Multiple sequence alignment - TraesCS5A01G068800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G068800 chr5A 100.000 5616 0 0 1 5616 77096691 77091076 0.000000e+00 10371.0
1 TraesCS5A01G068800 chr5A 76.404 267 47 14 332 591 574860645 574860902 4.570000e-26 130.0
2 TraesCS5A01G068800 chr5A 87.692 65 7 1 3386 3449 132569262 132569326 2.170000e-09 75.0
3 TraesCS5A01G068800 chr5A 86.154 65 9 0 529 593 545837029 545836965 2.810000e-08 71.3
4 TraesCS5A01G068800 chr5B 93.282 4972 219 48 695 5615 89638833 89633926 0.000000e+00 7225.0
5 TraesCS5A01G068800 chr5B 82.090 201 19 7 2 188 43156848 43156651 7.530000e-34 156.0
6 TraesCS5A01G068800 chr5B 75.482 363 58 14 241 593 522600453 522600112 1.260000e-31 148.0
7 TraesCS5A01G068800 chr5B 79.885 174 29 5 1 171 458398026 458398196 7.640000e-24 122.0
8 TraesCS5A01G068800 chr5B 92.208 77 5 1 135 210 435782886 435782810 2.140000e-19 108.0
9 TraesCS5A01G068800 chr5B 95.312 64 2 1 3352 3415 563681518 563681456 3.580000e-17 100.0
10 TraesCS5A01G068800 chr5B 85.417 96 8 2 3352 3447 315928946 315928857 1.670000e-15 95.3
11 TraesCS5A01G068800 chr5D 95.587 3286 99 20 1460 4714 80709299 80706029 0.000000e+00 5223.0
12 TraesCS5A01G068800 chr5D 90.158 884 47 12 4746 5615 80706030 80705173 0.000000e+00 1114.0
13 TraesCS5A01G068800 chr5D 96.147 597 17 3 871 1466 80709919 80709328 0.000000e+00 970.0
14 TraesCS5A01G068800 chr5D 93.578 109 4 3 241 348 525315247 525315353 5.820000e-35 159.0
15 TraesCS5A01G068800 chr5D 79.600 250 24 17 243 471 402967494 402967737 2.710000e-33 154.0
16 TraesCS5A01G068800 chr5D 79.268 246 26 13 2 241 407522480 407522254 1.260000e-31 148.0
17 TraesCS5A01G068800 chr5D 88.889 126 7 7 241 364 478459704 478459584 1.260000e-31 148.0
18 TraesCS5A01G068800 chr5D 85.271 129 15 3 96 222 40694162 40694288 4.570000e-26 130.0
19 TraesCS5A01G068800 chr5D 98.361 61 1 0 3352 3412 426293906 426293846 2.140000e-19 108.0
20 TraesCS5A01G068800 chr1D 81.234 389 31 24 3488 3844 490397462 490397084 5.540000e-70 276.0
21 TraesCS5A01G068800 chr1D 83.039 283 25 13 3476 3739 460552271 460551993 9.410000e-58 235.0
22 TraesCS5A01G068800 chr1D 83.398 259 23 11 2068 2313 490397797 490397546 7.320000e-54 222.0
23 TraesCS5A01G068800 chr1D 75.627 558 74 40 4864 5399 460549494 460548977 2.630000e-53 220.0
24 TraesCS5A01G068800 chr1D 89.091 165 17 1 7 170 414487209 414487373 2.650000e-48 204.0
25 TraesCS5A01G068800 chr1D 74.786 583 79 37 4864 5422 490387106 490386568 3.430000e-47 200.0
26 TraesCS5A01G068800 chr1D 86.486 111 10 5 62 170 416525240 416525133 3.550000e-22 117.0
27 TraesCS5A01G068800 chr1D 79.532 171 24 2 1 170 297518305 297518465 1.650000e-20 111.0
28 TraesCS5A01G068800 chr4D 87.059 170 21 1 1 170 80820983 80820815 2.070000e-44 191.0
29 TraesCS5A01G068800 chr4D 86.667 90 12 0 149 238 455914422 455914511 3.580000e-17 100.0
30 TraesCS5A01G068800 chr4D 90.541 74 6 1 151 223 80820792 80820719 4.630000e-16 97.1
31 TraesCS5A01G068800 chr4D 83.654 104 10 4 3349 3447 491348973 491348872 2.150000e-14 91.6
32 TraesCS5A01G068800 chr7D 76.839 367 58 17 243 591 10695747 10695390 1.240000e-41 182.0
33 TraesCS5A01G068800 chr7D 91.597 119 5 5 241 356 101034651 101034767 5.820000e-35 159.0
34 TraesCS5A01G068800 chr7D 77.559 254 44 11 341 591 86077056 86077299 2.110000e-29 141.0
35 TraesCS5A01G068800 chr7D 77.857 140 26 4 475 613 440247428 440247293 1.300000e-11 82.4
36 TraesCS5A01G068800 chr7D 91.379 58 5 0 536 593 461123348 461123405 4.660000e-11 80.5
37 TraesCS5A01G068800 chr7D 90.909 55 5 0 536 590 132740720 132740774 2.170000e-09 75.0
38 TraesCS5A01G068800 chr7D 95.745 47 0 1 3401 3447 600280489 600280533 2.170000e-09 75.0
39 TraesCS5A01G068800 chr3A 85.542 166 23 1 3 167 64014491 64014656 7.480000e-39 172.0
40 TraesCS5A01G068800 chr3A 98.333 60 1 0 3352 3411 621323865 621323806 7.690000e-19 106.0
41 TraesCS5A01G068800 chr7B 76.519 362 56 15 241 593 747619597 747619938 2.690000e-38 171.0
42 TraesCS5A01G068800 chr7B 78.512 242 32 17 241 470 160471403 160471636 2.110000e-29 141.0
43 TraesCS5A01G068800 chr2D 76.901 342 49 21 241 575 77670886 77670568 3.480000e-37 167.0
44 TraesCS5A01G068800 chr2D 93.578 109 5 2 241 348 540067532 540067639 1.620000e-35 161.0
45 TraesCS5A01G068800 chr2D 74.541 381 60 17 241 600 143901183 143900819 1.270000e-26 132.0
46 TraesCS5A01G068800 chr3D 93.636 110 4 3 241 348 611379424 611379316 1.620000e-35 161.0
47 TraesCS5A01G068800 chr3D 83.000 100 15 2 495 593 587710615 587710713 7.750000e-14 89.8
48 TraesCS5A01G068800 chr2A 93.578 109 6 1 241 348 693439498 693439606 1.620000e-35 161.0
49 TraesCS5A01G068800 chr6A 87.692 130 11 2 241 365 17599771 17599900 4.530000e-31 147.0
50 TraesCS5A01G068800 chr4A 82.081 173 24 4 3 170 696532649 696532819 2.110000e-29 141.0
51 TraesCS5A01G068800 chr4A 85.827 127 17 1 44 170 696572896 696573021 3.530000e-27 134.0
52 TraesCS5A01G068800 chr4B 96.923 65 1 1 3351 3415 33069920 33069983 2.140000e-19 108.0
53 TraesCS5A01G068800 chr7A 76.126 222 37 7 373 593 102524474 102524680 9.950000e-18 102.0
54 TraesCS5A01G068800 chr7A 100.000 35 0 0 3414 3448 671145558 671145524 1.310000e-06 65.8
55 TraesCS5A01G068800 chr2B 88.095 84 6 4 3346 3426 589650951 589650869 4.630000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G068800 chr5A 77091076 77096691 5615 True 10371.000000 10371 100.000 1 5616 1 chr5A.!!$R1 5615
1 TraesCS5A01G068800 chr5B 89633926 89638833 4907 True 7225.000000 7225 93.282 695 5615 1 chr5B.!!$R2 4920
2 TraesCS5A01G068800 chr5D 80705173 80709919 4746 True 2435.666667 5223 93.964 871 5615 3 chr5D.!!$R4 4744
3 TraesCS5A01G068800 chr1D 490397084 490397797 713 True 249.000000 276 82.316 2068 3844 2 chr1D.!!$R4 1776
4 TraesCS5A01G068800 chr1D 460548977 460552271 3294 True 227.500000 235 79.333 3476 5399 2 chr1D.!!$R3 1923

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
211 212 0.032217 ACCCATGATTTTCGGGCCAT 60.032 50.000 4.39 0.00 44.49 4.40 F
1132 1146 0.036010 CGACAGGCACTCAATTCCCT 60.036 55.000 0.00 0.00 34.60 4.20 F
1417 1431 2.349275 CCCTTAATTTTTGCATGCGCTG 59.651 45.455 14.09 5.66 39.64 5.18 F
2331 2410 2.281761 AGCCGAACCCAAGCACTG 60.282 61.111 0.00 0.00 0.00 3.66 F
4003 5309 0.040958 GAGTTCTGCGTGCAGGTTTG 60.041 55.000 20.78 0.00 43.75 2.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1409 1423 0.109458 ATTCAGCACAACAGCGCATG 60.109 50.0 11.47 8.37 40.15 4.06 R
2331 2410 0.603065 GAGTTGTTCCCACCATTGCC 59.397 55.0 0.00 0.00 0.00 4.52 R
3009 3088 1.032014 AGCACAGAAACAAATGCGGT 58.968 45.0 0.00 0.00 42.98 5.68 R
4032 5346 0.177836 ATGTAGCATGGCACGCAGTA 59.822 50.0 8.75 0.00 41.61 2.74 R
5578 7311 0.324738 TCACCGGCTCCATTCTCTCT 60.325 55.0 0.00 0.00 0.00 3.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.967397 GCCCGGTGCTAAAAACCC 59.033 61.111 0.00 0.00 36.87 4.11
35 36 1.904378 GCCCGGTGCTAAAAACCCA 60.904 57.895 0.00 0.00 36.87 4.51
36 37 1.465200 GCCCGGTGCTAAAAACCCAA 61.465 55.000 0.00 0.00 36.87 4.12
37 38 0.601057 CCCGGTGCTAAAAACCCAAG 59.399 55.000 0.00 0.00 33.88 3.61
38 39 1.324383 CCGGTGCTAAAAACCCAAGT 58.676 50.000 0.00 0.00 33.88 3.16
39 40 1.684450 CCGGTGCTAAAAACCCAAGTT 59.316 47.619 0.00 0.00 38.03 2.66
40 41 2.287970 CCGGTGCTAAAAACCCAAGTTC 60.288 50.000 0.00 0.00 34.19 3.01
41 42 2.603652 CGGTGCTAAAAACCCAAGTTCG 60.604 50.000 0.00 0.00 34.19 3.95
42 43 2.619646 GGTGCTAAAAACCCAAGTTCGA 59.380 45.455 0.00 0.00 34.19 3.71
43 44 3.304458 GGTGCTAAAAACCCAAGTTCGAG 60.304 47.826 0.00 0.00 34.19 4.04
44 45 2.292292 TGCTAAAAACCCAAGTTCGAGC 59.708 45.455 0.00 0.00 34.19 5.03
45 46 2.351447 GCTAAAAACCCAAGTTCGAGCC 60.351 50.000 0.00 0.00 34.19 4.70
46 47 1.037493 AAAAACCCAAGTTCGAGCCC 58.963 50.000 0.00 0.00 34.19 5.19
47 48 1.170290 AAAACCCAAGTTCGAGCCCG 61.170 55.000 0.00 0.00 34.19 6.13
48 49 2.047213 AAACCCAAGTTCGAGCCCGA 62.047 55.000 0.00 0.00 43.96 5.14
49 50 2.434359 CCCAAGTTCGAGCCCGAC 60.434 66.667 0.00 0.00 45.50 4.79
50 51 2.434359 CCAAGTTCGAGCCCGACC 60.434 66.667 0.00 0.00 45.50 4.79
51 52 2.657237 CAAGTTCGAGCCCGACCT 59.343 61.111 0.00 0.00 45.50 3.85
52 53 1.738099 CAAGTTCGAGCCCGACCTG 60.738 63.158 0.00 0.00 45.50 4.00
53 54 1.906824 AAGTTCGAGCCCGACCTGA 60.907 57.895 0.00 0.00 45.50 3.86
54 55 2.126031 GTTCGAGCCCGACCTGAC 60.126 66.667 0.00 0.00 45.50 3.51
55 56 3.379445 TTCGAGCCCGACCTGACC 61.379 66.667 0.00 0.00 45.50 4.02
62 63 3.075005 CCGACCTGACCCGACCAT 61.075 66.667 0.00 0.00 0.00 3.55
63 64 2.494918 CGACCTGACCCGACCATC 59.505 66.667 0.00 0.00 0.00 3.51
64 65 2.494918 GACCTGACCCGACCATCG 59.505 66.667 0.00 0.00 40.07 3.84
73 74 2.897207 CGACCATCGGGCCTACAA 59.103 61.111 0.84 0.00 36.00 2.41
74 75 1.219664 CGACCATCGGGCCTACAAA 59.780 57.895 0.84 0.00 36.00 2.83
75 76 0.391927 CGACCATCGGGCCTACAAAA 60.392 55.000 0.84 0.00 36.00 2.44
76 77 1.745827 CGACCATCGGGCCTACAAAAT 60.746 52.381 0.84 0.00 36.00 1.82
77 78 1.947456 GACCATCGGGCCTACAAAATC 59.053 52.381 0.84 0.00 37.90 2.17
78 79 0.944386 CCATCGGGCCTACAAAATCG 59.056 55.000 0.84 0.00 0.00 3.34
