Multiple sequence alignment - TraesCS5A01G068500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G068500 chr5A 100.000 4791 0 0 1 4791 76906693 76911483 0.000000e+00 8848.0
1 TraesCS5A01G068500 chr5D 95.918 2989 91 14 861 3833 80370641 80373614 0.000000e+00 4815.0
2 TraesCS5A01G068500 chr5D 97.274 917 23 2 3876 4790 80373692 80374608 0.000000e+00 1554.0
3 TraesCS5A01G068500 chr5D 88.593 526 51 6 311 834 80369009 80369527 8.750000e-177 630.0
4 TraesCS5A01G068500 chr5D 79.935 309 50 11 287 590 455908828 455908527 2.900000e-52 217.0
5 TraesCS5A01G068500 chr5D 78.545 275 47 7 18 287 398079933 398079666 2.290000e-38 171.0
6 TraesCS5A01G068500 chr5D 95.455 44 0 2 4718 4760 566045048 566045090 8.600000e-08 69.4
7 TraesCS5A01G068500 chr5B 95.712 2962 94 11 885 3834 89231846 89234786 0.000000e+00 4735.0
8 TraesCS5A01G068500 chr5B 95.529 917 28 6 3876 4790 89234894 89235799 0.000000e+00 1454.0
9 TraesCS5A01G068500 chr5B 76.582 316 48 20 287 588 247631271 247630968 2.990000e-32 150.0
10 TraesCS5A01G068500 chr3D 87.251 251 29 3 287 534 124656541 124656291 2.820000e-72 283.0
11 TraesCS5A01G068500 chr3D 84.615 195 29 1 93 287 328364170 328364363 4.890000e-45 193.0
12 TraesCS5A01G068500 chr4A 81.967 305 45 10 288 588 415853638 415853340 2.860000e-62 250.0
13 TraesCS5A01G068500 chr4A 80.782 307 47 11 287 588 503687301 503687002 3.730000e-56 230.0
14 TraesCS5A01G068500 chr2D 81.944 288 43 6 2 287 208998156 208998436 8.020000e-58 235.0
15 TraesCS5A01G068500 chr2D 77.465 284 49 10 8 284 80042433 80042708 6.420000e-34 156.0
16 TraesCS5A01G068500 chr2D 97.778 45 1 0 4715 4759 565956093 565956137 1.430000e-10 78.7
17 TraesCS5A01G068500 chr4D 80.783 281 46 8 311 588 138760565 138760840 3.760000e-51 213.0
18 TraesCS5A01G068500 chr7B 79.936 314 41 20 287 588 674992228 674991925 1.350000e-50 211.0
19 TraesCS5A01G068500 chr6D 80.866 277 42 7 14 287 272651457 272651725 1.750000e-49 207.0
20 TraesCS5A01G068500 chr6D 79.927 274 39 9 21 287 125093201 125093465 2.280000e-43 187.0
21 TraesCS5A01G068500 chr6D 96.078 51 2 0 4713 4763 358980159 358980209 3.070000e-12 84.2
22 TraesCS5A01G068500 chr6B 81.111 270 40 7 14 280 433712244 433712505 6.290000e-49 206.0
23 TraesCS5A01G068500 chr6B 96.078 51 2 0 4713 4763 540594302 540594352 3.070000e-12 84.2
24 TraesCS5A01G068500 chr6B 96.078 51 2 0 4713 4763 560191898 560191848 3.070000e-12 84.2
