Multiple sequence alignment - TraesCS5A01G068600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G068600 chr5A 100.000 3444 0 0 1 3444 76954858 76958301 0.000000e+00 6360.0
1 TraesCS5A01G068600 chr5A 92.564 390 28 1 1 389 364540299 364539910 3.000000e-155 558.0
2 TraesCS5A01G068600 chr5A 91.538 390 32 1 1 389 401246654 401246265 1.410000e-148 536.0
3 TraesCS5A01G068600 chr5D 94.807 2311 58 18 406 2692 80436203 80438475 0.000000e+00 3546.0
4 TraesCS5A01G068600 chr5D 95.745 564 8 8 2699 3254 80438512 80439067 0.000000e+00 894.0
5 TraesCS5A01G068600 chr5D 96.891 193 6 0 3252 3444 80441239 80441431 1.190000e-84 324.0
6 TraesCS5A01G068600 chr5D 97.872 47 1 0 3286 3332 554506266 554506312 7.920000e-12 82.4
7 TraesCS5A01G068600 chr5B 94.540 2326 69 21 390 2692 89304344 89306634 0.000000e+00 3539.0
8 TraesCS5A01G068600 chr5B 94.930 572 16 8 2699 3263 89306671 89307236 0.000000e+00 883.0
9 TraesCS5A01G068600 chr5B 97.059 68 2 0 3377 3444 89307344 89307411 7.810000e-22 115.0
10 TraesCS5A01G068600 chr5B 95.556 45 2 0 3292 3336 877654 877698 4.770000e-09 73.1
11 TraesCS5A01G068600 chr5B 95.652 46 1 1 3288 3333 696176964 696176920 4.770000e-09 73.1
12 TraesCS5A01G068600 chr1A 94.979 1215 43 3 1226 2427 508205178 508203969 0.000000e+00 1890.0
13 TraesCS5A01G068600 chr1A 95.552 607 27 0 1544 2150 588667246 588667852 0.000000e+00 972.0
14 TraesCS5A01G068600 chr1A 92.051 390 30 1 1 389 366985189 366984800 6.500000e-152 547.0
15 TraesCS5A01G068600 chr2A 94.335 1218 48 5 1226 2427 651807095 651805883 0.000000e+00 1847.0
16 TraesCS5A01G068600 chr6A 94.113 1223 46 5 1226 2427 558037092 558038309 0.000000e+00 1836.0
17 TraesCS5A01G068600 chr7D 91.290 597 46 4 1491 2087 599758650 599758060 0.000000e+00 809.0
18 TraesCS5A01G068600 chr4B 89.319 646 66 3 1442 2087 580890499 580889857 0.000000e+00 808.0
19 TraesCS5A01G068600 chr4B 97.674 43 1 0 3292 3334 144758329 144758287 1.330000e-09 75.0
20 TraesCS5A01G068600 chr1D 91.077 594 46 5 1491 2084 479641819 479642405 0.000000e+00 797.0
21 TraesCS5A01G068600 chr1D 92.526 388 28 1 3 389 344600413 344600800 3.880000e-154 555.0
22 TraesCS5A01G068600 chr1D 97.727 44 1 0 3292 3335 202564384 202564341 3.690000e-10 76.8
23 TraesCS5A01G068600 chr2D 92.051 390 30 1 1 389 66130657 66131046 6.500000e-152 547.0
24 TraesCS5A01G068600 chr2D 91.026 390 34 1 1 389 516933557 516933168 3.040000e-145 525.0
25 TraesCS5A01G068600 chr7A 91.026 390 34 1 1 389 186588041 186588430 3.040000e-145 525.0
26 TraesCS5A01G068600 chr7A 91.026 390 34 1 1 389 204658639 204659028 3.040000e-145 525.0
27 TraesCS5A01G068600 chr4D 91.026 390 34 1 1 389 485019731 485019342 3.040000e-145 525.0
28 TraesCS5A01G068600 chr1B 100.000 44 0 0 3291 3334 338014807 338014764 7.920000e-12 82.4
29 TraesCS5A01G068600 chr7B 97.674 43 1 0 3292 3334 449502738 449502780 1.330000e-09 75.0
30 TraesCS5A01G068600 chr2B 93.617 47 3 0 3286 3332 458853940 458853986 1.710000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G068600 chr5A 76954858 76958301 3443 False 6360.000000 6360 100.000000 1 3444 1 chr5A.!!$F1 3443
1 TraesCS5A01G068600 chr5D 80436203 80441431 5228 False 1588.000000 3546 95.814333 406 3444 3 chr5D.!!$F2 3038
2 TraesCS5A01G068600 chr5B 89304344 89307411 3067 False 1512.333333 3539 95.509667 390 3444 3 chr5B.!!$F2 3054
3 TraesCS5A01G068600 chr1A 508203969 508205178 1209 True 1890.000000 1890 94.979000 1226 2427 1 chr1A.!!$R2 1201
4 TraesCS5A01G068600 chr1A 588667246 588667852 606 False 972.000000 972 95.552000 1544 2150 1 chr1A.!!$F1 606
5 TraesCS5A01G068600 chr2A 651805883 651807095 1212 True 1847.000000 1847 94.335000 1226 2427 1 chr2A.!!$R1 1201
6 TraesCS5A01G068600 chr6A 558037092 558038309 1217 False 1836.000000 1836 94.113000 1226 2427 1 chr6A.!!$F1 1201
7 TraesCS5A01G068600 chr7D 599758060 599758650 590 True 809.000000 809 91.290000 1491 2087 1 chr7D.!!$R1 596
8 TraesCS5A01G068600 chr4B 580889857 580890499 642 True 808.000000 808 89.319000 1442 2087 1 chr4B.!!$R2 645
9 TraesCS5A01G068600 chr1D 479641819 479642405 586 False 797.000000 797 91.077000 1491 2084 1 chr1D.!!$F2 593

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
49 50 0.032952 CTTGGTCCTTCGGTCGACAA 59.967 55.0 18.91 2.78 0.0 3.18 F
198 199 0.179176 GCATATTTGTGCGCACCGAA 60.179 50.0 35.72 28.70 35.1 4.30 F
750 755 0.235926 GGCACGTGAAAAGAGCAGTC 59.764 55.0 22.23 0.00 33.1 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1331 1340 0.169009 GATGCTCGCACCAAGAAACC 59.831 55.0 0.0 0.0 0.0 3.27 R
1544 1553 0.833287 CCACATCATCCTCCCGTTCT 59.167 55.0 0.0 0.0 0.0 3.01 R
2696 2748 0.395586 AACAGTGCAGAGTTTGGGCA 60.396 50.0 0.0 0.0 34.7 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.747155 TCACCTCTAGATTTTCGATACCTAG 57.253 40.000 0.00 0.00 0.00 3.02
25 26 6.207025 TCACCTCTAGATTTTCGATACCTAGC 59.793 42.308 0.00 0.00 0.00 3.42
26 27 5.477637 ACCTCTAGATTTTCGATACCTAGCC 59.522 44.000 0.00 0.00 0.00 3.93
27 28 5.105675 CCTCTAGATTTTCGATACCTAGCCC 60.106 48.000 0.00 0.00 0.00 5.19
28 29 4.771054 TCTAGATTTTCGATACCTAGCCCC 59.229 45.833 0.00 0.00 0.00 5.80
29 30 2.638363 AGATTTTCGATACCTAGCCCCC 59.362 50.000 0.00 0.00 0.00 5.40
43 44 2.933834 CCCCCTTGGTCCTTCGGT 60.934 66.667 0.00 0.00 0.00 4.69
44 45 2.669240 CCCCTTGGTCCTTCGGTC 59.331 66.667 0.00 0.00 0.00 4.79
45 46 2.264794 CCCTTGGTCCTTCGGTCG 59.735 66.667 0.00 0.00 0.00 4.79
46 47 2.280552 CCCTTGGTCCTTCGGTCGA 61.281 63.158 0.00 0.00 0.00 4.20
47 48 1.080025 CCTTGGTCCTTCGGTCGAC 60.080 63.158 7.13 7.13 0.00 4.20
48 49 1.663739 CTTGGTCCTTCGGTCGACA 59.336 57.895 18.91 0.00 0.00 4.35
49 50 0.032952 CTTGGTCCTTCGGTCGACAA 59.967 55.000 18.91 2.78 0.00 3.18
50 51 0.464870 TTGGTCCTTCGGTCGACAAA 59.535 50.000 18.91 10.02 0.00 2.83
51 52 0.682852 TGGTCCTTCGGTCGACAAAT 59.317 50.000 18.91 0.00 0.00 2.32
52 53 1.894466 TGGTCCTTCGGTCGACAAATA 59.106 47.619 18.91 0.00 0.00 1.40
53 54 2.299582 TGGTCCTTCGGTCGACAAATAA 59.700 45.455 18.91 4.54 0.00 1.40
54 55 3.055675 TGGTCCTTCGGTCGACAAATAAT 60.056 43.478 18.91 0.00 0.00 1.28
55 56 3.308866 GGTCCTTCGGTCGACAAATAATG 59.691 47.826 18.91 3.08 0.00 1.90
71 72 8.934507 ACAAATAATGTCTCACTTAGCTAGTC 57.065 34.615 0.00 0.00 37.96 2.59
72 73 8.754080 ACAAATAATGTCTCACTTAGCTAGTCT 58.246 33.333 0.00 0.00 37.96 3.24
78 79 9.635404 AATGTCTCACTTAGCTAGTCTATACTT 57.365 33.333 0.00 0.00 37.15 2.24
79 80 8.665643 TGTCTCACTTAGCTAGTCTATACTTC 57.334 38.462 0.00 0.00 37.15 3.01
80 81 8.487848 TGTCTCACTTAGCTAGTCTATACTTCT 58.512 37.037 0.00 0.00 37.15 2.85
81 82 9.333724 GTCTCACTTAGCTAGTCTATACTTCTT 57.666 37.037 0.00 0.00 37.15 2.52
82 83 9.550406 TCTCACTTAGCTAGTCTATACTTCTTC 57.450 37.037 0.00 0.00 37.15 2.87
83 84 9.555727 CTCACTTAGCTAGTCTATACTTCTTCT 57.444 37.037 0.00 0.00 37.15 2.85
84 85 9.908747 TCACTTAGCTAGTCTATACTTCTTCTT 57.091 33.333 0.00 0.00 37.15 2.52
86 87 9.908747 ACTTAGCTAGTCTATACTTCTTCTTCA 57.091 33.333 0.00 0.00 37.15 3.02
89 90 8.817092 AGCTAGTCTATACTTCTTCTTCAAGT 57.183 34.615 0.00 0.00 37.15 3.16
90 91 8.899771 AGCTAGTCTATACTTCTTCTTCAAGTC 58.100 37.037 0.00 0.00 37.15 3.01
91 92 8.679100 GCTAGTCTATACTTCTTCTTCAAGTCA 58.321 37.037 0.00 0.00 37.15 3.41
94 95 9.249053 AGTCTATACTTCTTCTTCAAGTCATCA 57.751 33.333 0.00 0.00 35.63 3.07