79 80 0.944386 CATCGGGCCTACAAAATCGG 59.056 55.000 0.84 0.00 0.00 4.18
80 81 0.179029 ATCGGGCCTACAAAATCGGG 60.179 55.000 0.84 0.00 0.00 5.14
81 82 2.478033 CGGGCCTACAAAATCGGGC 61.478 63.158 0.84 0.00 43.42 6.13
83 84 3.521605 GCCTACAAAATCGGGCCC 58.478 61.111 13.57 13.57 38.77 5.80
84 85 2.478033 GCCTACAAAATCGGGCCCG 61.478 63.158 39.13 39.13 38.77 6.13
97 98 2.821810 GCCCGAGCCTGAGAAAGC 60.822 66.667 0.00 0.00 0.00 3.51
98 99 2.124942 CCCGAGCCTGAGAAAGCC 60.125 66.667 0.00 0.00 0.00 4.35
99 100 2.124942 CCGAGCCTGAGAAAGCCC 60.125 66.667 0.00 0.00 0.00 5.19
100 101 2.510238 CGAGCCTGAGAAAGCCCG 60.510 66.667 0.00 0.00 0.00 6.13
101 102 2.982130 GAGCCTGAGAAAGCCCGA 59.018 61.111 0.00 0.00 0.00 5.14
102 103 1.448717 GAGCCTGAGAAAGCCCGAC 60.449 63.158 0.00 0.00 0.00 4.79
103 104 2.172483 GAGCCTGAGAAAGCCCGACA 62.172 60.000 0.00 0.00 0.00 4.35
104 105 2.035442 GCCTGAGAAAGCCCGACAC 61.035 63.158 0.00 0.00 0.00 3.67
105 106 1.738099 CCTGAGAAAGCCCGACACG 60.738 63.158 0.00 0.00 0.00 4.49
132 133 4.509737 GCCTGGCCCGACTACGAC 62.510 72.222 7.66 0.00 42.66 4.34
133 134 2.754658 CCTGGCCCGACTACGACT 60.755 66.667 0.00 0.00 42.66 4.18
134 135 2.348888 CCTGGCCCGACTACGACTT 61.349 63.158 0.00 0.00 42.66 3.01
135 136 1.033746 CCTGGCCCGACTACGACTTA 61.034 60.000 0.00 0.00 42.66 2.24
136 137 0.813184 CTGGCCCGACTACGACTTAA 59.187 55.000 0.00 0.00 42.66 1.85
137 138 1.203052 CTGGCCCGACTACGACTTAAA 59.797 52.381 0.00 0.00 42.66 1.52
138 139 1.617850 TGGCCCGACTACGACTTAAAA 59.382 47.619 0.00 0.00 42.66 1.52
139 140 1.995484 GGCCCGACTACGACTTAAAAC 59.005 52.381 0.00 0.00 42.66 2.43
140 141 2.610232 GGCCCGACTACGACTTAAAACA 60.610 50.000 0.00 0.00 42.66 2.83
141 142 2.409715 GCCCGACTACGACTTAAAACAC 59.590 50.000 0.00 0.00 42.66 3.32
142 143 2.658325 CCCGACTACGACTTAAAACACG 59.342 50.000 0.00 0.00 42.66 4.49
143 144 3.300009 CCGACTACGACTTAAAACACGT 58.700 45.455 0.00 0.00 42.66 4.49
144 145 3.730715 CCGACTACGACTTAAAACACGTT 59.269 43.478 0.00 0.00 42.66 3.99
145 146 4.207019 CCGACTACGACTTAAAACACGTTT 59.793 41.667 0.00 0.00 42.66 3.60
146 147 5.276348 CCGACTACGACTTAAAACACGTTTT 60.276 40.000 12.20 12.20 42.39 2.43
147 148 5.608830 CGACTACGACTTAAAACACGTTTTG 59.391 40.000 16.25 5.01 41.11 2.44
148 149 6.407475 ACTACGACTTAAAACACGTTTTGT 57.593 33.333 16.25 7.85 42.18 2.83
156 157 2.027460 CACGTTTTGTGCAGGCCC 59.973 61.111 0.00 0.00 42.70 5.80
157 158 3.591835 ACGTTTTGTGCAGGCCCG 61.592 61.111 0.00 0.00 0.00 6.13
158 159 3.283684 CGTTTTGTGCAGGCCCGA 61.284 61.111 0.00 0.00 0.00 5.14
159 160 2.644992 GTTTTGTGCAGGCCCGAG 59.355 61.111 0.00 0.00 0.00 4.63
160 161 3.294493 TTTTGTGCAGGCCCGAGC 61.294 61.111 0.00 1.41 38.76 5.03
187 188 4.007644 TGGCACACTCGGGCTCAG 62.008 66.667 0.00 0.00 0.00 3.35
198 199 4.864334 GGCTCAGCCCGACCCATG 62.864 72.222 3.37 0.00 44.06 3.66
199 200 3.785859 GCTCAGCCCGACCCATGA 61.786 66.667 0.00 0.00 0.00 3.07
200 201 3.112205 GCTCAGCCCGACCCATGAT 62.112 63.158 0.00 0.00 0.00 2.45
201 202 1.528824 CTCAGCCCGACCCATGATT 59.471 57.895 0.00 0.00 0.00 2.57
202 203 0.107017 CTCAGCCCGACCCATGATTT 60.107 55.000 0.00 0.00 0.00 2.17
203 204 0.331278 TCAGCCCGACCCATGATTTT 59.669 50.000 0.00 0.00 0.00 1.82
204 205 0.740737 CAGCCCGACCCATGATTTTC 59.259 55.000 0.00 0.00 0.00 2.29
205 206 0.748005 AGCCCGACCCATGATTTTCG 60.748 55.000 0.00 0.00 0.00 3.46
207 208 2.404083 CCGACCCATGATTTTCGGG 58.596 57.895 13.40 0.00 45.95 5.14
208 209 1.724582 CCGACCCATGATTTTCGGGC 61.725 60.000 13.40 0.00 45.95 6.13
209 210 1.724582 CGACCCATGATTTTCGGGCC 61.725 60.000 0.00 0.00 44.49 5.80
210 211 0.682855 GACCCATGATTTTCGGGCCA 60.683 55.000 4.39 0.00 44.49 5.36
211 212 0.032217 ACCCATGATTTTCGGGCCAT 60.032 50.000 4.39 0.00 44.49 4.40
212 213 0.675633 CCCATGATTTTCGGGCCATC 59.324 55.000 4.39 0.00 31.89 3.51
213 214 1.696063 CCATGATTTTCGGGCCATCT 58.304 50.000 4.39 0.00 0.00 2.90
214 215 1.338973 CCATGATTTTCGGGCCATCTG 59.661 52.381 4.39 0.00 0.00 2.90
215 216 1.338973 CATGATTTTCGGGCCATCTGG 59.661 52.381 4.39 0.00 38.53 3.86
216 217 0.395586 TGATTTTCGGGCCATCTGGG 60.396 55.000 4.39 0.00 40.85 4.45
217 218 0.395724 GATTTTCGGGCCATCTGGGT 60.396 55.000 4.39 0.00 39.65 4.51
218 219 0.395724 ATTTTCGGGCCATCTGGGTC 60.396 55.000 4.39 0.00 42.12 4.46
219 220 2.813226 TTTTCGGGCCATCTGGGTCG 62.813 60.000 4.39 0.00 44.60 4.79
224 225 4.864334 GCCATCTGGGTCGGGCTG 62.864 72.222 0.00 0.00 43.09 4.85
225 226 4.864334 CCATCTGGGTCGGGCTGC 62.864 72.222 0.00 0.00 0.00 5.25
226 227 4.864334 CATCTGGGTCGGGCTGCC 62.864 72.222 11.05 11.05 0.00 4.85
242 243 3.708013 GCCCATGGCTAGGTCTAAC 57.292 57.895 6.09 0.00 46.69 2.34
243 244 0.108774 GCCCATGGCTAGGTCTAACC 59.891 60.000 6.09 0.00 46.69 2.85
244 245 0.393077 CCCATGGCTAGGTCTAACCG 59.607 60.000 6.09 0.00 44.90 4.44
245 246 1.120530 CCATGGCTAGGTCTAACCGT 58.879 55.000 0.00 0.00 44.90 4.83
246 247 1.202533 CCATGGCTAGGTCTAACCGTG 60.203 57.143 0.00 10.98 44.90 4.94
247 248 0.464452 ATGGCTAGGTCTAACCGTGC 59.536 55.000 7.52 7.52 44.90 5.34
248 249 4.829588 GCTAGGTCTAACCGTGCC 57.170 61.111 0.00 0.00 44.90 5.01
249 250 2.200052 GCTAGGTCTAACCGTGCCT 58.800 57.895 0.00 0.00 44.90 4.75
250 251 0.102663 GCTAGGTCTAACCGTGCCTC 59.897 60.000 0.00 0.00 44.90 4.70
251 252 1.765230 CTAGGTCTAACCGTGCCTCT 58.235 55.000 0.00 0.00 44.90 3.69
252 253 1.677052 CTAGGTCTAACCGTGCCTCTC 59.323 57.143 0.00 0.00 44.90 3.20
253 254 1.139095 GGTCTAACCGTGCCTCTCG 59.861 63.158 0.00 0.00 0.00 4.04
254 255 1.516603 GTCTAACCGTGCCTCTCGC 60.517 63.158 0.00 0.00 38.31 5.03
271 272 2.050442 CGGAAGCAAAACCGTGCC 60.050 61.111 0.00 0.00 46.14 5.01
272 273 2.551912 CGGAAGCAAAACCGTGCCT 61.552 57.895 0.00 0.00 46.14 4.75
273 274 1.285950 GGAAGCAAAACCGTGCCTC 59.714 57.895 0.00 0.00 46.14 4.70
274 275 1.172812 GGAAGCAAAACCGTGCCTCT 61.173 55.000 0.00 0.00 46.14 3.69
275 276 0.238553 GAAGCAAAACCGTGCCTCTC 59.761 55.000 0.00 0.00 46.14 3.20
276 277 1.507141 AAGCAAAACCGTGCCTCTCG 61.507 55.000 0.00 0.00 46.14 4.04
277 278 2.251642 GCAAAACCGTGCCTCTCGT 61.252 57.895 0.00 0.00 38.66 4.18
278 279 1.569493 CAAAACCGTGCCTCTCGTG 59.431 57.895 0.00 0.00 0.00 4.35
279 280 0.878523 CAAAACCGTGCCTCTCGTGA 60.879 55.000 0.00 0.00 0.00 4.35
280 281 0.179067 AAAACCGTGCCTCTCGTGAA 60.179 50.000 0.00 0.00 0.00 3.18
281 282 0.179067 AAACCGTGCCTCTCGTGAAA 60.179 50.000 0.00 0.00 0.00 2.69
282 283 0.600255 AACCGTGCCTCTCGTGAAAG 60.600 55.000 0.00 0.00 0.00 2.62
283 284 1.289066 CCGTGCCTCTCGTGAAAGA 59.711 57.895 0.00 0.00 0.00 2.52
284 285 0.319555 CCGTGCCTCTCGTGAAAGAA 60.320 55.000 0.00 0.00 0.00 2.52
285 286 1.497991 CGTGCCTCTCGTGAAAGAAA 58.502 50.000 0.00 0.00 0.00 2.52
286 287 1.864711 CGTGCCTCTCGTGAAAGAAAA 59.135 47.619 0.00 0.00 0.00 2.29
287 288 2.286833 CGTGCCTCTCGTGAAAGAAAAA 59.713 45.455 0.00 0.00 0.00 1.94
312 313 8.981370 AAAAACAGAAACACGTTTTTCTTTTC 57.019 26.923 23.49 8.62 46.88 2.29
313 314 6.699895 AACAGAAACACGTTTTTCTTTTCC 57.300 33.333 23.49 0.70 42.09 3.13
314 315 4.854839 ACAGAAACACGTTTTTCTTTTCCG 59.145 37.500 23.49 15.57 42.09 4.30
315 316 4.854839 CAGAAACACGTTTTTCTTTTCCGT 59.145 37.500 23.49 2.53 42.09 4.69
316 317 5.343860 CAGAAACACGTTTTTCTTTTCCGTT 59.656 36.000 23.49 0.60 42.09 4.44
317 318 5.921976 AGAAACACGTTTTTCTTTTCCGTTT 59.078 32.000 21.06 7.74 42.09 3.60
318 319 5.750484 AACACGTTTTTCTTTTCCGTTTC 57.250 34.783 0.00 0.00 0.00 2.78
319 320 4.168014 ACACGTTTTTCTTTTCCGTTTCC 58.832 39.130 0.00 0.00 0.00 3.13
320 321 3.238798 CACGTTTTTCTTTTCCGTTTCCG 59.761 43.478 0.00 0.00 0.00 4.30
321 322 3.126686 ACGTTTTTCTTTTCCGTTTCCGA 59.873 39.130 0.00 0.00 35.63 4.55
322 323 3.479590 CGTTTTTCTTTTCCGTTTCCGAC 59.520 43.478 0.00 0.00 35.63 4.79
323 324 4.413969 GTTTTTCTTTTCCGTTTCCGACA 58.586 39.130 0.00 0.00 35.63 4.35
324 325 3.955771 TTTCTTTTCCGTTTCCGACAG 57.044 42.857 0.00 0.00 35.63 3.51
325 326 1.873698 TCTTTTCCGTTTCCGACAGG 58.126 50.000 0.00 0.00 35.63 4.00
326 327 0.237498 CTTTTCCGTTTCCGACAGGC 59.763 55.000 0.00 0.00 37.47 4.85
327 328 0.464013 TTTTCCGTTTCCGACAGGCA 60.464 50.000 0.00 0.00 37.47 4.75
328 329 1.161563 TTTCCGTTTCCGACAGGCAC 61.162 55.000 0.00 0.00 37.47 5.01
329 330 3.411351 CCGTTTCCGACAGGCACG 61.411 66.667 0.00 3.20 41.05 5.34
400 401 8.631480 TTTCTATCCAAAAGTTAAGGAAGACC 57.369 34.615 0.80 0.00 34.62 3.85
401 402 6.403878 TCTATCCAAAAGTTAAGGAAGACCG 58.596 40.000 0.80 0.00 41.83 4.79
402 403 4.693042 TCCAAAAGTTAAGGAAGACCGA 57.307 40.909 0.00 0.00 41.83 4.69
403 404 5.237236 TCCAAAAGTTAAGGAAGACCGAT 57.763 39.130 0.00 0.00 41.83 4.18
404 405 5.001232 TCCAAAAGTTAAGGAAGACCGATG 58.999 41.667 0.00 0.00 41.83 3.84
405 406 4.156008 CCAAAAGTTAAGGAAGACCGATGG 59.844 45.833 0.00 0.00 41.83 3.51
406 407 4.903045 AAAGTTAAGGAAGACCGATGGA 57.097 40.909 0.00 0.00 41.83 3.41
407 408 4.903045 AAGTTAAGGAAGACCGATGGAA 57.097 40.909 0.00 0.00 41.83 3.53
408 409 4.903045 AGTTAAGGAAGACCGATGGAAA 57.097 40.909 0.00 0.00 41.83 3.13
409 410 5.237236 AGTTAAGGAAGACCGATGGAAAA 57.763 39.130 0.00 0.00 41.83 2.29
410 411 5.816682 AGTTAAGGAAGACCGATGGAAAAT 58.183 37.500 0.00 0.00 41.83 1.82
411 412 5.880887 AGTTAAGGAAGACCGATGGAAAATC 59.119 40.000 0.00 0.00 41.83 2.17