25 TraesCS5A01G068500 chr1D 79.553 313 43 17 287 588 355424062 355424364 2.260000e-48 204.0
26 TraesCS5A01G068500 chr7A 82.969 229 29 9 287 509 435721905 435722129 1.050000e-46 198.0
27 TraesCS5A01G068500 chr7A 97.778 45 1 0 4715 4759 284728693 284728737 1.430000e-10 78.7
28 TraesCS5A01G068500 chr4B 79.021 286 53 7 304 587 227381235 227381515 6.330000e-44 189.0
29 TraesCS5A01G068500 chr2B 81.224 245 34 6 14 255 378441880 378442115 2.280000e-43 187.0
30 TraesCS5A01G068500 chr3B 83.590 195 31 1 93 287 421684131 421683938 1.060000e-41 182.0
31 TraesCS5A01G068500 chr1B 97.727 44 1 0 4716 4759 678047887 678047844 5.140000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G068500 chr5A 76906693 76911483 4790 False 8848.0 8848 100.000000 1 4791 1 chr5A.!!$F1 4790
1 TraesCS5A01G068500 chr5D 80369009 80374608 5599 False 2333.0 4815 93.928333 311 4790 3 chr5D.!!$F2 4479
2 TraesCS5A01G068500 chr5B 89231846 89235799 3953 False 3094.5 4735 95.620500 885 4790 2 chr5B.!!$F1 3905

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
107 108 0.104120 GGGTTTGGGTGTTTGAGCAC 59.896 55.000 0.00 0.0 38.56 4.40 F
1563 2653 0.105246 TCAATGTTGGGGTGGCCTTT 60.105 50.000 3.32 0.0 0.00 3.11 F
1566 2656 0.831711 ATGTTGGGGTGGCCTTTGTC 60.832 55.000 3.32 0.0 0.00 3.18 F
1672 2762 1.334869 CGGGAGATAAAGCAATGCACC 59.665 52.381 8.35 0.0 0.00 5.01 F
1964 3055 1.544246 GCACTGGAAAATGGGTACACC 59.456 52.381 0.00 0.0 40.81 4.16 F
2224 3315 1.915078 GCCTGGCCCAAGAGCTTAGA 61.915 60.000 7.66 0.0 0.00 2.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1650 2740 1.064758 TGCATTGCTTTATCTCCCGGT 60.065 47.619 10.49 0.0 0.00 5.28 R
2787 3878 0.746659 ACTTGTGCCTTGTGCTTTCC 59.253 50.000 0.00 0.0 42.00 3.13 R
3358 4449 5.007332 CAGTAACCGGATGTTAAAGTATGCC 59.993 44.000 9.46 0.0 41.00 4.40 R
3606 4699 7.732025 TCACTCTACATGTTTTAACTTGAGGA 58.268 34.615 2.30 9.9 37.47 3.71 R
3679 4783 1.545428 CCTGCAGCTACCCAAAGTCAA 60.545 52.381 8.66 0.0 0.00 3.18 R
4098 5270 3.258622 AGGACTTAACTGTCTCGGAAAGG 59.741 47.826 0.00 0.0 37.16 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.772886 TTAGGCATTAAGGGAGAAGACC 57.227 45.455 0.00 0.00 0.00 3.85
35 36 6.584185 GGAGAAGACCCAGATCTATACTTC 57.416 45.833 16.38 16.38 34.46 3.01
36 37 5.479027 GGAGAAGACCCAGATCTATACTTCC 59.521 48.000 18.60 13.43 34.69 3.46