95 96 9.296400 GTCTATACTTCTTCTTCAAGTCATCAC 57.704 37.037 0.00 0.00 35.63 3.06
96 97 9.249053 TCTATACTTCTTCTTCAAGTCATCACT 57.751 33.333 0.00 0.00 35.63 3.41
97 98 9.868277 CTATACTTCTTCTTCAAGTCATCACTT 57.132 33.333 0.00 0.00 44.26 3.16
99 100 7.256756 ACTTCTTCTTCAAGTCATCACTTTG 57.743 36.000 0.00 0.00 41.24 2.77
100 101 5.679734 TCTTCTTCAAGTCATCACTTTGC 57.320 39.130 0.00 0.00 41.24 3.68
101 102 4.516698 TCTTCTTCAAGTCATCACTTTGCC 59.483 41.667 0.00 0.00 41.24 4.52
102 103 2.807967 TCTTCAAGTCATCACTTTGCCG 59.192 45.455 0.00 0.00 41.24 5.69
103 104 2.542020 TCAAGTCATCACTTTGCCGA 57.458 45.000 0.00 0.00 41.24 5.54
104 105 2.844946 TCAAGTCATCACTTTGCCGAA 58.155 42.857 0.00 0.00 41.24 4.30
105 106 3.210227 TCAAGTCATCACTTTGCCGAAA 58.790 40.909 0.00 0.00 41.24 3.46
106 107 3.629855 TCAAGTCATCACTTTGCCGAAAA 59.370 39.130 0.00 0.00 41.24 2.29
107 108 4.097135 TCAAGTCATCACTTTGCCGAAAAA 59.903 37.500 0.00 0.00 41.24 1.94
129 130 6.753107 AAACGGGATCGATAAAAATCAAGT 57.247 33.333 0.00 0.00 40.11 3.16
130 131 5.986004 ACGGGATCGATAAAAATCAAGTC 57.014 39.130 0.00 0.00 40.11 3.01
131 132 5.671493 ACGGGATCGATAAAAATCAAGTCT 58.329 37.500 0.00 0.00 40.11 3.24
132 133 6.113411 ACGGGATCGATAAAAATCAAGTCTT 58.887 36.000 0.00 0.00 40.11 3.01
133 134 6.598064 ACGGGATCGATAAAAATCAAGTCTTT 59.402 34.615 0.00 0.00 40.11 2.52
134 135 7.120726 ACGGGATCGATAAAAATCAAGTCTTTT 59.879 33.333 0.00 0.00 40.11 2.27
135 136 7.640240 CGGGATCGATAAAAATCAAGTCTTTTC 59.360 37.037 0.00 0.00 39.00 2.29
136 137 7.915923 GGGATCGATAAAAATCAAGTCTTTTCC 59.084 37.037 0.00 0.00 0.00 3.13
137 138 7.640240 GGATCGATAAAAATCAAGTCTTTTCCG 59.360 37.037 0.00 0.00 0.00 4.30
138 139 7.661127 TCGATAAAAATCAAGTCTTTTCCGA 57.339 32.000 0.00 0.00 32.42 4.55
139 140 8.090250 TCGATAAAAATCAAGTCTTTTCCGAA 57.910 30.769 0.00 0.00 32.18 4.30
140 141 8.013378 TCGATAAAAATCAAGTCTTTTCCGAAC 58.987 33.333 0.00 0.00 32.18 3.95
141 142 8.015658 CGATAAAAATCAAGTCTTTTCCGAACT 58.984 33.333 0.00 0.00 0.00 3.01
142 143 9.331106 GATAAAAATCAAGTCTTTTCCGAACTC 57.669 33.333 0.00 0.00 0.00 3.01
143 144 5.690997 AAATCAAGTCTTTTCCGAACTCC 57.309 39.130 0.00 0.00 0.00 3.85
144 145 2.750948 TCAAGTCTTTTCCGAACTCCG 58.249 47.619 0.00 0.00 38.18 4.63
145 146 2.363038 TCAAGTCTTTTCCGAACTCCGA 59.637 45.455 0.00 0.00 41.76 4.55
146 147 2.435533 AGTCTTTTCCGAACTCCGAC 57.564 50.000 0.00 0.00 41.76 4.79
147 148 1.962100 AGTCTTTTCCGAACTCCGACT 59.038 47.619 0.00 0.00 41.76 4.18
148 149 2.059541 GTCTTTTCCGAACTCCGACTG 58.940 52.381 0.00 0.00 41.76 3.51
149 150 1.000506 TCTTTTCCGAACTCCGACTGG 59.999 52.381 0.00 0.00 41.76 4.00
150 151 0.754472 TTTTCCGAACTCCGACTGGT 59.246 50.000 0.00 0.00 41.76 4.00
151 152 1.619654 TTTCCGAACTCCGACTGGTA 58.380 50.000 0.00 0.00 41.76 3.25
152 153 0.883833 TTCCGAACTCCGACTGGTAC 59.116 55.000 0.00 0.00 41.76 3.34
153 154 0.962356 TCCGAACTCCGACTGGTACC 60.962 60.000 4.43 4.43 41.76 3.34
154 155 0.964358 CCGAACTCCGACTGGTACCT 60.964 60.000 14.36 0.00 41.76 3.08
155 156 0.450983 CGAACTCCGACTGGTACCTC 59.549 60.000 14.36 1.91 41.76 3.85
156 157 0.450983 GAACTCCGACTGGTACCTCG 59.549 60.000 14.36 14.67 36.30 4.63
157 158 0.964358 AACTCCGACTGGTACCTCGG 60.964 60.000 28.36 28.36 45.60 4.63
159 160 4.007457 CCGACTGGTACCTCGGAA 57.993 61.111 29.73 2.79 46.72 4.30
160 161 2.269978 CCGACTGGTACCTCGGAAA 58.730 57.895 29.73 2.05 46.72 3.13
161 162 0.604578 CCGACTGGTACCTCGGAAAA 59.395 55.000 29.73 1.32 46.72 2.29
162 163 1.001181 CCGACTGGTACCTCGGAAAAA 59.999 52.381 29.73 0.59 46.72 1.94
163 164 2.334838 CGACTGGTACCTCGGAAAAAG 58.665 52.381 14.36 1.53 0.00 2.27
164 165 2.029649 CGACTGGTACCTCGGAAAAAGA 60.030 50.000 14.36 0.00 0.00 2.52
165 166 3.324117 GACTGGTACCTCGGAAAAAGAC 58.676 50.000 14.36 0.00 0.00 3.01
166 167 2.701951 ACTGGTACCTCGGAAAAAGACA 59.298 45.455 14.36 0.00 0.00 3.41
167 168 3.135167 ACTGGTACCTCGGAAAAAGACAA 59.865 43.478 14.36 0.00 0.00 3.18
168 169 4.202430 ACTGGTACCTCGGAAAAAGACAAT 60.202 41.667 14.36 0.00 0.00 2.71
169 170 5.012354 ACTGGTACCTCGGAAAAAGACAATA 59.988 40.000 14.36 0.00 0.00 1.90
170 171 5.484715 TGGTACCTCGGAAAAAGACAATAG 58.515 41.667 14.36 0.00 0.00 1.73
171 172 4.874396 GGTACCTCGGAAAAAGACAATAGG 59.126 45.833 4.06 0.00 0.00 2.57
172 173 4.903045 ACCTCGGAAAAAGACAATAGGA 57.097 40.909 0.00 0.00 0.00 2.94
173 174 5.237236 ACCTCGGAAAAAGACAATAGGAA 57.763 39.130 0.00 0.00 0.00 3.36
174 175 5.001874 ACCTCGGAAAAAGACAATAGGAAC 58.998 41.667 0.00 0.00 0.00 3.62
175 176 5.001232 CCTCGGAAAAAGACAATAGGAACA 58.999 41.667 0.00 0.00 0.00 3.18
176 177 5.648092 CCTCGGAAAAAGACAATAGGAACAT 59.352 40.000 0.00 0.00 0.00 2.71
177 178 6.403636 CCTCGGAAAAAGACAATAGGAACATG 60.404 42.308 0.00 0.00 0.00 3.21
178 179 5.414454 TCGGAAAAAGACAATAGGAACATGG 59.586 40.000 0.00 0.00 0.00 3.66
179 180 5.393027 CGGAAAAAGACAATAGGAACATGGG 60.393 44.000 0.00 0.00 0.00 4.00
180 181 5.405935 AAAAAGACAATAGGAACATGGGC 57.594 39.130 0.00 0.00 0.00 5.36
181 182 3.737559 AAGACAATAGGAACATGGGCA 57.262 42.857 0.00 0.00 0.00 5.36
182 183 3.959495 AGACAATAGGAACATGGGCAT 57.041 42.857 0.00 0.00 0.00 4.40
183 184 5.387113 AAGACAATAGGAACATGGGCATA 57.613 39.130 0.00 0.00 0.00 3.14
184 185 5.589367 AGACAATAGGAACATGGGCATAT 57.411 39.130 0.00 0.00 0.00 1.78
185 186 5.957132 AGACAATAGGAACATGGGCATATT 58.043 37.500 0.00 0.00 0.00 1.28
186 187 6.376248 AGACAATAGGAACATGGGCATATTT 58.624 36.000 0.00 0.00 0.00 1.40
187 188 6.266103 AGACAATAGGAACATGGGCATATTTG 59.734 38.462 0.00 0.00 0.00 2.32
188 189 5.898972 ACAATAGGAACATGGGCATATTTGT 59.101 36.000 0.00 0.00 0.00 2.83
189 190 6.183360 ACAATAGGAACATGGGCATATTTGTG 60.183 38.462 0.00 0.00 0.00 3.33
190 191 2.431782 AGGAACATGGGCATATTTGTGC 59.568 45.455 0.00 0.00 44.31 4.57
191 192 2.462889 GAACATGGGCATATTTGTGCG 58.537 47.619 0.00 0.00 45.97 5.34
195 196 4.400410 GGCATATTTGTGCGCACC 57.600 55.556 35.72 18.99 45.97 5.01
196 197 1.586042 GGCATATTTGTGCGCACCG 60.586 57.895 35.72 18.18 45.97 4.94
197 198 1.427419 GCATATTTGTGCGCACCGA 59.573 52.632 35.72 24.56 35.10 4.69
198 199 0.179176 GCATATTTGTGCGCACCGAA 60.179 50.000 35.72 28.70 35.10 4.30
199 200 1.533756 GCATATTTGTGCGCACCGAAT 60.534 47.619 35.72 32.12 35.10 3.34
200 201 2.796304 CATATTTGTGCGCACCGAATT 58.204 42.857 35.72 21.84 0.00 2.17
201 202 3.790456 GCATATTTGTGCGCACCGAATTA 60.790 43.478 35.72 23.08 35.10 1.40
202 203 2.999507 ATTTGTGCGCACCGAATTAA 57.000 40.000 35.72 20.26 0.00 1.40
203 204 2.999507 TTTGTGCGCACCGAATTAAT 57.000 40.000 35.72 0.00 0.00 1.40
204 205 4.624336 ATTTGTGCGCACCGAATTAATA 57.376 36.364 35.72 12.75 0.00 0.98
205 206 4.421033 TTTGTGCGCACCGAATTAATAA 57.579 36.364 35.72 18.06 0.00 1.40
206 207 3.666883 TGTGCGCACCGAATTAATAAG 57.333 42.857 35.72 0.00 0.00 1.73
207 208 3.263261 TGTGCGCACCGAATTAATAAGA 58.737 40.909 35.72 11.18 0.00 2.10
208 209 3.685272 TGTGCGCACCGAATTAATAAGAA 59.315 39.130 35.72 10.71 0.00 2.52
209 210 4.334203 TGTGCGCACCGAATTAATAAGAAT 59.666 37.500 35.72 0.00 0.00 2.40
210 211 5.163703 TGTGCGCACCGAATTAATAAGAATT 60.164 36.000 35.72 0.00 0.00 2.17
211 212 6.037281 TGTGCGCACCGAATTAATAAGAATTA 59.963 34.615 35.72 9.24 33.48 1.40
212 213 6.908284 GTGCGCACCGAATTAATAAGAATTAA 59.092 34.615 30.12 0.00 40.83 1.40
213 214 7.429920 GTGCGCACCGAATTAATAAGAATTAAA 59.570 33.333 30.12 0.00 40.16 1.52