412 413 2.906354 AGGAAGACCGATGGAAAATCG 58.094 47.619 0.82 0.82 41.83 3.34
413 414 2.500098 AGGAAGACCGATGGAAAATCGA 59.500 45.455 9.19 0.00 43.59 3.59
414 415 3.055385 AGGAAGACCGATGGAAAATCGAA 60.055 43.478 9.19 0.00 43.59 3.71
415 416 3.687698 GGAAGACCGATGGAAAATCGAAA 59.312 43.478 9.19 0.00 43.59 3.46
416 417 4.436986 GGAAGACCGATGGAAAATCGAAAC 60.437 45.833 9.19 1.23 43.59 2.78
417 418 3.670625 AGACCGATGGAAAATCGAAACA 58.329 40.909 9.19 0.00 43.59 2.83
418 419 3.435671 AGACCGATGGAAAATCGAAACAC 59.564 43.478 9.19 0.00 43.59 3.32
419 420 2.486592 ACCGATGGAAAATCGAAACACC 59.513 45.455 9.19 0.00 43.59 4.16
420 421 2.486203 CCGATGGAAAATCGAAACACCA 59.514 45.455 9.19 7.10 43.59 4.17
421 422 3.057876 CCGATGGAAAATCGAAACACCAA 60.058 43.478 9.19 0.00 43.59 3.67
422 423 4.541779 CGATGGAAAATCGAAACACCAAA 58.458 39.130 1.58 0.00 43.59 3.28
423 424 4.979197 CGATGGAAAATCGAAACACCAAAA 59.021 37.500 1.58 0.00 43.59 2.44
424 425 5.460419 CGATGGAAAATCGAAACACCAAAAA 59.540 36.000 1.58 0.00 43.59 1.94
455 456 5.712217 AAAACGTTCTAAAAGCCAAAAGC 57.288 34.783 0.00 0.00 44.25 3.51
503 504 3.876300 CGAAGGAAACGCCCAGAG 58.124 61.111 0.00 0.00 37.37 3.35
504 505 2.391389 CGAAGGAAACGCCCAGAGC 61.391 63.158 0.00 0.00 37.37 4.09
505 506 1.302511 GAAGGAAACGCCCAGAGCA 60.303 57.895 0.00 0.00 44.04 4.26
506 507 1.578206 GAAGGAAACGCCCAGAGCAC 61.578 60.000 0.00 0.00 44.04 4.40
507 508 3.423154 GGAAACGCCCAGAGCACG 61.423 66.667 0.00 0.00 44.04 5.34
508 509 2.357034 GAAACGCCCAGAGCACGA 60.357 61.111 0.00 0.00 44.04 4.35
509 510 2.665185 AAACGCCCAGAGCACGAC 60.665 61.111 0.00 0.00 44.04 4.34
510 511 3.454587 AAACGCCCAGAGCACGACA 62.455 57.895 0.00 0.00 44.04 4.35
511 512 2.731691 AAACGCCCAGAGCACGACAT 62.732 55.000 0.00 0.00 44.04 3.06
512 513 3.190849 CGCCCAGAGCACGACATG 61.191 66.667 0.00 0.00 44.04 3.21
513 514 2.046892 GCCCAGAGCACGACATGT 60.047 61.111 0.00 0.00 42.97 3.21
522 523 4.910956 ACGACATGTGATGGACGG 57.089 55.556 1.15 0.00 38.04 4.79
523 524 1.447838 ACGACATGTGATGGACGGC 60.448 57.895 1.15 0.00 38.04 5.68
524 525 1.153568 CGACATGTGATGGACGGCT 60.154 57.895 1.15 0.00 33.23 5.52
525 526 0.102300 CGACATGTGATGGACGGCTA 59.898 55.000 1.15 0.00 33.23 3.93
526 527 1.470805 CGACATGTGATGGACGGCTAA 60.471 52.381 1.15 0.00 33.23 3.09
527 528 2.627945 GACATGTGATGGACGGCTAAA 58.372 47.619 1.15 0.00 33.60 1.85
528 529 3.006940 GACATGTGATGGACGGCTAAAA 58.993 45.455 1.15 0.00 33.60 1.52
529 530 3.417101 ACATGTGATGGACGGCTAAAAA 58.583 40.909 0.00 0.00 33.60 1.94
530 531 3.190535 ACATGTGATGGACGGCTAAAAAC 59.809 43.478 0.00 0.00 33.60 2.43
531 532 2.852449 TGTGATGGACGGCTAAAAACA 58.148 42.857 0.00 0.00 0.00 2.83
532 533 2.550606 TGTGATGGACGGCTAAAAACAC 59.449 45.455 0.00 0.00 0.00 3.32
533 534 1.801771 TGATGGACGGCTAAAAACACG 59.198 47.619 0.00 0.00 0.00 4.49
534 535 0.519961 ATGGACGGCTAAAAACACGC 59.480 50.000 0.00 0.00 0.00 5.34
535 536 1.208358 GGACGGCTAAAAACACGCC 59.792 57.895 0.00 0.00 40.40 5.68
536 537 1.508808 GGACGGCTAAAAACACGCCA 61.509 55.000 0.00 0.00 43.95 5.69
537 538 0.308376 GACGGCTAAAAACACGCCAA 59.692 50.000 0.00 0.00 43.95 4.52
538 539 0.309612 ACGGCTAAAAACACGCCAAG 59.690 50.000 0.00 0.00 43.95 3.61
539 540 0.309612 CGGCTAAAAACACGCCAAGT 59.690 50.000 0.00 0.00 43.95 3.16
548 549 4.771127 ACGCCAAGTGACGTTGAT 57.229 50.000 0.00 0.00 40.09 2.57
549 550 3.000815 ACGCCAAGTGACGTTGATT 57.999 47.368 0.00 0.00 40.09 2.57
550 551 0.586319 ACGCCAAGTGACGTTGATTG 59.414 50.000 0.00 0.00 40.09 2.67
551 552 0.586319 CGCCAAGTGACGTTGATTGT 59.414 50.000 0.00 0.00 0.00 2.71
552 553 1.002900 CGCCAAGTGACGTTGATTGTT 60.003 47.619 0.00 0.00 0.00 2.83
553 554 2.222213 CGCCAAGTGACGTTGATTGTTA 59.778 45.455 0.00 0.00 0.00 2.41
554 555 3.120338 CGCCAAGTGACGTTGATTGTTAT 60.120 43.478 0.00 0.00 0.00 1.89
555 556 4.158384 GCCAAGTGACGTTGATTGTTATG 58.842 43.478 0.00 0.00 0.00 1.90
556 557 4.083537 GCCAAGTGACGTTGATTGTTATGA 60.084 41.667 0.00 0.00 0.00 2.15
557 558 5.621422 CCAAGTGACGTTGATTGTTATGAG 58.379 41.667 0.00 0.00 0.00 2.90
558 559 5.390885 CCAAGTGACGTTGATTGTTATGAGG 60.391 44.000 0.00 0.00 0.00 3.86
559 560 4.894784 AGTGACGTTGATTGTTATGAGGT 58.105 39.130 0.00 0.00 0.00 3.85
560 561 4.929808 AGTGACGTTGATTGTTATGAGGTC 59.070 41.667 0.00 0.00 0.00 3.85
561 562 4.092968 GTGACGTTGATTGTTATGAGGTCC 59.907 45.833 0.00 0.00 0.00 4.46
562 563 3.606687 ACGTTGATTGTTATGAGGTCCC 58.393 45.455 0.00 0.00 0.00 4.46
563 564 2.943033 CGTTGATTGTTATGAGGTCCCC 59.057 50.000 0.00 0.00 0.00 4.81
564 565 2.943033 GTTGATTGTTATGAGGTCCCCG 59.057 50.000 0.00 0.00 0.00 5.73
565 566 2.473070 TGATTGTTATGAGGTCCCCGA 58.527 47.619 0.00 0.00 0.00 5.14
566 567 2.841266 TGATTGTTATGAGGTCCCCGAA 59.159 45.455 0.00 0.00 0.00 4.30
567 568 3.118408 TGATTGTTATGAGGTCCCCGAAG 60.118 47.826 0.00 0.00 0.00 3.79
568 569 2.241281 TGTTATGAGGTCCCCGAAGA 57.759 50.000 0.00 0.00 0.00 2.87
569 570 2.542550 TGTTATGAGGTCCCCGAAGAA 58.457 47.619 0.00 0.00 0.00 2.52
570 571 2.500098 TGTTATGAGGTCCCCGAAGAAG 59.500 50.000 0.00 0.00 0.00 2.85
571 572 1.120530 TATGAGGTCCCCGAAGAAGC 58.879 55.000 0.00 0.00 0.00 3.86
572 573 1.961180 ATGAGGTCCCCGAAGAAGCG 61.961 60.000 0.00 0.00 0.00 4.68
573 574 4.083862 AGGTCCCCGAAGAAGCGC 62.084 66.667 0.00 0.00 0.00 5.92
574 575 4.083862 GGTCCCCGAAGAAGCGCT 62.084 66.667 2.64 2.64 0.00 5.92
575 576 2.509561 GTCCCCGAAGAAGCGCTC 60.510 66.667 12.06 4.30 0.00 5.03
576 577 4.129737 TCCCCGAAGAAGCGCTCG 62.130 66.667 12.06 10.54 0.00 5.03
577 578 4.436998 CCCCGAAGAAGCGCTCGT 62.437 66.667 12.06 2.20 0.00 4.18
578 579 2.881352 CCCGAAGAAGCGCTCGTC 60.881 66.667 12.06 5.48 0.00 4.20
579 580 2.126463 CCGAAGAAGCGCTCGTCA 60.126 61.111 12.06 0.00 32.54 4.35
580 581 1.733041 CCGAAGAAGCGCTCGTCAA 60.733 57.895 12.06 0.00 32.54 3.18
581 582 1.412606 CGAAGAAGCGCTCGTCAAC 59.587 57.895 12.06 2.99 32.54 3.18
582 583 1.004277 CGAAGAAGCGCTCGTCAACT 61.004 55.000 12.06 0.00 32.54 3.16
583 584 1.728179 CGAAGAAGCGCTCGTCAACTA 60.728 52.381 12.06 0.00 32.54 2.24
584 585 1.914700 GAAGAAGCGCTCGTCAACTAG 59.085 52.381 12.06 0.00 33.18 2.57
585 586 0.882474 AGAAGCGCTCGTCAACTAGT 59.118 50.000 12.06 0.00 0.00 2.57
586 587 1.269998 AGAAGCGCTCGTCAACTAGTT 59.730 47.619 12.06 1.12 0.00 2.24
587 588 1.387084 GAAGCGCTCGTCAACTAGTTG 59.613 52.381 26.60 26.60 41.71 3.16
588 589 1.009389 AGCGCTCGTCAACTAGTTGC 61.009 55.000 27.49 20.92 40.24 4.17
589 590 1.009389 GCGCTCGTCAACTAGTTGCT 61.009 55.000 27.49 0.00 40.24 3.91
590 591 0.985549 CGCTCGTCAACTAGTTGCTC 59.014 55.000 27.49 20.75 40.24 4.26
591 592 1.401670 CGCTCGTCAACTAGTTGCTCT 60.402 52.381 27.49 0.00 40.24 4.09
592 593 2.255316 GCTCGTCAACTAGTTGCTCTC 58.745 52.381 27.49 16.63 40.24 3.20
593 594 2.094957 GCTCGTCAACTAGTTGCTCTCT 60.095 50.000 27.49 0.00 40.24 3.10
594 595 3.753842 CTCGTCAACTAGTTGCTCTCTC 58.246 50.000 27.49 13.19 40.24 3.20
595 596 2.488545 TCGTCAACTAGTTGCTCTCTCC 59.511 50.000 27.49 9.94 40.24 3.71
596 597 2.490115 CGTCAACTAGTTGCTCTCTCCT 59.510 50.000 27.49 0.00 40.24 3.69
597 598 3.690139 CGTCAACTAGTTGCTCTCTCCTA 59.310 47.826 27.49 7.19 40.24 2.94
598 599 4.336993 CGTCAACTAGTTGCTCTCTCCTAT 59.663 45.833 27.49 0.00 40.24 2.57
599 600 5.527951 CGTCAACTAGTTGCTCTCTCCTATA 59.472 44.000 27.49 5.99 40.24 1.31
600 601 6.293190 CGTCAACTAGTTGCTCTCTCCTATAG 60.293 46.154 27.49 2.45 40.24 1.31
601 602 6.016610 GTCAACTAGTTGCTCTCTCCTATAGG 60.017 46.154 27.49 13.07 40.24 2.57
602 603 5.915744 ACTAGTTGCTCTCTCCTATAGGA 57.084 43.478 20.53 20.53 43.08 2.94
603 604 5.627135 ACTAGTTGCTCTCTCCTATAGGAC 58.373 45.833 18.00 8.30 39.78 3.85
604 605 3.839778 AGTTGCTCTCTCCTATAGGACC 58.160 50.000 18.00 4.82 39.78 4.46
605 606 3.465588 AGTTGCTCTCTCCTATAGGACCT 59.534 47.826 18.00 0.00 39.78 3.85
606 607 3.799432 TGCTCTCTCCTATAGGACCTC 57.201 52.381 18.00 6.17 39.78 3.85
607 608 2.377193 TGCTCTCTCCTATAGGACCTCC 59.623 54.545 18.00 6.14 39.78 4.30
608 609 2.291346 GCTCTCTCCTATAGGACCTCCC 60.291 59.091 18.00 3.13 39.78 4.30
617 618 2.599408 TAGGACCTCCCTATAAGGCG 57.401 55.000 0.00 0.00 45.48 5.52
618 619 0.832559 AGGACCTCCCTATAAGGCGC 60.833 60.000 0.00 0.00 45.48 6.53
619 620 1.672320 GACCTCCCTATAAGGCGCC 59.328 63.158 21.89 21.89 37.42 6.53
620 621 1.074775 ACCTCCCTATAAGGCGCCA 60.075 57.895 31.54 9.64 37.42 5.69
621 622 0.473886 ACCTCCCTATAAGGCGCCAT 60.474 55.000 31.54 21.32 37.42 4.40
622 623 0.693049 CCTCCCTATAAGGCGCCATT 59.307 55.000 31.54 21.41 32.73 3.16
623 624 1.073923 CCTCCCTATAAGGCGCCATTT 59.926 52.381 31.54 18.15 32.73 2.32
624 625 2.304761 CCTCCCTATAAGGCGCCATTTA 59.695 50.000 31.54 19.90 32.73 1.40
625 626 3.600388 CTCCCTATAAGGCGCCATTTAG 58.400 50.000 31.54 23.94 32.73 1.85
626 627 2.304761 TCCCTATAAGGCGCCATTTAGG 59.695 50.000 30.15 30.15 35.38 2.69
627 628 2.304761 CCCTATAAGGCGCCATTTAGGA 59.695 50.000 35.33 16.91 34.52 2.94
628 629 3.244770 CCCTATAAGGCGCCATTTAGGAA 60.245 47.826 35.33 10.50 34.52 3.36
629 630 4.567747 CCCTATAAGGCGCCATTTAGGAAT 60.568 45.833 35.33 16.32 34.52 3.01
630 631 5.010282 CCTATAAGGCGCCATTTAGGAATT 58.990 41.667 32.21 17.31 41.22 2.17
