Multiple sequence alignment - TraesCS5A01G069100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G069100 chr5A 100.000 4522 0 0 1 4522 77784543 77789064 0.000000e+00 8351.0
1 TraesCS5A01G069100 chr5A 84.424 443 36 9 293 728 77749067 77749483 5.450000e-109 405.0
2 TraesCS5A01G069100 chr5A 86.923 260 20 10 220 478 77756698 77756944 3.440000e-71 279.0
3 TraesCS5A01G069100 chr5A 80.000 380 42 14 406 757 601481549 601481922 2.700000e-62 250.0
4 TraesCS5A01G069100 chr5A 97.222 36 1 0 2950 2985 29182894 29182929 1.360000e-05 62.1
5 TraesCS5A01G069100 chr5A 94.872 39 2 0 2947 2985 328081346 328081308 1.360000e-05 62.1
6 TraesCS5A01G069100 chr5D 92.930 3508 147 42 227 3688 81731732 81735184 0.000000e+00 5011.0
7 TraesCS5A01G069100 chr5D 94.345 336 14 3 3845 4180 81759318 81759648 1.120000e-140 510.0
8 TraesCS5A01G069100 chr5D 87.133 443 41 10 293 728 81730112 81730545 5.260000e-134 488.0
9 TraesCS5A01G069100 chr5D 95.434 219 9 1 4177 4394 81780575 81780793 9.310000e-92 348.0
10 TraesCS5A01G069100 chr5D 94.574 129 7 0 3719 3847 81756159 81756287 2.760000e-47 200.0
11 TraesCS5A01G069100 chr5D 80.365 219 33 7 495 704 457340806 457341023 1.680000e-34 158.0
12 TraesCS5A01G069100 chr5D 97.297 37 1 0 2949 2985 40980222 40980258 3.780000e-06 63.9
13 TraesCS5A01G069100 chr5D 97.222 36 1 0 2950 2985 40970474 40970509 1.360000e-05 62.1
14 TraesCS5A01G069100 chr5D 94.872 39 2 0 2947 2985 243880261 243880223 1.360000e-05 62.1
15 TraesCS5A01G069100 chr5B 92.516 3287 170 38 462 3701 90072896 90076153 0.000000e+00 4638.0
16 TraesCS5A01G069100 chr5B 92.952 525 31 1 3735 4259 90180310 90180828 0.000000e+00 760.0
17 TraesCS5A01G069100 chr5B 93.365 211 11 3 4310 4517 90180840 90181050 4.390000e-80 309.0
18 TraesCS5A01G069100 chr5B 79.890 363 53 9 406 753 528991790 528991433 9.710000e-62 248.0
19 TraesCS5A01G069100 chr5B 97.297 37 1 0 2949 2985 35157698 35157734 3.780000e-06 63.9
20 TraesCS5A01G069100 chr5B 97.222 36 1 0 2950 2985 35148497 35148532 1.360000e-05 62.1
21 TraesCS5A01G069100 chr5B 94.872 39 2 0 2947 2985 277129224 277129186 1.360000e-05 62.1
22 TraesCS5A01G069100 chr7A 95.714 210 9 0 1 210 646535130 646534921 5.600000e-89 339.0
23 TraesCS5A01G069100 chr7A 94.860 214 10 1 1 214 520448025 520448237 2.610000e-87 333.0
24 TraesCS5A01G069100 chr3A 96.135 207 8 0 1 207 187181762 187181968 5.600000e-89 339.0
25 TraesCS5A01G069100 chr3A 78.933 356 54 16 411 751 569270021 569270370 5.890000e-54 222.0
26 TraesCS5A01G069100 chr3A 78.967 271 39 11 495 757 635178442 635178702 7.780000e-38 169.0
27 TraesCS5A01G069100 chr3D 95.261 211 8 2 1 210 372044894 372045103 2.610000e-87 333.0
28 TraesCS5A01G069100 chr3D 79.508 366 48 11 411 757 448532319 448532676 7.560000e-58 235.0
29 TraesCS5A01G069100 chr2A 94.860 214 10 1 1 213 43111927 43112140 2.610000e-87 333.0
30 TraesCS5A01G069100 chr2A 79.808 104 18 2 409 510 686854342 686854240 6.270000e-09 73.1
31 TraesCS5A01G069100 chr1A 95.238 210 10 0 1 210 341500991 341500782 2.610000e-87 333.0
32 TraesCS5A01G069100 chr1A 95.238 210 10 0 1 210 412555380 412555589 2.610000e-87 333.0
33 TraesCS5A01G069100 chr1A 91.810 232 18 1 1 232 376002933 376002703 5.640000e-84 322.0
34 TraesCS5A01G069100 chr7D 91.845 233 13 5 1 229 85086042 85085812 2.030000e-83 320.0
35 TraesCS5A01G069100 chr7D 82.097 391 47 13 408 785 54211548 54211168 3.400000e-81 313.0
36 TraesCS5A01G069100 chr7D 82.210 371 41 13 402 757 550024653 550025013 3.420000e-76 296.0
37 TraesCS5A01G069100 chr1D 80.964 394 50 14 411 785 467613898 467613511 5.720000e-74 289.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G069100 chr5A 77784543 77789064 4521 False 8351.0 8351 100.0000 1 4522 1 chr5A.!!$F4 4521
1 TraesCS5A01G069100 chr5D 81730112 81735184 5072 False 2749.5 5011 90.0315 227 3688 2 chr5D.!!$F5 3461
2 TraesCS5A01G069100 chr5D 81756159 81759648 3489 False 355.0 510 94.4595 3719 4180 2 chr5D.!!$F6 461
3 TraesCS5A01G069100 chr5B 90072896 90076153 3257 False 4638.0 4638 92.5160 462 3701 1 chr5B.!!$F3 3239
4 TraesCS5A01G069100 chr5B 90180310 90181050 740 False 534.5 760 93.1585 3735 4517 2 chr5B.!!$F4 782

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
79 80 0.179045 CCGTATTGCCTAGCTTGCCT 60.179 55.000 0.00 0.0 0.0 4.75 F
1329 2764 0.175760 ATGCTATGTATAGGCCGGCG 59.824 55.000 22.54 0.0 0.0 6.46 F
2202 3637 1.079405 TTCTTGGTCGTCGGCATCC 60.079 57.895 0.00 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1835 3270 0.026803 GCGCGATGAAGATGGTGAAC 59.973 55.0 12.10 0.0 0.00 3.18 R
3146 4581 0.835941 ACTCTATGGGCAGCAGGAAG 59.164 55.0 0.00 0.0 0.00 3.46 R
3701 5156 0.512952 GAACGTATGATGCGGATGCC 59.487 55.0 7.97 0.0 41.78 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.284493 CGGAGGGGGCTAGGGTTA 59.716 66.667 0.00 0.00 0.00 2.85
25 26 2.138831 CGGAGGGGGCTAGGGTTAC 61.139 68.421 0.00 0.00 0.00 2.50
27 28 1.343431 GGAGGGGGCTAGGGTTACAC 61.343 65.000 0.00 0.00 0.00 2.90
28 29 0.619543 GAGGGGGCTAGGGTTACACA 60.620 60.000 0.00 0.00 0.00 3.72
29 30 0.620700 AGGGGGCTAGGGTTACACAG 60.621 60.000 0.00 0.00 0.00 3.66
30 31 0.619543 GGGGGCTAGGGTTACACAGA 60.620 60.000 0.00 0.00 0.00 3.41
31 32 0.831307 GGGGCTAGGGTTACACAGAG 59.169 60.000 0.00 0.00 0.00 3.35
32 33 1.569653 GGGCTAGGGTTACACAGAGT 58.430 55.000 0.00 0.00 0.00 3.24
33 34 1.907255 GGGCTAGGGTTACACAGAGTT 59.093 52.381 0.00 0.00 0.00 3.01
34 35 2.354805 GGGCTAGGGTTACACAGAGTTG 60.355 54.545 0.00 0.00 0.00 3.16
35 36 2.354805 GGCTAGGGTTACACAGAGTTGG 60.355 54.545 0.00 0.00 0.00 3.77
36 37 2.302157 GCTAGGGTTACACAGAGTTGGT 59.698 50.000 0.00 0.00 0.00 3.67
38 39 4.020839 GCTAGGGTTACACAGAGTTGGTTA 60.021 45.833 0.00 0.00 0.00 2.85
39 40 4.347360 AGGGTTACACAGAGTTGGTTAC 57.653 45.455 0.00 0.00 0.00 2.50
40 41 3.712733 AGGGTTACACAGAGTTGGTTACA 59.287 43.478 0.00 0.00 0.00 2.41
41 42 4.164604 AGGGTTACACAGAGTTGGTTACAA 59.835 41.667 0.00 0.00 0.00 2.41