37 38 6.031964 AGAAGACCCAGATCTATACTTCCA 57.968 41.667 18.60 0.00 34.69 3.53
38 39 5.836358 AGAAGACCCAGATCTATACTTCCAC 59.164 44.000 18.60 4.92 34.69 4.02
39 40 4.484912 AGACCCAGATCTATACTTCCACC 58.515 47.826 0.00 0.00 0.00 4.61
40 41 4.078571 AGACCCAGATCTATACTTCCACCA 60.079 45.833 0.00 0.00 0.00 4.17
41 42 4.631234 ACCCAGATCTATACTTCCACCAA 58.369 43.478 0.00 0.00 0.00 3.67
42 43 5.036916 ACCCAGATCTATACTTCCACCAAA 58.963 41.667 0.00 0.00 0.00 3.28
43 44 5.131142 ACCCAGATCTATACTTCCACCAAAG 59.869 44.000 0.00 0.00 0.00 2.77
44 45 5.455326 CCCAGATCTATACTTCCACCAAAGG 60.455 48.000 0.00 0.00 0.00 3.11
45 46 5.366768 CCAGATCTATACTTCCACCAAAGGA 59.633 44.000 0.00 0.00 35.41 3.36
46 47 6.126768 CCAGATCTATACTTCCACCAAAGGAA 60.127 42.308 0.00 0.00 45.12 3.36
64 65 4.251103 GGAAGTTTGATTCCCCCATACT 57.749 45.455 0.00 0.00 42.57 2.12
65 66 4.610333 GGAAGTTTGATTCCCCCATACTT 58.390 43.478 0.00 0.00 42.57 2.24
66 67 5.023452 GGAAGTTTGATTCCCCCATACTTT 58.977 41.667 0.00 0.00 42.57 2.66
67 68 5.127194 GGAAGTTTGATTCCCCCATACTTTC 59.873 44.000 0.00 0.00 42.57 2.62
68 69 5.269554 AGTTTGATTCCCCCATACTTTCA 57.730 39.130 0.00 0.00 0.00 2.69
69 70 5.016831 AGTTTGATTCCCCCATACTTTCAC 58.983 41.667 0.00 0.00 0.00 3.18
70 71 4.946160 TTGATTCCCCCATACTTTCACT 57.054 40.909 0.00 0.00 0.00 3.41
71 72 4.946160 TGATTCCCCCATACTTTCACTT 57.054 40.909 0.00 0.00 0.00 3.16
72 73 4.599041 TGATTCCCCCATACTTTCACTTG 58.401 43.478 0.00 0.00 0.00 3.16
73 74 2.507407 TCCCCCATACTTTCACTTGC 57.493 50.000 0.00 0.00 0.00 4.01
74 75 1.707989 TCCCCCATACTTTCACTTGCA 59.292 47.619 0.00 0.00 0.00 4.08
75 76 2.311542 TCCCCCATACTTTCACTTGCAT 59.688 45.455 0.00 0.00 0.00 3.96
76 77 2.689983 CCCCCATACTTTCACTTGCATC 59.310 50.000 0.00 0.00 0.00 3.91
77 78 3.624777 CCCCATACTTTCACTTGCATCT 58.375 45.455 0.00 0.00 0.00 2.90
78 79 4.019174 CCCCATACTTTCACTTGCATCTT 58.981 43.478 0.00 0.00 0.00 2.40
79 80 4.142315 CCCCATACTTTCACTTGCATCTTG 60.142 45.833 0.00 0.00 0.00 3.02
80 81 4.460382 CCCATACTTTCACTTGCATCTTGT 59.540 41.667 0.00 0.00 0.00 3.16
81 82 5.047802 CCCATACTTTCACTTGCATCTTGTT 60.048 40.000 0.00 0.00 0.00 2.83
82 83 6.150976 CCCATACTTTCACTTGCATCTTGTTA 59.849 38.462 0.00 0.00 0.00 2.41
83 84 7.023575 CCATACTTTCACTTGCATCTTGTTAC 58.976 38.462 0.00 0.00 0.00 2.50
84 85 7.094634 CCATACTTTCACTTGCATCTTGTTACT 60.095 37.037 0.00 0.00 0.00 2.24
85 86 6.305693 ACTTTCACTTGCATCTTGTTACTC 57.694 37.500 0.00 0.00 0.00 2.59