631 632 4.853924 ATAAGGCGCCATTTAGGAATTG 57.146 40.909 31.54 0.00 41.22 2.32
632 633 0.746659 AGGCGCCATTTAGGAATTGC 59.253 50.000 31.54 0.00 41.22 3.56
633 634 0.249447 GGCGCCATTTAGGAATTGCC 60.249 55.000 24.80 0.00 41.22 4.52
642 643 4.360643 GGAATTGCCTGCCCATGA 57.639 55.556 0.00 0.00 0.00 3.07
643 644 1.818555 GGAATTGCCTGCCCATGAC 59.181 57.895 0.00 0.00 0.00 3.06
644 645 0.971959 GGAATTGCCTGCCCATGACA 60.972 55.000 0.00 0.00 0.00 3.58
645 646 0.896923 GAATTGCCTGCCCATGACAA 59.103 50.000 0.00 0.00 0.00 3.18
646 647 1.483415 GAATTGCCTGCCCATGACAAT 59.517 47.619 0.00 0.00 32.53 2.71
647 648 2.457813 ATTGCCTGCCCATGACAATA 57.542 45.000 0.00 0.00 0.00 1.90
648 649 1.766494 TTGCCTGCCCATGACAATAG 58.234 50.000 0.00 0.00 0.00 1.73
649 650 0.625316 TGCCTGCCCATGACAATAGT 59.375 50.000 0.00 0.00 0.00 2.12
650 651 1.312815 GCCTGCCCATGACAATAGTC 58.687 55.000 0.00 0.00 45.19 2.59
651 652 1.133976 GCCTGCCCATGACAATAGTCT 60.134 52.381 0.00 0.00 45.20 3.24
652 653 2.684927 GCCTGCCCATGACAATAGTCTT 60.685 50.000 0.00 0.00 45.20 3.01
653 654 3.624777 CCTGCCCATGACAATAGTCTTT 58.375 45.455 0.00 0.00 45.20 2.52
654 655 4.019174 CCTGCCCATGACAATAGTCTTTT 58.981 43.478 0.00 0.00 45.20 2.27
655 656 4.463891 CCTGCCCATGACAATAGTCTTTTT 59.536 41.667 0.00 0.00 45.20 1.94
678 679 7.630242 TTTTTAGAAGAGCCCATGACAATAG 57.370 36.000 0.00 0.00 0.00 1.73
679 680 5.957771 TTAGAAGAGCCCATGACAATAGT 57.042 39.130 0.00 0.00 0.00 2.12
680 681 4.414337 AGAAGAGCCCATGACAATAGTC 57.586 45.455 0.00 0.00 45.19 2.59
754 755 3.626996 CTCGGGCCCATGTTCAGCA 62.627 63.158 24.92 0.00 0.00 4.41
776 777 3.479489 TGACTACAGACTGAACCGTGTA 58.521 45.455 10.08 0.00 0.00 2.90
890 903 1.746615 CCAACGAGCCCACCATCTG 60.747 63.158 0.00 0.00 0.00 2.90
926 940 2.656651 CGAGCCGCCTCTTCATCG 60.657 66.667 0.00 0.00 35.90 3.84
927 941 2.496817 GAGCCGCCTCTTCATCGT 59.503 61.111 0.00 0.00 35.16 3.73
928 942 1.590259 GAGCCGCCTCTTCATCGTC 60.590 63.158 0.00 0.00 35.16 4.20
1011 1025 1.112315 CGGGAGAGATGAGGGAGGTG 61.112 65.000 0.00 0.00 0.00 4.00
1118 1132 2.414293 CCTACCTTCTTCGTGACGACAG 60.414 54.545 7.39 8.91 34.89 3.51
1132 1146 0.036010 CGACAGGCACTCAATTCCCT 60.036 55.000 0.00 0.00 34.60 4.20
1397 1411 4.501071 TCTCGAGGTAATTTACTTGTGCC 58.499 43.478 13.56 0.00 0.00 5.01
1409 1423 6.852858 TTTACTTGTGCCCTTAATTTTTGC 57.147 33.333 0.00 0.00 0.00 3.68
1417 1431 2.349275 CCCTTAATTTTTGCATGCGCTG 59.651 45.455 14.09 5.66 39.64 5.18
1704 1756 5.511202 CCCTCATGCATAGTTGGTTGTTTTT 60.511 40.000 0.00 0.00 0.00 1.94
1722 1774 6.420588 TGTTTTTGTGGTCTTTTATACGTCG 58.579 36.000 0.00 0.00 0.00 5.12
1724 1776 7.223582 TGTTTTTGTGGTCTTTTATACGTCGTA 59.776 33.333 7.69 7.69 0.00 3.43
1836 1888 9.177608 CTGAAAGTAACTTTGGATATCCATGAA 57.822 33.333 25.07 15.88 46.97 2.57
1891 1943 4.439305 GCCAAAGCAAGAACATATCACA 57.561 40.909 0.00 0.00 39.53 3.58
1892 1944 5.002464 GCCAAAGCAAGAACATATCACAT 57.998 39.130 0.00 0.00 39.53 3.21
2331 2410 2.281761 AGCCGAACCCAAGCACTG 60.282 61.111 0.00 0.00 0.00 3.66
2402 2481 6.479884 AGTTGAATGCTTAGAGAAGGATGTT 58.520 36.000 0.00 0.00 42.42 2.71
2596 2675 2.787473 TGTGATCACATTCAGGTCCC 57.213 50.000 24.56 0.00 36.21 4.46
2629 2708 8.778059 TCCCCAATAAACTATCAGTGAATACTT 58.222 33.333 0.00 0.00 34.07 2.24
2669 2748 5.285798 TGGTTTATGTTTACTAGCGCAAC 57.714 39.130 11.47 5.24 0.00 4.17
2736 2815 9.683069 GGTCTTGCATTAATCCATAATTAACTG 57.317 33.333 0.00 0.00 41.46 3.16
2788 2867 2.621668 GGAGGGTTTTCCAGCATAGCTT 60.622 50.000 0.00 0.00 42.91 3.74
2790 2869 2.310052 AGGGTTTTCCAGCATAGCTTCT 59.690 45.455 0.00 0.00 42.91 2.85
2844 2923 5.685511 CACAAACACACCTGTATTGCTTTAC 59.314 40.000 4.03 0.00 0.00 2.01
2916 2995 8.701908 ATACCATTACAAGATCTTTGCATGAT 57.298 30.769 4.86 2.84 0.00 2.45
3009 3088 8.540388 AGTCAAAGTATGCTTTTATCCAGACTA 58.460 33.333 17.29 0.00 42.54 2.59
3041 3120 8.896320 TTGTTTCTGTGCTTTATTCTAGTACA 57.104 30.769 0.00 0.00 36.16 2.90
3224 3304 6.073222 ACACTTACTGTCTTAATGAAAAGGCG 60.073 38.462 0.00 0.00 33.68 5.52
3293 3373 9.453572 AAATATCAACTCATTCACTCAGCTTTA 57.546 29.630 0.00 0.00 0.00 1.85
3387 3467 7.548075 GTCCCGAATTACTTGTCTTAGATTTGA 59.452 37.037 0.00 0.00 0.00 2.69
3455 3539 4.217983 GGGATGGAGGTAATACTCAGTACG 59.782 50.000 0.00 0.00 39.27 3.67
3456 3540 4.826183 GGATGGAGGTAATACTCAGTACGT 59.174 45.833 0.00 0.00 39.27 3.57
3457 3541 6.000219 GGATGGAGGTAATACTCAGTACGTA 59.000 44.000 0.00 0.00 39.27 3.57
3458 3542 6.072783 GGATGGAGGTAATACTCAGTACGTAC 60.073 46.154 18.10 18.10 39.27 3.67
3856 5162 4.898861 TGGGTGGCAACTTAATCTTTCTTT 59.101 37.500 0.97 0.00 37.61 2.52
3943 5249 1.002087 ACCCCTGAAATCAGTGACGAC 59.998 52.381 9.43 0.00 42.27 4.34
4003 5309 0.040958 GAGTTCTGCGTGCAGGTTTG 60.041 55.000 20.78 0.00 43.75 2.93
4015 5321 3.288809 GCAGGTTTGCCTAAGACTTTG 57.711 47.619 0.00 0.00 44.97 2.77
4018 5324 4.202111 GCAGGTTTGCCTAAGACTTTGAAA 60.202 41.667 0.00 0.00 44.97 2.69
4038 5352 8.909708 TTGAAATCCATTTAATTCTTACTGCG 57.090 30.769 0.00 0.00 0.00 5.18
4049 5363 0.652592 CTTACTGCGTGCCATGCTAC 59.347 55.000 10.72 0.00 0.00 3.58
4054 5368 1.587088 GCGTGCCATGCTACATTGC 60.587 57.895 0.54 0.00 0.00 3.56
4078 5392 5.982356 TGCTTGAGCTCTTTATGTGTCTAT 58.018 37.500 16.19 0.00 42.66 1.98
4079 5393 7.112452 TGCTTGAGCTCTTTATGTGTCTATA 57.888 36.000 16.19 0.00 42.66 1.31
4105 5419 8.942338 TTGTCACTTACTATTAGCTACATTGG 57.058 34.615 0.00 0.00 0.00 3.16
4297 5615 2.126372 ATTCCCCTCCCGTTCCCA 59.874 61.111 0.00 0.00 0.00 4.37
4350 5668 1.743958 CGAGATCCTCAGTAACCACGT 59.256 52.381 0.00 0.00 0.00 4.49
4429 5747 1.585267 TAAGGTCGAGCAACGCGGTA 61.585 55.000 18.15 0.00 42.26 4.02
4475 5793 2.172483 GAGCCTCCAGAAGTTCGGCA 62.172 60.000 18.20 0.00 43.07 5.69
4576 6080 3.449227 TCGAAGATGGTCCGCGCT 61.449 61.111 5.56 0.00 0.00 5.92
4579 6083 1.716172 GAAGATGGTCCGCGCTTTC 59.284 57.895 5.56 0.00 0.00 2.62
4620 6274 4.514401 ACATCGGATTCTGACTAAAACCC 58.486 43.478 0.00 0.00 0.00 4.11
4627 6281 2.233271 TCTGACTAAAACCCGACTCGT 58.767 47.619 0.00 0.00 0.00 4.18
4628 6282 2.624838 TCTGACTAAAACCCGACTCGTT 59.375 45.455 0.00 0.00 0.00 3.85
4657 6344 2.169561 TGTGTGCGGGACATACATACAT 59.830 45.455 5.42 0.00 44.48 2.29
4658 6345 2.543848 GTGTGCGGGACATACATACATG 59.456 50.000 5.42 0.00 39.98 3.21
4659 6346 1.531149 GTGCGGGACATACATACATGC 59.469 52.381 0.00 0.00 0.00 4.06
4660 6347 1.416030 TGCGGGACATACATACATGCT 59.584 47.619 0.00 0.00 0.00 3.79
4673 6360 0.743701 ACATGCTGTAGAGCTGCTGC 60.744 55.000 13.66 7.62 46.39 5.25
4677 6364 2.984623 TGTAGAGCTGCTGCAGGG 59.015 61.111 29.05 8.16 42.74 4.45
4711 6398 4.092968 GGGCTAAAACTCTTGTGATACGTG 59.907 45.833 0.00 0.00 0.00 4.49
4713 6400 5.389516 GGCTAAAACTCTTGTGATACGTGTG 60.390 44.000 0.00 0.00 0.00 3.82
4737 6424 2.360852 ATGTGGGTGCAGCAGCTC 60.361 61.111 23.44 16.62 42.74 4.09
4738 6425 2.816601 GATGTGGGTGCAGCAGCTCT 62.817 60.000 23.44 6.51 42.74 4.09
4739 6426 3.054503 GTGGGTGCAGCAGCTCTG 61.055 66.667 23.44 8.34 45.62 3.35
4740 6427 4.340246 TGGGTGCAGCAGCTCTGG 62.340 66.667 23.44 0.00 43.06 3.86
4743 6430 4.719106 GTGCAGCAGCTCTGGCCT 62.719 66.667 3.32 0.00 43.06 5.19
4744 6431 4.405671 TGCAGCAGCTCTGGCCTC 62.406 66.667 3.32 0.00 43.06 4.70
4771 6458 7.016563 TGGAATATTCTCATGCATGTACTACCT 59.983 37.037 25.43 7.76 0.00 3.08
4773 6460 7.789202 ATATTCTCATGCATGTACTACCTCT 57.211 36.000 25.43 5.69 0.00 3.69
4774 6461 8.885693 ATATTCTCATGCATGTACTACCTCTA 57.114 34.615 25.43 1.98 0.00 2.43
4775 6462 6.392625 TTCTCATGCATGTACTACCTCTAC 57.607 41.667 25.43 0.00 0.00 2.59
4776 6463 4.827835 TCTCATGCATGTACTACCTCTACC 59.172 45.833 25.43 0.00 0.00 3.18
4795 6482 2.694628 ACCTGCTTTGCAATTGAACTGA 59.305 40.909 10.34 0.00 38.41 3.41
4812 6499 0.528466 TGAAGATGCGATCTGGCGTC 60.528 55.000 6.68 6.68 46.82 5.19
4819 6506 3.917760 GATCTGGCGTCCGAGGGG 61.918 72.222 0.00 0.00 0.00 4.79
4926 6613 2.756760 GTGACATTCTGGCCATGTTGAT 59.243 45.455 5.51 0.00 34.89 2.57
4928 6615 2.360165 GACATTCTGGCCATGTTGATCC 59.640 50.000 5.51 0.00 34.89 3.36
4964 6660 4.858140 TCCGTTTTCTTTTCCGTTGTTTTC 59.142 37.500 0.00 0.00 0.00 2.29
4976 6672 4.516321 TCCGTTGTTTTCTTAAGGTAAGGC 59.484 41.667 1.85 0.00 36.45 4.35
5028 6725 2.316108 GGGTTTGCAGAGAAGGGAAAA 58.684 47.619 0.00 0.00 0.00 2.29
5029 6726 2.035961 GGGTTTGCAGAGAAGGGAAAAC 59.964 50.000 0.00 0.00 33.16 2.43
5050 6747 1.139853 GATGTGGATGGAGACCTGACC 59.860 57.143 0.00 0.00 0.00 4.02
5066 6767 2.139917 TGACCGACCTGTCAAATTTCG 58.860 47.619 0.00 0.00 42.06 3.46
5079 6780 0.541764 AATTTCGGAGGGCTTTGGCA 60.542 50.000 0.00 0.00 40.87 4.92
5083 6784 1.429930 TCGGAGGGCTTTGGCATATA 58.570 50.000 0.00 0.00 40.87 0.86
5084 6785 1.985159 TCGGAGGGCTTTGGCATATAT 59.015 47.619 0.00 0.00 40.87 0.86
5088 6789 2.751806 GAGGGCTTTGGCATATATGAGC 59.248 50.000 17.10 14.87 40.87 4.26
5125 6828 2.821378 TGTTGTGGAGCATGGAATTCAG 59.179 45.455 7.93 0.00 0.00 3.02
5185 6899 0.953960 GCCCGTGAAACCTGGTACTG 60.954 60.000 0.00 0.00 0.00 2.74
5211 6928 2.842208 TGGTTTTCTTGACTTGTGCG 57.158 45.000 0.00 0.00 0.00 5.34
5280 6998 5.198965 GGTCCTTGACACTGGTAGTAGATA 58.801 45.833 0.00 0.00 33.68 1.98
5297 7021 7.096884 AGTAGATATGTCTGCGTACAAGAAA 57.903 36.000 1.62 0.00 41.39 2.52