214 215 8.132362 TGCGCACCGAATTAATAAGAATTAAAT 58.868 29.630 5.66 0.00 40.16 1.40
215 216 8.417176 GCGCACCGAATTAATAAGAATTAAATG 58.583 33.333 0.30 0.00 40.16 2.32
216 217 8.901748 CGCACCGAATTAATAAGAATTAAATGG 58.098 33.333 0.00 0.00 40.16 3.16
217 218 8.699749 GCACCGAATTAATAAGAATTAAATGGC 58.300 33.333 0.00 0.00 40.16 4.40
218 219 9.191995 CACCGAATTAATAAGAATTAAATGGCC 57.808 33.333 0.00 0.00 40.16 5.36
219 220 9.143155 ACCGAATTAATAAGAATTAAATGGCCT 57.857 29.630 3.32 0.00 40.16 5.19
220 221 9.626045 CCGAATTAATAAGAATTAAATGGCCTC 57.374 33.333 3.32 0.00 40.16 4.70
221 222 9.626045 CGAATTAATAAGAATTAAATGGCCTCC 57.374 33.333 3.32 0.00 40.16 4.30
226 227 7.687941 ATAAGAATTAAATGGCCTCCATACG 57.312 36.000 3.32 0.00 36.89 3.06
227 228 5.304686 AGAATTAAATGGCCTCCATACGA 57.695 39.130 3.32 0.00 44.40 3.43
228 229 5.063880 AGAATTAAATGGCCTCCATACGAC 58.936 41.667 3.32 0.00 44.40 4.34
229 230 3.916359 TTAAATGGCCTCCATACGACA 57.084 42.857 3.32 0.00 44.40 4.35
230 231 4.431416 TTAAATGGCCTCCATACGACAT 57.569 40.909 3.32 0.00 44.40 3.06
231 232 2.550830 AATGGCCTCCATACGACATC 57.449 50.000 3.32 0.00 44.40 3.06
232 233 1.423584 ATGGCCTCCATACGACATCA 58.576 50.000 3.32 0.00 43.19 3.07
233 234 0.752658 TGGCCTCCATACGACATCAG 59.247 55.000 3.32 0.00 0.00 2.90
234 235 0.753262 GGCCTCCATACGACATCAGT 59.247 55.000 0.00 0.00 0.00 3.41
235 236 1.139058 GGCCTCCATACGACATCAGTT 59.861 52.381 0.00 0.00 0.00 3.16
236 237 2.420129 GGCCTCCATACGACATCAGTTT 60.420 50.000 0.00 0.00 0.00 2.66
237 238 2.609459 GCCTCCATACGACATCAGTTTG 59.391 50.000 0.00 0.00 0.00 2.93
238 239 3.861840 CCTCCATACGACATCAGTTTGT 58.138 45.455 0.00 0.00 0.00 2.83
239 240 3.865745 CCTCCATACGACATCAGTTTGTC 59.134 47.826 0.00 0.00 42.10 3.18
240 241 3.857052 TCCATACGACATCAGTTTGTCC 58.143 45.455 0.00 0.00 42.46 4.02
241 242 3.513912 TCCATACGACATCAGTTTGTCCT 59.486 43.478 0.00 0.00 42.46 3.85
242 243 4.020573 TCCATACGACATCAGTTTGTCCTT 60.021 41.667 0.00 0.00 42.46 3.36
243 244 4.330074 CCATACGACATCAGTTTGTCCTTC 59.670 45.833 0.00 0.00 42.46 3.46
244 245 2.767505 ACGACATCAGTTTGTCCTTCC 58.232 47.619 0.00 0.00 42.46 3.46
245 246 2.104111 ACGACATCAGTTTGTCCTTCCA 59.896 45.455 0.00 0.00 42.46 3.53
246 247 2.738846 CGACATCAGTTTGTCCTTCCAG 59.261 50.000 0.00 0.00 42.46 3.86
247 248 2.485814 GACATCAGTTTGTCCTTCCAGC 59.514 50.000 0.00 0.00 40.11 4.85
248 249 2.158623 ACATCAGTTTGTCCTTCCAGCA 60.159 45.455 0.00 0.00 0.00 4.41
249 250 2.957402 TCAGTTTGTCCTTCCAGCAT 57.043 45.000 0.00 0.00 0.00 3.79
250 251 2.783135 TCAGTTTGTCCTTCCAGCATC 58.217 47.619 0.00 0.00 0.00 3.91
251 252 1.815003 CAGTTTGTCCTTCCAGCATCC 59.185 52.381 0.00 0.00 0.00 3.51
252 253 1.177401 GTTTGTCCTTCCAGCATCCC 58.823 55.000 0.00 0.00 0.00 3.85
253 254 0.776810 TTTGTCCTTCCAGCATCCCA 59.223 50.000 0.00 0.00 0.00 4.37
254 255 0.776810 TTGTCCTTCCAGCATCCCAA 59.223 50.000 0.00 0.00 0.00 4.12
255 256 1.002069 TGTCCTTCCAGCATCCCAAT 58.998 50.000 0.00 0.00 0.00 3.16
256 257 1.358787 TGTCCTTCCAGCATCCCAATT 59.641 47.619 0.00 0.00 0.00 2.32
257 258 2.225343 TGTCCTTCCAGCATCCCAATTT 60.225 45.455 0.00 0.00 0.00 1.82
258 259 2.428530 GTCCTTCCAGCATCCCAATTTC 59.571 50.000 0.00 0.00 0.00 2.17
259 260 2.312741 TCCTTCCAGCATCCCAATTTCT 59.687 45.455 0.00 0.00 0.00 2.52
260 261 3.102204 CCTTCCAGCATCCCAATTTCTT 58.898 45.455 0.00 0.00 0.00 2.52
261 262 4.017591 TCCTTCCAGCATCCCAATTTCTTA 60.018 41.667 0.00 0.00 0.00 2.10
262 263 4.897670 CCTTCCAGCATCCCAATTTCTTAT 59.102 41.667 0.00 0.00 0.00 1.73
263 264 5.010415 CCTTCCAGCATCCCAATTTCTTATC 59.990 44.000 0.00 0.00 0.00 1.75
264 265 5.128033 TCCAGCATCCCAATTTCTTATCA 57.872 39.130 0.00 0.00 0.00 2.15
265 266 5.517924 TCCAGCATCCCAATTTCTTATCAA 58.482 37.500 0.00 0.00 0.00 2.57
266 267 5.957168 TCCAGCATCCCAATTTCTTATCAAA 59.043 36.000 0.00 0.00 0.00 2.69
267 268 6.612456 TCCAGCATCCCAATTTCTTATCAAAT 59.388 34.615 0.00 0.00 0.00 2.32
268 269 6.927381 CCAGCATCCCAATTTCTTATCAAATC 59.073 38.462 0.00 0.00 0.00 2.17
269 270 7.418139 CCAGCATCCCAATTTCTTATCAAATCA 60.418 37.037 0.00 0.00 0.00 2.57
270 271 7.982919 CAGCATCCCAATTTCTTATCAAATCAA 59.017 33.333 0.00 0.00 0.00 2.57
271 272 8.711170 AGCATCCCAATTTCTTATCAAATCAAT 58.289 29.630 0.00 0.00 0.00 2.57
272 273 8.985805 GCATCCCAATTTCTTATCAAATCAATC 58.014 33.333 0.00 0.00 0.00 2.67
273 274 9.485206 CATCCCAATTTCTTATCAAATCAATCC 57.515 33.333 0.00 0.00 0.00 3.01
274 275 8.021898 TCCCAATTTCTTATCAAATCAATCCC 57.978 34.615 0.00 0.00 0.00 3.85
275 276 7.071071 TCCCAATTTCTTATCAAATCAATCCCC 59.929 37.037 0.00 0.00 0.00 4.81
276 277 7.147514 CCCAATTTCTTATCAAATCAATCCCCA 60.148 37.037 0.00 0.00 0.00 4.96
277 278 8.266473 CCAATTTCTTATCAAATCAATCCCCAA 58.734 33.333 0.00 0.00 0.00 4.12
278 279 9.841295 CAATTTCTTATCAAATCAATCCCCAAT 57.159 29.630 0.00 0.00 0.00 3.16
279 280 9.841295 AATTTCTTATCAAATCAATCCCCAATG 57.159 29.630 0.00 0.00 0.00 2.82
280 281 6.409524 TCTTATCAAATCAATCCCCAATGC 57.590 37.500 0.00 0.00 0.00 3.56
281 282 5.898397 TCTTATCAAATCAATCCCCAATGCA 59.102 36.000 0.00 0.00 0.00 3.96
282 283 3.891422 TCAAATCAATCCCCAATGCAC 57.109 42.857 0.00 0.00 0.00 4.57
283 284 3.443052 TCAAATCAATCCCCAATGCACT 58.557 40.909 0.00 0.00 0.00 4.40
284 285 3.839490 TCAAATCAATCCCCAATGCACTT 59.161 39.130 0.00 0.00 0.00 3.16
285 286 4.081531 TCAAATCAATCCCCAATGCACTTC 60.082 41.667 0.00 0.00 0.00 3.01
286 287 1.851304 TCAATCCCCAATGCACTTCC 58.149 50.000 0.00 0.00 0.00 3.46
287 288 1.076841 TCAATCCCCAATGCACTTCCA 59.923 47.619 0.00 0.00 0.00 3.53
288 289 2.112998 CAATCCCCAATGCACTTCCAT 58.887 47.619 0.00 0.00 0.00 3.41
289 290 2.502538 CAATCCCCAATGCACTTCCATT 59.497 45.455 0.00 0.00 35.90 3.16
290 291 1.851304 TCCCCAATGCACTTCCATTC 58.149 50.000 0.00 0.00 33.35 2.67
291 292 1.358787 TCCCCAATGCACTTCCATTCT 59.641 47.619 0.00 0.00 33.35 2.40
292 293 1.753073 CCCCAATGCACTTCCATTCTC 59.247 52.381 0.00 0.00 33.35 2.87
293 294 2.622452 CCCCAATGCACTTCCATTCTCT 60.622 50.000 0.00 0.00 33.35 3.10
294 295 3.371917 CCCCAATGCACTTCCATTCTCTA 60.372 47.826 0.00 0.00 33.35 2.43
295 296 4.467769 CCCAATGCACTTCCATTCTCTAT 58.532 43.478 0.00 0.00 33.35 1.98
296 297 4.891756 CCCAATGCACTTCCATTCTCTATT 59.108 41.667 0.00 0.00 33.35 1.73
297 298 5.361857 CCCAATGCACTTCCATTCTCTATTT 59.638 40.000 0.00 0.00 33.35 1.40
298 299 6.270815 CCAATGCACTTCCATTCTCTATTTG 58.729 40.000 0.00 0.00 33.35 2.32
299 300 6.127535 CCAATGCACTTCCATTCTCTATTTGT 60.128 38.462 0.00 0.00 33.35 2.83
300 301 7.318141 CAATGCACTTCCATTCTCTATTTGTT 58.682 34.615 0.00 0.00 33.35 2.83
301 302 8.461222 CAATGCACTTCCATTCTCTATTTGTTA 58.539 33.333 0.00 0.00 33.35 2.41
302 303 7.615582 TGCACTTCCATTCTCTATTTGTTAG 57.384 36.000 0.00 0.00 0.00 2.34
303 304 6.094048 TGCACTTCCATTCTCTATTTGTTAGC 59.906 38.462 0.00 0.00 0.00 3.09
304 305 6.317391 GCACTTCCATTCTCTATTTGTTAGCT 59.683 38.462 0.00 0.00 0.00 3.32
305 306 7.148171 GCACTTCCATTCTCTATTTGTTAGCTT 60.148 37.037 0.00 0.00 0.00 3.74
306 307 9.383519 CACTTCCATTCTCTATTTGTTAGCTTA 57.616 33.333 0.00 0.00 0.00 3.09
307 308 9.384764 ACTTCCATTCTCTATTTGTTAGCTTAC 57.615 33.333 0.00 0.00 0.00 2.34
308 309 8.420374 TTCCATTCTCTATTTGTTAGCTTACG 57.580 34.615 0.00 0.00 0.00 3.18
309 310 7.778083 TCCATTCTCTATTTGTTAGCTTACGA 58.222 34.615 0.00 0.00 0.00 3.43
