Multiple sequence alignment - TraesCS5A01G068700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G068700 chr5A 100.000 6519 0 0 1 6519 77091063 77084545 0.000000e+00 12039.0
1 TraesCS5A01G068700 chr5A 96.403 139 5 0 6162 6300 402348350 402348488 5.080000e-56 230.0
2 TraesCS5A01G068700 chr5A 94.964 139 7 0 6171 6309 619719053 619719191 1.100000e-52 219.0
3 TraesCS5A01G068700 chr5A 93.793 145 8 1 6157 6300 145678323 145678467 3.960000e-52 217.0
4 TraesCS5A01G068700 chr5A 94.326 141 8 0 6174 6314 658798858 658798718 3.960000e-52 217.0
5 TraesCS5A01G068700 chr5B 92.916 6183 228 79 25 6175 89633785 89627781 0.000000e+00 8798.0
6 TraesCS5A01G068700 chr5B 92.361 144 10 1 6173 6315 621230363 621230220 3.080000e-48 204.0
7 TraesCS5A01G068700 chr5B 93.458 107 7 0 6298 6404 89627783 89627677 6.770000e-35 159.0
8 TraesCS5A01G068700 chr5D 93.483 5739 194 67 509 6175 80704538 80698908 0.000000e+00 8360.0
9 TraesCS5A01G068700 chr5D 82.394 426 29 7 94 510 80704977 80704589 4.870000e-86 329.0
10 TraesCS5A01G068700 chr5D 95.146 103 4 1 6415 6517 80696599 80696498 1.880000e-35 161.0
11 TraesCS5A01G068700 chr5D 96.203 79 3 0 6337 6415 80696759 80696681 5.300000e-26 130.0
12 TraesCS5A01G068700 chr5D 83.696 92 9 2 6424 6515 535816483 535816398 1.510000e-11 82.4
13 TraesCS5A01G068700 chr5D 97.619 42 1 0 6298 6339 80698910 80698869 9.070000e-09 73.1
14 TraesCS5A01G068700 chr4B 79.585 578 105 11 4379 4954 78025307 78025873 1.020000e-107 401.0
15 TraesCS5A01G068700 chr4B 82.692 104 16 2 6416 6519 33069943 33070044 2.500000e-14 91.6
16 TraesCS5A01G068700 chr4B 89.062 64 6 1 6361 6423 512558972 512559035 1.950000e-10 78.7
17 TraesCS5A01G068700 chr6A 99.237 131 1 0 6171 6301 599910812 599910942 3.040000e-58 237.0
18 TraesCS5A01G068700 chr6A 100.000 127 0 0 6174 6300 563027339 563027465 1.090000e-57 235.0
19 TraesCS5A01G068700 chr2A 99.213 127 1 0 6174 6300 693290317 693290443 5.080000e-56 230.0
20 TraesCS5A01G068700 chr2A 92.715 151 9 2 6169 6318 754190549 754190698 3.960000e-52 217.0
21 TraesCS5A01G068700 chr2A 90.769 65 6 0 6416 6480 445714901 445714965 3.240000e-13 87.9
22 TraesCS5A01G068700 chr7A 95.652 138 6 0 6173 6310 680418986 680419123 8.510000e-54 222.0
23 TraesCS5A01G068700 chr7B 92.568 148 10 1 6173 6319 1321331 1321184 1.840000e-50 211.0
24 TraesCS5A01G068700 chr3A 88.194 144 16 1 6174 6316 38604701 38604844 3.130000e-38 171.0
25 TraesCS5A01G068700 chr4A 81.868 182 33 0 4396 4577 38367601 38367782 3.150000e-33 154.0
26 TraesCS5A01G068700 chr4A 84.615 104 10 2 6416 6519 477033227 477033324 1.500000e-16 99.0
27 TraesCS5A01G068700 chr4A 82.692 104 12 2 6416 6519 60654263 60654166 3.240000e-13 87.9
28 TraesCS5A01G068700 chr4A 89.062 64 6 1 6361 6423 48149276 48149213 1.950000e-10 78.7
29 TraesCS5A01G068700 chr4A 88.636 44 4 1 6277 6320 582827110 582827152 1.200000e-02 52.8
30 TraesCS5A01G068700 chr2B 83.810 105 11 2 6415 6519 185812853 185812951 1.940000e-15 95.3
31 TraesCS5A01G068700 chr2D 92.308 65 5 0 6416 6480 335120945 335121009 6.960000e-15 93.5
32 TraesCS5A01G068700 chr2D 89.394 66 7 0 6415 6480 489409441 489409506 4.190000e-12 84.2
33 TraesCS5A01G068700 chr7D 94.643 56 3 0 6361 6416 614250266 614250321 3.240000e-13 87.9
34 TraesCS5A01G068700 chr7D 92.593 54 4 0 6361 6414 162241642 162241589 1.950000e-10 78.7
35 TraesCS5A01G068700 chr7D 92.308 39 3 0 6481 6519 516029107 516029145 1.000000e-03 56.5
36 TraesCS5A01G068700 chr3D 90.769 65 6 0 6416 6480 383544054 383544118 3.240000e-13 87.9
37 TraesCS5A01G068700 chr4D 89.062 64 6 1 6361 6423 415920355 415920418 1.950000e-10 78.7
38 TraesCS5A01G068700 chr1B 94.118 51 3 0 6361 6411 507851825 507851875 1.950000e-10 78.7
39 TraesCS5A01G068700 chr1A 94.118 51 3 0 6361 6411 479836164 479836214 1.950000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G068700 chr5A 77084545 77091063 6518 True 12039.00 12039 100.000 1 6519 1 chr5A.!!$R1 6518
1 TraesCS5A01G068700 chr5B 89627677 89633785 6108 True 4478.50 8798 93.187 25 6404 2 chr5B.!!$R2 6379
2 TraesCS5A01G068700 chr5D 80696498 80704977 8479 True 1810.62 8360 92.969 94 6517 5 chr5D.!!$R2 6423
3 TraesCS5A01G068700 chr4B 78025307 78025873 566 False 401.00 401 79.585 4379 4954 1 chr4B.!!$F2 575

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
864 952 0.034089 CACTCCCCATCCCCAAACTC 60.034 60.000 0.00 0.00 0.00 3.01 F
1594 1712 0.113190 ATGGGGGCCATAGCTTAAGC 59.887 55.000 20.09 20.09 43.19 3.09 F
1643 1761 1.069906 CCTAGTTTGCTGCAACGACAC 60.070 52.381 15.72 10.60 0.00 3.67 F
3364 3482 0.328258 CCTTGGTACCCCAACAGAGG 59.672 60.000 10.07 1.76 45.93 3.69 F
5069 5213 1.451387 CCCCTATGCGGCGAACTTT 60.451 57.895 12.98 0.00 0.00 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2424 2542 1.269166 GATAGTCACTTGTCGCGGTG 58.731 55.000 6.13 6.58 35.06 4.94 R
3364 3482 1.477700 TGCAAACTCCAATATGGCTGC 59.522 47.619 0.00 0.00 37.47 5.25 R
3435 3553 5.104982 TGTTGAATTGAAAGGCTCCACTTTT 60.105 36.000 0.00 0.00 40.55 2.27 R
5173 5325 0.239347 GACACAACAGGTCTGCATGC 59.761 55.000 11.82 11.82 32.54 4.06 R
5874 6027 1.152984 CTACATGCGCCCCATTCCA 60.153 57.895 4.18 0.00 29.71 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.480845 GTGTTTCTCGTGTGCCTTAGT 58.519 47.619 0.00 0.00 0.00 2.24
21 22 3.645884 GTGTTTCTCGTGTGCCTTAGTA 58.354 45.455 0.00 0.00 0.00 1.82
22 23 3.427863 GTGTTTCTCGTGTGCCTTAGTAC 59.572 47.826 0.00 0.00 0.00 2.73
23 24 3.319972 TGTTTCTCGTGTGCCTTAGTACT 59.680 43.478 0.00 0.00 0.00 2.73
34 35 5.166398 GTGCCTTAGTACTGTAACGAACAT 58.834 41.667 5.39 0.00 37.50 2.71
41 42 1.997606 ACTGTAACGAACATTAGGCGC 59.002 47.619 0.00 0.00 37.50 6.53
50 51 0.679960 ACATTAGGCGCCCCTTTCAC 60.680 55.000 26.15 0.00 42.87 3.18