5303 7027 1.463056 TCTGCGTACAAGAAAATGGCG 59.537 47.619 0.00 0.00 0.00 5.69
5319 7043 4.206958 CGCCTAGCACTTGCATGA 57.793 55.556 6.60 0.00 45.16 3.07
5324 7048 2.033049 GCCTAGCACTTGCATGAATGAG 59.967 50.000 6.60 0.00 45.16 2.90
5329 7053 2.159421 GCACTTGCATGAATGAGTGAGG 60.159 50.000 16.27 0.00 41.59 3.86
5341 7065 2.626785 TGAGTGAGGGAATGGTTGGTA 58.373 47.619 0.00 0.00 0.00 3.25
5425 7150 6.009115 TCGAAAAGAGAAAATAAAGCACCC 57.991 37.500 0.00 0.00 0.00 4.61
5552 7285 1.226686 AATCGATCGCCAGAGCATGC 61.227 55.000 10.51 10.51 39.83 4.06
5571 7304 3.658709 TGCACGTACATCAGTTCATCAA 58.341 40.909 0.00 0.00 0.00 2.57
5572 7305 4.061596 TGCACGTACATCAGTTCATCAAA 58.938 39.130 0.00 0.00 0.00 2.69
5573 7306 4.152223 TGCACGTACATCAGTTCATCAAAG 59.848 41.667 0.00 0.00 0.00 2.77
5574 7307 4.388773 GCACGTACATCAGTTCATCAAAGA 59.611 41.667 0.00 0.00 0.00 2.52
5575 7308 5.445142 GCACGTACATCAGTTCATCAAAGAG 60.445 44.000 0.00 0.00 0.00 2.85
5576 7309 5.863935 CACGTACATCAGTTCATCAAAGAGA 59.136 40.000 0.00 0.00 0.00 3.10
5577 7310 6.366061 CACGTACATCAGTTCATCAAAGAGAA 59.634 38.462 0.00 0.00 0.00 2.87
5578 7311 6.929049 ACGTACATCAGTTCATCAAAGAGAAA 59.071 34.615 0.00 0.00 0.00 2.52
5579 7312 7.116948 ACGTACATCAGTTCATCAAAGAGAAAG 59.883 37.037 0.00 0.00 0.00 2.62
5606 7339 0.657840 GGAGCCGGTGAATGAATTCG 59.342 55.000 1.90 0.00 39.62 3.34
5615 7348 1.772063 GAATGAATTCGGCCCGACGG 61.772 60.000 4.70 6.99 34.89 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 1.465200 TTGGGTTTTTAGCACCGGGC 61.465 55.000 6.32 6.61 45.30 6.13
18 19 0.601057 CTTGGGTTTTTAGCACCGGG 59.399 55.000 6.32 0.00 34.79 5.73
19 20 1.324383 ACTTGGGTTTTTAGCACCGG 58.676 50.000 0.00 0.00 34.79 5.28
20 21 2.603652 CGAACTTGGGTTTTTAGCACCG 60.604 50.000 0.00 0.00 35.58 4.94
21 22 2.619646 TCGAACTTGGGTTTTTAGCACC 59.380 45.455 0.00 0.00 35.58 5.01
22 23 3.852205 GCTCGAACTTGGGTTTTTAGCAC 60.852 47.826 0.00 0.00 36.10 4.40
23 24 2.292292 GCTCGAACTTGGGTTTTTAGCA 59.708 45.455 0.00 0.00 36.10 3.49
24 25 2.351447 GGCTCGAACTTGGGTTTTTAGC 60.351 50.000 0.00 0.00 35.58 3.09
25 26 2.228103 GGGCTCGAACTTGGGTTTTTAG 59.772 50.000 0.00 0.00 35.58 1.85
26 27 2.232399 GGGCTCGAACTTGGGTTTTTA 58.768 47.619 0.00 0.00 35.58 1.52
27 28 1.037493 GGGCTCGAACTTGGGTTTTT 58.963 50.000 0.00 0.00 35.58 1.94
28 29 1.170290 CGGGCTCGAACTTGGGTTTT 61.170 55.000 0.00 0.00 39.00 2.43
29 30 1.599797 CGGGCTCGAACTTGGGTTT 60.600 57.895 0.00 0.00 39.00 3.27
30 31 2.032071 CGGGCTCGAACTTGGGTT 59.968 61.111 0.00 0.00 39.00 4.11
31 32 2.920912 TCGGGCTCGAACTTGGGT 60.921 61.111 6.00 0.00 43.03 4.51
45 46 3.075005 ATGGTCGGGTCAGGTCGG 61.075 66.667 0.00 0.00 0.00 4.79
46 47 2.494918 GATGGTCGGGTCAGGTCG 59.505 66.667 0.00 0.00 0.00 4.79
47 48 2.494918 CGATGGTCGGGTCAGGTC 59.505 66.667 0.00 0.00 36.00 3.85
56 57 0.391927 TTTTGTAGGCCCGATGGTCG 60.392 55.000 0.00 0.00 42.85 4.79
57 58 1.947456 GATTTTGTAGGCCCGATGGTC 59.053 52.381 0.00 0.00 36.05 4.02
58 59 1.745827 CGATTTTGTAGGCCCGATGGT 60.746 52.381 0.00 0.00 0.00 3.55
59 60 0.944386 CGATTTTGTAGGCCCGATGG 59.056 55.000 0.00 0.00 0.00 3.51
60 61 0.944386 CCGATTTTGTAGGCCCGATG 59.056 55.000 0.00 0.00 0.00 3.84
61 62 0.179029 CCCGATTTTGTAGGCCCGAT 60.179 55.000 0.00 0.00 0.00 4.18
62 63 1.222387 CCCGATTTTGTAGGCCCGA 59.778 57.895 0.00 0.00 0.00 5.14
63 64 2.478033 GCCCGATTTTGTAGGCCCG 61.478 63.158 0.00 0.00 39.60 6.13
64 65 3.521605 GCCCGATTTTGTAGGCCC 58.478 61.111 0.00 0.00 39.60 5.80
66 67 2.478033 CGGGCCCGATTTTGTAGGC 61.478 63.158 41.82 0.00 44.99 3.93
67 68 1.222387 TCGGGCCCGATTTTGTAGG 59.778 57.895 42.66 11.59 44.01 3.18
68 69 4.946038 TCGGGCCCGATTTTGTAG 57.054 55.556 42.66 12.44 44.01 2.74
80 81 2.821810 GCTTTCTCAGGCTCGGGC 60.822 66.667 0.00 0.00 37.82 6.13
81 82 2.124942 GGCTTTCTCAGGCTCGGG 60.125 66.667 0.00 0.00 45.03 5.14
87 88 1.738099 CGTGTCGGGCTTTCTCAGG 60.738 63.158 0.00 0.00 0.00 3.86
88 89 1.738099 CCGTGTCGGGCTTTCTCAG 60.738 63.158 0.00 0.00 44.15 3.35
89 90 2.342279 CCGTGTCGGGCTTTCTCA 59.658 61.111 0.00 0.00 44.15 3.27
115 116 4.509737 GTCGTAGTCGGGCCAGGC 62.510 72.222 4.39 1.26 37.69 4.85
116 117 1.033746 TAAGTCGTAGTCGGGCCAGG 61.034 60.000 4.39 0.00 37.69 4.45
117 118 0.813184 TTAAGTCGTAGTCGGGCCAG 59.187 55.000 4.39 0.00 37.69 4.85
118 119 1.255882 TTTAAGTCGTAGTCGGGCCA 58.744 50.000 4.39 0.00 37.69 5.36
119 120 1.995484 GTTTTAAGTCGTAGTCGGGCC 59.005 52.381 0.00 0.00 37.69 5.80
120 121 2.409715 GTGTTTTAAGTCGTAGTCGGGC 59.590 50.000 0.00 0.00 37.69 6.13
121 122 2.658325 CGTGTTTTAAGTCGTAGTCGGG 59.342 50.000 0.00 0.00 37.69 5.14
122 123 3.300009 ACGTGTTTTAAGTCGTAGTCGG 58.700 45.455 0.00 0.00 37.69 4.79
123 124 4.936396 AACGTGTTTTAAGTCGTAGTCG 57.064 40.909 0.00 0.00 35.49 4.18
124 125 6.406042 CACAAAACGTGTTTTAAGTCGTAGTC 59.594 38.462 10.14 0.00 40.45 2.59
125 126 6.242829 CACAAAACGTGTTTTAAGTCGTAGT 58.757 36.000 10.14 0.18 40.45 2.73
126 127 6.691193 CACAAAACGTGTTTTAAGTCGTAG 57.309 37.500 10.14 0.00 40.45 3.51
140 141 3.591835 CGGGCCTGCACAAAACGT 61.592 61.111 0.84 0.00 0.00 3.99
141 142 3.254014 CTCGGGCCTGCACAAAACG 62.254 63.158 6.73 0.00 0.00 3.60
142 143 2.644992 CTCGGGCCTGCACAAAAC 59.355 61.111 6.73 0.00 0.00 2.43
143 144 3.294493 GCTCGGGCCTGCACAAAA 61.294 61.111 6.73 0.00 0.00 2.44
167 168 4.457496 AGCCCGAGTGTGCCATCG 62.457 66.667 0.00 0.00 38.65 3.84
168 169 2.512515 GAGCCCGAGTGTGCCATC 60.513 66.667 0.00 0.00 0.00 3.51
169 170 3.320879 CTGAGCCCGAGTGTGCCAT 62.321 63.158 0.00 0.00 0.00 4.40
170 171 4.007644 CTGAGCCCGAGTGTGCCA 62.008 66.667 0.00 0.00 0.00 4.92
182 183 2.615227 AATCATGGGTCGGGCTGAGC 62.615 60.000 17.05 17.05 44.49 4.26
183 184 0.107017 AAATCATGGGTCGGGCTGAG 60.107 55.000 0.00 0.00 0.00 3.35
184 185 0.331278 AAAATCATGGGTCGGGCTGA 59.669 50.000 0.00 0.00 0.00 4.26
185 186 0.740737 GAAAATCATGGGTCGGGCTG 59.259 55.000 0.00 0.00 0.00 4.85
186 187 0.748005 CGAAAATCATGGGTCGGGCT 60.748 55.000 0.00 0.00 0.00 5.19
187 188 1.727467 CGAAAATCATGGGTCGGGC 59.273 57.895 0.00 0.00 0.00 6.13
190 191 1.724582 GGCCCGAAAATCATGGGTCG 61.725 60.000 0.00 0.00 45.19 4.79
191 192 2.115510 GGCCCGAAAATCATGGGTC 58.884 57.895 0.00 0.00 45.19 4.46
192 193 0.032217 ATGGCCCGAAAATCATGGGT 60.032 50.000 0.00 0.00 45.19 4.51
193 194 0.675633 GATGGCCCGAAAATCATGGG 59.324 55.000 0.00 0.00 46.22 4.00
194 195 1.338973 CAGATGGCCCGAAAATCATGG 59.661 52.381 0.00 0.00 0.00 3.66
195 196 1.338973 CCAGATGGCCCGAAAATCATG 59.661 52.381 0.00 0.00 0.00 3.07
196 197 1.696063 CCAGATGGCCCGAAAATCAT 58.304 50.000 0.00 0.00 0.00 2.45
197 198 0.395586 CCCAGATGGCCCGAAAATCA 60.396 55.000 0.00 0.00 0.00 2.57
198 199 0.395724 ACCCAGATGGCCCGAAAATC 60.396 55.000 0.00 0.00 37.83 2.17
199 200 0.395724 GACCCAGATGGCCCGAAAAT 60.396 55.000 0.00 0.00 37.83 1.82
200 201 1.001393 GACCCAGATGGCCCGAAAA 60.001 57.895 0.00 0.00 37.83 2.29
201 202 2.674754 GACCCAGATGGCCCGAAA 59.325 61.111 0.00 0.00 37.83 3.46
202 203 3.781307 CGACCCAGATGGCCCGAA 61.781 66.667 0.00 0.00 37.83 4.30
207 208 4.864334 CAGCCCGACCCAGATGGC 62.864 72.222 0.00 0.00 44.35 4.40
208 209 4.864334 GCAGCCCGACCCAGATGG 62.864 72.222 0.00 0.00 41.37 3.51
209 210 4.864334 GGCAGCCCGACCCAGATG 62.864 72.222 0.00 0.00 0.00 2.90
222 223 4.453925 GGTTAGACCTAGCCATGGGCAG 62.454 59.091 15.13 5.06 42.95 4.85
223 224 2.592571 GGTTAGACCTAGCCATGGGCA 61.593 57.143 15.13 0.00 42.95 5.36
224 225 0.108774 GGTTAGACCTAGCCATGGGC 59.891 60.000 15.13 5.94 41.65 5.36
225 226 0.393077 CGGTTAGACCTAGCCATGGG 59.607 60.000 15.13 0.00 36.37 4.00
226 227 1.120530 ACGGTTAGACCTAGCCATGG 58.879 55.000 7.63 7.63 36.37 3.66
227 228 1.806623 GCACGGTTAGACCTAGCCATG 60.807 57.143 9.96 6.26 36.37 3.66
228 229 0.464452 GCACGGTTAGACCTAGCCAT 59.536 55.000 9.96 0.00 36.37 4.40
229 230 1.895238 GCACGGTTAGACCTAGCCA 59.105 57.895 9.96 0.00 36.37 4.75
230 231 1.143401 GGCACGGTTAGACCTAGCC 59.857 63.158 11.97 11.97 44.53 3.93
231 232 0.102663 GAGGCACGGTTAGACCTAGC 59.897 60.000 0.00 0.00 35.66 3.42
232 233 1.677052 GAGAGGCACGGTTAGACCTAG 59.323 57.143 0.00 0.00 35.66 3.02
233 234 1.760192 GAGAGGCACGGTTAGACCTA 58.240 55.000 0.00 0.00 35.66 3.08
234 235 1.313812 CGAGAGGCACGGTTAGACCT 61.314 60.000 0.00 0.00 35.66 3.85
235 236 1.139095 CGAGAGGCACGGTTAGACC 59.861 63.158 0.00 0.00 34.05 3.85
236 237 1.516603 GCGAGAGGCACGGTTAGAC 60.517 63.158 0.00 0.00 42.87 2.59
237 238 2.882876 GCGAGAGGCACGGTTAGA 59.117 61.111 0.00 0.00 42.87 2.10
238 239 2.579787 CGCGAGAGGCACGGTTAG 60.580 66.667 0.00 0.00 43.84 2.34
239 240 4.124351 CCGCGAGAGGCACGGTTA 62.124 66.667 8.23 0.00 43.84 2.85
247 248 1.497722 GTTTTGCTTCCGCGAGAGG 59.502 57.895 8.23 4.88 39.65 3.69
248 249 1.497722 GGTTTTGCTTCCGCGAGAG 59.502 57.895 8.23 5.93 39.65 3.20
249 250 2.314647 CGGTTTTGCTTCCGCGAGA 61.315 57.895 8.23 0.00 40.28 4.04
250 251 2.173382 CGGTTTTGCTTCCGCGAG 59.827 61.111 8.23 0.00 40.28 5.03
255 256 1.172812 AGAGGCACGGTTTTGCTTCC 61.173 55.000 4.54 0.00 46.96 3.46
256 257 0.238553 GAGAGGCACGGTTTTGCTTC 59.761 55.000 0.28 0.28 46.31 3.86
257 258 1.507141 CGAGAGGCACGGTTTTGCTT 61.507 55.000 0.00 0.00 42.56 3.91