310 311 8.421784 TCCATTCTCTATTTGTTAGCTTACGAT 58.578 33.333 0.00 0.00 0.00 3.73
311 312 8.491152 CCATTCTCTATTTGTTAGCTTACGATG 58.509 37.037 0.00 0.00 0.00 3.84
312 313 9.249457 CATTCTCTATTTGTTAGCTTACGATGA 57.751 33.333 0.00 0.00 0.00 2.92
313 314 9.988815 ATTCTCTATTTGTTAGCTTACGATGAT 57.011 29.630 0.00 0.00 0.00 2.45
314 315 8.803201 TCTCTATTTGTTAGCTTACGATGATG 57.197 34.615 0.00 0.00 0.00 3.07
315 316 8.630037 TCTCTATTTGTTAGCTTACGATGATGA 58.370 33.333 0.00 0.00 0.00 2.92
316 317 9.249457 CTCTATTTGTTAGCTTACGATGATGAA 57.751 33.333 0.00 0.00 0.00 2.57
317 318 9.764363 TCTATTTGTTAGCTTACGATGATGAAT 57.236 29.630 0.00 0.00 0.00 2.57
318 319 9.803130 CTATTTGTTAGCTTACGATGATGAATG 57.197 33.333 0.00 0.00 0.00 2.67
319 320 6.603237 TTGTTAGCTTACGATGATGAATGG 57.397 37.500 0.00 0.00 0.00 3.16
320 321 5.056480 TGTTAGCTTACGATGATGAATGGG 58.944 41.667 0.00 0.00 0.00 4.00
321 322 3.845781 AGCTTACGATGATGAATGGGT 57.154 42.857 0.00 0.00 0.00 4.51
322 323 4.955811 AGCTTACGATGATGAATGGGTA 57.044 40.909 0.00 0.00 0.00 3.69
323 324 5.489792 AGCTTACGATGATGAATGGGTAT 57.510 39.130 0.00 0.00 0.00 2.73
324 325 6.605471 AGCTTACGATGATGAATGGGTATA 57.395 37.500 0.00 0.00 0.00 1.47
325 326 6.398918 AGCTTACGATGATGAATGGGTATAC 58.601 40.000 0.00 0.00 0.00 1.47
326 327 5.581085 GCTTACGATGATGAATGGGTATACC 59.419 44.000 13.99 13.99 40.81 2.73
327 328 6.574465 GCTTACGATGATGAATGGGTATACCT 60.574 42.308 21.25 1.48 41.11 3.08
328 329 7.363530 GCTTACGATGATGAATGGGTATACCTA 60.364 40.741 21.25 16.35 41.11 3.08
329 330 6.928348 ACGATGATGAATGGGTATACCTAA 57.072 37.500 21.25 10.71 41.11 2.69
330 331 7.311092 ACGATGATGAATGGGTATACCTAAA 57.689 36.000 21.25 8.24 41.11 1.85
331 332 7.918076 ACGATGATGAATGGGTATACCTAAAT 58.082 34.615 21.25 10.84 41.11 1.40
332 333 9.042450 ACGATGATGAATGGGTATACCTAAATA 57.958 33.333 21.25 6.53 41.11 1.40
333 334 9.314321 CGATGATGAATGGGTATACCTAAATAC 57.686 37.037 21.25 9.06 41.11 1.89
336 337 9.958180 TGATGAATGGGTATACCTAAATACATG 57.042 33.333 21.25 0.00 41.11 3.21
341 342 9.807921 AATGGGTATACCTAAATACATGAAAGG 57.192 33.333 21.25 0.89 41.11 3.11
342 343 8.339720 TGGGTATACCTAAATACATGAAAGGT 57.660 34.615 21.25 7.04 43.00 3.50
343 344 9.449896 TGGGTATACCTAAATACATGAAAGGTA 57.550 33.333 21.25 9.00 44.61 3.08
359 360 2.785540 GGTAAATACCCCGGTTCACA 57.214 50.000 0.00 0.00 40.53 3.58
360 361 3.070476 GGTAAATACCCCGGTTCACAA 57.930 47.619 0.00 0.00 40.53 3.33
361 362 2.749076 GGTAAATACCCCGGTTCACAAC 59.251 50.000 0.00 0.00 40.53 3.32
362 363 4.428974 GGTAAATACCCCGGTTCACAACC 61.429 52.174 0.00 0.00 43.15 3.77
373 374 4.434713 GGTTCACAACCGAATAATTGCT 57.565 40.909 0.00 0.00 42.62 3.91
374 375 4.805219 GGTTCACAACCGAATAATTGCTT 58.195 39.130 0.00 0.00 42.62 3.91
375 376 5.945155 GGTTCACAACCGAATAATTGCTTA 58.055 37.500 0.00 0.00 42.62 3.09
376 377 6.560711 GGTTCACAACCGAATAATTGCTTAT 58.439 36.000 0.00 0.00 42.62 1.73
377 378 7.699566 GGTTCACAACCGAATAATTGCTTATA 58.300 34.615 0.00 0.00 42.62 0.98
378 379 7.642586 GGTTCACAACCGAATAATTGCTTATAC 59.357 37.037 0.00 0.00 42.62 1.47
379 380 6.939627 TCACAACCGAATAATTGCTTATACG 58.060 36.000 0.00 0.00 0.00 3.06
380 381 5.619607 CACAACCGAATAATTGCTTATACGC 59.380 40.000 0.00 0.00 0.00 4.42
381 382 5.144359 CAACCGAATAATTGCTTATACGCC 58.856 41.667 0.00 0.00 0.00 5.68
382 383 4.638304 ACCGAATAATTGCTTATACGCCT 58.362 39.130 0.00 0.00 0.00 5.52
383 384 4.689345 ACCGAATAATTGCTTATACGCCTC 59.311 41.667 0.00 0.00 0.00 4.70
384 385 4.929808 CCGAATAATTGCTTATACGCCTCT 59.070 41.667 0.00 0.00 0.00 3.69
385 386 5.408604 CCGAATAATTGCTTATACGCCTCTT 59.591 40.000 0.00 0.00 0.00 2.85
386 387 6.299604 CGAATAATTGCTTATACGCCTCTTG 58.700 40.000 0.00 0.00 0.00 3.02
387 388 6.073765 CGAATAATTGCTTATACGCCTCTTGT 60.074 38.462 0.00 0.00 0.00 3.16
388 389 7.518370 CGAATAATTGCTTATACGCCTCTTGTT 60.518 37.037 0.00 0.00 0.00 2.83
403 404 5.049267 GCCTCTTGTTAAATACGAAACCACA 60.049 40.000 0.00 0.00 0.00 4.17
408 409 8.714179 TCTTGTTAAATACGAAACCACATACAG 58.286 33.333 0.00 0.00 0.00 2.74
409 410 7.966246 TGTTAAATACGAAACCACATACAGT 57.034 32.000 0.00 0.00 0.00 3.55
410 411 9.486497 TTGTTAAATACGAAACCACATACAGTA 57.514 29.630 0.00 0.00 0.00 2.74
442 443 4.271776 CGTCCTATTTTCCGTATCCAAACC 59.728 45.833 0.00 0.00 0.00 3.27
513 514 4.807834 CACAGTACTAACATGAGCATCCAG 59.192 45.833 0.00 0.00 0.00 3.86
555 556 0.316204 ATCGCCGAGTAAATACCCCG 59.684 55.000 0.00 0.00 0.00 5.73
559 560 1.944032 CCGAGTAAATACCCCGTTGG 58.056 55.000 0.00 0.00 41.37 3.77
573 574 2.806244 CCCGTTGGTAAAGTCTTGACAG 59.194 50.000 2.38 0.00 0.00 3.51
587 588 7.783090 AGTCTTGACAGATGCATAAATACAG 57.217 36.000 0.00 0.00 0.00 2.74
673 678 3.722908 TCCCGTTGGATTTAACCATCA 57.277 42.857 0.00 0.00 39.82 3.07
674 679 3.349022 TCCCGTTGGATTTAACCATCAC 58.651 45.455 0.00 0.00 39.82 3.06
675 680 3.085533 CCCGTTGGATTTAACCATCACA 58.914 45.455 0.00 0.00 39.82 3.58
676 681 3.128589 CCCGTTGGATTTAACCATCACAG 59.871 47.826 0.00 0.00 39.82 3.66
677 682 3.128589 CCGTTGGATTTAACCATCACAGG 59.871 47.826 0.00 0.00 39.82 4.00
678 683 3.427503 CGTTGGATTTAACCATCACAGGC 60.428 47.826 0.00 0.00 39.82 4.85
679 684 2.733956 TGGATTTAACCATCACAGGCC 58.266 47.619 0.00 0.00 34.77 5.19
680 685 2.042297 TGGATTTAACCATCACAGGCCA 59.958 45.455 5.01 0.00 34.77 5.36
681 686 3.299503 GGATTTAACCATCACAGGCCAT 58.700 45.455 5.01 0.00 0.00 4.40
682 687 3.068590 GGATTTAACCATCACAGGCCATG 59.931 47.826 5.01 2.37 0.00 3.66
683 688 2.142356 TTAACCATCACAGGCCATGG 57.858 50.000 16.43 16.43 44.68 3.66
684 689 3.511779 ACCATCACAGGCCATGGT 58.488 55.556 17.66 17.66 46.74 3.55
685 690 4.770540 CCATCACAGGCCATGGTT 57.229 55.556 14.67 0.00 35.67 3.67
686 691 2.980541 CCATCACAGGCCATGGTTT 58.019 52.632 14.67 0.00 35.67 3.27
687 692 1.269012 CCATCACAGGCCATGGTTTT 58.731 50.000 14.67 0.00 35.67 2.43
688 693 1.205417 CCATCACAGGCCATGGTTTTC 59.795 52.381 14.67 1.02 35.67 2.29
689 694 2.173519 CATCACAGGCCATGGTTTTCT 58.826 47.619 14.67 3.48 0.00 2.52
690 695 2.380064 TCACAGGCCATGGTTTTCTT 57.620 45.000 14.67 0.00 0.00 2.52
691 696 2.676748 TCACAGGCCATGGTTTTCTTT 58.323 42.857 14.67 0.00 0.00 2.52
692 697 3.037549 TCACAGGCCATGGTTTTCTTTT 58.962 40.909 14.67 0.00 0.00 2.27
693 698 4.219115 TCACAGGCCATGGTTTTCTTTTA 58.781 39.130 14.67 0.00 0.00 1.52
694 699 4.038642 TCACAGGCCATGGTTTTCTTTTAC 59.961 41.667 14.67 0.00 0.00 2.01
695 700 3.323691 ACAGGCCATGGTTTTCTTTTACC 59.676 43.478 14.67 1.31 34.93 2.85
697 702 3.578282 AGGCCATGGTTTTCTTTTACCAG 59.422 43.478 14.67 0.00 46.82 4.00
698 703 3.576550 GGCCATGGTTTTCTTTTACCAGA 59.423 43.478 14.67 0.00 46.82 3.86
715 720 2.224066 CCAGAGCCGTAACTATCCAAGG 60.224 54.545 0.00 0.00 0.00 3.61
750 755 0.235926 GGCACGTGAAAAGAGCAGTC 59.764 55.000 22.23 0.00 33.10 3.51
958 964 1.811266 ACATCGCTTAGCACGGCAG 60.811 57.895 4.70 0.00 0.00 4.85
991 997 0.320374 TGGTTGCAGTAACGAGAGGG 59.680 55.000 0.00 0.00 40.28 4.30
1020 1026 3.089874 CCGGGGATGGAGGAAGCA 61.090 66.667 0.00 0.00 0.00 3.91
1121 1130 2.251893 CGACCTCTTCTTGTTCTACGC 58.748 52.381 0.00 0.00 0.00 4.42
1307 1316 2.266554 GATCCTTGAAGTGAGCACTCG 58.733 52.381 3.27 0.00 41.58 4.18
1331 1340 1.361993 CTCCTCGCTCTCCCGATTG 59.638 63.158 0.00 0.00 36.54 2.67
1544 1553 6.942576 ACAAATTTAGCCTCTCTGCTTCTTAA 59.057 34.615 0.00 0.00 42.75 1.85
1927 1961 3.385433 TCGTCCTACACACCTTCTGAAAA 59.615 43.478 0.00 0.00 0.00 2.29