54 55 0.178987 TAGGCGCCCCTTTCACAAAA 60.179 50.000 26.15 0.00 42.87 2.44
85 86 8.848474 AAAATTAATACGATATGGGGAGAGTG 57.152 34.615 0.00 0.00 0.00 3.51
86 87 7.792364 AATTAATACGATATGGGGAGAGTGA 57.208 36.000 0.00 0.00 0.00 3.41
88 89 5.923733 AATACGATATGGGGAGAGTGATC 57.076 43.478 0.00 0.00 0.00 2.92
91 92 4.227197 ACGATATGGGGAGAGTGATCTTT 58.773 43.478 0.00 0.00 0.00 2.52
92 93 4.282195 ACGATATGGGGAGAGTGATCTTTC 59.718 45.833 0.00 0.00 0.00 2.62
114 115 5.560724 TCTTTTTGGTTGAGACTGATAGGG 58.439 41.667 0.00 0.00 0.00 3.53
229 230 1.204062 CGCCGTGTAAAGTGTGCAG 59.796 57.895 0.00 0.00 0.00 4.41
230 231 1.082104 GCCGTGTAAAGTGTGCAGC 60.082 57.895 0.00 0.00 0.00 5.25
231 232 1.781025 GCCGTGTAAAGTGTGCAGCA 61.781 55.000 0.00 0.00 0.00 4.41
232 233 0.235665 CCGTGTAAAGTGTGCAGCAG 59.764 55.000 0.00 0.00 0.00 4.24
233 234 0.937304 CGTGTAAAGTGTGCAGCAGT 59.063 50.000 0.00 0.00 0.00 4.40
234 235 1.330521 CGTGTAAAGTGTGCAGCAGTT 59.669 47.619 0.00 0.00 42.18 3.16
235 236 2.542178 CGTGTAAAGTGTGCAGCAGTTA 59.458 45.455 0.00 0.00 39.66 2.24
236 237 3.186409 CGTGTAAAGTGTGCAGCAGTTAT 59.814 43.478 0.00 4.46 39.66 1.89
237 238 4.466828 GTGTAAAGTGTGCAGCAGTTATG 58.533 43.478 0.00 0.00 39.66 1.90
238 239 4.024048 GTGTAAAGTGTGCAGCAGTTATGT 60.024 41.667 0.00 0.00 39.66 2.29
239 240 4.578516 TGTAAAGTGTGCAGCAGTTATGTT 59.421 37.500 0.00 0.00 39.66 2.71
240 241 5.760743 TGTAAAGTGTGCAGCAGTTATGTTA 59.239 36.000 0.00 0.00 39.66 2.41
241 242 5.766150 AAAGTGTGCAGCAGTTATGTTAA 57.234 34.783 0.00 0.00 39.66 2.01
242 243 5.766150 AAGTGTGCAGCAGTTATGTTAAA 57.234 34.783 0.00 0.00 38.86 1.52
243 244 5.766150 AGTGTGCAGCAGTTATGTTAAAA 57.234 34.783 0.00 0.00 0.00 1.52
244 245 6.142818 AGTGTGCAGCAGTTATGTTAAAAA 57.857 33.333 0.00 0.00 0.00 1.94
306 307 5.740290 TCCGGAACAAAAGAATCTCTAGT 57.260 39.130 0.00 0.00 0.00 2.57
319 320 8.664211 AAGAATCTCTAGTTTCGTTTTGTCTT 57.336 30.769 0.00 0.00 0.00 3.01
330 331 2.407361 CGTTTTGTCTTATCACGCGTCT 59.593 45.455 9.86 1.57 0.00 4.18
335 336 0.526211 TCTTATCACGCGTCTGTGCT 59.474 50.000 9.86 0.00 39.73 4.40
338 339 0.038618 TATCACGCGTCTGTGCTTGT 60.039 50.000 9.86 0.00 39.73 3.16
339 340 0.038618 ATCACGCGTCTGTGCTTGTA 60.039 50.000 9.86 0.00 39.73 2.41
350 351 6.401688 GCGTCTGTGCTTGTACAAAATATACA 60.402 38.462 10.03 9.17 0.00 2.29
351 352 6.953743 CGTCTGTGCTTGTACAAAATATACAC 59.046 38.462 10.03 10.97 32.30 2.90
353 354 7.119262 GTCTGTGCTTGTACAAAATATACACCT 59.881 37.037 10.03 0.00 32.30 4.00
358 359 8.634444 TGCTTGTACAAAATATACACCTTGTTT 58.366 29.630 10.03 0.00 34.08 2.83
366 367 8.915654 CAAAATATACACCTTGTTTCTTTGCTC 58.084 33.333 0.00 0.00 0.00 4.26
368 369 2.733956 ACACCTTGTTTCTTTGCTCCA 58.266 42.857 0.00 0.00 0.00 3.86
397 403 4.597404 TTTTCATGCTGCCAAACACATA 57.403 36.364 0.00 0.00 0.00 2.29
398 404 4.597404 TTTCATGCTGCCAAACACATAA 57.403 36.364 0.00 0.00 0.00 1.90
399 405 3.853831 TCATGCTGCCAAACACATAAG 57.146 42.857 0.00 0.00 0.00 1.73
400 406 3.419943 TCATGCTGCCAAACACATAAGA 58.580 40.909 0.00 0.00 0.00 2.10
401 407 3.441222 TCATGCTGCCAAACACATAAGAG 59.559 43.478 0.00 0.00 0.00 2.85
411 417 6.471519 GCCAAACACATAAGAGTACGTACTAG 59.528 42.308 27.44 16.52 36.50 2.57
455 469 5.442402 GTCGTCGTCTCATTTATACCTCTC 58.558 45.833 0.00 0.00 0.00 3.20
457 471 4.610905 CGTCGTCTCATTTATACCTCTCCG 60.611 50.000 0.00 0.00 0.00 4.63
462 476 6.515200 CGTCTCATTTATACCTCTCCGATGTT 60.515 42.308 0.00 0.00 0.00 2.71
466 480 8.417273 TCATTTATACCTCTCCGATGTTATCA 57.583 34.615 0.00 0.00 0.00 2.15
492 506 5.016173 ACATGCCATCTCTCTCTAGGTATC 58.984 45.833 0.00 0.00 0.00 2.24
526 590 7.105588 TCTATCCCTACAGTATTTATACGCGA 58.894 38.462 15.93 0.00 38.28 5.87
536 600 9.414295 ACAGTATTTATACGCGAGCATTAATTA 57.586 29.630 15.93 0.00 38.28 1.40
542 606 9.588774 TTTATACGCGAGCATTAATTAATTCAC 57.411 29.630 15.93 1.97 0.00 3.18
570 634 2.106332 CGTATCCGGCGCCTCTTT 59.894 61.111 26.68 9.09 0.00 2.52
571 635 1.520787 CGTATCCGGCGCCTCTTTT 60.521 57.895 26.68 7.17 0.00 2.27
572 636 1.488261 CGTATCCGGCGCCTCTTTTC 61.488 60.000 26.68 9.43 0.00 2.29
573 637 0.179081 GTATCCGGCGCCTCTTTTCT 60.179 55.000 26.68 4.33 0.00 2.52
593 657 4.648651 TCTAAAAGGCACCTTCCTTGTAC 58.351 43.478 1.61 0.00 45.25 2.90
610 674 5.065474 CCTTGTACCTTCGTTTTTGTTCTCA 59.935 40.000 0.00 0.00 0.00 3.27
612 676 5.421277 TGTACCTTCGTTTTTGTTCTCAGA 58.579 37.500 0.00 0.00 0.00 3.27
613 677 6.053005 TGTACCTTCGTTTTTGTTCTCAGAT 58.947 36.000 0.00 0.00 0.00 2.90
614 678 7.211573 TGTACCTTCGTTTTTGTTCTCAGATA 58.788 34.615 0.00 0.00 0.00 1.98
615 679 6.541111 ACCTTCGTTTTTGTTCTCAGATAC 57.459 37.500 0.00 0.00 0.00 2.24
698 762 4.606961 AGATTTTTCTTTTCTTCGCGCAA 58.393 34.783 8.75 0.00 0.00 4.85
699 763 5.040635 AGATTTTTCTTTTCTTCGCGCAAA 58.959 33.333 8.75 0.00 0.00 3.68
700 764 5.518487 AGATTTTTCTTTTCTTCGCGCAAAA 59.482 32.000 8.75 5.67 0.00 2.44
747 811 3.502237 GGTACGTATACATGGCCGG 57.498 57.895 0.00 0.00 32.40 6.13
748 812 0.675633 GGTACGTATACATGGCCGGT 59.324 55.000 1.90 0.76 32.40 5.28
762 850 1.969862 CCGGTGACTTCGGGTACTT 59.030 57.895 0.00 0.00 43.45 2.24
763 851 0.319405 CCGGTGACTTCGGGTACTTT 59.681 55.000 0.00 0.00 43.45 2.66
788 876 0.595567 TCGTTTGACCCAACGACTCG 60.596 55.000 4.61 0.00 0.00 4.18
846 934 2.821810 CACGCCCACACACACACA 60.822 61.111 0.00 0.00 0.00 3.72
848 936 2.513666 CGCCCACACACACACACT 60.514 61.111 0.00 0.00 0.00 3.55
849 937 2.534019 CGCCCACACACACACACTC 61.534 63.158 0.00 0.00 0.00 3.51
850 938 2.186826 GCCCACACACACACACTCC 61.187 63.158 0.00 0.00 0.00 3.85
853 941 1.223211 CACACACACACACTCCCCA 59.777 57.895 0.00 0.00 0.00 4.96
854 942 0.179020 CACACACACACACTCCCCAT 60.179 55.000 0.00 0.00 0.00 4.00
857 945 1.002134 CACACACACTCCCCATCCC 60.002 63.158 0.00 0.00 0.00 3.85
858 946 2.231380 ACACACACTCCCCATCCCC 61.231 63.158 0.00 0.00 0.00 4.81