258 259 1.961277 CGAGAGGCACGGTTTTGCT 60.961 57.895 0.00 0.00 42.56 3.91
259 260 2.251642 ACGAGAGGCACGGTTTTGC 61.252 57.895 0.00 0.00 42.18 3.68
260 261 0.878523 TCACGAGAGGCACGGTTTTG 60.879 55.000 0.00 0.00 34.93 2.44
261 262 0.179067 TTCACGAGAGGCACGGTTTT 60.179 50.000 0.00 0.00 34.93 2.43
262 263 0.179067 TTTCACGAGAGGCACGGTTT 60.179 50.000 0.00 0.00 34.93 3.27
263 264 0.600255 CTTTCACGAGAGGCACGGTT 60.600 55.000 0.00 0.00 34.93 4.44
264 265 1.006102 CTTTCACGAGAGGCACGGT 60.006 57.895 0.00 0.00 34.93 4.83
265 266 0.319555 TTCTTTCACGAGAGGCACGG 60.320 55.000 0.00 0.00 34.93 4.94
266 267 1.497991 TTTCTTTCACGAGAGGCACG 58.502 50.000 0.00 0.00 0.00 5.34
267 268 3.963383 TTTTTCTTTCACGAGAGGCAC 57.037 42.857 0.00 0.00 0.00 5.01
288 289 7.567952 CGGAAAAGAAAAACGTGTTTCTGTTTT 60.568 33.333 29.11 25.55 45.09 2.43
289 290 6.129035 CGGAAAAGAAAAACGTGTTTCTGTTT 60.129 34.615 29.11 26.82 45.09 2.83
290 291 5.343860 CGGAAAAGAAAAACGTGTTTCTGTT 59.656 36.000 28.97 28.97 45.09 3.16
291 292 4.854839 CGGAAAAGAAAAACGTGTTTCTGT 59.145 37.500 29.67 23.49 45.09 3.41
292 293 4.854839 ACGGAAAAGAAAAACGTGTTTCTG 59.145 37.500 29.67 20.11 45.09 3.02
294 295 5.750484 AACGGAAAAGAAAAACGTGTTTC 57.250 34.783 21.34 21.34 37.87 2.78
295 296 5.118971 GGAAACGGAAAAGAAAAACGTGTTT 59.881 36.000 2.60 2.60 37.87 2.83
296 297 4.622313 GGAAACGGAAAAGAAAAACGTGTT 59.378 37.500 0.00 0.00 37.87 3.32
297 298 4.168014 GGAAACGGAAAAGAAAAACGTGT 58.832 39.130 0.00 0.00 37.87 4.49
298 299 4.748503 GGAAACGGAAAAGAAAAACGTG 57.251 40.909 0.00 0.00 37.87 4.49
329 330 3.909258 TTTCGCGAGAGTCACGGCC 62.909 63.158 9.59 0.00 43.69 6.13
330 331 1.554042 TTTTTCGCGAGAGTCACGGC 61.554 55.000 9.59 3.61 43.69 5.68
331 332 2.513159 TTTTTCGCGAGAGTCACGG 58.487 52.632 9.59 2.55 43.69 4.94
374 375 9.074576 GGTCTTCCTTAACTTTTGGATAGAAAA 57.925 33.333 0.00 0.00 0.00 2.29
375 376 7.389607 CGGTCTTCCTTAACTTTTGGATAGAAA 59.610 37.037 0.00 0.00 0.00 2.52
376 377 6.877322 CGGTCTTCCTTAACTTTTGGATAGAA 59.123 38.462 0.00 0.00 0.00 2.10
377 378 6.211986 TCGGTCTTCCTTAACTTTTGGATAGA 59.788 38.462 0.00 0.00 0.00 1.98
378 379 6.403878 TCGGTCTTCCTTAACTTTTGGATAG 58.596 40.000 0.00 0.00 0.00 2.08
379 380 6.363167 TCGGTCTTCCTTAACTTTTGGATA 57.637 37.500 0.00 0.00 0.00 2.59
380 381 5.237236 TCGGTCTTCCTTAACTTTTGGAT 57.763 39.130 0.00 0.00 0.00 3.41
381 382 4.693042 TCGGTCTTCCTTAACTTTTGGA 57.307 40.909 0.00 0.00 0.00 3.53
382 383 4.156008 CCATCGGTCTTCCTTAACTTTTGG 59.844 45.833 0.00 0.00 0.00 3.28
383 384 5.001232 TCCATCGGTCTTCCTTAACTTTTG 58.999 41.667 0.00 0.00 0.00 2.44
384 385 5.237236 TCCATCGGTCTTCCTTAACTTTT 57.763 39.130 0.00 0.00 0.00 2.27
385 386 4.903045 TCCATCGGTCTTCCTTAACTTT 57.097 40.909 0.00 0.00 0.00 2.66
386 387 4.903045 TTCCATCGGTCTTCCTTAACTT 57.097 40.909 0.00 0.00 0.00 2.66
387 388 4.903045 TTTCCATCGGTCTTCCTTAACT 57.097 40.909 0.00 0.00 0.00 2.24
388 389 5.220605 CGATTTTCCATCGGTCTTCCTTAAC 60.221 44.000 0.00 0.00 37.84 2.01
389 390 4.873827 CGATTTTCCATCGGTCTTCCTTAA 59.126 41.667 0.00 0.00 37.84 1.85
390 391 4.160814 TCGATTTTCCATCGGTCTTCCTTA 59.839 41.667 4.50 0.00 41.45 2.69
391 392 3.055385 TCGATTTTCCATCGGTCTTCCTT 60.055 43.478 4.50 0.00 41.45 3.36
392 393 2.500098 TCGATTTTCCATCGGTCTTCCT 59.500 45.455 4.50 0.00 41.45 3.36
393 394 2.901249 TCGATTTTCCATCGGTCTTCC 58.099 47.619 4.50 0.00 41.45 3.46
394 395 4.153475 TGTTTCGATTTTCCATCGGTCTTC 59.847 41.667 4.50 0.00 41.45 2.87
395 396 4.069304 TGTTTCGATTTTCCATCGGTCTT 58.931 39.130 4.50 0.00 41.45 3.01
396 397 3.435671 GTGTTTCGATTTTCCATCGGTCT 59.564 43.478 4.50 0.00 41.45 3.85
397 398 3.425758 GGTGTTTCGATTTTCCATCGGTC 60.426 47.826 4.50 0.00 41.45 4.79
398 399 2.486592 GGTGTTTCGATTTTCCATCGGT 59.513 45.455 4.50 0.00 41.45 4.69
399 400 2.486203 TGGTGTTTCGATTTTCCATCGG 59.514 45.455 4.50 0.00 41.45 4.18
400 401 3.822594 TGGTGTTTCGATTTTCCATCG 57.177 42.857 0.00 0.00 42.38 3.84
401 402 6.836577 TTTTTGGTGTTTCGATTTTCCATC 57.163 33.333 0.00 0.00 0.00 3.51
432 433 5.220322 CGCTTTTGGCTTTTAGAACGTTTTT 60.220 36.000 0.46 0.00 39.13 1.94
433 434 4.266739 CGCTTTTGGCTTTTAGAACGTTTT 59.733 37.500 0.46 0.00 39.13 2.43
434 435 3.794564 CGCTTTTGGCTTTTAGAACGTTT 59.205 39.130 0.46 0.00 39.13 3.60
435 436 3.181494 ACGCTTTTGGCTTTTAGAACGTT 60.181 39.130 0.00 0.00 39.13 3.99
436 437 2.356695 ACGCTTTTGGCTTTTAGAACGT 59.643 40.909 0.00 0.00 39.13 3.99
437 438 2.719046 CACGCTTTTGGCTTTTAGAACG 59.281 45.455 0.00 0.00 39.13 3.95
438 439 3.485743 CACACGCTTTTGGCTTTTAGAAC 59.514 43.478 0.00 0.00 39.13 3.01
439 440 3.378742 TCACACGCTTTTGGCTTTTAGAA 59.621 39.130 0.00 0.00 39.13 2.10
440 441 2.946329 TCACACGCTTTTGGCTTTTAGA 59.054 40.909 0.00 0.00 39.13 2.10
441 442 3.347958 TCACACGCTTTTGGCTTTTAG 57.652 42.857 0.00 0.00 39.13 1.85
442 443 3.784701 TTCACACGCTTTTGGCTTTTA 57.215 38.095 0.00 0.00 39.13 1.52
443 444 2.663826 TTCACACGCTTTTGGCTTTT 57.336 40.000 0.00 0.00 39.13 2.27
444 445 2.663826 TTTCACACGCTTTTGGCTTT 57.336 40.000 0.00 0.00 39.13 3.51
445 446 2.663826 TTTTCACACGCTTTTGGCTT 57.336 40.000 0.00 0.00 39.13 4.35
446 447 2.663826 TTTTTCACACGCTTTTGGCT 57.336 40.000 0.00 0.00 39.13 4.75
471 472 8.865978 GCGTTTCCTTCGGATTTTATTTTTATT 58.134 29.630 0.00 0.00 0.00 1.40
472 473 7.490079 GGCGTTTCCTTCGGATTTTATTTTTAT 59.510 33.333 0.00 0.00 0.00 1.40
473 474 6.807720 GGCGTTTCCTTCGGATTTTATTTTTA 59.192 34.615 0.00 0.00 0.00 1.52
474 475 5.636121 GGCGTTTCCTTCGGATTTTATTTTT 59.364 36.000 0.00 0.00 0.00 1.94
475 476 5.165676 GGCGTTTCCTTCGGATTTTATTTT 58.834 37.500 0.00 0.00 0.00 1.82
476 477 4.381185 GGGCGTTTCCTTCGGATTTTATTT 60.381 41.667 0.00 0.00 34.39 1.40
477 478 3.129813 GGGCGTTTCCTTCGGATTTTATT 59.870 43.478 0.00 0.00 34.39 1.40
478 479 2.686405 GGGCGTTTCCTTCGGATTTTAT 59.314 45.455 0.00 0.00 34.39 1.40
479 480 2.086094 GGGCGTTTCCTTCGGATTTTA 58.914 47.619 0.00 0.00 34.39 1.52
480 481 0.885879 GGGCGTTTCCTTCGGATTTT 59.114 50.000 0.00 0.00 34.39 1.82
481 482 0.250989 TGGGCGTTTCCTTCGGATTT 60.251 50.000 0.00 0.00 34.39 2.17
482 483 0.676782 CTGGGCGTTTCCTTCGGATT 60.677 55.000 0.00 0.00 34.39 3.01
483 484 1.078426 CTGGGCGTTTCCTTCGGAT 60.078 57.895 0.00 0.00 34.39 4.18
484 485 2.167398 CTCTGGGCGTTTCCTTCGGA 62.167 60.000 0.00 0.00 34.39 4.55
485 486 1.741770 CTCTGGGCGTTTCCTTCGG 60.742 63.158 0.00 0.00 34.39 4.30
486 487 2.391389 GCTCTGGGCGTTTCCTTCG 61.391 63.158 0.00 0.00 34.39 3.79
487 488 1.302511 TGCTCTGGGCGTTTCCTTC 60.303 57.895 0.00 0.00 45.43 3.46
488 489 1.600916 GTGCTCTGGGCGTTTCCTT 60.601 57.895 0.00 0.00 45.43 3.36
489 490 2.032681 GTGCTCTGGGCGTTTCCT 59.967 61.111 0.00 0.00 45.43 3.36
490 491 3.423154 CGTGCTCTGGGCGTTTCC 61.423 66.667 0.00 0.00 45.43 3.13
491 492 2.357034 TCGTGCTCTGGGCGTTTC 60.357 61.111 0.00 0.00 45.43 2.78
492 493 2.665185 GTCGTGCTCTGGGCGTTT 60.665 61.111 0.00 0.00 45.43 3.60
493 494 3.240134 ATGTCGTGCTCTGGGCGTT 62.240 57.895 0.00 0.00 45.43 4.84
494 495 3.695606 ATGTCGTGCTCTGGGCGT 61.696 61.111 0.00 0.00 45.43 5.68
495 496 3.190849 CATGTCGTGCTCTGGGCG 61.191 66.667 0.00 0.00 45.43 6.13
496 497 2.046892 ACATGTCGTGCTCTGGGC 60.047 61.111 0.00 0.00 42.22 5.36
497 498 0.107993 ATCACATGTCGTGCTCTGGG 60.108 55.000 0.00 0.00 45.92 4.45
498 499 1.004595 CATCACATGTCGTGCTCTGG 58.995 55.000 0.00 0.00 45.92 3.86
499 500 1.004595 CCATCACATGTCGTGCTCTG 58.995 55.000 0.00 0.00 45.92 3.35
500 501 0.897621 TCCATCACATGTCGTGCTCT 59.102 50.000 0.00 0.00 45.92 4.09
501 502 1.002366 GTCCATCACATGTCGTGCTC 58.998 55.000 0.00 0.00 45.92 4.26
502 503 0.737367 CGTCCATCACATGTCGTGCT 60.737 55.000 0.00 0.00 45.92 4.40
503 504 1.695893 CCGTCCATCACATGTCGTGC 61.696 60.000 0.00 0.00 45.92 5.34
505 506 1.447838 GCCGTCCATCACATGTCGT 60.448 57.895 0.00 0.00 0.00 4.34
506 507 0.102300 TAGCCGTCCATCACATGTCG 59.898 55.000 0.00 0.00 0.00 4.35
507 508 2.309528 TTAGCCGTCCATCACATGTC 57.690 50.000 0.00 0.00 0.00 3.06
508 509 2.779755 TTTAGCCGTCCATCACATGT 57.220 45.000 0.00 0.00 0.00 3.21
509 510 3.190327 TGTTTTTAGCCGTCCATCACATG 59.810 43.478 0.00 0.00 0.00 3.21
510 511 3.190535 GTGTTTTTAGCCGTCCATCACAT 59.809 43.478 0.00 0.00 0.00 3.21
511 512 2.550606 GTGTTTTTAGCCGTCCATCACA 59.449 45.455 0.00 0.00 0.00 3.58
512 513 2.412325 CGTGTTTTTAGCCGTCCATCAC 60.412 50.000 0.00 0.00 0.00 3.06
513 514 1.801771 CGTGTTTTTAGCCGTCCATCA 59.198 47.619 0.00 0.00 0.00 3.07
514 515 1.465187 GCGTGTTTTTAGCCGTCCATC 60.465 52.381 0.00 0.00 0.00 3.51
515 516 0.519961 GCGTGTTTTTAGCCGTCCAT 59.480 50.000 0.00 0.00 0.00 3.41
516 517 1.508808 GGCGTGTTTTTAGCCGTCCA 61.509 55.000 0.00 0.00 41.53 4.02
517 518 1.208358 GGCGTGTTTTTAGCCGTCC 59.792 57.895 0.00 0.00 41.53 4.79
518 519 4.832767 GGCGTGTTTTTAGCCGTC 57.167 55.556 0.00 0.00 41.53 4.79
522 523 2.381589 GTCACTTGGCGTGTTTTTAGC 58.618 47.619 0.00 0.00 44.16 3.09
523 524 2.635444 CGTCACTTGGCGTGTTTTTAG 58.365 47.619 0.00 0.00 44.16 1.85
524 525 2.741122 CGTCACTTGGCGTGTTTTTA 57.259 45.000 0.00 0.00 44.16 1.52
525 526 3.615099 CGTCACTTGGCGTGTTTTT 57.385 47.368 0.00 0.00 44.16 1.94
533 534 2.774439 AACAATCAACGTCACTTGGC 57.226 45.000 0.00 0.00 0.00 4.52
534 535 5.390885 CCTCATAACAATCAACGTCACTTGG 60.391 44.000 0.00 0.00 0.00 3.61