1939 1973 3.916776 CCTTCTGAAAAGAAATCTTGCGC 59.083 43.478 0.00 0.00 36.12 6.09
1976 2010 1.733912 TCTGATTGATTCGTGCTGTGC 59.266 47.619 0.00 0.00 0.00 4.57
2129 2163 2.899900 GCCCCATTGAGAAGGTTTCTTT 59.100 45.455 0.00 0.00 40.87 2.52
2201 2250 4.475051 TGAAATGGGCATTGGATTTGAG 57.525 40.909 0.00 0.00 0.00 3.02
2459 2511 2.202946 GAGAAGCTAGCACCGCCC 60.203 66.667 18.83 0.00 0.00 6.13
2657 2709 2.045131 GCTGGGCTGAGCTTTCCTG 61.045 63.158 3.72 2.50 35.95 3.86
2692 2744 3.645268 ACTGGAGCCCAATTCCGGC 62.645 63.158 0.00 5.10 43.59 6.13
2748 2830 4.446167 CCATAGTGGTGGATGCCATCTTAA 60.446 45.833 4.41 0.00 42.02 1.85
2785 2867 0.731417 GCTAGCTGTTGGATGCAGTG 59.269 55.000 7.70 0.00 36.42 3.66
2806 2888 1.133809 TAGCACTGAAAGGCTGGGGT 61.134 55.000 0.00 0.00 40.05 4.95
3075 3165 1.718396 TCTTGATCAGTTCTGCTGCG 58.282 50.000 0.00 0.00 44.66 5.18
3340 5640 5.888724 TGAGACAGAGGGAGTACAAGATTAG 59.111 44.000 0.00 0.00 0.00 1.73
3347 5647 5.529289 AGGGAGTACAAGATTAGGTGATCA 58.471 41.667 0.00 0.00 0.00 2.92
3437 5751 4.661125 TGTTAATGAAAGCATCGCATCAC 58.339 39.130 0.00 0.00 32.35 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.207025 GCTAGGTATCGAAAATCTAGAGGTGA 59.793 42.308 18.03 0.00 31.67 4.02
1 2 6.383415 GCTAGGTATCGAAAATCTAGAGGTG 58.617 44.000 18.03 0.00 31.67 4.00
2 3 5.477637 GGCTAGGTATCGAAAATCTAGAGGT 59.522 44.000 18.03 0.00 31.67 3.85
3 4 5.105675 GGGCTAGGTATCGAAAATCTAGAGG 60.106 48.000 18.03 0.00 31.67 3.69
4 5 5.105675 GGGGCTAGGTATCGAAAATCTAGAG 60.106 48.000 18.03 1.22 31.67 2.43
5 6 4.771054 GGGGCTAGGTATCGAAAATCTAGA 59.229 45.833 18.03 0.00 31.67 2.43
6 7 4.081586 GGGGGCTAGGTATCGAAAATCTAG 60.082 50.000 12.06 12.06 0.00 2.43
7 8 3.836562 GGGGGCTAGGTATCGAAAATCTA 59.163 47.826 0.00 0.00 0.00 1.98
8 9 2.638363 GGGGGCTAGGTATCGAAAATCT 59.362 50.000 0.00 0.00 0.00 2.40
9 10 3.055209 GGGGGCTAGGTATCGAAAATC 57.945 52.381 0.00 0.00 0.00 2.17
31 32 8.908762 ACATTATTTGTCGACCGAAGGACCAA 62.909 42.308 14.12 0.00 44.06 3.67
32 33 7.534400 ACATTATTTGTCGACCGAAGGACCA 62.534 44.000 14.12 0.00 44.06 4.02
33 34 5.154438 ACATTATTTGTCGACCGAAGGACC 61.154 45.833 14.12 0.00 44.06 4.46
34 35 3.930848 ACATTATTTGTCGACCGAAGGAC 59.069 43.478 14.12 0.00 44.06 3.85
35 36 4.196626 ACATTATTTGTCGACCGAAGGA 57.803 40.909 14.12 1.78 44.06 3.36
45 46 8.934507 ACTAGCTAAGTGAGACATTATTTGTC 57.065 34.615 0.00 0.00 45.31 3.18
46 47 8.754080 AGACTAGCTAAGTGAGACATTATTTGT 58.246 33.333 0.00 0.00 39.07 2.83
52 53 9.635404 AAGTATAGACTAGCTAAGTGAGACATT 57.365 33.333 0.00 0.00 39.07 2.71
53 54 9.280174 GAAGTATAGACTAGCTAAGTGAGACAT 57.720 37.037 0.00 0.00 39.07 3.06
54 55 8.487848 AGAAGTATAGACTAGCTAAGTGAGACA 58.512 37.037 0.00 0.00 39.07 3.41
55 56 8.897872 AGAAGTATAGACTAGCTAAGTGAGAC 57.102 38.462 0.00 0.00 39.07 3.36
56 57 9.550406 GAAGAAGTATAGACTAGCTAAGTGAGA 57.450 37.037 0.00 0.00 39.07 3.27
57 58 9.555727 AGAAGAAGTATAGACTAGCTAAGTGAG 57.444 37.037 0.00 0.00 39.07 3.51
58 59 9.908747 AAGAAGAAGTATAGACTAGCTAAGTGA 57.091 33.333 0.00 0.00 39.07 3.41
60 61 9.908747 TGAAGAAGAAGTATAGACTAGCTAAGT 57.091 33.333 0.00 0.00 42.80 2.24
63 64 9.908747 ACTTGAAGAAGAAGTATAGACTAGCTA 57.091 33.333 0.00 0.00 31.72 3.32
64 65 8.817092 ACTTGAAGAAGAAGTATAGACTAGCT 57.183 34.615 0.00 0.00 31.72 3.32
65 66 8.679100 TGACTTGAAGAAGAAGTATAGACTAGC 58.321 37.037 0.00 0.00 33.71 3.42
68 69 9.249053 TGATGACTTGAAGAAGAAGTATAGACT 57.751 33.333 0.00 0.00 33.71 3.24
69 70 9.296400 GTGATGACTTGAAGAAGAAGTATAGAC 57.704 37.037 0.00 0.00 33.71 2.59
70 71 9.249053 AGTGATGACTTGAAGAAGAAGTATAGA 57.751 33.333 0.00 0.00 33.71 1.98
71 72 9.868277 AAGTGATGACTTGAAGAAGAAGTATAG 57.132 33.333 0.00 0.00 41.12 1.31
73 74 8.997323 CAAAGTGATGACTTGAAGAAGAAGTAT 58.003 33.333 0.00 0.00 41.87 2.12
74 75 7.041780 GCAAAGTGATGACTTGAAGAAGAAGTA 60.042 37.037 0.00 0.00 41.87 2.24
75 76 6.238593 GCAAAGTGATGACTTGAAGAAGAAGT 60.239 38.462 0.00 0.00 41.87 3.01
76 77 6.141462 GCAAAGTGATGACTTGAAGAAGAAG 58.859 40.000 0.00 0.00 41.87 2.85
77 78 5.009010 GGCAAAGTGATGACTTGAAGAAGAA 59.991 40.000 0.00 0.00 41.87 2.52
78 79 4.516698 GGCAAAGTGATGACTTGAAGAAGA 59.483 41.667 0.00 0.00 41.87 2.87
79 80 4.612259 CGGCAAAGTGATGACTTGAAGAAG 60.612 45.833 0.00 0.00 41.87 2.85
80 81 3.250762 CGGCAAAGTGATGACTTGAAGAA 59.749 43.478 0.00 0.00 41.87 2.52
81 82 2.807967 CGGCAAAGTGATGACTTGAAGA 59.192 45.455 0.00 0.00 41.87 2.87
82 83 2.807967 TCGGCAAAGTGATGACTTGAAG 59.192 45.455 0.00 0.00 41.87 3.02
83 84 2.844946 TCGGCAAAGTGATGACTTGAA 58.155 42.857 0.00 0.00 41.87 2.69
84 85 2.542020 TCGGCAAAGTGATGACTTGA 57.458 45.000 0.00 0.00 41.87 3.02
85 86 3.624326 TTTCGGCAAAGTGATGACTTG 57.376 42.857 0.00 0.00 41.87 3.16
86 87 4.647424 TTTTTCGGCAAAGTGATGACTT 57.353 36.364 0.00 0.00 44.79 3.01
104 105 7.599171 ACTTGATTTTTATCGATCCCGTTTTT 58.401 30.769 0.00 0.00 37.05 1.94
105 106 7.120726 AGACTTGATTTTTATCGATCCCGTTTT 59.879 33.333 0.00 0.00 37.05 2.43
106 107 6.598064 AGACTTGATTTTTATCGATCCCGTTT 59.402 34.615 0.00 0.00 37.05 3.60
107 108 6.113411 AGACTTGATTTTTATCGATCCCGTT 58.887 36.000 0.00 0.00 37.05 4.44
108 109 5.671493 AGACTTGATTTTTATCGATCCCGT 58.329 37.500 0.00 0.00 37.05 5.28
109 110 6.604735 AAGACTTGATTTTTATCGATCCCG 57.395 37.500 0.00 0.00 37.07 5.14
110 111 7.915923 GGAAAAGACTTGATTTTTATCGATCCC 59.084 37.037 0.00 0.00 30.22 3.85
111 112 7.640240 CGGAAAAGACTTGATTTTTATCGATCC 59.360 37.037 0.00 0.00 31.10 3.36
112 113 8.388103 TCGGAAAAGACTTGATTTTTATCGATC 58.612 33.333 0.00 0.00 32.46 3.69
113 114 8.263940 TCGGAAAAGACTTGATTTTTATCGAT 57.736 30.769 2.16 2.16 32.46 3.59
114 115 7.661127 TCGGAAAAGACTTGATTTTTATCGA 57.339 32.000 0.00 0.00 33.68 3.59
115 116 8.015658 AGTTCGGAAAAGACTTGATTTTTATCG 58.984 33.333 0.00 0.00 30.22 2.92
116 117 9.331106 GAGTTCGGAAAAGACTTGATTTTTATC 57.669 33.333 0.00 0.00 30.22 1.75
117 118 8.297426 GGAGTTCGGAAAAGACTTGATTTTTAT 58.703 33.333 0.00 0.00 30.22 1.40
118 119 7.519328 CGGAGTTCGGAAAAGACTTGATTTTTA 60.519 37.037 0.00 0.00 34.75 1.52
119 120 6.504398 GGAGTTCGGAAAAGACTTGATTTTT 58.496 36.000 0.00 0.00 30.22 1.94
120 121 5.277828 CGGAGTTCGGAAAAGACTTGATTTT 60.278 40.000 0.00 0.00 34.75 1.82
121 122 4.213482 CGGAGTTCGGAAAAGACTTGATTT 59.787 41.667 0.00 0.00 34.75 2.17
122 123 3.746492 CGGAGTTCGGAAAAGACTTGATT 59.254 43.478 0.00 0.00 34.75 2.57
123 124 3.006537 TCGGAGTTCGGAAAAGACTTGAT 59.993 43.478 0.00 0.00 39.77 2.57
124 125 2.363038 TCGGAGTTCGGAAAAGACTTGA 59.637 45.455 0.00 0.00 39.77 3.02
125 126 2.475487 GTCGGAGTTCGGAAAAGACTTG 59.525 50.000 0.00 0.00 39.77 3.16
126 127 2.364647 AGTCGGAGTTCGGAAAAGACTT 59.635 45.455 10.70 0.00 39.77 3.01
127 128 1.962100 AGTCGGAGTTCGGAAAAGACT 59.038 47.619 10.70 10.70 39.77 3.24
128 129 2.059541 CAGTCGGAGTTCGGAAAAGAC 58.940 52.381 0.00 0.50 39.77 3.01
129 130 1.000506 CCAGTCGGAGTTCGGAAAAGA 59.999 52.381 0.00 0.00 39.77 2.52
130 131 1.270147 ACCAGTCGGAGTTCGGAAAAG 60.270 52.381 0.00 0.00 39.77 2.27
131 132 0.754472 ACCAGTCGGAGTTCGGAAAA 59.246 50.000 0.00 0.00 39.77 2.29
132 133 1.270550 GTACCAGTCGGAGTTCGGAAA 59.729 52.381 0.00 0.00 39.77 3.13
133 134 0.883833 GTACCAGTCGGAGTTCGGAA 59.116 55.000 0.00 0.00 39.77 4.30
134 135 0.962356 GGTACCAGTCGGAGTTCGGA 60.962 60.000 7.15 0.00 39.77 4.55
135 136 0.964358 AGGTACCAGTCGGAGTTCGG 60.964 60.000 15.94 0.00 39.77 4.30