859 947 2.209809 ACACACTCCCCATCCCCA 59.790 61.111 0.00 0.00 0.00 4.96
860 948 1.465188 ACACACTCCCCATCCCCAA 60.465 57.895 0.00 0.00 0.00 4.12
861 949 1.071314 ACACACTCCCCATCCCCAAA 61.071 55.000 0.00 0.00 0.00 3.28
862 950 0.611896 CACACTCCCCATCCCCAAAC 60.612 60.000 0.00 0.00 0.00 2.93
863 951 0.776080 ACACTCCCCATCCCCAAACT 60.776 55.000 0.00 0.00 0.00 2.66
864 952 0.034089 CACTCCCCATCCCCAAACTC 60.034 60.000 0.00 0.00 0.00 3.01
865 953 1.214992 ACTCCCCATCCCCAAACTCC 61.215 60.000 0.00 0.00 0.00 3.85
866 954 2.270874 CTCCCCATCCCCAAACTCCG 62.271 65.000 0.00 0.00 0.00 4.63
867 955 2.440247 CCCATCCCCAAACTCCGC 60.440 66.667 0.00 0.00 0.00 5.54
868 956 2.354729 CCATCCCCAAACTCCGCA 59.645 61.111 0.00 0.00 0.00 5.69
869 957 1.750399 CCATCCCCAAACTCCGCAG 60.750 63.158 0.00 0.00 0.00 5.18
870 958 1.299648 CATCCCCAAACTCCGCAGA 59.700 57.895 0.00 0.00 0.00 4.26
871 959 0.322456 CATCCCCAAACTCCGCAGAA 60.322 55.000 0.00 0.00 0.00 3.02
872 960 0.322546 ATCCCCAAACTCCGCAGAAC 60.323 55.000 0.00 0.00 0.00 3.01
873 961 2.325082 CCCCAAACTCCGCAGAACG 61.325 63.158 0.00 0.00 43.15 3.95
874 962 2.556287 CCAAACTCCGCAGAACGC 59.444 61.111 0.00 0.00 41.76 4.84
875 963 2.250939 CCAAACTCCGCAGAACGCA 61.251 57.895 0.00 0.00 42.60 5.24
876 964 1.205064 CAAACTCCGCAGAACGCAG 59.795 57.895 0.00 0.00 42.60 5.18
877 965 1.961277 AAACTCCGCAGAACGCAGG 60.961 57.895 0.00 0.00 42.60 4.85
964 1060 3.199190 CGAGCGAGCGAGGAGTCT 61.199 66.667 0.00 0.00 0.00 3.24
1194 1290 2.829458 GTACGCGCCTCCTCCTCT 60.829 66.667 5.73 0.00 0.00 3.69
1203 1299 4.144727 TCCTCCTCTCCGCCCTCC 62.145 72.222 0.00 0.00 0.00 4.30
1214 1310 3.412408 GCCCTCCCTCCCACTTCC 61.412 72.222 0.00 0.00 0.00 3.46
1319 1430 1.072852 GGATCTGGATGCTGGAGCC 59.927 63.158 0.00 0.00 41.18 4.70
1320 1431 1.301558 GATCTGGATGCTGGAGCCG 60.302 63.158 0.00 0.00 41.18 5.52
1321 1432 2.728443 GATCTGGATGCTGGAGCCGG 62.728 65.000 5.87 5.87 41.18 6.13
1422 1538 2.746671 CCCAGAGTGCTGCTGCTG 60.747 66.667 17.00 6.37 40.91 4.41
1423 1539 3.432588 CCAGAGTGCTGCTGCTGC 61.433 66.667 22.51 22.51 40.91 5.25
1450 1568 0.837940 GCTTAGGAGGGTTGGTAGGG 59.162 60.000 0.00 0.00 0.00 3.53
1515 1633 6.262273 TGGAGTTCTCAAGTGAATTAACCAAC 59.738 38.462 2.24 0.00 0.00 3.77
1518 1636 6.486993 AGTTCTCAAGTGAATTAACCAACTCC 59.513 38.462 0.00 0.00 0.00 3.85
1521 1639 4.513692 TCAAGTGAATTAACCAACTCCACG 59.486 41.667 0.00 0.00 0.00 4.94
1546 1664 1.799933 TTGTTGGAGCATTTTGGGGT 58.200 45.000 0.00 0.00 0.00 4.95
1573 1691 3.316588 GTGATCTGCTTCTGAGATCGGTA 59.683 47.826 0.00 0.00 46.10 4.02
1574 1692 3.567585 TGATCTGCTTCTGAGATCGGTAG 59.432 47.826 0.00 0.00 46.10 3.18
1579 1697 2.029470 GCTTCTGAGATCGGTAGATGGG 60.029 54.545 0.00 2.44 37.19 4.00
1581 1699 1.203063 TCTGAGATCGGTAGATGGGGG 60.203 57.143 0.00 0.00 37.19 5.40
1582 1700 0.832135 TGAGATCGGTAGATGGGGGC 60.832 60.000 0.00 0.00 37.19 5.80
1583 1701 1.536662 AGATCGGTAGATGGGGGCC 60.537 63.158 0.00 0.00 37.19 5.80
1584 1702 1.841556 GATCGGTAGATGGGGGCCA 60.842 63.158 4.39 0.00 37.19 5.36
1586 1704 0.118346 ATCGGTAGATGGGGGCCATA 59.882 55.000 4.39 0.00 45.26 2.74
1587 1705 0.544357 TCGGTAGATGGGGGCCATAG 60.544 60.000 4.39 0.00 45.26 2.23
1588 1706 1.685820 GGTAGATGGGGGCCATAGC 59.314 63.158 4.39 0.00 45.26 2.97
1589 1707 0.842467 GGTAGATGGGGGCCATAGCT 60.842 60.000 4.39 3.80 45.26 3.32
1590 1708 1.068121 GTAGATGGGGGCCATAGCTT 58.932 55.000 4.39 0.00 45.26 3.74
1591 1709 2.266279 GTAGATGGGGGCCATAGCTTA 58.734 52.381 4.39 0.00 45.26 3.09
1592 1710 1.833187 AGATGGGGGCCATAGCTTAA 58.167 50.000 4.39 0.00 45.26 1.85
1593 1711 1.707427 AGATGGGGGCCATAGCTTAAG 59.293 52.381 4.39 0.00 45.26 1.85
1594 1712 0.113190 ATGGGGGCCATAGCTTAAGC 59.887 55.000 20.09 20.09 43.19 3.09
1595 1713 2.335311 ATGGGGGCCATAGCTTAAGCT 61.335 52.381 31.38 31.38 43.19 3.74
1643 1761 1.069906 CCTAGTTTGCTGCAACGACAC 60.070 52.381 15.72 10.60 0.00 3.67
1740 1858 7.988028 AGTGGCTAGTTTGAAATCCTATTCTAC 59.012 37.037 0.00 0.00 0.00 2.59
1769 1887 5.957798 TCACTGTACTAGTACCAAATTCGG 58.042 41.667 26.41 10.37 37.60 4.30
1782 1900 3.439129 CCAAATTCGGTCCTTAAGTGGTC 59.561 47.826 0.97 0.00 0.00 4.02
1822 1940 6.367969 GCTCTTATTTCACGAGGTTACTGAAA 59.632 38.462 0.00 1.11 38.07 2.69
1875 1993 3.660111 GTTGCCGTGCTGGTGTCC 61.660 66.667 0.00 0.00 41.21 4.02
1918 2036 5.342806 ACATGGTAATAATTGATCGCACG 57.657 39.130 0.00 0.00 0.00 5.34
1937 2055 3.247648 CACGACTTCATGTTTTCTCGGTT 59.752 43.478 0.00 0.00 0.00 4.44
2103 2221 1.071314 TGGGGTCCATTGTTGAGGGT 61.071 55.000 0.00 0.00 0.00 4.34
2135 2253 1.369091 AAGTTGATCATCCACGGCGC 61.369 55.000 6.90 0.00 0.00 6.53
2136 2254 2.513666 TTGATCATCCACGGCGCC 60.514 61.111 19.07 19.07 0.00 6.53
2154 2272 2.709475 GTTGCCGGAATAGCAGCG 59.291 61.111 5.05 0.00 42.17 5.18
2175 2293 2.892334 GCTTGCAACTTCGCCGACA 61.892 57.895 0.00 0.00 0.00 4.35
2424 2542 4.995487 AGTATCCTCTTGGTTGTTTTCGTC 59.005 41.667 0.00 0.00 34.23 4.20
2883 3001 8.021396 GGACTATTTTTCGCTGTCATAACTTTT 58.979 33.333 0.00 0.00 0.00 2.27
3024 3142 2.026262 GGTTGCTGTTCCTGAGGGATTA 60.026 50.000 0.00 0.00 41.87 1.75
3153 3271 3.133542 CCATCTGCAGTGATAAGACAGGA 59.866 47.826 14.67 0.00 0.00 3.86
3364 3482 0.328258 CCTTGGTACCCCAACAGAGG 59.672 60.000 10.07 1.76 45.93 3.69
3435 3553 2.095768 GCGTGCTGAAACTAAGATTGCA 60.096 45.455 0.00 0.00 0.00 4.08
3596 3714 4.534500 TGCTGTTACCCCTCTTGATAAAGA 59.466 41.667 0.00 0.00 0.00 2.52
3660 3778 4.623932 TGAAGCTCTTAGGACATTGTGT 57.376 40.909 0.00 0.00 0.00 3.72
3738 3856 4.705110 AGGGTACACATGCATTGCTATA 57.295 40.909 10.49 0.00 0.00 1.31
4029 4164 5.010820 CCATCTATCTGCAAGTCTCATCTCA 59.989 44.000 0.00 0.00 33.76 3.27
4239 4374 5.356470 GCTTGATCATTAAAGAGACCAAGCT 59.644 40.000 23.25 0.00 38.46 3.74
4251 4395 6.969993 AGAGACCAAGCTTAATCTACTAGG 57.030 41.667 10.77 2.40 0.00 3.02