42 43 4.514066 GGGTTACACAGAGTTGGTTACAAG 59.486 45.833 0.00 0.00 37.25 3.16
43 44 4.514066 GGTTACACAGAGTTGGTTACAAGG 59.486 45.833 0.00 0.00 37.25 3.61
44 45 3.208747 ACACAGAGTTGGTTACAAGGG 57.791 47.619 0.00 0.00 37.25 3.95
46 47 3.181454 ACACAGAGTTGGTTACAAGGGAG 60.181 47.826 0.00 0.00 37.25 4.30
47 48 2.372172 ACAGAGTTGGTTACAAGGGAGG 59.628 50.000 0.00 0.00 37.25 4.30
50 51 2.904434 GAGTTGGTTACAAGGGAGGAGA 59.096 50.000 0.00 0.00 37.25 3.71
51 52 3.519913 GAGTTGGTTACAAGGGAGGAGAT 59.480 47.826 0.00 0.00 37.25 2.75
52 53 3.519913 AGTTGGTTACAAGGGAGGAGATC 59.480 47.826 0.00 0.00 37.25 2.75
53 54 3.491766 TGGTTACAAGGGAGGAGATCT 57.508 47.619 0.00 0.00 0.00 2.75
54 55 3.803340 TGGTTACAAGGGAGGAGATCTT 58.197 45.455 0.00 0.00 0.00 2.40
56 57 3.775316 GGTTACAAGGGAGGAGATCTTCA 59.225 47.826 3.21 0.00 0.00 3.02
57 58 4.410555 GGTTACAAGGGAGGAGATCTTCAT 59.589 45.833 3.21 0.00 0.00 2.57
59 60 6.271159 GGTTACAAGGGAGGAGATCTTCATAT 59.729 42.308 3.21 0.00 0.00 1.78
60 61 7.382898 GTTACAAGGGAGGAGATCTTCATATC 58.617 42.308 3.21 0.00 0.00 1.63
61 62 4.843516 ACAAGGGAGGAGATCTTCATATCC 59.156 45.833 3.21 1.32 40.35 2.59
62 63 3.707316 AGGGAGGAGATCTTCATATCCG 58.293 50.000 3.21 0.00 44.22 4.18
65 66 5.043732 AGGGAGGAGATCTTCATATCCGTAT 60.044 44.000 3.21 0.00 44.22 3.06
66 67 5.659079 GGGAGGAGATCTTCATATCCGTATT 59.341 44.000 3.21 0.00 44.22 1.89
67 68 6.406400 GGGAGGAGATCTTCATATCCGTATTG 60.406 46.154 3.21 0.00 44.22 1.90
68 69 5.971763 AGGAGATCTTCATATCCGTATTGC 58.028 41.667 3.21 0.00 44.22 3.56
69 70 5.105146 AGGAGATCTTCATATCCGTATTGCC 60.105 44.000 3.21 0.00 44.22 4.52
71 72 6.096987 GGAGATCTTCATATCCGTATTGCCTA 59.903 42.308 0.00 0.00 30.60 3.93
72 73 7.106439 AGATCTTCATATCCGTATTGCCTAG 57.894 40.000 0.00 0.00 0.00 3.02
73 74 5.073311 TCTTCATATCCGTATTGCCTAGC 57.927 43.478 0.00 0.00 0.00 3.42
74 75 4.772624 TCTTCATATCCGTATTGCCTAGCT 59.227 41.667 0.00 0.00 0.00 3.32
75 76 5.246203 TCTTCATATCCGTATTGCCTAGCTT 59.754 40.000 0.00 0.00 0.00 3.74
76 77 4.820897 TCATATCCGTATTGCCTAGCTTG 58.179 43.478 0.00 0.00 0.00 4.01
77 78 1.884235 ATCCGTATTGCCTAGCTTGC 58.116 50.000 0.00 0.00 0.00 4.01
78 79 0.179056 TCCGTATTGCCTAGCTTGCC 60.179 55.000 0.00 0.00 0.00 4.52
79 80 0.179045 CCGTATTGCCTAGCTTGCCT 60.179 55.000 0.00 0.00 0.00 4.75
80 81 1.668419 CGTATTGCCTAGCTTGCCTT 58.332 50.000 0.00 0.00 0.00 4.35
81 82 1.599542 CGTATTGCCTAGCTTGCCTTC 59.400 52.381 0.00 0.00 0.00 3.46
82 83 1.950216 GTATTGCCTAGCTTGCCTTCC 59.050 52.381 0.00 0.00 0.00 3.46
83 84 0.332632 ATTGCCTAGCTTGCCTTCCA 59.667 50.000 0.00 0.00 0.00 3.53
84 85 0.609131 TTGCCTAGCTTGCCTTCCAC 60.609 55.000 0.00 0.00 0.00 4.02
85 86 2.109126 GCCTAGCTTGCCTTCCACG 61.109 63.158 0.00 0.00 0.00 4.94
86 87 2.109126 CCTAGCTTGCCTTCCACGC 61.109 63.158 0.00 0.00 38.87 5.34
87 88 2.046314 TAGCTTGCCTTCCACGCC 60.046 61.111 0.00 0.00 39.36 5.68
89 90 2.404566 TAGCTTGCCTTCCACGCCAA 62.405 55.000 0.00 0.00 39.36 4.52
91 92 2.597217 TTGCCTTCCACGCCAAGG 60.597 61.111 3.73 3.73 43.13 3.61
93 94 2.747855 GCCTTCCACGCCAAGGAG 60.748 66.667 10.97 0.00 42.94 3.69
94 95 3.068881 CCTTCCACGCCAAGGAGA 58.931 61.111 2.12 0.00 42.94 3.71
95 96 1.078848 CCTTCCACGCCAAGGAGAG 60.079 63.158 2.12 0.00 42.94 3.20
96 97 1.674057 CTTCCACGCCAAGGAGAGT 59.326 57.895 0.00 0.00 36.33 3.24
97 98 0.390472 CTTCCACGCCAAGGAGAGTC 60.390 60.000 0.00 0.00 36.33 3.36
98 99 1.827399 TTCCACGCCAAGGAGAGTCC 61.827 60.000 0.00 0.00 36.33 3.85
99 100 2.266055 CACGCCAAGGAGAGTCCC 59.734 66.667 0.00 0.00 37.19 4.46
101 102 1.613630 ACGCCAAGGAGAGTCCCAT 60.614 57.895 0.00 0.00 37.19 4.00
103 104 1.529309 GCCAAGGAGAGTCCCATCC 59.471 63.158 0.00 0.00 37.19 3.51
104 105 1.274703 GCCAAGGAGAGTCCCATCCA 61.275 60.000 0.18 0.00 37.19 3.41
105 106 0.835941 CCAAGGAGAGTCCCATCCAG 59.164 60.000 0.18 0.00 37.19 3.86
106 107 1.623557 CCAAGGAGAGTCCCATCCAGA 60.624 57.143 0.18 0.00 37.19 3.86
107 108 1.484240 CAAGGAGAGTCCCATCCAGAC 59.516 57.143 0.18 0.00 37.19 3.51
108 109 0.712979 AGGAGAGTCCCATCCAGACA 59.287 55.000 0.18 0.00 37.19 3.41
109 110 0.827368 GGAGAGTCCCATCCAGACAC 59.173 60.000 0.00 0.00 36.68 3.67
111 112 0.972983 AGAGTCCCATCCAGACACGG 60.973 60.000 0.00 0.00 36.68 4.94
113 114 1.987855 GTCCCATCCAGACACGGGA 60.988 63.158 0.00 0.00 45.66 5.14
114 115 1.987855 TCCCATCCAGACACGGGAC 60.988 63.158 0.00 0.00 42.94 4.46
138 139 7.378966 ACGAAGTCTTCAATCTTGTATCTTCA 58.621 34.615 12.99 0.00 29.74 3.02
139 140 8.037758 ACGAAGTCTTCAATCTTGTATCTTCAT 58.962 33.333 12.99 0.00 29.74 2.57
144 145 9.255304 GTCTTCAATCTTGTATCTTCATAGTCC 57.745 37.037 0.00 0.00 0.00 3.85
146 147 9.605275 CTTCAATCTTGTATCTTCATAGTCCAA 57.395 33.333 0.00 0.00 0.00 3.53
148 149 8.539544 TCAATCTTGTATCTTCATAGTCCAACA 58.460 33.333 0.00 0.00 0.00 3.33
149 150 8.824781 CAATCTTGTATCTTCATAGTCCAACAG 58.175 37.037 0.00 0.00 0.00 3.16
150 151 7.482169 TCTTGTATCTTCATAGTCCAACAGT 57.518 36.000 0.00 0.00 0.00 3.55
151 152 7.548097 TCTTGTATCTTCATAGTCCAACAGTC 58.452 38.462 0.00 0.00 0.00 3.51
152 153 6.222038 TGTATCTTCATAGTCCAACAGTCC 57.778 41.667 0.00 0.00 0.00 3.85
153 154 3.868757 TCTTCATAGTCCAACAGTCCG 57.131 47.619 0.00 0.00 0.00 4.79
155 156 1.933021 TCATAGTCCAACAGTCCGGT 58.067 50.000 0.00 0.00 0.00 5.28
156 157 1.822990 TCATAGTCCAACAGTCCGGTC 59.177 52.381 0.00 0.00 0.00 4.79
157 158 1.548719 CATAGTCCAACAGTCCGGTCA 59.451 52.381 0.00 0.00 0.00 4.02
159 160 0.834612 AGTCCAACAGTCCGGTCAAA 59.165 50.000 0.00 0.00 0.00 2.69
160 161 1.202651 AGTCCAACAGTCCGGTCAAAG 60.203 52.381 0.00 0.00 0.00 2.77
163 164 2.105821 TCCAACAGTCCGGTCAAAGAAT 59.894 45.455 0.00 0.00 0.00 2.40
164 165 3.325425 TCCAACAGTCCGGTCAAAGAATA 59.675 43.478 0.00 0.00 0.00 1.75
166 167 5.188163 TCCAACAGTCCGGTCAAAGAATATA 59.812 40.000 0.00 0.00 0.00 0.86
168 169 5.934402 ACAGTCCGGTCAAAGAATATAGT 57.066 39.130 0.00 0.00 0.00 2.12
169 170 5.903810 ACAGTCCGGTCAAAGAATATAGTC 58.096 41.667 0.00 0.00 0.00 2.59