86 87 6.058183 ACTTTCACTTGCATCTTGTTACTCT 58.942 36.000 0.00 0.00 0.00 3.24
87 88 6.543831 ACTTTCACTTGCATCTTGTTACTCTT 59.456 34.615 0.00 0.00 0.00 2.85
88 89 5.929697 TCACTTGCATCTTGTTACTCTTG 57.070 39.130 0.00 0.00 0.00 3.02
89 90 4.756642 TCACTTGCATCTTGTTACTCTTGG 59.243 41.667 0.00 0.00 0.00 3.61
90 91 4.074970 ACTTGCATCTTGTTACTCTTGGG 58.925 43.478 0.00 0.00 0.00 4.12
91 92 3.788227 TGCATCTTGTTACTCTTGGGT 57.212 42.857 0.00 0.00 0.00 4.51
92 93 4.098914 TGCATCTTGTTACTCTTGGGTT 57.901 40.909 0.00 0.00 0.00 4.11
93 94 4.469657 TGCATCTTGTTACTCTTGGGTTT 58.530 39.130 0.00 0.00 0.00 3.27
94 95 4.278170 TGCATCTTGTTACTCTTGGGTTTG 59.722 41.667 0.00 0.00 0.00 2.93
95 96 4.321230 GCATCTTGTTACTCTTGGGTTTGG 60.321 45.833 0.00 0.00 0.00 3.28
96 97 3.827722 TCTTGTTACTCTTGGGTTTGGG 58.172 45.455 0.00 0.00 0.00 4.12
97 98 3.203487 TCTTGTTACTCTTGGGTTTGGGT 59.797 43.478 0.00 0.00 0.00 4.51
98 99 2.938838 TGTTACTCTTGGGTTTGGGTG 58.061 47.619 0.00 0.00 0.00 4.61
99 100 2.242708 TGTTACTCTTGGGTTTGGGTGT 59.757 45.455 0.00 0.00 0.00 4.16
100 101 3.293337 GTTACTCTTGGGTTTGGGTGTT 58.707 45.455 0.00 0.00 0.00 3.32
101 102 2.543037 ACTCTTGGGTTTGGGTGTTT 57.457 45.000 0.00 0.00 0.00 2.83
102 103 2.107366 ACTCTTGGGTTTGGGTGTTTG 58.893 47.619 0.00 0.00 0.00 2.93
103 104 2.291930 ACTCTTGGGTTTGGGTGTTTGA 60.292 45.455 0.00 0.00 0.00 2.69
104 105 2.362077 CTCTTGGGTTTGGGTGTTTGAG 59.638 50.000 0.00 0.00 0.00 3.02
105 106 0.827368 TTGGGTTTGGGTGTTTGAGC 59.173 50.000 0.00 0.00 0.00 4.26
106 107 0.324738 TGGGTTTGGGTGTTTGAGCA 60.325 50.000 0.00 0.00 0.00 4.26
107 108 0.104120 GGGTTTGGGTGTTTGAGCAC 59.896 55.000 0.00 0.00 38.56 4.40
113 114 4.898607 GTGTTTGAGCACCCTGGA 57.101 55.556 0.00 0.00 33.53 3.86
114 115 3.109847 GTGTTTGAGCACCCTGGAA 57.890 52.632 0.00 0.00 33.53 3.53
115 116 0.954452 GTGTTTGAGCACCCTGGAAG 59.046 55.000 0.00 0.00 33.53 3.46
137 138 3.557228 AAGAGATCATCTTGGAGCCAC 57.443 47.619 0.00 0.00 46.80 5.01
138 139 2.475155 AGAGATCATCTTGGAGCCACA 58.525 47.619 0.00 0.00 32.99 4.17
139 140 3.047115 AGAGATCATCTTGGAGCCACAT 58.953 45.455 0.00 0.00 32.99 3.21
140 141 3.458857 AGAGATCATCTTGGAGCCACATT 59.541 43.478 0.00 0.00 32.99 2.71
141 142 4.079901 AGAGATCATCTTGGAGCCACATTT 60.080 41.667 0.00 0.00 32.99 2.32
142 143 4.205587 AGATCATCTTGGAGCCACATTTC 58.794 43.478 0.00 0.00 0.00 2.17
143 144 3.438216 TCATCTTGGAGCCACATTTCA 57.562 42.857 0.00 0.00 0.00 2.69