4573 4717 5.245531 TCCTCAGCTTGTTTTACAGGTATG 58.754 41.667 0.00 0.00 0.00 2.39
4592 4736 5.717178 GGTATGCCTCCTAGTCTTGATGATA 59.283 44.000 0.00 0.00 0.00 2.15
4981 5125 4.017126 CTGTAAATCCCCTCTTTTCCACC 58.983 47.826 0.00 0.00 0.00 4.61
5004 5148 3.335579 GTGATGTGTTTACCAGGACCTC 58.664 50.000 0.00 0.00 0.00 3.85
5040 5184 3.056322 AGAAGGCAAGGCAATTTGTGATC 60.056 43.478 0.00 0.00 0.00 2.92
5041 5185 2.250031 AGGCAAGGCAATTTGTGATCA 58.750 42.857 0.00 0.00 0.00 2.92
5057 5201 6.078456 TGTGATCATTTCAAGAACCCCTAT 57.922 37.500 0.00 0.00 35.70 2.57
5060 5204 3.278574 TCATTTCAAGAACCCCTATGCG 58.721 45.455 0.00 0.00 0.00 4.73
5069 5213 1.451387 CCCCTATGCGGCGAACTTT 60.451 57.895 12.98 0.00 0.00 2.66
5128 5272 5.414765 AGTTAGGTAAATAAACACAGCTGGC 59.585 40.000 19.93 0.00 0.00 4.85
5152 5296 6.461509 GCAGAGGGTTAATATGAATTTGGTGG 60.462 42.308 0.00 0.00 0.00 4.61
5157 5309 5.977129 GGTTAATATGAATTTGGTGGAAGCG 59.023 40.000 0.00 0.00 36.92 4.68
5173 5325 0.460284 AGCGAAGGTGCATAGTTCGG 60.460 55.000 21.92 9.87 42.60 4.30
5332 5484 1.246056 TGCTCAAGGGCATGCTGAAC 61.246 55.000 18.92 9.59 37.29 3.18
5443 5595 1.188219 TCACCAGTCTCCAGTGGCTC 61.188 60.000 3.51 0.00 46.27 4.70
5464 5616 3.958860 AGCGTGCTCCTTGGCCTT 61.959 61.111 3.32 0.00 0.00 4.35
5503 5655 0.108804 TCGTCGTCAAGCTCATTCCC 60.109 55.000 0.00 0.00 0.00 3.97
5506 5658 1.135199 GTCGTCAAGCTCATTCCCGTA 60.135 52.381 0.00 0.00 0.00 4.02
5563 5715 0.534203 GGAGGTGTGGCGAAAAGACA 60.534 55.000 0.00 0.00 33.74 3.41
5874 6027 1.689273 GCATATGACCGAGACCTTCCT 59.311 52.381 6.97 0.00 0.00 3.36
5899 6052 1.227380 GGGCGCATGTAGTCCAGAG 60.227 63.158 10.83 0.00 0.00 3.35
5984 6150 8.223378 AGATGGTCCCAAATTGATATGAGATA 57.777 34.615 0.00 0.00 0.00 1.98
5985 6151 8.843773 AGATGGTCCCAAATTGATATGAGATAT 58.156 33.333 0.00 0.00 0.00 1.63
5986 6152 9.471702 GATGGTCCCAAATTGATATGAGATATT 57.528 33.333 0.00 0.00 0.00 1.28
5987 6153 9.833179 ATGGTCCCAAATTGATATGAGATATTT 57.167 29.630 0.00 0.00 0.00 1.40
5988 6154 9.659135 TGGTCCCAAATTGATATGAGATATTTT 57.341 29.630 0.00 0.00 0.00 1.82
6136 6302 9.825972 CATAAATATTACCATTGATCGACCAAC 57.174 33.333 0.00 0.00 0.00 3.77
6172 6338 3.129638 CACTCCTCTTACCTCTTCGAAGG 59.870 52.174 24.37 13.42 42.55 3.46
6181 6347 2.025898 CCTCTTCGAAGGTACTCCCTC 58.974 57.143 24.37 0.00 45.47 4.30
6182 6348 2.357361 CCTCTTCGAAGGTACTCCCTCT 60.357 54.545 24.37 0.00 45.47 3.69
6183 6349 2.685897 CTCTTCGAAGGTACTCCCTCTG 59.314 54.545 24.37 0.00 45.47 3.35
6184 6350 2.041350 TCTTCGAAGGTACTCCCTCTGT 59.959 50.000 24.37 0.00 45.47 3.41
6185 6351 2.599408 TCGAAGGTACTCCCTCTGTT 57.401 50.000 0.00 0.00 45.47 3.16
6186 6352 2.444421 TCGAAGGTACTCCCTCTGTTC 58.556 52.381 0.00 0.00 45.47 3.18
6187 6353 1.477295 CGAAGGTACTCCCTCTGTTCC 59.523 57.143 0.00 0.00 45.47 3.62
6188 6354 1.477295 GAAGGTACTCCCTCTGTTCCG 59.523 57.143 0.00 0.00 45.47 4.30
6189 6355 0.702902 AGGTACTCCCTCTGTTCCGA 59.297 55.000 0.00 0.00 40.71 4.55
6190 6356 1.076677 AGGTACTCCCTCTGTTCCGAA 59.923 52.381 0.00 0.00 40.71 4.30
6191 6357 2.108970 GGTACTCCCTCTGTTCCGAAT 58.891 52.381 0.00 0.00 0.00 3.34
6192 6358 2.500504 GGTACTCCCTCTGTTCCGAATT 59.499 50.000 0.00 0.00 0.00 2.17
6193 6359 3.703052 GGTACTCCCTCTGTTCCGAATTA 59.297 47.826 0.00 0.00 0.00 1.40
6194 6360 3.889520 ACTCCCTCTGTTCCGAATTAC 57.110 47.619 0.00 0.00 0.00 1.89
6195 6361 3.442076 ACTCCCTCTGTTCCGAATTACT 58.558 45.455 0.00 0.00 0.00 2.24
6196 6362 3.838903 ACTCCCTCTGTTCCGAATTACTT 59.161 43.478 0.00 0.00 0.00 2.24
6197 6363 4.184629 CTCCCTCTGTTCCGAATTACTTG 58.815 47.826 0.00 0.00 0.00 3.16
6198 6364 3.581332 TCCCTCTGTTCCGAATTACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
6199 6365 3.933332 CCCTCTGTTCCGAATTACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
6200 6366 4.322801 CCCTCTGTTCCGAATTACTTGTCT 60.323 45.833 0.00 0.00 0.00 3.41
6201 6367 5.238583 CCTCTGTTCCGAATTACTTGTCTT 58.761 41.667 0.00 0.00 0.00 3.01
6202 6368 6.395629 CCTCTGTTCCGAATTACTTGTCTTA 58.604 40.000 0.00 0.00 0.00 2.10
6203 6369 6.531948 CCTCTGTTCCGAATTACTTGTCTTAG 59.468 42.308 0.00 0.00 0.00 2.18
6204 6370 7.223260 TCTGTTCCGAATTACTTGTCTTAGA 57.777 36.000 0.00 0.00 0.00 2.10
6205 6371 7.837863 TCTGTTCCGAATTACTTGTCTTAGAT 58.162 34.615 0.00 0.00 0.00 1.98
6206 6372 8.311836 TCTGTTCCGAATTACTTGTCTTAGATT 58.688 33.333 0.00 0.00 0.00 2.40
6207 6373 8.842358 TGTTCCGAATTACTTGTCTTAGATTT 57.158 30.769 0.00 0.00 0.00 2.17
6208 6374 8.717821 TGTTCCGAATTACTTGTCTTAGATTTG 58.282 33.333 0.00 0.00 0.00 2.32
6209 6375 8.718734 GTTCCGAATTACTTGTCTTAGATTTGT 58.281 33.333 0.00 0.00 0.00 2.83
6210 6376 8.475331 TCCGAATTACTTGTCTTAGATTTGTC 57.525 34.615 0.00 0.00 0.00 3.18
6211 6377 8.311836 TCCGAATTACTTGTCTTAGATTTGTCT 58.688 33.333 0.00 0.00 0.00 3.41
6212 6378 9.582431 CCGAATTACTTGTCTTAGATTTGTCTA 57.418 33.333 0.00 0.00 0.00 2.59
6219 6385 8.407064 ACTTGTCTTAGATTTGTCTAGATACGG 58.593 37.037 0.00 0.00 0.00 4.02
6220 6386 8.515695 TTGTCTTAGATTTGTCTAGATACGGA 57.484 34.615 0.00 0.00 0.00 4.69
6221 6387 8.155821 TGTCTTAGATTTGTCTAGATACGGAG 57.844 38.462 0.00 0.00 0.00 4.63
6222 6388 7.228906 TGTCTTAGATTTGTCTAGATACGGAGG 59.771 40.741 0.00 0.00 0.00 4.30
6223 6389 7.229106 GTCTTAGATTTGTCTAGATACGGAGGT 59.771 40.741 0.00 0.00 0.00 3.85
6224 6390 8.435187 TCTTAGATTTGTCTAGATACGGAGGTA 58.565 37.037 0.00 0.00 0.00 3.08
6225 6391 9.233649 CTTAGATTTGTCTAGATACGGAGGTAT 57.766 37.037 0.00 0.00 42.01 2.73
6238 6404 7.778185 ATACGGAGGTATCTAGCACTAAAAT 57.222 36.000 0.00 0.00 34.18 1.82
6239 6405 5.844004 ACGGAGGTATCTAGCACTAAAATG 58.156 41.667 0.00 0.00 0.00 2.32
6240 6406 5.597182 ACGGAGGTATCTAGCACTAAAATGA 59.403 40.000 0.00 0.00 0.00 2.57
6241 6407 6.153067 CGGAGGTATCTAGCACTAAAATGAG 58.847 44.000 0.00 0.00 0.00 2.90