170 171 5.163437 ACAGTCCGGTCAAAGAATATAGTCC 60.163 44.000 0.00 0.00 0.00 3.85
171 172 4.037684 AGTCCGGTCAAAGAATATAGTCCG 59.962 45.833 0.00 0.00 37.04 4.79
173 174 3.057734 CGGTCAAAGAATATAGTCCGGC 58.942 50.000 0.00 0.00 34.24 6.13
174 175 3.243771 CGGTCAAAGAATATAGTCCGGCT 60.244 47.826 0.00 0.00 34.24 5.52
175 176 4.058817 GGTCAAAGAATATAGTCCGGCTG 58.941 47.826 0.00 0.00 0.00 4.85
178 179 4.058817 CAAAGAATATAGTCCGGCTGTCC 58.941 47.826 0.00 0.00 0.00 4.02
179 180 2.249139 AGAATATAGTCCGGCTGTCCC 58.751 52.381 0.00 0.00 0.00 4.46
193 194 0.689745 TGTCCCGAGACCCCCTAATG 60.690 60.000 0.00 0.00 42.81 1.90
194 195 1.764854 TCCCGAGACCCCCTAATGC 60.765 63.158 0.00 0.00 0.00 3.56
195 196 2.070039 CCCGAGACCCCCTAATGCA 61.070 63.158 0.00 0.00 0.00 3.96
196 197 1.447643 CCGAGACCCCCTAATGCAG 59.552 63.158 0.00 0.00 0.00 4.41
197 198 1.447643 CGAGACCCCCTAATGCAGG 59.552 63.158 0.00 0.00 45.07 4.85
212 213 3.116096 TGCAGGACTCCCTTAGTATGT 57.884 47.619 0.00 0.00 42.02 2.29
214 215 3.301274 GCAGGACTCCCTTAGTATGTCT 58.699 50.000 0.00 0.00 42.02 3.41
215 216 3.707102 GCAGGACTCCCTTAGTATGTCTT 59.293 47.826 0.00 0.00 42.02 3.01
216 217 4.162509 GCAGGACTCCCTTAGTATGTCTTT 59.837 45.833 0.00 0.00 42.02 2.52
217 218 5.363005 GCAGGACTCCCTTAGTATGTCTTTA 59.637 44.000 0.00 0.00 42.02 1.85
218 219 6.127140 GCAGGACTCCCTTAGTATGTCTTTAA 60.127 42.308 0.00 0.00 42.02 1.52
219 220 7.580882 GCAGGACTCCCTTAGTATGTCTTTAAA 60.581 40.741 0.00 0.00 42.02 1.52
220 221 8.319146 CAGGACTCCCTTAGTATGTCTTTAAAA 58.681 37.037 0.00 0.00 42.02 1.52
221 222 8.887393 AGGACTCCCTTAGTATGTCTTTAAAAA 58.113 33.333 0.00 0.00 40.78 1.94
312 1707 6.881570 AGCCCTCATGGAATTTATTTCTTTG 58.118 36.000 0.00 0.00 35.39 2.77
409 1806 1.770294 AAACTTCCTTTTGCGGGACA 58.230 45.000 0.00 0.00 31.94 4.02
460 1857 6.660521 TGAGCTTGGATGAACAGTAAATTCAT 59.339 34.615 0.00 0.00 46.93 2.57
519 1926 6.933130 GGCAAACTTTGACAAATGTTCTAAC 58.067 36.000 5.65 0.00 38.99 2.34
522 1929 7.275560 GCAAACTTTGACAAATGTTCTAACAGT 59.724 33.333 5.65 0.00 43.04 3.55
534 1941 8.546597 AATGTTCTAACAGTTTGCAAAGTTTT 57.453 26.923 16.91 18.31 43.04 2.43
571 1978 0.310854 GTGGAAGTCGTGGCAAAAGG 59.689 55.000 0.00 0.00 0.00 3.11
583 1990 5.095490 CGTGGCAAAAGGAAATCAATACTC 58.905 41.667 0.00 0.00 0.00 2.59
596 2003 8.131731 GGAAATCAATACTCTGAAAATGCTACC 58.868 37.037 0.00 0.00 0.00 3.18
614 2021 3.643159 ACCTTCGAAAGCATTTTGGAC 57.357 42.857 0.00 0.00 39.27 4.02
695 2108 9.346725 CTCTTAGAATATTTGTCAAAGTTTGCC 57.653 33.333 10.90 0.00 0.00 4.52
697 2110 8.810652 TTAGAATATTTGTCAAAGTTTGCCAC 57.189 30.769 10.90 5.68 0.00 5.01
760 2173 9.893634 TTTTTCGAGTTATTGTTCATCCCTATA 57.106 29.630 0.00 0.00 0.00 1.31
772 2185 3.854666 CATCCCTATAAGCTCGGATGTG 58.145 50.000 14.16 0.00 44.49 3.21
786 2199 0.244721 GATGTGGAAGGGCACTTTGC 59.755 55.000 0.84 0.00 44.08 3.68
816 2229 2.534757 GTGGTTATTAAGAGAGCGCGAC 59.465 50.000 12.10 2.22 0.00 5.19
820 2233 2.351336 ATTAAGAGAGCGCGACCCCG 62.351 60.000 12.10 0.00 39.16 5.73
835 2248 0.460311 CCCCGATAAACTGAGCGACT 59.540 55.000 0.00 0.00 0.00 4.18
836 2249 1.134788 CCCCGATAAACTGAGCGACTT 60.135 52.381 0.00 0.00 0.00 3.01
837 2250 2.618053 CCCGATAAACTGAGCGACTTT 58.382 47.619 0.00 0.00 0.00 2.66
838 2251 3.000727 CCCGATAAACTGAGCGACTTTT 58.999 45.455 0.00 0.00 0.00 2.27
857 2270 3.047877 GTGCTCCACGTTTCCCGG 61.048 66.667 0.00 0.00 42.24 5.73
862 2275 2.125202 CTCCACGTTTCCCGGCAAAC 62.125 60.000 11.17 11.17 42.24 2.93
925 2338 1.265568 CTTGCATGCAAGCATCGAAC 58.734 50.000 39.24 0.00 45.38 3.95
1052 2465 1.153269 GCCTCTACTGCTTGGAGCC 60.153 63.158 0.00 0.00 41.51 4.70
1055 2468 0.615331 CTCTACTGCTTGGAGCCCAA 59.385 55.000 6.50 6.50 41.51 4.12
1158 2574 3.557475 GCATCATCTTCATCCTCTCCCAG 60.557 52.174 0.00 0.00 0.00 4.45
1228 2644 2.985486 GATCCTCGTACGTGCGCTCC 62.985 65.000 21.69 4.76 0.00 4.70
1230 2646 3.812019 CTCGTACGTGCGCTCCCT 61.812 66.667 21.69 0.00 0.00 4.20
1243 2678 1.598701 GCTCCCTGGCCATTGTTGTC 61.599 60.000 5.51 0.00 0.00 3.18
1251 2686 0.523335 GCCATTGTTGTCCGCGATTC 60.523 55.000 8.23 0.00 0.00 2.52
1329 2764 0.175760 ATGCTATGTATAGGCCGGCG 59.824 55.000 22.54 0.00 0.00 6.46
1371 2806 4.814294 GCCACTACCTCCCGCACG 62.814 72.222 0.00 0.00 0.00 5.34
1395 2830 3.371097 GAGATCTTCGCCACGCCCA 62.371 63.158 0.00 0.00 0.00 5.36
1396 2831 2.892425 GATCTTCGCCACGCCCAG 60.892 66.667 0.00 0.00 0.00 4.45
1445 2880 1.805945 CTACGCCTTCACGCTCCAC 60.806 63.158 0.00 0.00 36.19 4.02
1835 3270 3.462333 CTTCGCCTCCTCGCTCTCG 62.462 68.421 0.00 0.00 0.00 4.04
1907 3342 2.981302 CTGATCAGGGACGTGCCA 59.019 61.111 28.90 8.96 38.95 4.92
1925 3360 3.934962 GAGGGCGGCATCCTCTCC 61.935 72.222 13.23 0.12 45.46 3.71
2202 3637 1.079405 TTCTTGGTCGTCGGCATCC 60.079 57.895 0.00 0.00 0.00 3.51
2352 3787 2.738521 CCAAGGTGCTGGACGACG 60.739 66.667 0.00 0.00 38.96 5.12
2375 3810 1.821241 CGTACGCGGCCTTCATGATG 61.821 60.000 12.47 0.00 0.00 3.07
2735 4170 1.941668 GCCTTCCAGTTCTTCGTGGAG 60.942 57.143 0.00 0.00 43.80 3.86
3158 4593 4.722700 TTCCGCTTCCTGCTGCCC 62.723 66.667 0.00 0.00 40.11 5.36
3176 4611 1.142531 CATAGAGTGGCAGCAGCGA 59.857 57.895 0.00 0.00 43.41 4.93
3233 4668 2.504244 CAGGAGTTCGTCGACCGC 60.504 66.667 10.58 0.00 36.19 5.68
3262 4697 1.435577 GACAACCGGGTCATGTACAC 58.564 55.000 6.32 0.00 37.73 2.90
3314 4749 1.447314 GGACGTCATCCGGAACACC 60.447 63.158 18.91 6.00 42.24 4.16
3320 4755 2.100631 CATCCGGAACACCAGCGTC 61.101 63.158 9.01 0.00 0.00 5.19
3338 4773 2.507324 GCCTTCGACCTGCTCGTC 60.507 66.667 0.00 0.00 43.45 4.20
3522 4957 1.207329 GTGAGCTCTACCCCGTTTGAT 59.793 52.381 16.19 0.00 0.00 2.57
3523 4958 1.906574 TGAGCTCTACCCCGTTTGATT 59.093 47.619 16.19 0.00 0.00 2.57
3524 4959 2.304761 TGAGCTCTACCCCGTTTGATTT 59.695 45.455 16.19 0.00 0.00 2.17
3525 4960 2.678336 GAGCTCTACCCCGTTTGATTTG 59.322 50.000 6.43 0.00 0.00 2.32
3526 4961 2.304761 AGCTCTACCCCGTTTGATTTGA 59.695 45.455 0.00 0.00 0.00 2.69