144 145 3.972133 TCATCTTGGAGCCACATTTCAT 58.028 40.909 0.00 0.00 0.00 2.57
145 146 4.346730 TCATCTTGGAGCCACATTTCATT 58.653 39.130 0.00 0.00 0.00 2.57
146 147 4.158949 TCATCTTGGAGCCACATTTCATTG 59.841 41.667 0.00 0.00 0.00 2.82
147 148 3.499338 TCTTGGAGCCACATTTCATTGT 58.501 40.909 0.00 0.00 0.00 2.71
148 149 3.256383 TCTTGGAGCCACATTTCATTGTG 59.744 43.478 0.00 0.00 45.28 3.33
156 157 4.247267 CACATTTCATTGTGGTGAAGCT 57.753 40.909 0.00 0.00 42.63 3.74
157 158 4.624015 CACATTTCATTGTGGTGAAGCTT 58.376 39.130 0.00 0.00 42.63 3.74
158 159 4.682860 CACATTTCATTGTGGTGAAGCTTC 59.317 41.667 19.89 19.89 42.63 3.86
159 160 3.624326 TTTCATTGTGGTGAAGCTTCG 57.376 42.857 21.11 4.79 39.13 3.79
160 161 2.254546 TCATTGTGGTGAAGCTTCGT 57.745 45.000 21.11 0.00 0.00 3.85
161 162 1.872952 TCATTGTGGTGAAGCTTCGTG 59.127 47.619 21.11 10.69 0.00 4.35
162 163 1.069022 CATTGTGGTGAAGCTTCGTGG 60.069 52.381 21.11 1.74 0.00 4.94
163 164 0.107410 TTGTGGTGAAGCTTCGTGGT 60.107 50.000 21.11 0.00 0.00 4.16
164 165 0.813610 TGTGGTGAAGCTTCGTGGTG 60.814 55.000 21.11 0.00 0.00 4.17
165 166 1.227823 TGGTGAAGCTTCGTGGTGG 60.228 57.895 21.11 0.00 0.00 4.61
166 167 1.227853 GGTGAAGCTTCGTGGTGGT 60.228 57.895 21.11 0.00 0.00 4.16
167 168 1.507141 GGTGAAGCTTCGTGGTGGTG 61.507 60.000 21.11 0.00 0.00 4.17
168 169 0.814010 GTGAAGCTTCGTGGTGGTGT 60.814 55.000 21.11 0.00 0.00 4.16
169 170 0.107410 TGAAGCTTCGTGGTGGTGTT 60.107 50.000 21.11 0.00 0.00 3.32
170 171 0.307760 GAAGCTTCGTGGTGGTGTTG 59.692 55.000 11.40 0.00 0.00 3.33
171 172 1.101049 AAGCTTCGTGGTGGTGTTGG 61.101 55.000 0.00 0.00 0.00 3.77
172 173 1.525077 GCTTCGTGGTGGTGTTGGA 60.525 57.895 0.00 0.00 0.00 3.53
173 174 1.098712 GCTTCGTGGTGGTGTTGGAA 61.099 55.000 0.00 0.00 0.00 3.53
174 175 1.604604 CTTCGTGGTGGTGTTGGAAT 58.395 50.000 0.00 0.00 0.00 3.01
175 176 1.535462 CTTCGTGGTGGTGTTGGAATC 59.465 52.381 0.00 0.00 0.00 2.52
176 177 0.250553 TCGTGGTGGTGTTGGAATCC 60.251 55.000 0.00 0.00 0.00 3.01
177 178 0.250727 CGTGGTGGTGTTGGAATCCT 60.251 55.000 0.00 0.00 0.00 3.24
178 179 1.817740 CGTGGTGGTGTTGGAATCCTT 60.818 52.381 0.00 0.00 0.00 3.36
179 180 1.886542 GTGGTGGTGTTGGAATCCTTC 59.113 52.381 0.00 0.00 0.00 3.46
180 181 1.496857 TGGTGGTGTTGGAATCCTTCA 59.503 47.619 0.00 0.00 0.00 3.02
181 182 2.091610 TGGTGGTGTTGGAATCCTTCAA 60.092 45.455 0.00 0.00 0.00 2.69