6242 6408 6.239064 CGGAGGTATCTAGCACTAAAATGAGT 60.239 42.308 0.00 0.00 0.00 3.41
6243 6409 7.149307 GGAGGTATCTAGCACTAAAATGAGTC 58.851 42.308 0.00 0.00 0.00 3.36
6244 6410 7.014808 GGAGGTATCTAGCACTAAAATGAGTCT 59.985 40.741 0.00 0.00 0.00 3.24
6245 6411 8.998277 AGGTATCTAGCACTAAAATGAGTCTA 57.002 34.615 0.00 0.00 0.00 2.59
6246 6412 9.073475 AGGTATCTAGCACTAAAATGAGTCTAG 57.927 37.037 0.00 0.00 33.29 2.43
6247 6413 9.069082 GGTATCTAGCACTAAAATGAGTCTAGA 57.931 37.037 11.59 11.59 38.76 2.43
6251 6417 9.628500 TCTAGCACTAAAATGAGTCTAGATACA 57.372 33.333 0.00 0.00 34.65 2.29
6254 6420 9.142014 AGCACTAAAATGAGTCTAGATACATCT 57.858 33.333 12.66 0.00 40.86 2.90
6255 6421 9.190858 GCACTAAAATGAGTCTAGATACATCTG 57.809 37.037 12.66 7.80 37.76 2.90
6274 6440 7.851228 ACATCTGTATGTAGACAAATCCAAGA 58.149 34.615 0.00 0.00 44.66 3.02
6275 6441 7.766278 ACATCTGTATGTAGACAAATCCAAGAC 59.234 37.037 0.00 0.00 44.66 3.01
6276 6442 7.239763 TCTGTATGTAGACAAATCCAAGACA 57.760 36.000 0.00 0.00 0.00 3.41
6277 6443 7.676004 TCTGTATGTAGACAAATCCAAGACAA 58.324 34.615 0.00 0.00 0.00 3.18
6278 6444 7.819415 TCTGTATGTAGACAAATCCAAGACAAG 59.181 37.037 0.00 0.00 0.00 3.16
6279 6445 7.450074 TGTATGTAGACAAATCCAAGACAAGT 58.550 34.615 0.00 0.00 0.00 3.16
6280 6446 8.590204 TGTATGTAGACAAATCCAAGACAAGTA 58.410 33.333 0.00 0.00 0.00 2.24
6281 6447 9.431887 GTATGTAGACAAATCCAAGACAAGTAA 57.568 33.333 0.00 0.00 0.00 2.24
6283 6449 8.918202 TGTAGACAAATCCAAGACAAGTAATT 57.082 30.769 0.00 0.00 0.00 1.40
6284 6450 8.999431 TGTAGACAAATCCAAGACAAGTAATTC 58.001 33.333 0.00 0.00 0.00 2.17
6285 6451 7.133891 AGACAAATCCAAGACAAGTAATTCG 57.866 36.000 0.00 0.00 0.00 3.34
6286 6452 6.149474 AGACAAATCCAAGACAAGTAATTCGG 59.851 38.462 0.00 0.00 0.00 4.30
6287 6453 6.001460 ACAAATCCAAGACAAGTAATTCGGA 58.999 36.000 0.00 0.00 0.00 4.55
6288 6454 6.488683 ACAAATCCAAGACAAGTAATTCGGAA 59.511 34.615 0.00 0.00 0.00 4.30
6289 6455 6.496338 AATCCAAGACAAGTAATTCGGAAC 57.504 37.500 0.00 0.00 0.00 3.62
6351 8629 8.645487 GTTCTTAGTTATTACTTCCGTTCACTG 58.355 37.037 0.00 0.00 35.78 3.66
6353 8631 4.890088 AGTTATTACTTCCGTTCACTGCA 58.110 39.130 0.00 0.00 0.00 4.41
6443 8803 8.571336 GTTTTGGATTTGTCTAGATATGGATGG 58.429 37.037 0.00 0.00 0.00 3.51
6474 8834 7.256286 ACACTAAAACGTGTCTAGATACATCC 58.744 38.462 18.39 0.00 44.32 3.51
6475 8835 7.094075 ACACTAAAACGTGTCTAGATACATCCA 60.094 37.037 18.39 0.00 44.32 3.41
6481 8841 5.354513 ACGTGTCTAGATACATCCATATCCG 59.645 44.000 18.39 4.27 32.76 4.18
6517 8877 3.670625 TGAGTCAACTAATTTGGGACGG 58.329 45.455 0.00 0.00 35.69 4.79
6518 8878 3.325425 TGAGTCAACTAATTTGGGACGGA 59.675 43.478 0.00 0.00 35.69 4.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.480845 ACTAAGGCACACGAGAAACAC 58.519 47.619 0.00 0.00 0.00 3.32
2 3 3.673809 CAGTACTAAGGCACACGAGAAAC 59.326 47.826 0.00 0.00 0.00 2.78
3 4 3.319972 ACAGTACTAAGGCACACGAGAAA 59.680 43.478 0.00 0.00 0.00 2.52
5 6 2.511659 ACAGTACTAAGGCACACGAGA 58.488 47.619 0.00 0.00 0.00 4.04
7 8 3.365264 CGTTACAGTACTAAGGCACACGA 60.365 47.826 0.00 0.00 0.00 4.35
8 9 2.912967 CGTTACAGTACTAAGGCACACG 59.087 50.000 0.00 0.00 0.00 4.49
9 10 4.164822 TCGTTACAGTACTAAGGCACAC 57.835 45.455 0.00 0.00 0.00 3.82
10 11 4.037803 TGTTCGTTACAGTACTAAGGCACA 59.962 41.667 0.00 0.00 31.68 4.57
11 12 4.549458 TGTTCGTTACAGTACTAAGGCAC 58.451 43.478 0.00 0.00 31.68 5.01
12 13 4.852134 TGTTCGTTACAGTACTAAGGCA 57.148 40.909 0.00 0.00 31.68 4.75
13 14 6.474751 CCTAATGTTCGTTACAGTACTAAGGC 59.525 42.308 0.00 0.00 40.83 4.35
14 15 6.474751 GCCTAATGTTCGTTACAGTACTAAGG 59.525 42.308 0.00 0.00 40.83 2.69
15 16 6.195983 CGCCTAATGTTCGTTACAGTACTAAG 59.804 42.308 0.00 0.00 40.83 2.18
16 17 6.029607 CGCCTAATGTTCGTTACAGTACTAA 58.970 40.000 0.00 0.00 40.83 2.24
17 18 5.572211 CGCCTAATGTTCGTTACAGTACTA 58.428 41.667 0.00 0.00 40.83 1.82
18 19 4.418392 CGCCTAATGTTCGTTACAGTACT 58.582 43.478 0.00 0.00 40.83 2.73
19 20 3.000376 GCGCCTAATGTTCGTTACAGTAC 60.000 47.826 0.00 0.00 40.83 2.73
20 21 3.181397 GCGCCTAATGTTCGTTACAGTA 58.819 45.455 0.00 1.18 40.83 2.74
21 22 1.997606 GCGCCTAATGTTCGTTACAGT 59.002 47.619 0.00 0.12 40.83 3.55
22 23 1.326548 GGCGCCTAATGTTCGTTACAG 59.673 52.381 22.15 0.00 40.83 2.74
23 24 1.361793 GGCGCCTAATGTTCGTTACA 58.638 50.000 22.15 0.00 41.97 2.41
34 35 0.178987 TTTGTGAAAGGGGCGCCTAA 60.179 50.000 28.56 10.44 0.00 2.69
65 66 6.732487 AGATCACTCTCCCCATATCGTATTA 58.268 40.000 0.00 0.00 0.00 0.98
75 76 5.072741 CAAAAAGAAAGATCACTCTCCCCA 58.927 41.667 0.00 0.00 0.00 4.96
77 78 5.073428 ACCAAAAAGAAAGATCACTCTCCC 58.927 41.667 0.00 0.00 0.00 4.30
82 83 6.830838 AGTCTCAACCAAAAAGAAAGATCACT 59.169 34.615 0.00 0.00 0.00 3.41
84 85 6.828273 TCAGTCTCAACCAAAAAGAAAGATCA 59.172 34.615 0.00 0.00 0.00 2.92
85 86 7.264373 TCAGTCTCAACCAAAAAGAAAGATC 57.736 36.000 0.00 0.00 0.00 2.75
86 87 7.830099 ATCAGTCTCAACCAAAAAGAAAGAT 57.170 32.000 0.00 0.00 0.00 2.40
88 89 7.308830 CCCTATCAGTCTCAACCAAAAAGAAAG 60.309 40.741 0.00 0.00 0.00 2.62
91 92 5.514834 CCCCTATCAGTCTCAACCAAAAAGA 60.515 44.000 0.00 0.00 0.00 2.52
92 93 4.702131 CCCCTATCAGTCTCAACCAAAAAG 59.298 45.833 0.00 0.00 0.00 2.27
140 141 3.691575 TGGGTCACTCAACTCACAAAAA 58.308 40.909 0.00 0.00 0.00 1.94
141 142 3.054728 TCTGGGTCACTCAACTCACAAAA 60.055 43.478 0.00 0.00 0.00 2.44
142 143 2.503765 TCTGGGTCACTCAACTCACAAA 59.496 45.455 0.00 0.00 0.00 2.83
304 305 4.607557 CGCGTGATAAGACAAAACGAAACT 60.608 41.667 0.00 0.00 36.38 2.66
306 307 3.245754 ACGCGTGATAAGACAAAACGAAA 59.754 39.130 12.93 0.00 36.38 3.46
319 320 0.038618 ACAAGCACAGACGCGTGATA 60.039 50.000 20.70 0.00 43.05 2.15
330 331 7.229707 ACAAGGTGTATATTTTGTACAAGCACA 59.770 33.333 8.56 6.98 34.15 4.57
338 339 9.685828 GCAAAGAAACAAGGTGTATATTTTGTA 57.314 29.630 0.00 0.00 33.70 2.41