3527 4962 2.678336 GCTCTACCCCGTTTGATTTGAG 59.322 50.000 0.00 0.00 0.00 3.02
3528 4963 2.678336 CTCTACCCCGTTTGATTTGAGC 59.322 50.000 0.00 0.00 0.00 4.26
3529 4964 2.039216 TCTACCCCGTTTGATTTGAGCA 59.961 45.455 0.00 0.00 0.00 4.26
3530 4965 0.958822 ACCCCGTTTGATTTGAGCAC 59.041 50.000 0.00 0.00 0.00 4.40
3572 5021 8.761575 TTTATTTAACTACGTACAACCTCCTG 57.238 34.615 0.00 0.00 0.00 3.86
3573 5022 4.789012 TTAACTACGTACAACCTCCTGG 57.211 45.455 0.00 0.00 39.83 4.45
3574 5023 2.592102 ACTACGTACAACCTCCTGGA 57.408 50.000 0.00 0.00 37.04 3.86
3575 5024 2.444421 ACTACGTACAACCTCCTGGAG 58.556 52.381 17.02 17.02 37.04 3.86
3576 5025 2.224967 ACTACGTACAACCTCCTGGAGT 60.225 50.000 21.70 7.22 37.04 3.85
3649 5104 3.309600 TGGAGGCTAGGTCCTACTTAC 57.690 52.381 0.00 0.00 37.96 2.34
3661 5116 6.932947 AGGTCCTACTTACTGTATTTGACAC 58.067 40.000 0.00 0.00 33.31 3.67
3667 5122 9.436957 CCTACTTACTGTATTTGACACAGATTT 57.563 33.333 9.33 0.00 45.10 2.17
3669 5124 8.902540 ACTTACTGTATTTGACACAGATTTCA 57.097 30.769 9.33 0.00 45.10 2.69
3670 5125 8.993121 ACTTACTGTATTTGACACAGATTTCAG 58.007 33.333 9.33 0.00 45.10 3.02
3671 5126 8.902540 TTACTGTATTTGACACAGATTTCAGT 57.097 30.769 9.33 0.00 45.10 3.41
3672 5127 9.990360 TTACTGTATTTGACACAGATTTCAGTA 57.010 29.630 9.33 0.00 45.10 2.74
3673 5128 8.311650 ACTGTATTTGACACAGATTTCAGTAC 57.688 34.615 9.33 0.00 45.10 2.73
3701 5156 1.597797 ATTCAGGCCGGCACACAATG 61.598 55.000 30.85 15.84 0.00 2.82
3702 5157 3.751246 CAGGCCGGCACACAATGG 61.751 66.667 30.85 3.55 0.00 3.16
3709 5164 2.202650 GCACACAATGGCATCCGC 60.203 61.111 0.00 0.00 37.44 5.54
3710 5165 2.992273 GCACACAATGGCATCCGCA 61.992 57.895 0.00 0.00 41.24 5.69
3711 5166 1.811195 CACACAATGGCATCCGCAT 59.189 52.632 0.00 0.00 41.24 4.73
3712 5167 0.248743 CACACAATGGCATCCGCATC 60.249 55.000 0.00 0.00 41.24 3.91
3713 5168 0.680601 ACACAATGGCATCCGCATCA 60.681 50.000 0.00 0.00 41.24 3.07
3714 5169 0.671796 CACAATGGCATCCGCATCAT 59.328 50.000 0.00 0.00 41.24 2.45
3715 5170 1.881324 CACAATGGCATCCGCATCATA 59.119 47.619 0.00 0.00 41.24 2.15
3716 5171 1.881973 ACAATGGCATCCGCATCATAC 59.118 47.619 0.00 0.00 41.24 2.39
3717 5172 1.135888 CAATGGCATCCGCATCATACG 60.136 52.381 0.00 0.00 41.24 3.06
3813 5268 3.007182 ACAATGGGCATTCAGAAAGGTTG 59.993 43.478 0.00 0.00 0.00 3.77
3827 5282 2.262423 AGGTTGCAGACTTCCAGTTC 57.738 50.000 0.00 0.00 0.00 3.01
3831 5286 0.250467 TGCAGACTTCCAGTTCAGCC 60.250 55.000 0.00 0.00 0.00 4.85
3911 8399 8.475639 TGGAGAGTACAATATTCTTCCAGTAAC 58.524 37.037 0.00 0.00 0.00 2.50
3970 8458 5.086621 AGCAAAACTCAAATTGGGATAGGT 58.913 37.500 0.00 0.00 0.00 3.08
4010 8498 4.946478 ACAGTTCAGTAACTTCAGAGCT 57.054 40.909 0.00 0.00 43.60 4.09
4012 8500 6.406692 ACAGTTCAGTAACTTCAGAGCTAA 57.593 37.500 0.00 0.00 43.60 3.09
4024 8512 3.921104 TCAGAGCTAATGGAGGACTGAT 58.079 45.455 0.00 0.00 0.00 2.90
4033 8521 3.354948 TGGAGGACTGATCAACCATTG 57.645 47.619 17.28 0.00 30.18 2.82
4047 8535 4.454161 TCAACCATTGACATAACAGTTCCG 59.546 41.667 0.00 0.00 34.08 4.30
4048 8536 2.747446 ACCATTGACATAACAGTTCCGC 59.253 45.455 0.00 0.00 0.00 5.54
4204 8692 9.979578 AACTTTGAAGCAAACATAATAACATCA 57.020 25.926 0.00 0.00 0.00 3.07
4266 8754 9.489084 TGCACAATATTAATGATACTAGGTCAC 57.511 33.333 0.00 0.00 0.00 3.67
4267 8755 9.489084 GCACAATATTAATGATACTAGGTCACA 57.511 33.333 0.00 0.00 0.00 3.58
4275 8763 9.952030 TTAATGATACTAGGTCACAAACATGAA 57.048 29.630 0.00 0.00 0.00 2.57
4277 8765 7.848223 TGATACTAGGTCACAAACATGAATG 57.152 36.000 0.00 0.00 0.00 2.67
4278 8766 7.619965 TGATACTAGGTCACAAACATGAATGA 58.380 34.615 0.00 0.00 0.00 2.57
4279 8767 7.549134 TGATACTAGGTCACAAACATGAATGAC 59.451 37.037 0.00 7.24 40.62 3.06
4280 8768 5.620206 ACTAGGTCACAAACATGAATGACA 58.380 37.500 18.21 5.26 42.66 3.58
4292 8780 8.400186 CAAACATGAATGACAACAGCTATATGA 58.600 33.333 0.00 0.00 0.00 2.15
4293 8781 7.725818 ACATGAATGACAACAGCTATATGAG 57.274 36.000 0.00 0.00 0.00 2.90
4294 8782 6.709397 ACATGAATGACAACAGCTATATGAGG 59.291 38.462 0.00 0.00 0.00 3.86
4295 8783 5.059161 TGAATGACAACAGCTATATGAGGC 58.941 41.667 0.00 0.00 0.00 4.70
4296 8784 4.970860 ATGACAACAGCTATATGAGGCT 57.029 40.909 0.00 0.00 39.60 4.58
4306 8794 6.678568 AGCTATATGAGGCTGTAACTTGAT 57.321 37.500 0.00 0.00 37.41 2.57
4307 8795 7.072263 AGCTATATGAGGCTGTAACTTGATT 57.928 36.000 0.00 0.00 37.41 2.57
4308 8796 8.195165 AGCTATATGAGGCTGTAACTTGATTA 57.805 34.615 0.00 0.00 37.41 1.75
4329 8817 1.201921 CGGAGTAATGAAACAGCGCAC 60.202 52.381 11.47 0.00 0.00 5.34
4371 8859 2.313317 ACTTGTCTGGTGGAGAACGTA 58.687 47.619 0.00 0.00 30.26 3.57
4422 8910 6.033341 CAGACCGTTGTTTCAGAAAATTCAA 58.967 36.000 0.00 0.00 0.00 2.69
4434 8922 4.913924 CAGAAAATTCAAGTGGAAGCGAAG 59.086 41.667 0.00 0.00 39.30 3.79
4443 8931 0.035439 TGGAAGCGAAGGATTGGGTC 60.035 55.000 0.00 0.00 31.94 4.46
4452 8941 1.745489 GGATTGGGTCACGCAGGAC 60.745 63.158 0.00 0.00 37.06 3.85
4453 8942 1.003839 GATTGGGTCACGCAGGACA 60.004 57.895 7.02 0.00 39.59 4.02
4464 8953 2.182842 GCAGGACATAAGCGGGCAG 61.183 63.158 0.00 0.00 0.00 4.85
4499 8988 2.438411 CGACCTCTAGAACCAGACTGT 58.562 52.381 0.93 0.00 0.00 3.55
4501 8990 4.008330 CGACCTCTAGAACCAGACTGTTA 58.992 47.826 0.93 0.00 0.00 2.41
4517 9008 7.063544 CCAGACTGTTATTTGTAGCTTACTCAC 59.936 40.741 0.93 0.00 0.00 3.51
4518 9009 7.815068 CAGACTGTTATTTGTAGCTTACTCACT 59.185 37.037 0.00 0.00 0.00 3.41
4519 9010 8.030106 AGACTGTTATTTGTAGCTTACTCACTC 58.970 37.037 0.00 0.00 0.00 3.51
4520 9011 7.897864 ACTGTTATTTGTAGCTTACTCACTCT 58.102 34.615 0.00 0.00 0.00 3.24
4521 9012 9.021807 ACTGTTATTTGTAGCTTACTCACTCTA 57.978 33.333 0.00 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.702902 CTAGCCCCCTCCGGTATCTA 59.297 60.000 0.00 0.00 0.00 1.98
1 2 1.465623 CTAGCCCCCTCCGGTATCT 59.534 63.158 0.00 0.00 0.00 1.98
2 3 1.609794 CCTAGCCCCCTCCGGTATC 60.610 68.421 0.00 0.00 0.00 2.24
6 7 3.399911 TAACCCTAGCCCCCTCCGG 62.400 68.421 0.00 0.00 0.00 5.14
