 60.805 55.000 0.00 0.00 41.76 3.84
3945 4136 0.651031 GTAAGACGCTTTCCGCCATC 59.349 55.000 0.00 0.00 41.76 3.51
3946 4137 0.743345 GGTAAGACGCTTTCCGCCAT 60.743 55.000 0.00 0.00 41.76 4.40
3947 4138 1.375013 GGTAAGACGCTTTCCGCCA 60.375 57.895 0.00 0.00 41.76 5.69
3948 4139 1.079336 AGGTAAGACGCTTTCCGCC 60.079 57.895 8.70 0.00 41.76 6.13
3949 4140 1.411493 CGAGGTAAGACGCTTTCCGC 61.411 60.000 8.70 8.43 41.76 5.54
3950 4141 0.169672 TCGAGGTAAGACGCTTTCCG 59.830 55.000 8.70 0.00 44.21 4.30
3951 4142 2.461903 GATCGAGGTAAGACGCTTTCC 58.538 52.381 7.01 7.01 0.00 3.13
3952 4143 2.110226 CGATCGAGGTAAGACGCTTTC 58.890 52.381 10.26 0.00 0.00 2.62
3953 4144 1.202268 CCGATCGAGGTAAGACGCTTT 60.202 52.381 18.66 0.00 0.00 3.51
3954 4145 0.381089 CCGATCGAGGTAAGACGCTT 59.619 55.000 18.66 0.00 0.00 4.68
3955 4146 0.463295 TCCGATCGAGGTAAGACGCT 60.463 55.000 18.66 0.00 0.00 5.07
3956 4147 0.041135 CTCCGATCGAGGTAAGACGC 60.041 60.000 18.66 0.00 34.67 5.19
3965 4156 3.967335 GCGTCCCCTCCGATCGAG 61.967 72.222 18.66 11.81 38.46 4.04
3981 4172 1.856597 CTGCCTATAAACACGTACGGC 59.143 52.381 21.06 10.15 36.64 5.68
3982 4173 2.466846 CCTGCCTATAAACACGTACGG 58.533 52.381 21.06 11.05 0.00 4.02
3983 4174 2.466846 CCCTGCCTATAAACACGTACG 58.533 52.381 15.01 15.01 0.00 3.67
3984 4175 2.830104 CCCCTGCCTATAAACACGTAC 58.170 52.381 0.00 0.00 0.00 3.67
3985 4176 1.139455 GCCCCTGCCTATAAACACGTA 59.861 52.381 0.00 0.00 0.00 3.57
3986 4177 0.107361 GCCCCTGCCTATAAACACGT 60.107 55.000 0.00 0.00 0.00 4.49
3987 4178 1.157870 CGCCCCTGCCTATAAACACG 61.158 60.000 0.00 0.00 0.00 4.49
3988 4179 1.444917 GCGCCCCTGCCTATAAACAC 61.445 60.000 0.00 0.00 0.00 3.32
3989 4180 1.153046 GCGCCCCTGCCTATAAACA 60.153 57.895 0.00 0.00 0.00 2.83
3990 4181 1.153046 TGCGCCCCTGCCTATAAAC 60.153 57.895 4.18 0.00 0.00 2.01
3991 4182 1.153046 GTGCGCCCCTGCCTATAAA 60.153 57.895 4.18 0.00 0.00 1.40
3992 4183 2.508928 GTGCGCCCCTGCCTATAA 59.491 61.111 4.18 0.00 0.00 0.98
3993 4184 3.556306 GGTGCGCCCCTGCCTATA 61.556 66.667 4.45 0.00 0.00 1.31
4002 4193 3.161450 TATCAGGGAGGTGCGCCC 61.161 66.667 14.07 5.76 44.04 6.13
4003 4194 2.423446 CTATCAGGGAGGTGCGCC 59.577 66.667 8.71 8.71 0.00 6.53
4004 4195 2.280457 GCTATCAGGGAGGTGCGC 60.280 66.667 0.00 0.00 0.00 6.09
4005 4196 2.028190 CGCTATCAGGGAGGTGCG 59.972 66.667 0.00 0.00 37.57 5.34
4006 4197 2.280457 GCGCTATCAGGGAGGTGC 60.280 66.667 0.00 0.00 0.00 5.01
4007 4198 0.969149 TATGCGCTATCAGGGAGGTG 59.031 55.000 9.73 0.00 0.00 4.00
4008 4199 0.969894 GTATGCGCTATCAGGGAGGT 59.030 55.000 9.73 0.00 0.00 3.85
4009 4200 0.969149 TGTATGCGCTATCAGGGAGG 59.031 55.000 9.73 0.00 0.00 4.30
4010 4201 1.615883 ACTGTATGCGCTATCAGGGAG 59.384 52.381 22.22 7.09 32.92 4.30