339 340 8.421002 AGCAAAGAAACAAGGTGTATATTTTGT 58.579 29.630 0.00 0.00 35.43 2.83
350 351 3.004734 CGAATGGAGCAAAGAAACAAGGT 59.995 43.478 0.00 0.00 0.00 3.50
351 352 3.568538 CGAATGGAGCAAAGAAACAAGG 58.431 45.455 0.00 0.00 0.00 3.61
353 354 2.622942 AGCGAATGGAGCAAAGAAACAA 59.377 40.909 0.00 0.00 37.01 2.83
455 469 5.645067 AGATGGCATGTATTGATAACATCGG 59.355 40.000 3.81 0.00 38.68 4.18
457 471 7.823310 AGAGAGATGGCATGTATTGATAACATC 59.177 37.037 3.81 0.00 35.39 3.06
462 476 7.341512 CCTAGAGAGAGATGGCATGTATTGATA 59.658 40.741 3.81 0.00 0.00 2.15
466 480 5.401750 ACCTAGAGAGAGATGGCATGTATT 58.598 41.667 3.81 0.00 0.00 1.89
523 587 9.199184 CGTATATGTGAATTAATTAATGCTCGC 57.801 33.333 15.77 14.33 0.00 5.03
526 590 7.692291 GCGCGTATATGTGAATTAATTAATGCT 59.308 33.333 15.77 0.40 0.00 3.79
536 600 1.860676 ACGGCGCGTATATGTGAATT 58.139 45.000 6.90 0.00 38.73 2.17
537 601 2.710220 TACGGCGCGTATATGTGAAT 57.290 45.000 6.90 0.00 41.54 2.57
569 633 4.542697 ACAAGGAAGGTGCCTTTTAGAAA 58.457 39.130 4.83 0.00 45.85 2.52
570 634 4.178956 ACAAGGAAGGTGCCTTTTAGAA 57.821 40.909 4.83 0.00 45.85 2.10
571 635 3.876309 ACAAGGAAGGTGCCTTTTAGA 57.124 42.857 4.83 0.00 45.85 2.10
572 636 3.756963 GGTACAAGGAAGGTGCCTTTTAG 59.243 47.826 4.83 0.00 45.85 1.85
573 637 3.758425 GGTACAAGGAAGGTGCCTTTTA 58.242 45.455 4.83 0.00 45.85 1.52
593 657 6.787085 AGTATCTGAGAACAAAAACGAAGG 57.213 37.500 0.00 0.00 0.00 3.46
610 674 4.651503 ACTAGTGCTGCCAATGTAGTATCT 59.348 41.667 0.00 0.00 0.00 1.98
612 676 4.405680 TCACTAGTGCTGCCAATGTAGTAT 59.594 41.667 18.45 0.00 0.00 2.12
613 677 3.767131 TCACTAGTGCTGCCAATGTAGTA 59.233 43.478 18.45 0.00 0.00 1.82
614 678 2.567169 TCACTAGTGCTGCCAATGTAGT 59.433 45.455 18.45 0.00 0.00 2.73
615 679 2.932614 GTCACTAGTGCTGCCAATGTAG 59.067 50.000 18.45 0.00 0.00 2.74
715 779 6.765036 TGTATACGTACCGAGAGAGAGAAATT 59.235 38.462 0.00 0.00 0.00 1.82
725 789 1.881973 GGCCATGTATACGTACCGAGA 59.118 52.381 0.00 0.00 0.00 4.04
726 790 1.400629 CGGCCATGTATACGTACCGAG 60.401 57.143 24.38 3.36 41.61 4.63
728 792 0.387622 CCGGCCATGTATACGTACCG 60.388 60.000 22.81 22.81 38.88 4.02
729 793 0.675633 ACCGGCCATGTATACGTACC 59.324 55.000 0.00 2.05 0.00 3.34
735 799 1.067974 CGAAGTCACCGGCCATGTATA 59.932 52.381 0.00 0.00 0.00 1.47
736 800 0.179084 CGAAGTCACCGGCCATGTAT 60.179 55.000 0.00 0.00 0.00 2.29
737 801 1.216977 CGAAGTCACCGGCCATGTA 59.783 57.895 0.00 0.00 0.00 2.29
738 802 2.047274 CGAAGTCACCGGCCATGT 60.047 61.111 0.00 0.00 0.00 3.21
739 803 2.819595 CCGAAGTCACCGGCCATG 60.820 66.667 0.00 0.00 40.54 3.66
740 804 4.096003 CCCGAAGTCACCGGCCAT 62.096 66.667 0.00 0.00 45.24 4.40
743 807 2.125793 GTACCCGAAGTCACCGGC 60.126 66.667 0.00 0.00 45.24 6.13
745 809 2.064014 GAAAAGTACCCGAAGTCACCG 58.936 52.381 0.00 0.00 0.00 4.94
747 811 5.131594 AGTAGAAAAGTACCCGAAGTCAC 57.868 43.478 0.00 0.00 0.00 3.67
748 812 4.083110 CGAGTAGAAAAGTACCCGAAGTCA 60.083 45.833 0.00 0.00 0.00 3.41
844 932 0.776080 AGTTTGGGGATGGGGAGTGT 60.776 55.000 0.00 0.00 0.00 3.55
846 934 1.214992 GGAGTTTGGGGATGGGGAGT 61.215 60.000 0.00 0.00 0.00 3.85
848 936 2.305607 CGGAGTTTGGGGATGGGGA 61.306 63.158 0.00 0.00 0.00 4.81
849 937 2.275418 CGGAGTTTGGGGATGGGG 59.725 66.667 0.00 0.00 0.00 4.96
850 938 2.440247 GCGGAGTTTGGGGATGGG 60.440 66.667 0.00 0.00 0.00 4.00
853 941 0.322546 GTTCTGCGGAGTTTGGGGAT 60.323 55.000 3.10 0.00 0.00 3.85
854 942 1.072505 GTTCTGCGGAGTTTGGGGA 59.927 57.895 3.10 0.00 0.00 4.81
857 945 2.556287 GCGTTCTGCGGAGTTTGG 59.444 61.111 3.10 0.00 41.69 3.28
866 954 1.658409 GTTTGTGCCTGCGTTCTGC 60.658 57.895 0.00 0.00 46.70 4.26
867 955 1.008538 GGTTTGTGCCTGCGTTCTG 60.009 57.895 0.00 0.00 0.00 3.02
868 956 2.193536 GGGTTTGTGCCTGCGTTCT 61.194 57.895 0.00 0.00 0.00 3.01
869 957 2.010582 TTGGGTTTGTGCCTGCGTTC 62.011 55.000 0.00 0.00 0.00 3.95
870 958 2.055042 TTGGGTTTGTGCCTGCGTT 61.055 52.632 0.00 0.00 0.00 4.84
871 959 2.441164 TTGGGTTTGTGCCTGCGT 60.441 55.556 0.00 0.00 0.00 5.24
872 960 2.027460 GTTGGGTTTGTGCCTGCG 59.973 61.111 0.00 0.00 0.00 5.18
873 961 1.965754 TTGGTTGGGTTTGTGCCTGC 61.966 55.000 0.00 0.00 0.00 4.85
874 962 0.179086 GTTGGTTGGGTTTGTGCCTG 60.179 55.000 0.00 0.00 0.00 4.85
875 963 1.671901 CGTTGGTTGGGTTTGTGCCT 61.672 55.000 0.00 0.00 0.00 4.75
876 964 1.227118 CGTTGGTTGGGTTTGTGCC 60.227 57.895 0.00 0.00 0.00 5.01
877 965 1.880796 GCGTTGGTTGGGTTTGTGC 60.881 57.895 0.00 0.00 0.00 4.57
997 1093 0.105453 TCCAGGTAGCTCTCCATCCC 60.105 60.000 9.97 0.00 0.00 3.85
1197 1293 3.412408 GGAAGTGGGAGGGAGGGC 61.412 72.222 0.00 0.00 0.00 5.19
1203 1299 3.710722 AGCAGCGGAAGTGGGAGG 61.711 66.667 0.00 0.00 0.00 4.30
1377 1488 3.636153 AGCTAAATCTTGGTGGAGGAC 57.364 47.619 0.00 0.00 0.00 3.85
1423 1539 3.070302 CCAACCCTCCTAAGCTAAGCTAG 59.930 52.174 0.00 0.00 38.25 3.42
1450 1568 1.375523 CCGGTCACTGGGCTACAAC 60.376 63.158 0.00 0.00 0.00 3.32
1515 1633 1.333619 CTCCAACAAAACACCGTGGAG 59.666 52.381 3.03 3.76 36.03 3.86
1518 1636 0.453793 TGCTCCAACAAAACACCGTG 59.546 50.000 0.00 0.00 0.00 4.94
1521 1639 3.312146 CCAAAATGCTCCAACAAAACACC 59.688 43.478 0.00 0.00 0.00 4.16
1546 1664 5.506982 CGATCTCAGAAGCAGATCACATACA 60.507 44.000 10.57 0.00 44.61 2.29
1573 1691 1.707427 CTTAAGCTATGGCCCCCATCT 59.293 52.381 0.00 0.00 40.74 2.90
1574 1692 1.888391 GCTTAAGCTATGGCCCCCATC 60.888 57.143 20.38 0.00 43.99 3.51
1587 1705 4.176271 CCAAATTGGCACTAAGCTTAAGC 58.824 43.478 20.09 20.09 44.79 3.09
1615 1733 1.303643 AGCAAACTAGGCACTGGGC 60.304 57.895 0.00 0.00 43.06 5.36
1617 1735 0.890542 TGCAGCAAACTAGGCACTGG 60.891 55.000 0.00 0.00 44.86 4.00
1618 1736 0.953727 TTGCAGCAAACTAGGCACTG 59.046 50.000 4.99 0.00 41.52 3.66
1619 1737 0.954452 GTTGCAGCAAACTAGGCACT 59.046 50.000 10.11 0.00 46.37 4.40
1620 1738 0.385974 CGTTGCAGCAAACTAGGCAC 60.386 55.000 10.11 0.00 35.74 5.01