7 8 2.138831 GTAACCCTAGCCCCCTCCG 61.139 68.421 0.00 0.00 0.00 4.63
8 9 1.003835 TGTAACCCTAGCCCCCTCC 59.996 63.158 0.00 0.00 0.00 4.30
9 10 0.619543 TGTGTAACCCTAGCCCCCTC 60.620 60.000 0.00 0.00 34.36 4.30
10 11 0.620700 CTGTGTAACCCTAGCCCCCT 60.621 60.000 0.00 0.00 34.36 4.79
11 12 0.619543 TCTGTGTAACCCTAGCCCCC 60.620 60.000 0.00 0.00 34.36 5.40
12 13 0.831307 CTCTGTGTAACCCTAGCCCC 59.169 60.000 0.00 0.00 34.36 5.80
13 14 1.569653 ACTCTGTGTAACCCTAGCCC 58.430 55.000 0.00 0.00 34.36 5.19
14 15 2.354805 CCAACTCTGTGTAACCCTAGCC 60.355 54.545 0.00 0.00 34.36 3.93
15 16 2.302157 ACCAACTCTGTGTAACCCTAGC 59.698 50.000 0.00 0.00 34.36 3.42
18 19 3.712733 TGTAACCAACTCTGTGTAACCCT 59.287 43.478 0.00 0.00 34.36 4.34
19 20 4.075963 TGTAACCAACTCTGTGTAACCC 57.924 45.455 0.00 0.00 34.36 4.11
21 22 4.514066 CCCTTGTAACCAACTCTGTGTAAC 59.486 45.833 0.00 0.00 37.35 2.50
23 24 3.968649 TCCCTTGTAACCAACTCTGTGTA 59.031 43.478 0.00 0.00 0.00 2.90
24 25 2.775384 TCCCTTGTAACCAACTCTGTGT 59.225 45.455 0.00 0.00 0.00 3.72
25 26 3.403038 CTCCCTTGTAACCAACTCTGTG 58.597 50.000 0.00 0.00 0.00 3.66
27 28 2.637872 TCCTCCCTTGTAACCAACTCTG 59.362 50.000 0.00 0.00 0.00 3.35
28 29 2.907042 CTCCTCCCTTGTAACCAACTCT 59.093 50.000 0.00 0.00 0.00 3.24
29 30 2.904434 TCTCCTCCCTTGTAACCAACTC 59.096 50.000 0.00 0.00 0.00 3.01
30 31 2.986050 TCTCCTCCCTTGTAACCAACT 58.014 47.619 0.00 0.00 0.00 3.16
31 32 3.519913 AGATCTCCTCCCTTGTAACCAAC 59.480 47.826 0.00 0.00 0.00 3.77
32 33 3.803340 AGATCTCCTCCCTTGTAACCAA 58.197 45.455 0.00 0.00 0.00 3.67
33 34 3.491766 AGATCTCCTCCCTTGTAACCA 57.508 47.619 0.00 0.00 0.00 3.67
34 35 3.775316 TGAAGATCTCCTCCCTTGTAACC 59.225 47.826 0.00 0.00 0.00 2.85
35 36 5.622346 ATGAAGATCTCCTCCCTTGTAAC 57.378 43.478 0.00 0.00 0.00 2.50
36 37 6.498651 GGATATGAAGATCTCCTCCCTTGTAA 59.501 42.308 0.00 0.00 0.00 2.41
38 39 4.843516 GGATATGAAGATCTCCTCCCTTGT 59.156 45.833 0.00 0.00 0.00 3.16
39 40 4.081752 CGGATATGAAGATCTCCTCCCTTG 60.082 50.000 0.00 0.00 0.00 3.61
40 41 4.093011 CGGATATGAAGATCTCCTCCCTT 58.907 47.826 0.00 0.00 0.00 3.95
41 42 3.076785 ACGGATATGAAGATCTCCTCCCT 59.923 47.826 0.00 0.00 0.00 4.20
42 43 3.436243 ACGGATATGAAGATCTCCTCCC 58.564 50.000 0.00 0.00 0.00 4.30
43 44 6.568869 CAATACGGATATGAAGATCTCCTCC 58.431 44.000 0.00 0.00 0.00 4.30
44 45 6.039616 GCAATACGGATATGAAGATCTCCTC 58.960 44.000 0.00 0.00 0.00 3.71
46 47 5.105146 AGGCAATACGGATATGAAGATCTCC 60.105 44.000 0.00 0.00 0.00 3.71
47 48 5.971763 AGGCAATACGGATATGAAGATCTC 58.028 41.667 0.00 0.00 0.00 2.75
50 51 5.423610 AGCTAGGCAATACGGATATGAAGAT 59.576 40.000 0.00 0.00 0.00 2.40
51 52 4.772624 AGCTAGGCAATACGGATATGAAGA 59.227 41.667 0.00 0.00 0.00 2.87
52 53 5.078411 AGCTAGGCAATACGGATATGAAG 57.922 43.478 0.00 0.00 0.00 3.02
53 54 5.237815 CAAGCTAGGCAATACGGATATGAA 58.762 41.667 0.00 0.00 0.00 2.57
54 55 4.820897 CAAGCTAGGCAATACGGATATGA 58.179 43.478 0.00 0.00 0.00 2.15
56 57 3.600388 GCAAGCTAGGCAATACGGATAT 58.400 45.455 5.48 0.00 0.00 1.63
57 58 2.289444 GGCAAGCTAGGCAATACGGATA 60.289 50.000 11.85 0.00 0.00 2.59
59 60 0.179056 GGCAAGCTAGGCAATACGGA 60.179 55.000 11.85 0.00 0.00 4.69
60 61 0.179045 AGGCAAGCTAGGCAATACGG 60.179 55.000 11.85 0.00 36.37 4.02
61 62 1.599542 GAAGGCAAGCTAGGCAATACG 59.400 52.381 11.85 0.00 36.37 3.06
62 63 1.950216 GGAAGGCAAGCTAGGCAATAC 59.050 52.381 11.85 0.00 36.37 1.89
65 66 0.609131 GTGGAAGGCAAGCTAGGCAA 60.609 55.000 11.85 0.00 36.37 4.52
66 67 1.002134 GTGGAAGGCAAGCTAGGCA 60.002 57.895 11.85 0.00 36.37 4.75
67 68 2.109126 CGTGGAAGGCAAGCTAGGC 61.109 63.158 1.78 1.78 0.00 3.93
68 69 4.208632 CGTGGAAGGCAAGCTAGG 57.791 61.111 0.00 0.00 0.00 3.02
77 78 1.078848 CTCTCCTTGGCGTGGAAGG 60.079 63.158 0.00 0.00 41.36 3.46
78 79 0.390472 GACTCTCCTTGGCGTGGAAG 60.390 60.000 0.17 3.93 32.61 3.46
79 80 1.671742 GACTCTCCTTGGCGTGGAA 59.328 57.895 0.17 0.00 32.61 3.53
80 81 2.283529 GGACTCTCCTTGGCGTGGA 61.284 63.158 0.00 0.00 32.53 4.02
81 82 2.266055 GGACTCTCCTTGGCGTGG 59.734 66.667 0.00 0.00 32.53 4.94
82 83 1.903877 ATGGGACTCTCCTTGGCGTG 61.904 60.000 0.00 0.00 36.57 5.34
83 84 1.613630 ATGGGACTCTCCTTGGCGT 60.614 57.895 0.00 0.00 36.57 5.68
84 85 1.144936 GATGGGACTCTCCTTGGCG 59.855 63.158 0.00 0.00 36.57 5.69
85 86 1.274703 TGGATGGGACTCTCCTTGGC 61.275 60.000 0.00 0.00 36.57 4.52
86 87 0.835941 CTGGATGGGACTCTCCTTGG 59.164 60.000 0.00 0.00 36.57 3.61
87 88 1.484240 GTCTGGATGGGACTCTCCTTG 59.516 57.143 0.00 0.00 36.57 3.61
89 90 0.712979 TGTCTGGATGGGACTCTCCT 59.287 55.000 0.00 0.00 36.57 3.69
91 92 0.457851 CGTGTCTGGATGGGACTCTC 59.542 60.000 0.00 0.00 35.04 3.20
93 94 1.517832 CCGTGTCTGGATGGGACTC 59.482 63.158 0.00 0.00 35.04 3.36
94 95 1.990060 CCCGTGTCTGGATGGGACT 60.990 63.158 0.00 0.00 44.88 3.85
95 96 1.987855 TCCCGTGTCTGGATGGGAC 60.988 63.158 0.00 0.00 45.66 4.46
97 98 2.584608 GTCCCGTGTCTGGATGGG 59.415 66.667 0.00 0.00 43.36 4.00
98 99 1.884075 TTCGTCCCGTGTCTGGATGG 61.884 60.000 0.00 0.00 39.05 3.51
99 100 0.458543 CTTCGTCCCGTGTCTGGATG 60.459 60.000 0.00 0.00 39.77 3.51
101 102 1.521450 GACTTCGTCCCGTGTCTGGA 61.521 60.000 0.00 0.00 32.61 3.86
103 104 0.314302 AAGACTTCGTCCCGTGTCTG 59.686 55.000 12.63 0.00 39.66 3.51
104 105 0.597072 GAAGACTTCGTCCCGTGTCT 59.403 55.000 0.00 8.38 40.63 3.41
105 106 0.313043 TGAAGACTTCGTCCCGTGTC 59.687 55.000 10.56 0.00 32.18 3.67
106 107 0.748450 TTGAAGACTTCGTCCCGTGT 59.252 50.000 10.56 0.00 32.18 4.49
107 108 1.993370 GATTGAAGACTTCGTCCCGTG 59.007 52.381 10.56 0.00 32.18 4.94
108 109 1.893801 AGATTGAAGACTTCGTCCCGT 59.106 47.619 10.56 0.00 32.18 5.28
109 110 2.656560 AGATTGAAGACTTCGTCCCG 57.343 50.000 10.56 0.00 32.18 5.14
111 112 6.334202 AGATACAAGATTGAAGACTTCGTCC 58.666 40.000 10.56 2.18 32.18 4.79
113 114 7.378966 TGAAGATACAAGATTGAAGACTTCGT 58.621 34.615 10.56 1.87 34.37 3.85
114 115 7.818493 TGAAGATACAAGATTGAAGACTTCG 57.182 36.000 10.56 0.00 34.37 3.79