535 536 5.179368 ACCTCATAACAATCAACGTCACTTG 59.821 40.000 0.00 0.00 0.00 3.16
536 537 5.305585 ACCTCATAACAATCAACGTCACTT 58.694 37.500 0.00 0.00 0.00 3.16
537 538 4.894784 ACCTCATAACAATCAACGTCACT 58.105 39.130 0.00 0.00 0.00 3.41
538 539 4.092968 GGACCTCATAACAATCAACGTCAC 59.907 45.833 0.00 0.00 0.00 3.67
539 540 4.250464 GGACCTCATAACAATCAACGTCA 58.750 43.478 0.00 0.00 0.00 4.35
540 541 3.621715 GGGACCTCATAACAATCAACGTC 59.378 47.826 0.00 0.00 0.00 4.34
541 542 3.606687 GGGACCTCATAACAATCAACGT 58.393 45.455 0.00 0.00 0.00 3.99
558 559 2.509561 GAGCGCTTCTTCGGGGAC 60.510 66.667 13.26 0.00 0.00 4.46
559 560 4.129737 CGAGCGCTTCTTCGGGGA 62.130 66.667 13.26 0.00 0.00 4.81
560 561 4.436998 ACGAGCGCTTCTTCGGGG 62.437 66.667 13.26 0.00 0.00 5.73
561 562 2.881352 GACGAGCGCTTCTTCGGG 60.881 66.667 13.26 0.00 0.00 5.14
562 563 1.733041 TTGACGAGCGCTTCTTCGG 60.733 57.895 13.26 0.00 0.00 4.30
563 564 1.004277 AGTTGACGAGCGCTTCTTCG 61.004 55.000 13.26 13.91 0.00 3.79
564 565 1.914700 CTAGTTGACGAGCGCTTCTTC 59.085 52.381 13.26 9.22 0.00 2.87
565 566 1.269998 ACTAGTTGACGAGCGCTTCTT 59.730 47.619 13.26 0.00 0.00 2.52
566 567 0.882474 ACTAGTTGACGAGCGCTTCT 59.118 50.000 13.26 0.00 0.00 2.85
567 568 1.387084 CAACTAGTTGACGAGCGCTTC 59.613 52.381 28.17 6.79 42.93 3.86
568 569 1.419374 CAACTAGTTGACGAGCGCTT 58.581 50.000 28.17 0.00 42.93 4.68
569 570 1.009389 GCAACTAGTTGACGAGCGCT 61.009 55.000 34.43 11.27 42.93 5.92
570 571 1.009389 AGCAACTAGTTGACGAGCGC 61.009 55.000 34.43 19.34 42.93 5.92
571 572 0.985549 GAGCAACTAGTTGACGAGCG 59.014 55.000 34.43 10.73 42.93 5.03
572 573 2.094957 AGAGAGCAACTAGTTGACGAGC 60.095 50.000 34.43 20.67 42.93 5.03
573 574 3.426963 GGAGAGAGCAACTAGTTGACGAG 60.427 52.174 34.43 12.13 42.93 4.18
574 575 2.488545 GGAGAGAGCAACTAGTTGACGA 59.511 50.000 34.43 0.00 42.93 4.20
575 576 2.490115 AGGAGAGAGCAACTAGTTGACG 59.510 50.000 34.43 12.85 42.93 4.35
576 577 5.845391 ATAGGAGAGAGCAACTAGTTGAC 57.155 43.478 34.43 25.73 42.93 3.18
577 578 6.065374 CCTATAGGAGAGAGCAACTAGTTGA 58.935 44.000 34.43 13.96 39.10 3.18
578 579 6.016610 GTCCTATAGGAGAGAGCAACTAGTTG 60.017 46.154 27.85 27.85 46.49 3.16
579 580 6.066032 GTCCTATAGGAGAGAGCAACTAGTT 58.934 44.000 22.30 1.12 46.49 2.24
580 581 5.457052 GGTCCTATAGGAGAGAGCAACTAGT 60.457 48.000 22.30 0.00 46.49 2.57
581 582 5.007682 GGTCCTATAGGAGAGAGCAACTAG 58.992 50.000 22.30 0.00 46.49 2.57
582 583 4.665957 AGGTCCTATAGGAGAGAGCAACTA 59.334 45.833 22.30 0.00 46.49 2.24
583 584 3.465588 AGGTCCTATAGGAGAGAGCAACT 59.534 47.826 22.30 3.85 46.49 3.16
584 585 3.824443 GAGGTCCTATAGGAGAGAGCAAC 59.176 52.174 22.30 8.00 46.49 4.17
585 586 3.181427 GGAGGTCCTATAGGAGAGAGCAA 60.181 52.174 22.30 0.00 46.49 3.91
586 587 2.377193 GGAGGTCCTATAGGAGAGAGCA 59.623 54.545 22.30 0.00 46.49 4.26
587 588 2.291346 GGGAGGTCCTATAGGAGAGAGC 60.291 59.091 22.30 10.30 46.49 4.09
588 589 3.265489 AGGGAGGTCCTATAGGAGAGAG 58.735 54.545 22.30 0.00 46.49 3.20
589 590 3.387105 AGGGAGGTCCTATAGGAGAGA 57.613 52.381 22.30 0.00 46.49 3.10
600 601 1.672320 GCGCCTTATAGGGAGGTCC 59.328 63.158 4.79 0.00 35.37 4.46
601 602 1.119574 TGGCGCCTTATAGGGAGGTC 61.120 60.000 29.70 0.00 35.37 3.85
602 603 0.473886 ATGGCGCCTTATAGGGAGGT 60.474 55.000 29.70 0.00 35.37 3.85
603 604 0.693049 AATGGCGCCTTATAGGGAGG 59.307 55.000 29.70 0.00 35.37 4.30
604 605 2.568623 AAATGGCGCCTTATAGGGAG 57.431 50.000 29.70 2.19 35.37 4.30
605 606 2.304761 CCTAAATGGCGCCTTATAGGGA 59.695 50.000 29.25 11.69 35.37 4.20
606 607 2.304761 TCCTAAATGGCGCCTTATAGGG 59.695 50.000 32.66 24.87 33.65 3.53
607 608 3.695830 TCCTAAATGGCGCCTTATAGG 57.304 47.619 30.23 30.23 35.32 2.57
608 609 5.619981 GCAATTCCTAAATGGCGCCTTATAG 60.620 44.000 29.70 23.45 32.25 1.31
609 610 4.217550 GCAATTCCTAAATGGCGCCTTATA 59.782 41.667 29.70 15.89 32.25 0.98
610 611 3.005791 GCAATTCCTAAATGGCGCCTTAT 59.994 43.478 29.70 11.29 32.25 1.73
611 612 2.360801 GCAATTCCTAAATGGCGCCTTA 59.639 45.455 29.70 17.62 32.25 2.69
612 613 1.136891 GCAATTCCTAAATGGCGCCTT 59.863 47.619 29.70 19.97 32.25 4.35
613 614 0.746659 GCAATTCCTAAATGGCGCCT 59.253 50.000 29.70 10.43 32.25 5.52
614 615 0.249447 GGCAATTCCTAAATGGCGCC 60.249 55.000 22.73 22.73 41.98 6.53
615 616 0.746659 AGGCAATTCCTAAATGGCGC 59.253 50.000 0.00 0.00 45.41 6.53
616 617 1.536709 GCAGGCAATTCCTAAATGGCG 60.537 52.381 0.00 0.00 45.52 5.69
617 618 1.202568 GGCAGGCAATTCCTAAATGGC 60.203 52.381 0.00 0.00 45.52 4.40
618 619 1.413812 GGGCAGGCAATTCCTAAATGG 59.586 52.381 0.00 0.00 45.52 3.16
619 620 2.109774 TGGGCAGGCAATTCCTAAATG 58.890 47.619 0.00 0.00 45.52 2.32
620 621 2.548464 TGGGCAGGCAATTCCTAAAT 57.452 45.000 0.00 0.00 45.52 1.40
621 622 2.109774 CATGGGCAGGCAATTCCTAAA 58.890 47.619 0.00 0.00 45.52 1.85
622 623 1.287442 TCATGGGCAGGCAATTCCTAA 59.713 47.619 0.00 0.00 45.52 2.69
623 624 0.925558 TCATGGGCAGGCAATTCCTA 59.074 50.000 0.00 0.00 45.52 2.94
625 626 0.971959 TGTCATGGGCAGGCAATTCC 60.972 55.000 0.00 0.00 0.00 3.01
626 627 0.896923 TTGTCATGGGCAGGCAATTC 59.103 50.000 0.00 0.00 0.00 2.17
627 628 1.575419 ATTGTCATGGGCAGGCAATT 58.425 45.000 0.00 0.00 0.00 2.32
628 629 2.313317 CTATTGTCATGGGCAGGCAAT 58.687 47.619 8.35 8.35 34.62 3.56
629 630 1.005805 ACTATTGTCATGGGCAGGCAA 59.994 47.619 0.00 0.00 0.00 4.52
630 631 0.625316 ACTATTGTCATGGGCAGGCA 59.375 50.000 0.00 0.00 0.00 4.75
631 632 1.133976 AGACTATTGTCATGGGCAGGC 60.134 52.381 9.96 0.00 45.20 4.85
632 633 3.287867 AAGACTATTGTCATGGGCAGG 57.712 47.619 9.96 0.00 45.20 4.85
633 634 5.649782 AAAAAGACTATTGTCATGGGCAG 57.350 39.130 9.96 0.00 45.20 4.85
654 655 7.175104 ACTATTGTCATGGGCTCTTCTAAAAA 58.825 34.615 0.00 0.00 0.00 1.94
655 656 6.721318 ACTATTGTCATGGGCTCTTCTAAAA 58.279 36.000 0.00 0.00 0.00 1.52
656 657 6.313519 ACTATTGTCATGGGCTCTTCTAAA 57.686 37.500 0.00 0.00 0.00 1.85
657 658 5.451937 CGACTATTGTCATGGGCTCTTCTAA 60.452 44.000 8.04 0.00 43.06 2.10
658 659 4.038042 CGACTATTGTCATGGGCTCTTCTA 59.962 45.833 8.04 0.00 43.06 2.10
659 660 3.181471 CGACTATTGTCATGGGCTCTTCT 60.181 47.826 8.04 0.00 43.06 2.85
660 661 3.126831 CGACTATTGTCATGGGCTCTTC 58.873 50.000 8.04 0.00 43.06 2.87
661 662 2.743183 GCGACTATTGTCATGGGCTCTT 60.743 50.000 8.04 0.00 43.06 2.85
662 663 1.202580 GCGACTATTGTCATGGGCTCT 60.203 52.381 8.04 0.00 43.06 4.09
663 664 1.202580 AGCGACTATTGTCATGGGCTC 60.203 52.381 8.04 0.00 43.06 4.70
664 665 0.833287 AGCGACTATTGTCATGGGCT 59.167 50.000 8.04 5.07 43.06 5.19
665 666 2.224066 ACTAGCGACTATTGTCATGGGC 60.224 50.000 8.04 2.91 43.06 5.36
666 667 3.735237 ACTAGCGACTATTGTCATGGG 57.265 47.619 8.04 0.00 43.06 4.00
667 668 6.073327 TCTTACTAGCGACTATTGTCATGG 57.927 41.667 8.04 0.59 43.06 3.66
668 669 7.197017 AGTTCTTACTAGCGACTATTGTCATG 58.803 38.462 8.04 0.00 36.55 3.07
669 670 7.336161 AGTTCTTACTAGCGACTATTGTCAT 57.664 36.000 8.04 0.00 36.55 3.06
670 671 6.754702 AGTTCTTACTAGCGACTATTGTCA 57.245 37.500 8.04 0.00 36.55 3.58
671 672 6.472808 CCAAGTTCTTACTAGCGACTATTGTC 59.527 42.308 0.00 0.00 35.52 3.18
672 673 6.331061 CCAAGTTCTTACTAGCGACTATTGT 58.669 40.000 0.00 0.00 33.17 2.71
673 674 5.232414 GCCAAGTTCTTACTAGCGACTATTG 59.768 44.000 0.00 0.00 33.17 1.90
674 675 5.105473 TGCCAAGTTCTTACTAGCGACTATT 60.105 40.000 0.00 0.00 36.86 1.73
675 676 4.401519 TGCCAAGTTCTTACTAGCGACTAT 59.598 41.667 0.00 0.00 36.86 2.12
676 677 3.760151 TGCCAAGTTCTTACTAGCGACTA 59.240 43.478 0.00 0.00 36.86 2.59
677 678 2.561419 TGCCAAGTTCTTACTAGCGACT 59.439 45.455 0.00 0.00 36.86 4.18
678 679 2.924290 CTGCCAAGTTCTTACTAGCGAC 59.076 50.000 0.00 0.00 36.86 5.19
679 680 2.823747 TCTGCCAAGTTCTTACTAGCGA 59.176 45.455 0.00 0.00 36.86 4.93
680 681 3.119459 TCTCTGCCAAGTTCTTACTAGCG 60.119 47.826 0.00 0.00 36.86 4.26
681 682 4.429108 CTCTCTGCCAAGTTCTTACTAGC 58.571 47.826 0.00 0.00 35.44 3.42
682 683 4.679372 GCCTCTCTGCCAAGTTCTTACTAG 60.679 50.000 0.00 0.00 33.17 2.57
683 684 3.195825 GCCTCTCTGCCAAGTTCTTACTA 59.804 47.826 0.00 0.00 33.17 1.82
684 685 2.027653 GCCTCTCTGCCAAGTTCTTACT 60.028 50.000 0.00 0.00 35.68 2.24
685 686 2.027653 AGCCTCTCTGCCAAGTTCTTAC 60.028 50.000 0.00 0.00 0.00 2.34
686 687 2.027745 CAGCCTCTCTGCCAAGTTCTTA 60.028 50.000 0.00 0.00 35.78 2.10
687 688 1.063183 AGCCTCTCTGCCAAGTTCTT 58.937 50.000 0.00 0.00 0.00 2.52
688 689 0.324285 CAGCCTCTCTGCCAAGTTCT 59.676 55.000 0.00 0.00 35.78 3.01
689 690 0.676151 CCAGCCTCTCTGCCAAGTTC 60.676 60.000 0.00 0.00 41.50 3.01
690 691 1.377994 CCAGCCTCTCTGCCAAGTT 59.622 57.895 0.00 0.00 41.50 2.66
691 692 1.845205 ACCAGCCTCTCTGCCAAGT 60.845 57.895 0.00 0.00 41.50 3.16
692 693 1.376942 CACCAGCCTCTCTGCCAAG 60.377 63.158 0.00 0.00 41.50 3.61
693 694 2.752358 CACCAGCCTCTCTGCCAA 59.248 61.111 0.00 0.00 41.50 4.52
737 738 2.982643 ATGCTGAACATGGGCCCGA 61.983 57.895 19.37 6.86 37.70 5.14
738 739 2.440796 ATGCTGAACATGGGCCCG 60.441 61.111 19.37 6.14 37.70 6.13
754 755 2.891580 ACACGGTTCAGTCTGTAGTCAT 59.108 45.455 0.00 0.00 0.00 3.06
759 760 1.198408 CGCTACACGGTTCAGTCTGTA 59.802 52.381 0.00 0.00 38.44 2.74
890 903 0.314339 GCTCGCGCTGTAACGATTTC 60.314 55.000 5.56 0.00 37.72 2.17