4011 4202 1.704641 ACTGTATGCGCTATCAGGGA 58.295 50.000 22.22 0.00 32.92 4.20
4012 4203 2.533266 AACTGTATGCGCTATCAGGG 57.467 50.000 22.22 6.55 32.92 4.45
4013 4204 4.871513 TCTAAACTGTATGCGCTATCAGG 58.128 43.478 22.22 10.47 32.92 3.86
4014 4205 7.595130 TGTAATCTAAACTGTATGCGCTATCAG 59.405 37.037 9.73 15.78 0.00 2.90
4015 4206 7.430441 TGTAATCTAAACTGTATGCGCTATCA 58.570 34.615 9.73 3.82 0.00 2.15
4016 4207 7.869016 TGTAATCTAAACTGTATGCGCTATC 57.131 36.000 9.73 0.00 0.00 2.08
4017 4208 8.467402 GATGTAATCTAAACTGTATGCGCTAT 57.533 34.615 9.73 3.00 41.17 2.97
4018 4209 7.869016 GATGTAATCTAAACTGTATGCGCTA 57.131 36.000 9.73 0.00 41.17 4.26
4019 4210 6.771188 GATGTAATCTAAACTGTATGCGCT 57.229 37.500 9.73 0.00 41.17 5.92
4034 4225 9.377312 ACTTAGCTTCTTCTTCAAGATGTAATC 57.623 33.333 0.00 0.00 46.04 1.75
4036 4227 9.862371 CTACTTAGCTTCTTCTTCAAGATGTAA 57.138 33.333 0.00 0.00 38.50 2.41
4037 4228 9.244292 TCTACTTAGCTTCTTCTTCAAGATGTA 57.756 33.333 0.00 0.00 38.50 2.29
4038 4229 8.128322 TCTACTTAGCTTCTTCTTCAAGATGT 57.872 34.615 0.00 0.00 38.50 3.06
4039 4230 8.465999 TCTCTACTTAGCTTCTTCTTCAAGATG 58.534 37.037 0.00 0.00 38.50 2.90
4040 4231 8.588290 TCTCTACTTAGCTTCTTCTTCAAGAT 57.412 34.615 0.00 0.00 38.50 2.40
4041 4232 8.588290 ATCTCTACTTAGCTTCTTCTTCAAGA 57.412 34.615 0.00 0.00 36.82 3.02
4044 4235 9.688091 TCTTATCTCTACTTAGCTTCTTCTTCA 57.312 33.333 0.00 0.00 0.00 3.02
4057 4248 9.793259 CTCCTCTCTGTAATCTTATCTCTACTT 57.207 37.037 0.00 0.00 0.00 2.24
4058 4249 9.166222 TCTCCTCTCTGTAATCTTATCTCTACT 57.834 37.037 0.00 0.00 0.00 2.57
4059 4250 9.959721 ATCTCCTCTCTGTAATCTTATCTCTAC 57.040 37.037 0.00 0.00 0.00 2.59
4068 4259 9.793259 CTAGAGTTTATCTCCTCTCTGTAATCT 57.207 37.037 0.00 0.00 43.71 2.40
4069 4260 8.512138 GCTAGAGTTTATCTCCTCTCTGTAATC 58.488 40.741 0.00 0.00 43.71 1.75
4070 4261 8.224720 AGCTAGAGTTTATCTCCTCTCTGTAAT 58.775 37.037 0.00 0.00 43.71 1.89
4071 4262 7.579105 AGCTAGAGTTTATCTCCTCTCTGTAA 58.421 38.462 0.00 0.00 43.71 2.41
4072 4263 7.144234 AGCTAGAGTTTATCTCCTCTCTGTA 57.856 40.000 0.00 0.00 43.71 2.74
4073 4264 6.013554 AGCTAGAGTTTATCTCCTCTCTGT 57.986 41.667 0.00 0.00 43.71 3.41
4074 4265 7.040686 GGTTAGCTAGAGTTTATCTCCTCTCTG 60.041 44.444 0.00 0.00 43.71 3.35
4075 4266 7.002276 GGTTAGCTAGAGTTTATCTCCTCTCT 58.998 42.308 0.00 0.00 43.71 3.10
4076 4267 6.773685 TGGTTAGCTAGAGTTTATCTCCTCTC 59.226 42.308 0.00 0.00 43.71 3.20
4077 4268 6.548251 GTGGTTAGCTAGAGTTTATCTCCTCT 59.452 42.308 0.00 0.00 43.71 3.69
4078 4269 6.239092 GGTGGTTAGCTAGAGTTTATCTCCTC 60.239 46.154 0.00 0.00 43.71 3.71
4079 4270 5.599242 GGTGGTTAGCTAGAGTTTATCTCCT 59.401 44.000 0.00 0.00 43.71 3.69
4080 4271 5.845103 GGTGGTTAGCTAGAGTTTATCTCC 58.155 45.833 0.00 0.00 43.71 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.