136 137 0.450983 GAGGTACCAGTCGGAGTTCG 59.549 60.000 15.94 0.00 40.90 3.95
137 138 0.450983 CGAGGTACCAGTCGGAGTTC 59.549 60.000 15.94 0.00 35.59 3.01
138 139 2.564471 CGAGGTACCAGTCGGAGTT 58.436 57.895 15.94 0.00 35.59 3.01
139 140 4.315588 CGAGGTACCAGTCGGAGT 57.684 61.111 15.94 0.00 35.59 3.85
143 144 2.029649 TCTTTTTCCGAGGTACCAGTCG 60.030 50.000 15.94 15.33 35.91 4.18
144 145 3.243975 TGTCTTTTTCCGAGGTACCAGTC 60.244 47.826 15.94 2.52 0.00 3.51
145 146 2.701951 TGTCTTTTTCCGAGGTACCAGT 59.298 45.455 15.94 0.00 0.00 4.00
146 147 3.396260 TGTCTTTTTCCGAGGTACCAG 57.604 47.619 15.94 7.58 0.00 4.00
147 148 3.842007 TTGTCTTTTTCCGAGGTACCA 57.158 42.857 15.94 0.00 0.00 3.25
148 149 4.874396 CCTATTGTCTTTTTCCGAGGTACC 59.126 45.833 2.73 2.73 0.00 3.34
149 150 5.727434 TCCTATTGTCTTTTTCCGAGGTAC 58.273 41.667 0.00 0.00 0.00 3.34
150 151 6.168389 GTTCCTATTGTCTTTTTCCGAGGTA 58.832 40.000 0.00 0.00 0.00 3.08
151 152 4.903045 TCCTATTGTCTTTTTCCGAGGT 57.097 40.909 0.00 0.00 0.00 3.85
152 153 5.001232 TGTTCCTATTGTCTTTTTCCGAGG 58.999 41.667 0.00 0.00 0.00 4.63
153 154 6.403636 CCATGTTCCTATTGTCTTTTTCCGAG 60.404 42.308 0.00 0.00 0.00 4.63
154 155 5.414454 CCATGTTCCTATTGTCTTTTTCCGA 59.586 40.000 0.00 0.00 0.00 4.55
155 156 5.393027 CCCATGTTCCTATTGTCTTTTTCCG 60.393 44.000 0.00 0.00 0.00 4.30
156 157 5.624509 GCCCATGTTCCTATTGTCTTTTTCC 60.625 44.000 0.00 0.00 0.00 3.13
157 158 5.047377 TGCCCATGTTCCTATTGTCTTTTTC 60.047 40.000 0.00 0.00 0.00 2.29
158 159 4.837860 TGCCCATGTTCCTATTGTCTTTTT 59.162 37.500 0.00 0.00 0.00 1.94
159 160 4.415596 TGCCCATGTTCCTATTGTCTTTT 58.584 39.130 0.00 0.00 0.00 2.27
160 161 4.046286 TGCCCATGTTCCTATTGTCTTT 57.954 40.909 0.00 0.00 0.00 2.52
161 162 3.737559 TGCCCATGTTCCTATTGTCTT 57.262 42.857 0.00 0.00 0.00 3.01
162 163 3.959495 ATGCCCATGTTCCTATTGTCT 57.041 42.857 0.00 0.00 0.00 3.41
163 164 6.040842 ACAAATATGCCCATGTTCCTATTGTC 59.959 38.462 0.00 0.00 0.00 3.18
164 165 5.898972 ACAAATATGCCCATGTTCCTATTGT 59.101 36.000 0.00 0.00 0.00 2.71
165 166 6.218019 CACAAATATGCCCATGTTCCTATTG 58.782 40.000 0.00 0.00 0.00 1.90
166 167 5.221501 GCACAAATATGCCCATGTTCCTATT 60.222 40.000 0.00 0.00 39.86 1.73
167 168 4.281688 GCACAAATATGCCCATGTTCCTAT 59.718 41.667 0.00 0.00 39.86 2.57
168 169 3.636300 GCACAAATATGCCCATGTTCCTA 59.364 43.478 0.00 0.00 39.86 2.94
169 170 2.431782 GCACAAATATGCCCATGTTCCT 59.568 45.455 0.00 0.00 39.86 3.36
170 171 2.799207 CGCACAAATATGCCCATGTTCC 60.799 50.000 0.00 0.00 42.99 3.62
171 172 2.462889 CGCACAAATATGCCCATGTTC 58.537 47.619 0.00 0.00 42.99 3.18
172 173 1.471327 GCGCACAAATATGCCCATGTT 60.471 47.619 0.30 0.00 42.99 2.71
173 174 0.102844 GCGCACAAATATGCCCATGT 59.897 50.000 0.30 0.00 42.99 3.21
174 175 0.102663 TGCGCACAAATATGCCCATG 59.897 50.000 5.66 0.00 42.99 3.66
175 176 0.102844 GTGCGCACAAATATGCCCAT 59.897 50.000 34.52 0.00 42.99 4.00
176 177 1.510383 GTGCGCACAAATATGCCCA 59.490 52.632 34.52 0.00 42.99 5.36
177 178 1.226945 GGTGCGCACAAATATGCCC 60.227 57.895 38.60 17.12 42.99 5.36
178 179 1.586042 CGGTGCGCACAAATATGCC 60.586 57.895 38.60 19.98 42.99 4.40
179 180 0.179176 TTCGGTGCGCACAAATATGC 60.179 50.000 38.60 20.11 42.48 3.14
180 181 2.473530 ATTCGGTGCGCACAAATATG 57.526 45.000 38.60 21.03 0.00 1.78
181 182 4.624336 TTAATTCGGTGCGCACAAATAT 57.376 36.364 38.60 25.37 0.00 1.28
182 183 4.624336 ATTAATTCGGTGCGCACAAATA 57.376 36.364 38.60 22.80 0.00 1.40
183 184 2.999507 TTAATTCGGTGCGCACAAAT 57.000 40.000 38.60 31.40 0.00 2.32
184 185 2.999507 ATTAATTCGGTGCGCACAAA 57.000 40.000 38.60 30.72 0.00 2.83
185 186 3.685272 TCTTATTAATTCGGTGCGCACAA 59.315 39.130 38.60 26.70 0.00 3.33
186 187 3.263261 TCTTATTAATTCGGTGCGCACA 58.737 40.909 38.60 21.64 0.00 4.57
187 188 3.936902 TCTTATTAATTCGGTGCGCAC 57.063 42.857 32.15 32.15 0.00 5.34
188 189 5.493133 AATTCTTATTAATTCGGTGCGCA 57.507 34.783 5.66 5.66 0.00 6.09
189 190 7.901874 TTTAATTCTTATTAATTCGGTGCGC 57.098 32.000 0.00 0.00 36.41 6.09
190 191 8.901748 CCATTTAATTCTTATTAATTCGGTGCG 58.098 33.333 0.00 0.00 36.41 5.34
191 192 8.699749 GCCATTTAATTCTTATTAATTCGGTGC 58.300 33.333 0.00 0.00 36.41 5.01
192 193 9.191995 GGCCATTTAATTCTTATTAATTCGGTG 57.808 33.333 0.00 0.00 36.41 4.94
193 194 9.143155 AGGCCATTTAATTCTTATTAATTCGGT 57.857 29.630 5.01 0.00 36.41 4.69
194 195 9.626045 GAGGCCATTTAATTCTTATTAATTCGG 57.374 33.333 5.01 0.00 36.41 4.30
195 196 9.626045 GGAGGCCATTTAATTCTTATTAATTCG 57.374 33.333 5.01 0.00 36.41 3.34
200 201 9.226606 CGTATGGAGGCCATTTAATTCTTATTA 57.773 33.333 5.01 0.00 42.23 0.98
201 202 7.942341 TCGTATGGAGGCCATTTAATTCTTATT 59.058 33.333 5.01 0.00 42.23 1.40
202 203 7.390718 GTCGTATGGAGGCCATTTAATTCTTAT 59.609 37.037 5.01 0.00 42.23 1.73
203 204 6.708949 GTCGTATGGAGGCCATTTAATTCTTA 59.291 38.462 5.01 0.00 42.23 2.10
204 205 5.531287 GTCGTATGGAGGCCATTTAATTCTT 59.469 40.000 5.01 0.00 42.23 2.52
205 206 5.063880 GTCGTATGGAGGCCATTTAATTCT 58.936 41.667 5.01 0.00 42.23 2.40
206 207 4.819630 TGTCGTATGGAGGCCATTTAATTC 59.180 41.667 5.01 0.00 42.23 2.17
207 208 4.787551 TGTCGTATGGAGGCCATTTAATT 58.212 39.130 5.01 0.00 42.23 1.40
208 209 4.431416 TGTCGTATGGAGGCCATTTAAT 57.569 40.909 5.01 0.00 42.23 1.40
209 210 3.916359 TGTCGTATGGAGGCCATTTAA 57.084 42.857 5.01 0.00 42.23 1.52
210 211 3.389656 TGATGTCGTATGGAGGCCATTTA 59.610 43.478 5.01 0.00 42.23 1.40
211 212 2.172505 TGATGTCGTATGGAGGCCATTT 59.827 45.455 5.01 0.00 42.23 2.32
212 213 1.768275 TGATGTCGTATGGAGGCCATT 59.232 47.619 5.01 0.00 42.23 3.16
213 214 1.345741 CTGATGTCGTATGGAGGCCAT 59.654 52.381 5.01 4.18 46.99 4.40
214 215 0.752658 CTGATGTCGTATGGAGGCCA 59.247 55.000 5.01 0.00 38.19 5.36
215 216 0.753262 ACTGATGTCGTATGGAGGCC 59.247 55.000 0.00 0.00 0.00 5.19
216 217 2.604046 AACTGATGTCGTATGGAGGC 57.396 50.000 0.00 0.00 0.00 4.70
217 218 3.861840 ACAAACTGATGTCGTATGGAGG 58.138 45.455 0.00 0.00 0.00 4.30
227 228 2.158623 TGCTGGAAGGACAAACTGATGT 60.159 45.455 0.00 0.00 35.90 3.06
228 229 2.507484 TGCTGGAAGGACAAACTGATG 58.493 47.619 0.00 0.00 0.00 3.07
229 230 2.957402 TGCTGGAAGGACAAACTGAT 57.043 45.000 0.00 0.00 0.00 2.90
230 231 2.553028 GGATGCTGGAAGGACAAACTGA 60.553 50.000 0.00 0.00 36.81 3.41
231 232 1.815003 GGATGCTGGAAGGACAAACTG 59.185 52.381 0.00 0.00 36.81 3.16
232 233 1.272147 GGGATGCTGGAAGGACAAACT 60.272 52.381 0.00 0.00 36.81 2.66
233 234 1.177401 GGGATGCTGGAAGGACAAAC 58.823 55.000 0.00 0.00 36.81 2.93
234 235 0.776810 TGGGATGCTGGAAGGACAAA 59.223 50.000 0.00 0.00 36.81 2.83
235 236 0.776810 TTGGGATGCTGGAAGGACAA 59.223 50.000 0.00 0.00 36.81 3.18
236 237 1.002069 ATTGGGATGCTGGAAGGACA 58.998 50.000 0.00 0.00 36.81 4.02
237 238 2.149973 AATTGGGATGCTGGAAGGAC 57.850 50.000 0.00 0.00 36.81 3.85
238 239 2.312741 AGAAATTGGGATGCTGGAAGGA 59.687 45.455 0.00 0.00 40.11 3.36
239 240 2.743553 AGAAATTGGGATGCTGGAAGG 58.256 47.619 0.00 0.00 0.00 3.46
240 241 5.595542 TGATAAGAAATTGGGATGCTGGAAG 59.404 40.000 0.00 0.00 0.00 3.46
241 242 5.517924 TGATAAGAAATTGGGATGCTGGAA 58.482 37.500 0.00 0.00 0.00 3.53
242 243 5.128033 TGATAAGAAATTGGGATGCTGGA 57.872 39.130 0.00 0.00 0.00 3.86
243 244 5.857471 TTGATAAGAAATTGGGATGCTGG 57.143 39.130 0.00 0.00 0.00 4.85
244 245 7.494211 TGATTTGATAAGAAATTGGGATGCTG 58.506 34.615 0.00 0.00 0.00 4.41