917 931 5.339990 GGAGAAGAAGAAGACGATGAAGAG 58.660 45.833 0.00 0.00 0.00 2.85
926 940 2.003196 CAGCCGGAGAAGAAGAAGAC 57.997 55.000 5.05 0.00 0.00 3.01
927 941 0.247736 GCAGCCGGAGAAGAAGAAGA 59.752 55.000 5.05 0.00 0.00 2.87
928 942 1.080995 CGCAGCCGGAGAAGAAGAAG 61.081 60.000 5.05 0.00 0.00 2.85
986 1000 2.833582 TCATCTCTCCCGTCGCCC 60.834 66.667 0.00 0.00 0.00 6.13
1118 1132 2.797177 AGAGAAGGGAATTGAGTGCC 57.203 50.000 0.00 0.00 0.00 5.01
1128 1142 1.701847 AGAGCAAGCAAAGAGAAGGGA 59.298 47.619 0.00 0.00 0.00 4.20
1132 1146 3.144506 CCTGAAGAGCAAGCAAAGAGAA 58.855 45.455 0.00 0.00 0.00 2.87
1397 1411 2.995258 ACAGCGCATGCAAAAATTAAGG 59.005 40.909 19.57 0.00 46.23 2.69
1409 1423 0.109458 ATTCAGCACAACAGCGCATG 60.109 50.000 11.47 8.37 40.15 4.06
1417 1431 1.909700 TGGAGGGAATTCAGCACAAC 58.090 50.000 7.93 0.00 0.00 3.32
1704 1756 4.858692 GCTTACGACGTATAAAAGACCACA 59.141 41.667 8.81 0.00 0.00 4.17
1722 1774 5.179533 CCCTCCTGTTTCTCTTTAGCTTAC 58.820 45.833 0.00 0.00 0.00 2.34
1724 1776 3.653352 ACCCTCCTGTTTCTCTTTAGCTT 59.347 43.478 0.00 0.00 0.00 3.74
1836 1888 3.821033 GCTCCCTCAGTTTGTACAACAAT 59.179 43.478 8.07 0.00 38.00 2.71
1957 2009 7.287235 GGGTAAGAGGCTAAGTCTAATTCACTA 59.713 40.741 0.00 0.00 0.00 2.74
2331 2410 0.603065 GAGTTGTTCCCACCATTGCC 59.397 55.000 0.00 0.00 0.00 4.52
2402 2481 8.316214 ACCTTCGTATAATCAGTCCAAAAGTTA 58.684 33.333 0.00 0.00 0.00 2.24
2669 2748 4.035017 GGGAAATCATACAAAATCGTGCG 58.965 43.478 0.00 0.00 0.00 5.34
2736 2815 3.632145 CCACAATAAACTGGATACCCTGC 59.368 47.826 0.00 0.00 35.04 4.85
2788 2867 8.402798 TCAGCAATGTTTTCCAAATAAGTAGA 57.597 30.769 0.00 0.00 0.00 2.59
2790 2869 8.801299 TCATCAGCAATGTTTTCCAAATAAGTA 58.199 29.630 0.00 0.00 36.68 2.24
2844 2923 2.834549 AGTAACTGGATCCCTCACACAG 59.165 50.000 9.90 0.00 35.40 3.66
2916 2995 4.454728 AAGCTTTGAAAGTGAAACAGCA 57.545 36.364 6.81 0.00 41.43 4.41
3009 3088 1.032014 AGCACAGAAACAAATGCGGT 58.968 45.000 0.00 0.00 42.98 5.68
3547 3631 5.073144 AGGGTGACAAAGAACCTATGAGAAA 59.927 40.000 0.00 0.00 36.64 2.52
3562 3647 6.271391 TCTTGTATAGAAAGGAAGGGTGACAA 59.729 38.462 0.00 0.00 0.00 3.18
3856 5162 8.914011 TCTAGCAATTAAGAGTATGCAGTTAGA 58.086 33.333 0.00 0.00 41.18 2.10
3913 5219 0.182537 TTTCAGGGGTCAGTGTGTGG 59.817 55.000 0.00 0.00 0.00 4.17
3943 5249 4.082190 TCAACAGAGTATGGGTCTTCTTCG 60.082 45.833 0.00 0.00 0.00 3.79
4003 5309 9.875691 AATTAAATGGATTTCAAAGTCTTAGGC 57.124 29.630 0.00 0.00 0.00 3.93
4012 5318 9.352784 CGCAGTAAGAATTAAATGGATTTCAAA 57.647 29.630 0.00 0.00 28.70 2.69
4013 5319 8.519526 ACGCAGTAAGAATTAAATGGATTTCAA 58.480 29.630 0.00 0.00 41.94 2.69
4015 5321 7.044052 GCACGCAGTAAGAATTAAATGGATTTC 60.044 37.037 0.00 0.00 41.61 2.17
4018 5324 5.221048 GGCACGCAGTAAGAATTAAATGGAT 60.221 40.000 0.00 0.00 41.61 3.41
4032 5346 0.177836 ATGTAGCATGGCACGCAGTA 59.822 50.000 8.75 0.00 41.61 2.74
4038 5352 0.526954 GCAGCAATGTAGCATGGCAC 60.527 55.000 10.64 0.00 36.85 5.01
4054 5368 4.252073 AGACACATAAAGAGCTCAAGCAG 58.748 43.478 17.77 5.23 45.16 4.24
4079 5393 9.547753 CCAATGTAGCTAATAGTAAGTGACAAT 57.452 33.333 0.00 0.00 0.00 2.71
4224 5542 6.712547 AGAGAACTTTGGTTTTGTATCTCTGG 59.287 38.462 0.00 0.00 35.58 3.86
4282 5600 2.366435 GATGGGAACGGGAGGGGA 60.366 66.667 0.00 0.00 0.00 4.81
4297 5615 3.726607 GATGTTGCTCCTGAAGATCGAT 58.273 45.455 0.00 0.00 0.00 3.59
4350 5668 2.266279 CCTTTGTCTGGGTTCCCTCTA 58.734 52.381 9.43 0.00 0.00 2.43
4429 5747 1.127343 GCCTCTCTATGAAGGGCAGT 58.873 55.000 0.00 0.00 42.08 4.40
4594 6098 7.039882 GGTTTTAGTCAGAATCCGATGTTAGA 58.960 38.462 0.00 0.00 0.00 2.10
4620 6274 3.841372 GCACACAGAAGAAAAACGAGTCG 60.841 47.826 11.85 11.85 0.00 4.18
4627 6281 1.673920 GTCCCGCACACAGAAGAAAAA 59.326 47.619 0.00 0.00 0.00 1.94
4628 6282 1.305201 GTCCCGCACACAGAAGAAAA 58.695 50.000 0.00 0.00 0.00 2.29
4659 6346 1.153409 CCCTGCAGCAGCTCTACAG 60.153 63.158 17.81 8.95 42.74 2.74
4660 6347 1.915266 ACCCTGCAGCAGCTCTACA 60.915 57.895 17.81 0.00 42.74 2.74
4673 6360 1.069596 GCCCAGCAAAAACACCCTG 59.930 57.895 0.00 0.00 0.00 4.45
4677 6364 3.792401 AGTTTTAGCCCAGCAAAAACAC 58.208 40.909 11.23 3.42 0.00 3.32
4711 6398 3.055719 CACCCACATCCACCGCAC 61.056 66.667 0.00 0.00 0.00 5.34
4737 6424 4.325119 CATGAGAATATTCCAGAGGCCAG 58.675 47.826 11.92 0.00 0.00 4.85
4738 6425 3.497405 GCATGAGAATATTCCAGAGGCCA 60.497 47.826 11.92 0.52 0.00 5.36
4739 6426 3.080319 GCATGAGAATATTCCAGAGGCC 58.920 50.000 11.92 0.00 0.00 5.19
4740 6427 3.748083 TGCATGAGAATATTCCAGAGGC 58.252 45.455 11.92 9.65 0.00 4.70
4741 6428 5.314529 ACATGCATGAGAATATTCCAGAGG 58.685 41.667 32.75 0.18 0.00 3.69
4742 6429 7.160049 AGTACATGCATGAGAATATTCCAGAG 58.840 38.462 32.75 0.59 0.00 3.35
4743 6430 7.071069 AGTACATGCATGAGAATATTCCAGA 57.929 36.000 32.75 0.00 0.00 3.86
4744 6431 7.332926 GGTAGTACATGCATGAGAATATTCCAG 59.667 40.741 32.75 1.77 0.00 3.86
4771 6458 4.022935 CAGTTCAATTGCAAAGCAGGTAGA 60.023 41.667 1.71 0.00 40.61 2.59
4773 6460 3.888323 TCAGTTCAATTGCAAAGCAGGTA 59.112 39.130 1.71 0.00 40.61 3.08
4774 6461 2.694628 TCAGTTCAATTGCAAAGCAGGT 59.305 40.909 1.71 0.00 40.61 4.00
4775 6462 3.374220 TCAGTTCAATTGCAAAGCAGG 57.626 42.857 1.71 0.00 40.61 4.85
4776 6463 4.613944 TCTTCAGTTCAATTGCAAAGCAG 58.386 39.130 1.71 0.00 40.61 4.24
4795 6482 1.227380 GGACGCCAGATCGCATCTT 60.227 57.895 0.00 0.00 37.58 2.40
4819 6506 1.000274 GCATCACAAGTTGACAACCCC 60.000 52.381 14.72 0.00 36.92 4.95
4825 6512 3.489738 GGGCATATGCATCACAAGTTGAC 60.490 47.826 28.07 6.61 44.36 3.18
4826 6513 2.689471 GGGCATATGCATCACAAGTTGA 59.311 45.455 28.07 0.00 44.36 3.18
4827 6514 2.427812 TGGGCATATGCATCACAAGTTG 59.572 45.455 28.07 0.00 44.36 3.16
4828 6515 2.737544 TGGGCATATGCATCACAAGTT 58.262 42.857 28.07 0.00 44.36 2.66
4829 6516 2.440517 TGGGCATATGCATCACAAGT 57.559 45.000 28.07 0.00 44.36 3.16
4830 6517 2.029380 CCATGGGCATATGCATCACAAG 60.029 50.000 28.07 16.61 44.36 3.16
4879 6566 1.738830 GCATGTGTGGGCATTGCAC 60.739 57.895 11.39 7.60 36.91 4.57
4926 6613 0.558220 ACGGAGATCTGGATCCAGGA 59.442 55.000 35.95 24.43 43.75 3.86
4928 6615 3.133721 AGAAAACGGAGATCTGGATCCAG 59.866 47.826 32.60 32.60 44.86 3.86
4964 6660 1.065551 GCATTGGCGCCTTACCTTAAG 59.934 52.381 29.70 8.05 35.56 1.85
5028 6725 0.826715 CAGGTCTCCATCCACATCGT 59.173 55.000 0.00 0.00 0.00 3.73
5029 6726 1.114627 TCAGGTCTCCATCCACATCG 58.885 55.000 0.00 0.00 0.00 3.84
5050 6747 1.732259 CCTCCGAAATTTGACAGGTCG 59.268 52.381 0.00 0.00 0.00 4.79
5066 6767 3.350833 CTCATATATGCCAAAGCCCTCC 58.649 50.000 7.92 0.00 38.69 4.30
5079 6780 7.806487 CAGTCAAAATTCGCAATGCTCATATAT 59.194 33.333 2.94 0.00 0.00 0.86
5083 6784 4.171005 CAGTCAAAATTCGCAATGCTCAT 58.829 39.130 2.94 0.00 0.00 2.90
5084 6785 3.004629 ACAGTCAAAATTCGCAATGCTCA 59.995 39.130 2.94 0.00 0.00 4.26
5088 6789 4.084952 CCACAACAGTCAAAATTCGCAATG 60.085 41.667 0.00 0.00 0.00 2.82
5125 6828 1.296056 AAACTCGTACCGTGCCATGC 61.296 55.000 0.00 0.00 0.00 4.06
5185 6899 4.157840 ACAAGTCAAGAAAACCAAGACACC 59.842 41.667 0.00 0.00 0.00 4.16
5211 6928 3.031126 GACGCGGTGAAGTAAAACAAAC 58.969 45.455 12.47 0.00 0.00 2.93
5280 6998 3.119849 GCCATTTTCTTGTACGCAGACAT 60.120 43.478 0.00 0.00 0.00 3.06
5297 7021 2.409870 GCAAGTGCTAGGCGCCATT 61.410 57.895 31.54 12.06 40.23 3.16
5303 7027 2.019249 TCATTCATGCAAGTGCTAGGC 58.981 47.619 4.69 0.00 42.66 3.93
5315 7039 3.894759 ACCATTCCCTCACTCATTCATG 58.105 45.455 0.00 0.00 0.00 3.07
5316 7040 4.275810 CAACCATTCCCTCACTCATTCAT 58.724 43.478 0.00 0.00 0.00 2.57
5317 7041 3.561960 CCAACCATTCCCTCACTCATTCA 60.562 47.826 0.00 0.00 0.00 2.57
5318 7042 3.019564 CCAACCATTCCCTCACTCATTC 58.980 50.000 0.00 0.00 0.00 2.67
5319 7043 2.379907 ACCAACCATTCCCTCACTCATT 59.620 45.455 0.00 0.00 0.00 2.57
5324 7048 1.751437 GCTACCAACCATTCCCTCAC 58.249 55.000 0.00 0.00 0.00 3.51
5329 7053 1.095807 GCCTCGCTACCAACCATTCC 61.096 60.000 0.00 0.00 0.00 3.01
5387 7111 4.923871 TCTTTTCGAGACTGTCTTGTATGC 59.076 41.667 21.40 3.78 0.00 3.14
5436 7161 6.452494 TGACTAGCTAATCCACTCACTAAC 57.548 41.667 0.00 0.00 0.00 2.34
5437 7162 6.017026 CGATGACTAGCTAATCCACTCACTAA 60.017 42.308 0.00 0.00 0.00 2.24
5438 7163 5.470437 CGATGACTAGCTAATCCACTCACTA 59.530 44.000 0.00 0.00 0.00 2.74
5439 7164 4.277174 CGATGACTAGCTAATCCACTCACT 59.723 45.833 0.00 0.00 0.00 3.41
5552 7285 5.863935 TCTCTTTGATGAACTGATGTACGTG 59.136 40.000 0.00 0.00 0.00 4.49
5571 7304 3.118811 CGGCTCCATTCTCTCTTTCTCTT 60.119 47.826 0.00 0.00 0.00 2.85
5572 7305 2.430332 CGGCTCCATTCTCTCTTTCTCT 59.570 50.000 0.00 0.00 0.00 3.10
5573 7306 2.482839 CCGGCTCCATTCTCTCTTTCTC 60.483 54.545 0.00 0.00 0.00 2.87
5574 7307 1.484240 CCGGCTCCATTCTCTCTTTCT 59.516 52.381 0.00 0.00 0.00 2.52
5575 7308 1.208293 ACCGGCTCCATTCTCTCTTTC 59.792 52.381 0.00 0.00 0.00 2.62
5576 7309 1.065854 CACCGGCTCCATTCTCTCTTT 60.066 52.381 0.00 0.00 0.00 2.52
5577 7310 0.539051 CACCGGCTCCATTCTCTCTT 59.461 55.000 0.00 0.00 0.00 2.85
5578 7311 0.324738 TCACCGGCTCCATTCTCTCT 60.325 55.000 0.00 0.00 0.00 3.10
5579 7312 0.537188 TTCACCGGCTCCATTCTCTC 59.463 55.000 0.00 0.00 0.00 3.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.