1643 1761 5.633830 AACAGTGCAAAGAAGTCATATGG 57.366 39.130 2.13 0.00 0.00 2.74
1809 1927 6.851222 ATAGCATGAATTTCAGTAACCTCG 57.149 37.500 5.21 0.00 0.00 4.63
1822 1940 5.298527 CCTGTCACACATCAATAGCATGAAT 59.701 40.000 0.00 0.00 32.06 2.57
1913 2031 2.718789 CGAGAAAACATGAAGTCGTGCG 60.719 50.000 0.00 0.00 36.36 5.34
1918 2036 4.813296 ACAACCGAGAAAACATGAAGTC 57.187 40.909 0.00 0.00 0.00 3.01
1965 2083 6.860023 CAGTGGCACGGTTATATACTAGTAAC 59.140 42.308 12.71 2.10 0.00 2.50
1966 2084 6.772233 TCAGTGGCACGGTTATATACTAGTAA 59.228 38.462 17.16 0.00 0.00 2.24
1967 2085 6.205464 GTCAGTGGCACGGTTATATACTAGTA 59.795 42.308 17.16 4.77 0.00 1.82
1968 2086 5.009410 GTCAGTGGCACGGTTATATACTAGT 59.991 44.000 17.16 0.00 0.00 2.57
1969 2087 5.009310 TGTCAGTGGCACGGTTATATACTAG 59.991 44.000 17.16 0.00 0.00 2.57
1970 2088 4.888823 TGTCAGTGGCACGGTTATATACTA 59.111 41.667 17.16 0.00 0.00 1.82
1971 2089 3.702548 TGTCAGTGGCACGGTTATATACT 59.297 43.478 17.16 0.00 0.00 2.12
1972 2090 4.049546 TGTCAGTGGCACGGTTATATAC 57.950 45.455 17.16 7.74 0.00 1.47
1973 2091 4.739587 TTGTCAGTGGCACGGTTATATA 57.260 40.909 17.16 0.00 0.00 0.86
1974 2092 3.620427 TTGTCAGTGGCACGGTTATAT 57.380 42.857 17.16 0.00 0.00 0.86
1975 2093 3.068560 GTTTGTCAGTGGCACGGTTATA 58.931 45.455 17.16 0.00 0.00 0.98
1976 2094 1.877443 GTTTGTCAGTGGCACGGTTAT 59.123 47.619 17.16 0.00 0.00 1.89
2103 2221 7.665145 TGGATGATCAACTTTTTACTGTCATGA 59.335 33.333 0.00 0.00 0.00 3.07
2154 2272 1.441016 CGGCGAAGTTGCAAGCTTC 60.441 57.895 21.80 21.80 39.03 3.86
2193 2311 2.889154 TACGCTGCATGCTGTCCTCG 62.889 60.000 23.42 19.66 40.11 4.63
2424 2542 1.269166 GATAGTCACTTGTCGCGGTG 58.731 55.000 6.13 6.58 35.06 4.94
2883 3001 5.988310 TTAACCCTTGAGACAAGACGATA 57.012 39.130 12.25 0.60 0.00 2.92
3024 3142 1.620819 CTCAGTGTGACTGCTAAGGGT 59.379 52.381 0.00 0.00 45.54 4.34
3153 3271 9.944376 ACAGTCATATGATTAGTTGTTAGTGTT 57.056 29.630 9.02 0.00 0.00 3.32
3364 3482 1.477700 TGCAAACTCCAATATGGCTGC 59.522 47.619 0.00 0.00 37.47 5.25
3435 3553 5.104982 TGTTGAATTGAAAGGCTCCACTTTT 60.105 36.000 0.00 0.00 40.55 2.27
3660 3778 4.042809 TCTTCCATTTCCCTGTAAGCAAGA 59.957 41.667 0.00 0.00 0.00 3.02
3738 3856 6.462628 GGCGAACAGGATCTTTAATACCTACT 60.463 42.308 0.00 0.00 0.00 2.57
3860 3978 7.423844 TCTTCAGTGAGTATACCACATTCAT 57.576 36.000 19.93 3.60 37.01 2.57
4001 4136 6.544928 TGAGACTTGCAGATAGATGGTAAA 57.455 37.500 0.00 0.00 0.00 2.01
4029 4164 7.040686 GCCATTACCTTCAATACACGGAATTAT 60.041 37.037 0.00 0.00 0.00 1.28
4239 4374 9.750783 GGTATGATACACCTCCTAGTAGATTAA 57.249 37.037 4.83 0.00 32.98 1.40
4251 4395 7.781548 AAAACAATACGGTATGATACACCTC 57.218 36.000 4.83 0.00 33.62 3.85
4573 4717 5.069781 ACAAGTATCATCAAGACTAGGAGGC 59.930 44.000 0.00 0.00 0.00 4.70
4592 4736 6.672657 AGGGTATGTCATAGGAAGTAACAAGT 59.327 38.462 0.00 0.00 0.00 3.16
4981 5125 2.073816 GTCCTGGTAAACACATCACCG 58.926 52.381 0.00 0.00 34.94 4.94
5040 5184 2.358898 CCGCATAGGGGTTCTTGAAATG 59.641 50.000 0.00 0.00 35.97 2.32
5041 5185 2.654863 CCGCATAGGGGTTCTTGAAAT 58.345 47.619 0.00 0.00 35.97 2.17
5082 5226 6.820335 ACTATCAGAGCATTACACTATTGCA 58.180 36.000 0.00 0.00 37.48 4.08
5128 5272 6.833416 TCCACCAAATTCATATTAACCCTCTG 59.167 38.462 0.00 0.00 0.00 3.35
5152 5296 1.324736 CGAACTATGCACCTTCGCTTC 59.675 52.381 8.74 0.00 31.26 3.86
5157 5309 1.331756 CATGCCGAACTATGCACCTTC 59.668 52.381 0.00 0.00 40.88 3.46
5173 5325 0.239347 GACACAACAGGTCTGCATGC 59.761 55.000 11.82 11.82 32.54 4.06
5332 5484 5.240891 AGGACACACATGAAGACATAGTTG 58.759 41.667 0.00 0.00 35.09 3.16
5503 5655 3.887621 TTTCATCAGGAAGACCCTACG 57.112 47.619 0.00 0.00 45.60 3.51
5512 5664 2.247358 GGTTGCCCTTTTCATCAGGAA 58.753 47.619 0.00 0.00 32.41 3.36
5874 6027 1.152984 CTACATGCGCCCCATTCCA 60.153 57.895 4.18 0.00 29.71 3.53
5899 6052 5.086104 TCCAACATAAGGCACTAGTTCTC 57.914 43.478 0.00 0.00 38.49 2.87
5990 6156 9.378551 GTAGGTTAATCACAGAATACAACATCA 57.621 33.333 0.00 0.00 0.00 3.07
5991 6157 9.378551 TGTAGGTTAATCACAGAATACAACATC 57.621 33.333 0.00 0.00 0.00 3.06
5992 6158 9.905713 ATGTAGGTTAATCACAGAATACAACAT 57.094 29.630 0.00 0.00 0.00 2.71
5993 6159 9.161629 CATGTAGGTTAATCACAGAATACAACA 57.838 33.333 0.00 0.00 0.00 3.33
5997 6163 7.786178 TGCATGTAGGTTAATCACAGAATAC 57.214 36.000 0.00 0.00 0.00 1.89
6136 6302 3.629398 AGAGGAGTGTTTGCTCAAAACTG 59.371 43.478 11.81 0.00 45.94 3.16
6172 6338 3.889520 AATTCGGAACAGAGGGAGTAC 57.110 47.619 0.00 0.00 0.00 2.73
6173 6339 4.607239 AGTAATTCGGAACAGAGGGAGTA 58.393 43.478 0.00 0.00 0.00 2.59
6174 6340 3.442076 AGTAATTCGGAACAGAGGGAGT 58.558 45.455 0.00 0.00 0.00 3.85
6175 6341 4.184629 CAAGTAATTCGGAACAGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
6176 6342 3.581332 ACAAGTAATTCGGAACAGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
6177 6343 3.933332 GACAAGTAATTCGGAACAGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
6178 6344 4.822026 AGACAAGTAATTCGGAACAGAGG 58.178 43.478 0.00 0.00 0.00 3.69
6179 6345 7.313646 TCTAAGACAAGTAATTCGGAACAGAG 58.686 38.462 0.00 0.00 0.00 3.35
6180 6346 7.223260 TCTAAGACAAGTAATTCGGAACAGA 57.777 36.000 0.00 0.00 0.00 3.41
6181 6347 8.480643 AATCTAAGACAAGTAATTCGGAACAG 57.519 34.615 0.00 0.00 0.00 3.16
6182 6348 8.717821 CAAATCTAAGACAAGTAATTCGGAACA 58.282 33.333 0.00 0.00 0.00 3.18
6183 6349 8.718734 ACAAATCTAAGACAAGTAATTCGGAAC 58.281 33.333 0.00 0.00 0.00 3.62
6184 6350 8.842358 ACAAATCTAAGACAAGTAATTCGGAA 57.158 30.769 0.00 0.00 0.00 4.30
6185 6351 8.311836 AGACAAATCTAAGACAAGTAATTCGGA 58.688 33.333 0.00 0.00 31.46 4.55
6186 6352 8.480643 AGACAAATCTAAGACAAGTAATTCGG 57.519 34.615 0.00 0.00 31.46 4.30
6193 6359 8.407064 CCGTATCTAGACAAATCTAAGACAAGT 58.593 37.037 0.00 0.00 36.98 3.16
6194 6360 8.622157 TCCGTATCTAGACAAATCTAAGACAAG 58.378 37.037 0.00 0.00 36.98 3.16