245 246 7.664552 TGATTTGATAAGAAATTGGGATGCT 57.335 32.000 0.00 0.00 0.00 3.79
246 247 8.897872 ATTGATTTGATAAGAAATTGGGATGC 57.102 30.769 0.00 0.00 0.00 3.91
247 248 9.485206 GGATTGATTTGATAAGAAATTGGGATG 57.515 33.333 0.00 0.00 0.00 3.51
248 249 8.654094 GGGATTGATTTGATAAGAAATTGGGAT 58.346 33.333 0.00 0.00 0.00 3.85
249 250 7.071071 GGGGATTGATTTGATAAGAAATTGGGA 59.929 37.037 0.00 0.00 0.00 4.37
250 251 7.147514 TGGGGATTGATTTGATAAGAAATTGGG 60.148 37.037 0.00 0.00 0.00 4.12
251 252 7.794041 TGGGGATTGATTTGATAAGAAATTGG 58.206 34.615 0.00 0.00 0.00 3.16
252 253 9.841295 ATTGGGGATTGATTTGATAAGAAATTG 57.159 29.630 0.00 0.00 0.00 2.32
253 254 9.841295 CATTGGGGATTGATTTGATAAGAAATT 57.159 29.630 0.00 0.00 0.00 1.82
254 255 7.935210 GCATTGGGGATTGATTTGATAAGAAAT 59.065 33.333 0.00 0.00 0.00 2.17
255 256 7.092979 TGCATTGGGGATTGATTTGATAAGAAA 60.093 33.333 0.00 0.00 0.00 2.52
256 257 6.383436 TGCATTGGGGATTGATTTGATAAGAA 59.617 34.615 0.00 0.00 0.00 2.52
257 258 5.898397 TGCATTGGGGATTGATTTGATAAGA 59.102 36.000 0.00 0.00 0.00 2.10
258 259 5.987347 GTGCATTGGGGATTGATTTGATAAG 59.013 40.000 0.00 0.00 0.00 1.73
259 260 5.662208 AGTGCATTGGGGATTGATTTGATAA 59.338 36.000 0.00 0.00 0.00 1.75
260 261 5.210430 AGTGCATTGGGGATTGATTTGATA 58.790 37.500 0.00 0.00 0.00 2.15
261 262 4.035112 AGTGCATTGGGGATTGATTTGAT 58.965 39.130 0.00 0.00 0.00 2.57
262 263 3.443052 AGTGCATTGGGGATTGATTTGA 58.557 40.909 0.00 0.00 0.00 2.69
263 264 3.899052 AGTGCATTGGGGATTGATTTG 57.101 42.857 0.00 0.00 0.00 2.32
264 265 3.198417 GGAAGTGCATTGGGGATTGATTT 59.802 43.478 0.00 0.00 0.00 2.17
265 266 2.767960 GGAAGTGCATTGGGGATTGATT 59.232 45.455 0.00 0.00 0.00 2.57
266 267 2.292389 TGGAAGTGCATTGGGGATTGAT 60.292 45.455 0.00 0.00 0.00 2.57
267 268 1.076841 TGGAAGTGCATTGGGGATTGA 59.923 47.619 0.00 0.00 0.00 2.57
268 269 1.559368 TGGAAGTGCATTGGGGATTG 58.441 50.000 0.00 0.00 0.00 2.67
269 270 2.555732 ATGGAAGTGCATTGGGGATT 57.444 45.000 0.00 0.00 0.00 3.01
270 271 2.023695 AGAATGGAAGTGCATTGGGGAT 60.024 45.455 2.49 0.00 0.00 3.85
271 272 1.358787 AGAATGGAAGTGCATTGGGGA 59.641 47.619 2.49 0.00 0.00 4.81
272 273 1.753073 GAGAATGGAAGTGCATTGGGG 59.247 52.381 2.49 0.00 0.00 4.96
273 274 2.731572 AGAGAATGGAAGTGCATTGGG 58.268 47.619 2.49 0.00 0.00 4.12
274 275 6.127535 ACAAATAGAGAATGGAAGTGCATTGG 60.128 38.462 2.49 0.00 0.00 3.16
275 276 6.860080 ACAAATAGAGAATGGAAGTGCATTG 58.140 36.000 2.49 0.00 0.00 2.82
276 277 7.472334 AACAAATAGAGAATGGAAGTGCATT 57.528 32.000 0.00 0.00 0.00 3.56
277 278 7.201767 GCTAACAAATAGAGAATGGAAGTGCAT 60.202 37.037 0.00 0.00 33.04 3.96
278 279 6.094048 GCTAACAAATAGAGAATGGAAGTGCA 59.906 38.462 0.00 0.00 33.04 4.57
279 280 6.317391 AGCTAACAAATAGAGAATGGAAGTGC 59.683 38.462 0.00 0.00 33.04 4.40
280 281 7.856145 AGCTAACAAATAGAGAATGGAAGTG 57.144 36.000 0.00 0.00 33.04 3.16
281 282 9.384764 GTAAGCTAACAAATAGAGAATGGAAGT 57.615 33.333 0.00 0.00 33.04 3.01
282 283 8.543774 CGTAAGCTAACAAATAGAGAATGGAAG 58.456 37.037 0.00 0.00 33.04 3.46
283 284 8.255206 TCGTAAGCTAACAAATAGAGAATGGAA 58.745 33.333 0.00 0.00 33.04 3.53
284 285 7.778083 TCGTAAGCTAACAAATAGAGAATGGA 58.222 34.615 0.00 0.00 33.04 3.41
285 286 8.491152 CATCGTAAGCTAACAAATAGAGAATGG 58.509 37.037 0.00 0.00 33.04 3.16
286 287 9.249457 TCATCGTAAGCTAACAAATAGAGAATG 57.751 33.333 0.00 0.00 33.04 2.67
287 288 9.988815 ATCATCGTAAGCTAACAAATAGAGAAT 57.011 29.630 0.00 0.00 33.04 2.40
288 289 9.249457 CATCATCGTAAGCTAACAAATAGAGAA 57.751 33.333 0.00 0.00 33.04 2.87
289 290 8.630037 TCATCATCGTAAGCTAACAAATAGAGA 58.370 33.333 0.00 0.00 33.04 3.10
290 291 8.803201 TCATCATCGTAAGCTAACAAATAGAG 57.197 34.615 0.00 0.00 33.04 2.43
291 292 9.764363 ATTCATCATCGTAAGCTAACAAATAGA 57.236 29.630 0.00 0.00 33.04 1.98
292 293 9.803130 CATTCATCATCGTAAGCTAACAAATAG 57.197 33.333 0.00 0.00 34.52 1.73
293 294 8.773645 CCATTCATCATCGTAAGCTAACAAATA 58.226 33.333 0.00 0.00 37.18 1.40
294 295 7.255242 CCCATTCATCATCGTAAGCTAACAAAT 60.255 37.037 0.00 0.00 37.18 2.32
295 296 6.038161 CCCATTCATCATCGTAAGCTAACAAA 59.962 38.462 0.00 0.00 37.18 2.83
296 297 5.527214 CCCATTCATCATCGTAAGCTAACAA 59.473 40.000 0.00 0.00 37.18 2.83
297 298 5.056480 CCCATTCATCATCGTAAGCTAACA 58.944 41.667 0.00 0.00 37.18 2.41
298 299 5.057149 ACCCATTCATCATCGTAAGCTAAC 58.943 41.667 0.00 0.00 37.18 2.34
299 300 5.290493 ACCCATTCATCATCGTAAGCTAA 57.710 39.130 0.00 0.00 37.18 3.09
300 301 4.955811 ACCCATTCATCATCGTAAGCTA 57.044 40.909 0.00 0.00 37.18 3.32
301 302 3.845781 ACCCATTCATCATCGTAAGCT 57.154 42.857 0.00 0.00 37.18 3.74
302 303 5.581085 GGTATACCCATTCATCATCGTAAGC 59.419 44.000 11.17 0.00 37.18 3.09
303 304 6.936279 AGGTATACCCATTCATCATCGTAAG 58.064 40.000 18.65 0.00 36.42 2.34
304 305 6.928348 AGGTATACCCATTCATCATCGTAA 57.072 37.500 18.65 0.00 36.42 3.18
305 306 8.425237 TTTAGGTATACCCATTCATCATCGTA 57.575 34.615 18.65 0.00 36.42 3.43
306 307 6.928348 TTAGGTATACCCATTCATCATCGT 57.072 37.500 18.65 0.00 36.42 3.73
307 308 9.314321 GTATTTAGGTATACCCATTCATCATCG 57.686 37.037 18.65 0.00 36.42 3.84
310 311 9.958180 CATGTATTTAGGTATACCCATTCATCA 57.042 33.333 18.65 10.26 36.42 3.07
315 316 9.807921 CCTTTCATGTATTTAGGTATACCCATT 57.192 33.333 18.65 2.71 36.42 3.16
316 317 8.955794 ACCTTTCATGTATTTAGGTATACCCAT 58.044 33.333 18.65 10.38 37.45 4.00
317 318 8.339720 ACCTTTCATGTATTTAGGTATACCCA 57.660 34.615 18.65 8.43 37.45 4.51
324 325 9.636789 GGGTATTTACCTTTCATGTATTTAGGT 57.363 33.333 6.71 0.00 45.72 3.08
325 326 9.074576 GGGGTATTTACCTTTCATGTATTTAGG 57.925 37.037 6.71 0.00 45.72 2.69
326 327 8.780249 CGGGGTATTTACCTTTCATGTATTTAG 58.220 37.037 6.71 0.00 45.72 1.85
327 328 7.720515 CCGGGGTATTTACCTTTCATGTATTTA 59.279 37.037 6.71 0.00 45.72 1.40
328 329 6.548251 CCGGGGTATTTACCTTTCATGTATTT 59.452 38.462 6.71 0.00 45.72 1.40
329 330 6.066032 CCGGGGTATTTACCTTTCATGTATT 58.934 40.000 6.71 0.00 45.72 1.89
330 331 5.133153 ACCGGGGTATTTACCTTTCATGTAT 59.867 40.000 6.32 0.00 45.72 2.29
331 332 4.474287 ACCGGGGTATTTACCTTTCATGTA 59.526 41.667 6.32 0.00 45.72 2.29
332 333 3.267551 ACCGGGGTATTTACCTTTCATGT 59.732 43.478 6.32 0.00 45.72 3.21
333 334 3.893521 ACCGGGGTATTTACCTTTCATG 58.106 45.455 6.32 0.00 45.72 3.07
334 335 4.018233 TGAACCGGGGTATTTACCTTTCAT 60.018 41.667 6.32 0.00 45.72 2.57
335 336 3.330110 TGAACCGGGGTATTTACCTTTCA 59.670 43.478 6.32 0.00 45.72 2.69
336 337 3.691118 GTGAACCGGGGTATTTACCTTTC 59.309 47.826 6.32 0.00 45.72 2.62
337 338 3.074242 TGTGAACCGGGGTATTTACCTTT 59.926 43.478 6.32 0.00 45.72 3.11
338 339 2.643801 TGTGAACCGGGGTATTTACCTT 59.356 45.455 6.32 0.00 45.72 3.50
339 340 2.268107 TGTGAACCGGGGTATTTACCT 58.732 47.619 6.32 0.00 45.72 3.08
340 341 2.749076 GTTGTGAACCGGGGTATTTACC 59.251 50.000 6.32 0.00 45.71 2.85
341 342 2.749076 GGTTGTGAACCGGGGTATTTAC 59.251 50.000 6.32 0.00 42.62 2.01
342 343 3.070476 GGTTGTGAACCGGGGTATTTA 57.930 47.619 6.32 0.00 42.62 1.40
343 344 1.913778 GGTTGTGAACCGGGGTATTT 58.086 50.000 6.32 0.00 42.62 1.40
344 345 3.656457 GGTTGTGAACCGGGGTATT 57.344 52.632 6.32 0.00 42.62 1.89
353 354 7.372396 CGTATAAGCAATTATTCGGTTGTGAAC 59.628 37.037 0.00 0.00 0.00 3.18
354 355 7.403421 CGTATAAGCAATTATTCGGTTGTGAA 58.597 34.615 0.00 0.00 0.00 3.18
355 356 6.510478 GCGTATAAGCAATTATTCGGTTGTGA 60.510 38.462 5.73 0.00 37.05 3.58