118 119 9.255304 GGACTATGAAGATACAAGATTGAAGAC 57.745 37.037 0.00 0.00 0.00 3.01
119 120 8.981659 TGGACTATGAAGATACAAGATTGAAGA 58.018 33.333 0.00 0.00 0.00 2.87
120 121 9.605275 TTGGACTATGAAGATACAAGATTGAAG 57.395 33.333 0.00 0.00 0.00 3.02
121 122 9.383519 GTTGGACTATGAAGATACAAGATTGAA 57.616 33.333 0.00 0.00 0.00 2.69
122 123 8.539544 TGTTGGACTATGAAGATACAAGATTGA 58.460 33.333 0.00 0.00 0.00 2.57
123 124 8.722480 TGTTGGACTATGAAGATACAAGATTG 57.278 34.615 0.00 0.00 0.00 2.67
124 125 8.543774 ACTGTTGGACTATGAAGATACAAGATT 58.456 33.333 0.00 0.00 0.00 2.40
125 126 8.083828 ACTGTTGGACTATGAAGATACAAGAT 57.916 34.615 0.00 0.00 0.00 2.40
127 128 6.758886 GGACTGTTGGACTATGAAGATACAAG 59.241 42.308 0.00 0.00 0.00 3.16
128 129 6.627287 CGGACTGTTGGACTATGAAGATACAA 60.627 42.308 0.00 0.00 0.00 2.41
129 130 5.163550 CGGACTGTTGGACTATGAAGATACA 60.164 44.000 0.00 0.00 0.00 2.29
130 131 5.282510 CGGACTGTTGGACTATGAAGATAC 58.717 45.833 0.00 0.00 0.00 2.24
131 132 4.341235 CCGGACTGTTGGACTATGAAGATA 59.659 45.833 0.00 0.00 0.00 1.98
132 133 3.133003 CCGGACTGTTGGACTATGAAGAT 59.867 47.826 0.00 0.00 0.00 2.40
133 134 2.496070 CCGGACTGTTGGACTATGAAGA 59.504 50.000 0.00 0.00 0.00 2.87
134 135 2.233922 ACCGGACTGTTGGACTATGAAG 59.766 50.000 9.46 0.00 0.00 3.02
135 136 2.232941 GACCGGACTGTTGGACTATGAA 59.767 50.000 9.46 0.00 0.00 2.57
136 137 1.822990 GACCGGACTGTTGGACTATGA 59.177 52.381 9.46 0.00 0.00 2.15
138 139 1.933021 TGACCGGACTGTTGGACTAT 58.067 50.000 9.46 0.00 0.00 2.12
139 140 1.707106 TTGACCGGACTGTTGGACTA 58.293 50.000 9.46 0.00 0.00 2.59
141 142 1.202604 TCTTTGACCGGACTGTTGGAC 60.203 52.381 9.46 2.09 0.00 4.02
142 143 1.124780 TCTTTGACCGGACTGTTGGA 58.875 50.000 9.46 0.00 0.00 3.53
143 144 1.961793 TTCTTTGACCGGACTGTTGG 58.038 50.000 9.46 0.00 0.00 3.77
144 145 6.106673 ACTATATTCTTTGACCGGACTGTTG 58.893 40.000 9.46 0.00 0.00 3.33
146 147 5.163437 GGACTATATTCTTTGACCGGACTGT 60.163 44.000 9.46 0.00 0.00 3.55
148 149 4.037684 CGGACTATATTCTTTGACCGGACT 59.962 45.833 9.46 0.00 35.02 3.85
149 150 4.296690 CGGACTATATTCTTTGACCGGAC 58.703 47.826 9.46 1.07 35.02 4.79
150 151 4.579454 CGGACTATATTCTTTGACCGGA 57.421 45.455 9.46 0.00 35.02 5.14
151 152 3.650139 CCGGACTATATTCTTTGACCGG 58.350 50.000 0.00 0.00 46.81 5.28
152 153 3.057734 GCCGGACTATATTCTTTGACCG 58.942 50.000 5.05 0.00 37.46 4.79
153 154 4.058817 CAGCCGGACTATATTCTTTGACC 58.941 47.826 5.05 0.00 0.00 4.02
155 156 4.202223 GGACAGCCGGACTATATTCTTTGA 60.202 45.833 5.05 0.00 0.00 2.69
156 157 4.058817 GGACAGCCGGACTATATTCTTTG 58.941 47.826 5.05 0.00 0.00 2.77
157 158 3.071167 GGGACAGCCGGACTATATTCTTT 59.929 47.826 5.05 0.00 33.83 2.52
159 160 2.249139 GGGACAGCCGGACTATATTCT 58.751 52.381 5.05 0.00 33.83 2.40
160 161 1.067776 CGGGACAGCCGGACTATATTC 60.068 57.143 5.05 0.00 36.66 1.75
163 164 0.536687 CTCGGGACAGCCGGACTATA 60.537 60.000 5.05 0.00 38.46 1.31
164 165 1.828660 CTCGGGACAGCCGGACTAT 60.829 63.158 5.05 0.00 38.46 2.12
166 167 4.361971 TCTCGGGACAGCCGGACT 62.362 66.667 5.05 0.00 38.46 3.85
172 173 3.674050 TAGGGGGTCTCGGGACAGC 62.674 68.421 18.98 0.00 43.77 4.40
173 174 0.398664 ATTAGGGGGTCTCGGGACAG 60.399 60.000 18.98 0.00 43.77 3.51
174 175 0.689745 CATTAGGGGGTCTCGGGACA 60.690 60.000 18.98 0.00 43.77 4.02
175 176 2.041206 GCATTAGGGGGTCTCGGGAC 62.041 65.000 6.97 6.97 41.43 4.46
178 179 1.447643 CTGCATTAGGGGGTCTCGG 59.552 63.158 0.00 0.00 0.00 4.63
179 180 1.447643 CCTGCATTAGGGGGTCTCG 59.552 63.158 0.00 0.00 43.33 4.04
185 186 7.946063 TACTAAGGGAGTCCTGCATTAGGGG 62.946 52.000 19.55 2.18 45.31 4.79
187 188 3.041946 ACTAAGGGAGTCCTGCATTAGG 58.958 50.000 19.55 6.65 45.31 2.69
188 189 5.305644 ACATACTAAGGGAGTCCTGCATTAG 59.694 44.000 15.62 15.62 46.06 1.73
189 190 5.216622 ACATACTAAGGGAGTCCTGCATTA 58.783 41.667 9.58 3.25 44.07 1.90
193 194 3.301274 AGACATACTAAGGGAGTCCTGC 58.699 50.000 9.58 0.00 44.07 4.85
194 195 5.941555 AAAGACATACTAAGGGAGTCCTG 57.058 43.478 9.58 0.00 44.07 3.86
226 227 9.533253 CATCCATTCGATAATGTAGTGCATATA 57.467 33.333 0.00 0.00 40.84 0.86
227 228 7.011763 GCATCCATTCGATAATGTAGTGCATAT 59.988 37.037 0.00 0.00 40.84 1.78
229 230 5.122869 GCATCCATTCGATAATGTAGTGCAT 59.877 40.000 0.00 0.00 40.84 3.96
272 1667 1.213926 GGGCTCCTCATGAAACCTCAT 59.786 52.381 0.00 0.00 43.40 2.90
273 1668 0.620556 GGGCTCCTCATGAAACCTCA 59.379 55.000 0.00 0.00 35.56 3.86
274 1669 0.915364 AGGGCTCCTCATGAAACCTC 59.085 55.000 0.00 0.00 0.00 3.85
275 1670 3.111265 AGGGCTCCTCATGAAACCT 57.889 52.632 0.00 0.00 0.00 3.50
327 1722 3.511540 GGCTAGGCTTGTGGAAAGAAAAT 59.488 43.478 9.46 0.00 0.00 1.82
332 1727 1.909700 TTGGCTAGGCTTGTGGAAAG 58.090 50.000 18.18 0.00 0.00 2.62
333 1728 2.238521 CTTTGGCTAGGCTTGTGGAAA 58.761 47.619 18.18 7.38 0.00 3.13
335 1730 0.771127 ACTTTGGCTAGGCTTGTGGA 59.229 50.000 18.18 0.00 0.00 4.02
336 1731 1.620822 AACTTTGGCTAGGCTTGTGG 58.379 50.000 18.18 5.92 0.00 4.17
337 1732 3.568007 TGTAAACTTTGGCTAGGCTTGTG 59.432 43.478 18.18 7.60 0.00 3.33
394 1791 1.885887 CTTCATGTCCCGCAAAAGGAA 59.114 47.619 0.00 0.00 34.43 3.36
409 1806 1.000274 GCTCGGGTGCAAAAACTTCAT 60.000 47.619 0.00 0.00 0.00 2.57
487 1894 9.723601 ACATTTGTCAAAGTTTGCCATATATTT 57.276 25.926 10.90 0.00 0.00 1.40
519 1926 9.801714 GATTTCATGATAAAACTTTGCAAACTG 57.198 29.630 8.05 1.99 0.00 3.16
522 1929 9.322773 TGTGATTTCATGATAAAACTTTGCAAA 57.677 25.926 12.14 12.14 0.00 3.68
571 1978 8.897752 AGGTAGCATTTTCAGAGTATTGATTTC 58.102 33.333 0.00 0.00 0.00 2.17
583 1990 4.083324 TGCTTTCGAAGGTAGCATTTTCAG 60.083 41.667 16.94 0.20 39.79 3.02
596 2003 3.004734 AGTGGTCCAAAATGCTTTCGAAG 59.995 43.478 0.00 0.00 0.00 3.79
614 2021 6.386654 AGTCGTGGCAAAATAAAATTAGTGG 58.613 36.000 0.00 0.00 0.00 4.00
663 2076 9.985318 CTTTGACAAATATTCTAAGAGCTTGAG 57.015 33.333 0.05 0.00 30.19 3.02
746 2159 3.964688 TCCGAGCTTATAGGGATGAACAA 59.035 43.478 0.00 0.00 0.00 2.83
760 2173 1.604378 CCCTTCCACATCCGAGCTT 59.396 57.895 0.00 0.00 0.00 3.74