6195 6361 8.515695 TCCGTATCTAGACAAATCTAAGACAA 57.484 34.615 0.00 0.00 36.98 3.18
6196 6362 7.228906 CCTCCGTATCTAGACAAATCTAAGACA 59.771 40.741 0.00 0.00 36.98 3.41
6197 6363 7.229106 ACCTCCGTATCTAGACAAATCTAAGAC 59.771 40.741 0.00 0.00 36.98 3.01
6198 6364 7.288560 ACCTCCGTATCTAGACAAATCTAAGA 58.711 38.462 0.00 0.00 36.98 2.10
6199 6365 7.513371 ACCTCCGTATCTAGACAAATCTAAG 57.487 40.000 0.00 0.00 36.98 2.18
6200 6366 9.228949 GATACCTCCGTATCTAGACAAATCTAA 57.771 37.037 0.00 0.00 45.11 2.10
6201 6367 8.789825 GATACCTCCGTATCTAGACAAATCTA 57.210 38.462 0.00 0.00 45.11 1.98
6202 6368 7.690952 GATACCTCCGTATCTAGACAAATCT 57.309 40.000 0.00 0.00 45.11 2.40
6214 6380 7.450634 TCATTTTAGTGCTAGATACCTCCGTAT 59.549 37.037 0.00 0.00 37.92 3.06
6215 6381 6.774170 TCATTTTAGTGCTAGATACCTCCGTA 59.226 38.462 0.00 0.00 0.00 4.02
6216 6382 5.597182 TCATTTTAGTGCTAGATACCTCCGT 59.403 40.000 0.00 0.00 0.00 4.69
6217 6383 6.085555 TCATTTTAGTGCTAGATACCTCCG 57.914 41.667 0.00 0.00 0.00 4.63
6218 6384 7.014808 AGACTCATTTTAGTGCTAGATACCTCC 59.985 40.741 0.00 0.00 0.00 4.30
6219 6385 7.947282 AGACTCATTTTAGTGCTAGATACCTC 58.053 38.462 0.00 0.00 0.00 3.85
6220 6386 7.906199 AGACTCATTTTAGTGCTAGATACCT 57.094 36.000 0.00 0.00 0.00 3.08
6221 6387 9.069082 TCTAGACTCATTTTAGTGCTAGATACC 57.931 37.037 0.00 0.00 34.69 2.73
6225 6391 9.628500 TGTATCTAGACTCATTTTAGTGCTAGA 57.372 33.333 0.00 0.00 38.76 2.43
6228 6394 9.142014 AGATGTATCTAGACTCATTTTAGTGCT 57.858 33.333 11.25 2.44 34.85 4.40
6229 6395 9.190858 CAGATGTATCTAGACTCATTTTAGTGC 57.809 37.037 11.25 0.69 34.85 4.40
6238 6404 9.713713 GTCTACATACAGATGTATCTAGACTCA 57.286 37.037 25.52 0.00 45.59 3.41
6245 6411 9.147732 TGGATTTGTCTACATACAGATGTATCT 57.852 33.333 2.47 0.00 45.42 1.98
6246 6412 9.764363 TTGGATTTGTCTACATACAGATGTATC 57.236 33.333 2.47 0.00 45.42 2.24
6247 6413 9.770097 CTTGGATTTGTCTACATACAGATGTAT 57.230 33.333 0.00 0.00 45.42 2.29
6248 6414 8.977412 TCTTGGATTTGTCTACATACAGATGTA 58.023 33.333 0.00 0.00 44.77 2.29
6250 6416 7.765819 TGTCTTGGATTTGTCTACATACAGATG 59.234 37.037 0.00 0.00 39.16 2.90
6251 6417 7.851228 TGTCTTGGATTTGTCTACATACAGAT 58.149 34.615 0.00 0.00 0.00 2.90
6252 6418 7.239763 TGTCTTGGATTTGTCTACATACAGA 57.760 36.000 0.00 0.00 0.00 3.41
6253 6419 7.604164 ACTTGTCTTGGATTTGTCTACATACAG 59.396 37.037 0.00 0.00 0.00 2.74
6254 6420 7.450074 ACTTGTCTTGGATTTGTCTACATACA 58.550 34.615 0.00 0.00 0.00 2.29
6255 6421 7.907214 ACTTGTCTTGGATTTGTCTACATAC 57.093 36.000 0.00 0.00 0.00 2.39
6257 6423 9.520515 AATTACTTGTCTTGGATTTGTCTACAT 57.479 29.630 0.00 0.00 0.00 2.29
6258 6424 8.918202 AATTACTTGTCTTGGATTTGTCTACA 57.082 30.769 0.00 0.00 0.00 2.74
6259 6425 8.169268 CGAATTACTTGTCTTGGATTTGTCTAC 58.831 37.037 0.00 0.00 0.00 2.59
6260 6426 7.333423 CCGAATTACTTGTCTTGGATTTGTCTA 59.667 37.037 0.00 0.00 0.00 2.59
6261 6427 6.149474 CCGAATTACTTGTCTTGGATTTGTCT 59.851 38.462 0.00 0.00 0.00 3.41
6262 6428 6.148811 TCCGAATTACTTGTCTTGGATTTGTC 59.851 38.462 0.00 0.00 0.00 3.18
6263 6429 6.001460 TCCGAATTACTTGTCTTGGATTTGT 58.999 36.000 0.00 0.00 0.00 2.83
6264 6430 6.494893 TCCGAATTACTTGTCTTGGATTTG 57.505 37.500 0.00 0.00 0.00 2.32
6265 6431 6.348213 CGTTCCGAATTACTTGTCTTGGATTT 60.348 38.462 0.00 0.00 0.00 2.17
6266 6432 5.121768 CGTTCCGAATTACTTGTCTTGGATT 59.878 40.000 0.00 0.00 0.00 3.01
6267 6433 4.630069 CGTTCCGAATTACTTGTCTTGGAT 59.370 41.667 0.00 0.00 0.00 3.41
6268 6434 3.991773 CGTTCCGAATTACTTGTCTTGGA 59.008 43.478 0.00 0.00 0.00 3.53
6269 6435 3.124636 CCGTTCCGAATTACTTGTCTTGG 59.875 47.826 0.00 0.00 0.00 3.61
6270 6436 3.991773 TCCGTTCCGAATTACTTGTCTTG 59.008 43.478 0.00 0.00 0.00 3.02
6271 6437 4.243270 CTCCGTTCCGAATTACTTGTCTT 58.757 43.478 0.00 0.00 0.00 3.01
6272 6438 3.368116 CCTCCGTTCCGAATTACTTGTCT 60.368 47.826 0.00 0.00 0.00 3.41
6273 6439 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
6274 6440 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
6275 6441 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
6276 6442 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
6277 6443 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
6278 6444 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
6279 6445 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
6280 6446 1.856629 TACTCCCTCCGTTCCGAATT 58.143 50.000 0.00 0.00 0.00 2.17
6281 6447 1.856629 TTACTCCCTCCGTTCCGAAT 58.143 50.000 0.00 0.00 0.00 3.34
6282 6448 1.631405 TTTACTCCCTCCGTTCCGAA 58.369 50.000 0.00 0.00 0.00 4.30
6283 6449 1.547372 CTTTTACTCCCTCCGTTCCGA 59.453 52.381 0.00 0.00 0.00 4.55
6284 6450 1.547372 TCTTTTACTCCCTCCGTTCCG 59.453 52.381 0.00 0.00 0.00 4.30
6285 6451 2.830321 TCTCTTTTACTCCCTCCGTTCC 59.170 50.000 0.00 0.00 0.00 3.62
6286 6452 3.510753 ACTCTCTTTTACTCCCTCCGTTC 59.489 47.826 0.00 0.00 0.00 3.95
6287 6453 3.258622 CACTCTCTTTTACTCCCTCCGTT 59.741 47.826 0.00 0.00 0.00 4.44
6288 6454 2.826725 CACTCTCTTTTACTCCCTCCGT 59.173 50.000 0.00 0.00 0.00 4.69
6289 6455 2.826725 ACACTCTCTTTTACTCCCTCCG 59.173 50.000 0.00 0.00 0.00 4.63
6290 6456 4.090819 AGACACTCTCTTTTACTCCCTCC 58.909 47.826 0.00 0.00 0.00 4.30
6291 6457 5.244178 TCAAGACACTCTCTTTTACTCCCTC 59.756 44.000 0.00 0.00 37.08 4.30
6292 6458 5.148502 TCAAGACACTCTCTTTTACTCCCT 58.851 41.667 0.00 0.00 37.08 4.20
6293 6459 5.470047 TCAAGACACTCTCTTTTACTCCC 57.530 43.478 0.00 0.00 37.08 4.30
6294 6460 7.787725 TTTTCAAGACACTCTCTTTTACTCC 57.212 36.000 0.00 0.00 37.08 3.85
6304 6470 7.830739 AGAACACAAATTTTTCAAGACACTCT 58.169 30.769 4.40 0.00 0.00 3.24
6481 8841 4.046938 TGACTCAGATTTGCCGAGATAC 57.953 45.455 0.00 0.00 0.00 2.24
6497 8857 3.934068 TCCGTCCCAAATTAGTTGACTC 58.066 45.455 0.00 0.00 39.87 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.