356 357 5.619607 GCGTATAAGCAATTATTCGGTTGTG 59.380 40.000 5.73 0.00 37.05 3.33
357 358 5.277634 GGCGTATAAGCAATTATTCGGTTGT 60.278 40.000 12.77 0.00 39.27 3.32
358 359 5.049680 AGGCGTATAAGCAATTATTCGGTTG 60.050 40.000 12.77 0.00 39.27 3.77
359 360 5.061179 AGGCGTATAAGCAATTATTCGGTT 58.939 37.500 12.77 0.00 39.27 4.44
360 361 4.638304 AGGCGTATAAGCAATTATTCGGT 58.362 39.130 12.77 0.00 39.27 4.69
361 362 4.929808 AGAGGCGTATAAGCAATTATTCGG 59.070 41.667 12.77 0.00 39.27 4.30
362 363 6.073765 ACAAGAGGCGTATAAGCAATTATTCG 60.074 38.462 12.77 3.56 39.27 3.34
363 364 7.190920 ACAAGAGGCGTATAAGCAATTATTC 57.809 36.000 12.77 0.95 39.27 1.75
364 365 7.568199 AACAAGAGGCGTATAAGCAATTATT 57.432 32.000 12.77 0.00 39.27 1.40
365 366 8.671384 TTAACAAGAGGCGTATAAGCAATTAT 57.329 30.769 12.77 0.00 39.27 1.28
366 367 8.495361 TTTAACAAGAGGCGTATAAGCAATTA 57.505 30.769 12.77 0.00 39.27 1.40
367 368 6.995511 TTAACAAGAGGCGTATAAGCAATT 57.004 33.333 12.77 1.30 39.27 2.32
368 369 6.995511 TTTAACAAGAGGCGTATAAGCAAT 57.004 33.333 12.77 0.23 39.27 3.56
369 370 6.995511 ATTTAACAAGAGGCGTATAAGCAA 57.004 33.333 12.77 0.00 39.27 3.91
370 371 6.199531 CGTATTTAACAAGAGGCGTATAAGCA 59.800 38.462 12.77 0.00 39.27 3.91
371 372 6.418819 TCGTATTTAACAAGAGGCGTATAAGC 59.581 38.462 1.57 1.57 0.00 3.09
372 373 7.919313 TCGTATTTAACAAGAGGCGTATAAG 57.081 36.000 0.00 0.00 0.00 1.73
373 374 8.594687 GTTTCGTATTTAACAAGAGGCGTATAA 58.405 33.333 0.00 0.00 0.00 0.98
374 375 7.222611 GGTTTCGTATTTAACAAGAGGCGTATA 59.777 37.037 0.00 0.00 0.00 1.47
375 376 6.036408 GGTTTCGTATTTAACAAGAGGCGTAT 59.964 38.462 0.00 0.00 0.00 3.06
376 377 5.348451 GGTTTCGTATTTAACAAGAGGCGTA 59.652 40.000 0.00 0.00 0.00 4.42
377 378 4.152938 GGTTTCGTATTTAACAAGAGGCGT 59.847 41.667 0.00 0.00 0.00 5.68
378 379 4.152759 TGGTTTCGTATTTAACAAGAGGCG 59.847 41.667 0.00 0.00 0.00 5.52
379 380 5.049267 TGTGGTTTCGTATTTAACAAGAGGC 60.049 40.000 0.00 0.00 0.00 4.70
380 381 6.548441 TGTGGTTTCGTATTTAACAAGAGG 57.452 37.500 0.00 0.00 0.00 3.69
381 382 8.714179 TGTATGTGGTTTCGTATTTAACAAGAG 58.286 33.333 0.00 0.00 0.00 2.85
382 383 8.604640 TGTATGTGGTTTCGTATTTAACAAGA 57.395 30.769 0.00 0.00 0.00 3.02
383 384 8.500773 ACTGTATGTGGTTTCGTATTTAACAAG 58.499 33.333 0.00 0.00 0.00 3.16
384 385 8.380743 ACTGTATGTGGTTTCGTATTTAACAA 57.619 30.769 0.00 0.00 0.00 2.83
385 386 7.966246 ACTGTATGTGGTTTCGTATTTAACA 57.034 32.000 0.00 0.00 0.00 2.41
386 387 9.143631 ACTACTGTATGTGGTTTCGTATTTAAC 57.856 33.333 0.00 0.00 37.02 2.01
387 388 9.709495 AACTACTGTATGTGGTTTCGTATTTAA 57.291 29.630 0.00 0.00 46.04 1.52
403 404 9.939802 AAAATAGGACGAAAAGAACTACTGTAT 57.060 29.630 0.00 0.00 0.00 2.29
408 409 6.367149 ACGGAAAATAGGACGAAAAGAACTAC 59.633 38.462 0.00 0.00 0.00 2.73
409 410 6.458210 ACGGAAAATAGGACGAAAAGAACTA 58.542 36.000 0.00 0.00 0.00 2.24
410 411 5.303165 ACGGAAAATAGGACGAAAAGAACT 58.697 37.500 0.00 0.00 0.00 3.01
442 443 2.436646 GGGTGCACGGATCTGGTG 60.437 66.667 11.45 9.52 38.42 4.17
513 514 9.077674 CGATGATAGAGCCTAATAAACACATAC 57.922 37.037 0.00 0.00 0.00 2.39
555 556 4.515191 TGCATCTGTCAAGACTTTACCAAC 59.485 41.667 1.53 0.00 34.48 3.77
559 560 9.922305 GTATTTATGCATCTGTCAAGACTTTAC 57.078 33.333 0.19 0.00 34.48 2.01
573 574 7.986085 AAGTGTATCCCTGTATTTATGCATC 57.014 36.000 0.19 0.00 0.00 3.91
587 588 7.492994 GTCTGAGTGAATCTAAAAGTGTATCCC 59.507 40.741 0.00 0.00 0.00 3.85
624 625 3.117745 TGAGATGAGATTCATGGGTGGT 58.882 45.455 0.00 0.00 37.20 4.16
625 626 3.851458 TGAGATGAGATTCATGGGTGG 57.149 47.619 0.00 0.00 37.20 4.61
626 627 4.325119 GGATGAGATGAGATTCATGGGTG 58.675 47.826 0.00 0.00 37.20 4.61
673 678 3.323691 GGTAAAAGAAAACCATGGCCTGT 59.676 43.478 13.04 0.00 35.73 4.00
674 679 3.323403 TGGTAAAAGAAAACCATGGCCTG 59.677 43.478 13.04 0.00 40.84 4.85
675 680 3.578282 CTGGTAAAAGAAAACCATGGCCT 59.422 43.478 13.04 0.80 44.56 5.19
676 681 3.576550 TCTGGTAAAAGAAAACCATGGCC 59.423 43.478 13.04 0.00 44.56 5.36
677 682 4.809673 CTCTGGTAAAAGAAAACCATGGC 58.190 43.478 13.04 0.00 44.56 4.40
678 683 4.321974 GGCTCTGGTAAAAGAAAACCATGG 60.322 45.833 11.19 11.19 44.56 3.66
679 684 4.615912 CGGCTCTGGTAAAAGAAAACCATG 60.616 45.833 0.00 0.00 44.56 3.66
680 685 3.506067 CGGCTCTGGTAAAAGAAAACCAT 59.494 43.478 0.00 0.00 44.56 3.55
681 686 2.882137 CGGCTCTGGTAAAAGAAAACCA 59.118 45.455 0.00 0.00 43.47 3.67
682 687 2.882761 ACGGCTCTGGTAAAAGAAAACC 59.117 45.455 0.00 0.00 36.24 3.27
683 688 5.237996 AGTTACGGCTCTGGTAAAAGAAAAC 59.762 40.000 0.00 0.00 32.15 2.43
684 689 5.370679 AGTTACGGCTCTGGTAAAAGAAAA 58.629 37.500 0.00 0.00 32.15 2.29
685 690 4.964593 AGTTACGGCTCTGGTAAAAGAAA 58.035 39.130 0.00 0.00 32.15 2.52
686 691 4.612264 AGTTACGGCTCTGGTAAAAGAA 57.388 40.909 0.00 0.00 32.15 2.52
687 692 5.163478 GGATAGTTACGGCTCTGGTAAAAGA 60.163 44.000 0.00 0.00 32.15 2.52
688 693 5.048507 GGATAGTTACGGCTCTGGTAAAAG 58.951 45.833 0.00 0.00 32.15 2.27
689 694 4.467082 TGGATAGTTACGGCTCTGGTAAAA 59.533 41.667 0.00 0.00 32.15 1.52
690 695 4.025360 TGGATAGTTACGGCTCTGGTAAA 58.975 43.478 0.00 0.00 32.15 2.01
691 696 3.634504 TGGATAGTTACGGCTCTGGTAA 58.365 45.455 0.00 0.00 0.00 2.85
692 697 3.301794 TGGATAGTTACGGCTCTGGTA 57.698 47.619 0.00 0.00 0.00 3.25
693 698 2.154567 TGGATAGTTACGGCTCTGGT 57.845 50.000 0.00 0.00 0.00 4.00
694 699 2.224066 CCTTGGATAGTTACGGCTCTGG 60.224 54.545 0.00 0.00 0.00 3.86
695 700 2.693591 TCCTTGGATAGTTACGGCTCTG 59.306 50.000 0.00 0.00 0.00 3.35
696 701 3.028094 TCCTTGGATAGTTACGGCTCT 57.972 47.619 0.00 0.00 0.00 4.09
697 702 3.654414 CATCCTTGGATAGTTACGGCTC 58.346 50.000 1.37 0.00 0.00 4.70
698 703 2.224305 GCATCCTTGGATAGTTACGGCT 60.224 50.000 1.37 0.00 0.00 5.52
760 765 5.920273 GCCTCTCGTTTCATCAAAATTTTCA 59.080 36.000 0.00 0.00 0.00 2.69
1020 1026 3.036783 GCACGACGCGTAGTCCTCT 62.037 63.158 22.43 0.00 46.92 3.69
1331 1340 0.169009 GATGCTCGCACCAAGAAACC 59.831 55.000 0.00 0.00 0.00 3.27
1510 1519 4.082408 AGAGGCTAAATTTGTTTTACGGCC 60.082 41.667 0.00 0.00 39.62 6.13
1544 1553 0.833287 CCACATCATCCTCCCGTTCT 59.167 55.000 0.00 0.00 0.00 3.01
1927 1961 2.206576 AGAAAGGGCGCAAGATTTCT 57.793 45.000 10.83 15.17 39.62 2.52
1939 1973 4.589216 TCAGACAAAATGCAAGAAAGGG 57.411 40.909 0.00 0.00 0.00 3.95
2187 2236 1.551883 AGGTTGCTCAAATCCAATGCC 59.448 47.619 0.00 0.00 0.00 4.40
2201 2250 4.681744 TCAATGAAACAGACAAAGGTTGC 58.318 39.130 0.00 0.00 0.00 4.17
2571 2623 3.340034 CAATCCAACAGCATTGCCAATT 58.660 40.909 4.70 0.00 0.00 2.32
2657 2709 1.750778 CAGTGAAGCTCTCCTCTCCTC 59.249 57.143 0.00 0.00 0.00 3.71
2696 2748 0.395586 AACAGTGCAGAGTTTGGGCA 60.396 50.000 0.00 0.00 34.70 5.36
2697 2749 0.746659 AAACAGTGCAGAGTTTGGGC 59.253 50.000 13.84 0.00 36.65 5.36
2701 2782 5.591099 CATACCAAAAACAGTGCAGAGTTT 58.409 37.500 9.90 9.90 39.46 2.66
2704 2785 3.568538 GCATACCAAAAACAGTGCAGAG 58.431 45.455 0.00 0.00 33.09 3.35
2785 2867 0.678048 CCCAGCCTTTCAGTGCTACC 60.678 60.000 0.00 0.00 35.69 3.18
2806 2888 4.774726 TGGCTCTATAAACAATGGCCAAAA 59.225 37.500 10.96 0.00 43.93 2.44
3075 3165 0.936297 CACTGAAAAACGCAGCTGCC 60.936 55.000 32.07 17.53 36.86 4.85
3311 5611 5.152623 TGTACTCCCTCTGTCTCAAAATG 57.847 43.478 0.00 0.00 0.00 2.32
3340 5640 8.567948 TGACAAGAACTTTCTTTATTGATCACC 58.432 33.333 0.00 0.00 44.70 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.