786 2199 6.249035 TCTCTTAATAACCACGCAAAAAGG 57.751 37.500 0.00 0.00 0.00 3.11
788 2201 5.615984 CGCTCTCTTAATAACCACGCAAAAA 60.616 40.000 0.00 0.00 0.00 1.94
816 2229 0.460311 AGTCGCTCAGTTTATCGGGG 59.540 55.000 0.00 0.00 0.00 5.73
820 2233 4.712763 CACCAAAAGTCGCTCAGTTTATC 58.287 43.478 0.00 0.00 0.00 1.75
838 2251 2.112297 GGGAAACGTGGAGCACCA 59.888 61.111 0.00 0.00 44.76 4.17
857 2270 0.668535 GTGGAGTGGAAGTGGTTTGC 59.331 55.000 0.00 0.00 0.00 3.68
862 2275 0.401738 ATGGTGTGGAGTGGAAGTGG 59.598 55.000 0.00 0.00 0.00 4.00
919 2332 2.107950 TTTCTTCCATGGCGTTCGAT 57.892 45.000 6.96 0.00 0.00 3.59
925 2338 1.136891 GGGGAATTTTCTTCCATGGCG 59.863 52.381 6.96 0.01 40.32 5.69
1022 2435 3.583806 CAGTAGAGGCTTCTGTTGACAG 58.416 50.000 8.91 4.77 45.08 3.51
1251 2686 0.749649 AACCAGAGGCTAGCTCGATG 59.250 55.000 15.72 8.54 0.00 3.84
1380 2815 4.473520 CCTGGGCGTGGCGAAGAT 62.474 66.667 0.00 0.00 0.00 2.40
1395 2830 3.415087 GATCTGCACCCAGCCCCT 61.415 66.667 0.00 0.00 44.83 4.79
1396 2831 3.286694 TTGATCTGCACCCAGCCCC 62.287 63.158 0.00 0.00 44.83 5.80
1400 2835 1.300971 CCGTGTTGATCTGCACCCAG 61.301 60.000 12.35 0.00 40.54 4.45
1445 2880 0.460109 TGACGCCGATGGTGAAGATG 60.460 55.000 2.95 0.00 36.58 2.90
1577 3012 2.053865 CCATTGCTTGGGGATGCGT 61.054 57.895 0.00 0.00 42.33 5.24
1769 3204 0.617820 TTGCCTGGAGGAGGTAGGAC 60.618 60.000 0.00 0.00 44.97 3.85
1826 3261 0.453793 AGATGGTGAACGAGAGCGAG 59.546 55.000 0.00 0.00 41.64 5.03
1835 3270 0.026803 GCGCGATGAAGATGGTGAAC 59.973 55.000 12.10 0.00 0.00 3.18
2324 3759 1.004044 AGCACCTTGGAGTCCATGAAG 59.996 52.381 23.33 13.51 31.53 3.02
2375 3810 3.041940 CCGACCACCAGCACGTTC 61.042 66.667 0.00 0.00 0.00 3.95
2411 3846 2.675889 CGGGTGGTACATGTACTTGACC 60.676 54.545 29.89 28.33 44.52 4.02
2513 3948 4.664677 ACGTCCACCTGCGAGTGC 62.665 66.667 0.50 0.00 43.20 4.40
2582 4017 1.375098 GGAGGAGGTACACCGAGACG 61.375 65.000 0.00 0.00 46.15 4.18
2753 4188 4.771356 TACGGCAGCAGCGACGAC 62.771 66.667 17.58 0.00 43.41 4.34
3021 4456 2.511600 GAACAGGCCGTCGATGGG 60.512 66.667 24.85 13.14 0.00 4.00
3044 4479 2.508439 AAGTACATGGCGACGCGG 60.508 61.111 14.61 8.46 0.00 6.46
3104 4539 2.279517 GCGTCCTCGGCCATGTAG 60.280 66.667 2.24 0.00 37.56 2.74
3146 4581 0.835941 ACTCTATGGGCAGCAGGAAG 59.164 55.000 0.00 0.00 0.00 3.46
3158 4593 1.142531 TCGCTGCTGCCACTCTATG 59.857 57.895 10.24 0.00 35.36 2.23
3176 4611 3.273654 TCCTCCTCGGGGTCCAGT 61.274 66.667 0.00 0.00 0.00 4.00
3212 4647 2.081212 GTCGACGAACTCCTGCGTG 61.081 63.158 0.00 0.00 41.34 5.34
3233 4668 2.357034 CGGTTGTCGTCCACCCAG 60.357 66.667 0.00 0.00 0.00 4.45
3452 4887 4.379243 AGCGTGGACAAGCGGGAG 62.379 66.667 4.67 0.00 40.72 4.30
3522 4957 0.759959 TTACGACTGGGGTGCTCAAA 59.240 50.000 0.00 0.00 0.00 2.69
3523 4958 0.981183 ATTACGACTGGGGTGCTCAA 59.019 50.000 0.00 0.00 0.00 3.02
3524 4959 0.535335 GATTACGACTGGGGTGCTCA 59.465 55.000 0.00 0.00 0.00 4.26
3525 4960 0.535335 TGATTACGACTGGGGTGCTC 59.465 55.000 0.00 0.00 0.00 4.26
3526 4961 1.204146 ATGATTACGACTGGGGTGCT 58.796 50.000 0.00 0.00 0.00 4.40
3527 4962 2.902705 TATGATTACGACTGGGGTGC 57.097 50.000 0.00 0.00 0.00 5.01
3528 4963 7.979444 AATAAATATGATTACGACTGGGGTG 57.021 36.000 0.00 0.00 0.00 4.61
3560 5009 3.163467 ACTACACTCCAGGAGGTTGTAC 58.837 50.000 21.31 0.00 35.06 2.90
3561 5010 3.537795 ACTACACTCCAGGAGGTTGTA 57.462 47.619 21.31 18.10 35.06 2.41
3562 5011 2.368875 CAACTACACTCCAGGAGGTTGT 59.631 50.000 21.31 17.95 36.57 3.32
3564 5013 2.368875 CACAACTACACTCCAGGAGGTT 59.631 50.000 21.31 11.71 33.35 3.50
3565 5014 1.971357 CACAACTACACTCCAGGAGGT 59.029 52.381 21.31 16.77 33.35 3.85
3566 5015 1.971357 ACACAACTACACTCCAGGAGG 59.029 52.381 21.31 11.87 33.35 4.30
3567 5016 3.753294 AACACAACTACACTCCAGGAG 57.247 47.619 15.72 15.72 35.52 3.69
3568 5017 3.199071 ACAAACACAACTACACTCCAGGA 59.801 43.478 0.00 0.00 0.00 3.86
3569 5018 3.541632 ACAAACACAACTACACTCCAGG 58.458 45.455 0.00 0.00 0.00 4.45
3570 5019 6.671614 TTTACAAACACAACTACACTCCAG 57.328 37.500 0.00 0.00 0.00 3.86
3571 5020 7.633193 AATTTACAAACACAACTACACTCCA 57.367 32.000 0.00 0.00 0.00 3.86
3572 5021 7.971722 ACAAATTTACAAACACAACTACACTCC 59.028 33.333 0.00 0.00 0.00 3.85
3573 5022 8.905103 ACAAATTTACAAACACAACTACACTC 57.095 30.769 0.00 0.00 0.00 3.51
3607 5056 8.141298 TCCAAGATGTTACTACATGAGGTTAA 57.859 34.615 0.00 0.00 44.90 2.01
3608 5057 7.147724 CCTCCAAGATGTTACTACATGAGGTTA 60.148 40.741 0.00 0.00 44.90 2.85
3609 5058 6.352222 CCTCCAAGATGTTACTACATGAGGTT 60.352 42.308 0.00 0.00 44.90 3.50
3610 5059 5.129485 CCTCCAAGATGTTACTACATGAGGT 59.871 44.000 0.00 0.00 44.90 3.85
3611 5060 5.605534 CCTCCAAGATGTTACTACATGAGG 58.394 45.833 0.00 7.54 44.90 3.86
3612 5061 5.053145 GCCTCCAAGATGTTACTACATGAG 58.947 45.833 0.00 0.00 44.90 2.90
3613 5062 4.716784 AGCCTCCAAGATGTTACTACATGA 59.283 41.667 0.00 0.00 44.90 3.07
3614 5063 5.028549 AGCCTCCAAGATGTTACTACATG 57.971 43.478 0.00 0.00 44.90 3.21
3616 5065 4.649674 CCTAGCCTCCAAGATGTTACTACA 59.350 45.833 0.00 0.00 38.95 2.74
3617 5066 4.650131 ACCTAGCCTCCAAGATGTTACTAC 59.350 45.833 0.00 0.00 0.00 2.73
3618 5067 4.880164 ACCTAGCCTCCAAGATGTTACTA 58.120 43.478 0.00 0.00 0.00 1.82
3619 5068 3.707102 GACCTAGCCTCCAAGATGTTACT 59.293 47.826 0.00 0.00 0.00 2.24
3649 5104 8.539770 AGTACTGAAATCTGTGTCAAATACAG 57.460 34.615 0.00 0.00 45.30 2.74
3667 5122 6.462487 CCGGCCTGAATTTCTATTAGTACTGA 60.462 42.308 5.39 0.00 0.00 3.41
3668 5123 5.696724 CCGGCCTGAATTTCTATTAGTACTG 59.303 44.000 5.39 0.00 0.00 2.74
3669 5124 5.742255 GCCGGCCTGAATTTCTATTAGTACT 60.742 44.000 18.11 0.00 0.00 2.73
3670 5125 4.451435 GCCGGCCTGAATTTCTATTAGTAC 59.549 45.833 18.11 0.00 0.00 2.73
3671 5126 4.101898 TGCCGGCCTGAATTTCTATTAGTA 59.898 41.667 26.77 0.00 0.00 1.82
3672 5127 3.118038 TGCCGGCCTGAATTTCTATTAGT 60.118 43.478 26.77 0.00 0.00 2.24
3673 5128 3.251004 GTGCCGGCCTGAATTTCTATTAG 59.749 47.826 26.77 0.00 0.00 1.73
3701 5156 0.512952 GAACGTATGATGCGGATGCC 59.487 55.000 7.97 0.00 41.78 4.40
3702 5157 0.512952 GGAACGTATGATGCGGATGC 59.487 55.000 7.97 0.00 43.20 3.91
3703 5158 1.794701 CTGGAACGTATGATGCGGATG 59.205 52.381 7.97 0.00 0.00 3.51
3704 5159 1.686587 TCTGGAACGTATGATGCGGAT 59.313 47.619 7.97 0.00 0.00 4.18
3705 5160 1.107945 TCTGGAACGTATGATGCGGA 58.892 50.000 7.97 0.00 0.00 5.54
3706 5161 2.154854 ATCTGGAACGTATGATGCGG 57.845 50.000 7.97 0.00 0.00 5.69
3707 5162 2.476619 GGAATCTGGAACGTATGATGCG 59.523 50.000 0.33 0.33 0.00 4.73
3708 5163 2.808543 GGGAATCTGGAACGTATGATGC 59.191 50.000 0.00 0.00 0.00 3.91
3709 5164 3.059884 CGGGAATCTGGAACGTATGATG 58.940 50.000 0.00 0.00 0.00 3.07
3710 5165 2.963101 TCGGGAATCTGGAACGTATGAT 59.037 45.455 0.00 0.00 0.00 2.45
3711 5166 2.380941 TCGGGAATCTGGAACGTATGA 58.619 47.619 0.00 0.00 0.00 2.15
3712 5167 2.882927 TCGGGAATCTGGAACGTATG 57.117 50.000 0.00 0.00 0.00 2.39
3713 5168 3.899052 TTTCGGGAATCTGGAACGTAT 57.101 42.857 0.00 0.00 0.00 3.06
3714 5169 3.899052 ATTTCGGGAATCTGGAACGTA 57.101 42.857 0.00 0.00 0.00 3.57
3715 5170 2.781681 ATTTCGGGAATCTGGAACGT 57.218 45.000 0.00 0.00 0.00 3.99
3716 5171 5.294356 TGTATATTTCGGGAATCTGGAACG 58.706 41.667 0.00 0.00 0.00 3.95
3717 5172 7.745620 ATTGTATATTTCGGGAATCTGGAAC 57.254 36.000 0.00 0.00 0.00 3.62
3799 5254 4.320788 GGAAGTCTGCAACCTTTCTGAATG 60.321 45.833 0.00 0.00 0.00 2.67
3827 5282 3.076621 TCAGAACTAATGCTTGTGGCTG 58.923 45.455 0.00 0.00 42.39 4.85
3831 5286 5.220359 CGAGACATCAGAACTAATGCTTGTG 60.220 44.000 0.00 0.00 0.00 3.33
3911 8399 8.347771 TGATTGTTCTGAAGATTCTGAAAACTG 58.652 33.333 14.15 0.00 43.56 3.16
3966 8454 3.965379 TGCCGTCTTTGATGTTACCTA 57.035 42.857 0.00 0.00 0.00 3.08
3970 8458 5.242434 ACTGTATTGCCGTCTTTGATGTTA 58.758 37.500 0.00 0.00 0.00 2.41
4010 8498 5.191522 TCAATGGTTGATCAGTCCTCCATTA 59.808 40.000 20.04 12.16 40.98 1.90
4012 8500 3.524789 TCAATGGTTGATCAGTCCTCCAT 59.475 43.478 16.36 13.28 37.96 3.41
4024 8512 4.454161 CGGAACTGTTATGTCAATGGTTGA 59.546 41.667 0.00 0.00 37.33 3.18
4033 8521 3.799137 TTTTCGCGGAACTGTTATGTC 57.201 42.857 6.13 0.00 0.00 3.06
4126 8614 1.202651 CCTAGCAACTCCGGTATTGGG 60.203 57.143 18.09 9.85 0.00 4.12
4175 8663 7.708322 TGTTATTATGTTTGCTTCAAAGTTGCA 59.292 29.630 0.00 0.00 33.82 4.08
4204 8692 2.357009 GTCATGGTACCATCGTACTCGT 59.643 50.000 24.99 0.00 43.78 4.18
4257 8745 5.620206 TGTCATTCATGTTTGTGACCTAGT 58.380 37.500 14.85 0.00 40.07 2.57
4258 8746 6.017192 TGTTGTCATTCATGTTTGTGACCTAG 60.017 38.462 14.85 0.00 40.07 3.02
4259 8747 5.825151 TGTTGTCATTCATGTTTGTGACCTA 59.175 36.000 14.85 5.75 40.07 3.08
4260 8748 4.644234 TGTTGTCATTCATGTTTGTGACCT 59.356 37.500 14.85 0.00 40.07 3.85
4261 8749 4.930963 TGTTGTCATTCATGTTTGTGACC 58.069 39.130 14.85 6.21 40.07 4.02
4262 8750 4.442073 GCTGTTGTCATTCATGTTTGTGAC 59.558 41.667 12.32 12.32 40.93 3.67
4263 8751 4.338964 AGCTGTTGTCATTCATGTTTGTGA 59.661 37.500 0.00 0.00 0.00 3.58
4264 8752 4.613944 AGCTGTTGTCATTCATGTTTGTG 58.386 39.130 0.00 0.00 0.00 3.33
4265 8753 4.924305 AGCTGTTGTCATTCATGTTTGT 57.076 36.364 0.00 0.00 0.00 2.83
4266 8754 8.400186 TCATATAGCTGTTGTCATTCATGTTTG 58.600 33.333 0.00 0.00 0.00 2.93
4267 8755 8.510243 TCATATAGCTGTTGTCATTCATGTTT 57.490 30.769 0.00 0.00 0.00 2.83
4268 8756 7.228108 CCTCATATAGCTGTTGTCATTCATGTT 59.772 37.037 0.00 0.00 0.00 2.71
4269 8757 6.709397 CCTCATATAGCTGTTGTCATTCATGT 59.291 38.462 0.00 0.00 0.00 3.21
4270 8758 6.348295 GCCTCATATAGCTGTTGTCATTCATG 60.348 42.308 0.00 0.00 0.00 3.07
4271 8759 5.704515 GCCTCATATAGCTGTTGTCATTCAT 59.295 40.000 0.00 0.00 0.00 2.57
4272 8760 5.059161 GCCTCATATAGCTGTTGTCATTCA 58.941 41.667 0.00 0.00 0.00 2.57
4273 8761 5.303971 AGCCTCATATAGCTGTTGTCATTC 58.696 41.667 0.00 0.00 38.11 2.67
4274 8762 5.301835 AGCCTCATATAGCTGTTGTCATT 57.698 39.130 0.00 0.00 38.11 2.57
4275 8763 4.970860 AGCCTCATATAGCTGTTGTCAT 57.029 40.909 0.00 0.00 38.11 3.06
4292 8780 3.514309 ACTCCGTAATCAAGTTACAGCCT 59.486 43.478 0.00 0.00 42.29 4.58
4293 8781 3.858247 ACTCCGTAATCAAGTTACAGCC 58.142 45.455 0.00 0.00 42.29 4.85
4294 8782 6.755141 TCATTACTCCGTAATCAAGTTACAGC 59.245 38.462 0.00 0.00 42.29 4.40
4295 8783 8.697846 TTCATTACTCCGTAATCAAGTTACAG 57.302 34.615 0.00 0.00 42.29 2.74
4296 8784 8.928733 GTTTCATTACTCCGTAATCAAGTTACA 58.071 33.333 0.00 0.00 42.29 2.41
4297 8785 8.928733 TGTTTCATTACTCCGTAATCAAGTTAC 58.071 33.333 0.00 0.00 36.70 2.50
4298 8786 9.146984 CTGTTTCATTACTCCGTAATCAAGTTA 57.853 33.333 0.00 0.00 36.70 2.24
4299 8787 7.360946 GCTGTTTCATTACTCCGTAATCAAGTT 60.361 37.037 0.00 0.00 36.70 2.66
4300 8788 6.092259 GCTGTTTCATTACTCCGTAATCAAGT 59.908 38.462 0.00 0.00 36.70 3.16
4301 8789 6.478588 GCTGTTTCATTACTCCGTAATCAAG 58.521 40.000 0.00 0.00 36.70 3.02
4302 8790 5.062934 CGCTGTTTCATTACTCCGTAATCAA 59.937 40.000 0.00 0.00 36.70 2.57
4303 8791 4.565166 CGCTGTTTCATTACTCCGTAATCA 59.435 41.667 0.00 0.00 36.70 2.57
4304 8792 4.550255 GCGCTGTTTCATTACTCCGTAATC 60.550 45.833 0.00 0.00 36.70 1.75
4305 8793 3.308866 GCGCTGTTTCATTACTCCGTAAT 59.691 43.478 0.00 0.00 39.01 1.89
4306 8794 2.669434 GCGCTGTTTCATTACTCCGTAA 59.331 45.455 0.00 0.00 32.36 3.18
4307 8795 2.264813 GCGCTGTTTCATTACTCCGTA 58.735 47.619 0.00 0.00 0.00 4.02
4308 8796 1.076332 GCGCTGTTTCATTACTCCGT 58.924 50.000 0.00 0.00 0.00 4.69
4371 8859 3.199071 TGCAATTAGAGACATTACCCGGT 59.801 43.478 0.00 0.00 0.00 5.28
4422 8910 0.035056 CCCAATCCTTCGCTTCCACT 60.035 55.000 0.00 0.00 0.00 4.00
4434 8922 1.745489 GTCCTGCGTGACCCAATCC 60.745 63.158 0.00 0.00 0.00 3.01
4452 8941 2.438254 TGCCACTGCCCGCTTATG 60.438 61.111 0.00 0.00 36.33 1.90
4453 8942 2.438434 GTGCCACTGCCCGCTTAT 60.438 61.111 0.00 0.00 36.33 1.73
4459 8948 1.799258 CTCAACAAGTGCCACTGCCC 61.799 60.000 0.00 0.00 36.33 5.36
4464 8953 1.279840 GTCGCTCAACAAGTGCCAC 59.720 57.895 0.00 0.00 35.35 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.