182 183 3.165071 GGTGGTGTTGGAATCCTTCAAT 58.835 45.455 0.00 0.00 0.00 2.57
183 184 3.578282 GGTGGTGTTGGAATCCTTCAATT 59.422 43.478 0.00 0.00 0.00 2.32
184 185 4.770010 GGTGGTGTTGGAATCCTTCAATTA 59.230 41.667 0.00 0.00 0.00 1.40
185 186 5.245075 GGTGGTGTTGGAATCCTTCAATTAA 59.755 40.000 0.00 0.00 0.00 1.40
186 187 6.156519 GTGGTGTTGGAATCCTTCAATTAAC 58.843 40.000 0.00 0.00 0.00 2.01
187 188 6.015434 GTGGTGTTGGAATCCTTCAATTAACT 60.015 38.462 0.00 0.00 0.00 2.24
188 189 6.553100 TGGTGTTGGAATCCTTCAATTAACTT 59.447 34.615 0.00 0.00 0.00 2.66
189 190 7.070571 TGGTGTTGGAATCCTTCAATTAACTTT 59.929 33.333 0.00 0.00 0.00 2.66
190 191 7.931407 GGTGTTGGAATCCTTCAATTAACTTTT 59.069 33.333 0.00 0.00 0.00 2.27
191 192 8.764287 GTGTTGGAATCCTTCAATTAACTTTTG 58.236 33.333 0.00 0.00 0.00 2.44
192 193 7.930865 TGTTGGAATCCTTCAATTAACTTTTGG 59.069 33.333 0.00 0.00 0.00 3.28
193 194 7.847711 TGGAATCCTTCAATTAACTTTTGGA 57.152 32.000 0.00 0.00 0.00 3.53
194 195 7.895759 TGGAATCCTTCAATTAACTTTTGGAG 58.104 34.615 0.00 0.00 30.72 3.86
195 196 7.728083 TGGAATCCTTCAATTAACTTTTGGAGA 59.272 33.333 0.00 0.00 32.33 3.71
196 197 8.246871 GGAATCCTTCAATTAACTTTTGGAGAG 58.753 37.037 0.00 0.00 32.33 3.20
197 198 8.940397 AATCCTTCAATTAACTTTTGGAGAGA 57.060 30.769 0.00 0.00 32.33 3.10
198 199 7.986085 TCCTTCAATTAACTTTTGGAGAGAG 57.014 36.000 0.00 0.00 32.33 3.20
199 200 7.745717 TCCTTCAATTAACTTTTGGAGAGAGA 58.254 34.615 0.00 0.00 32.33 3.10
200 201 7.880195 TCCTTCAATTAACTTTTGGAGAGAGAG 59.120 37.037 0.00 0.00 32.33 3.20
201 202 7.663493 CCTTCAATTAACTTTTGGAGAGAGAGT 59.337 37.037 0.00 0.00 32.33 3.24
202 203 8.608844 TTCAATTAACTTTTGGAGAGAGAGTC 57.391 34.615 0.00 0.00 0.00 3.36
203 204 7.735917 TCAATTAACTTTTGGAGAGAGAGTCA 58.264 34.615 0.00 0.00 0.00 3.41
204 205 8.210946 TCAATTAACTTTTGGAGAGAGAGTCAA 58.789 33.333 0.00 0.00 0.00 3.18
205 206 7.971183 ATTAACTTTTGGAGAGAGAGTCAAC 57.029 36.000 0.00 0.00 0.00 3.18
206 207 4.344359 ACTTTTGGAGAGAGAGTCAACC 57.656 45.455 0.00 0.00 0.00 3.77
207 208 3.970640 ACTTTTGGAGAGAGAGTCAACCT 59.029 43.478 0.00 0.00 0.00 3.50
208 209 4.410555 ACTTTTGGAGAGAGAGTCAACCTT 59.589 41.667 0.00 0.00 0.00 3.50
209 210 4.342862 TTTGGAGAGAGAGTCAACCTTG 57.657 45.455 0.00 0.00 0.00 3.61
210 211 2.964209 TGGAGAGAGAGTCAACCTTGT 58.036 47.619 0.00 0.00 0.00 3.16
211 212 3.309296 TGGAGAGAGAGTCAACCTTGTT 58.691 45.455 0.00 0.00 0.00 2.83
212 213 3.322254 TGGAGAGAGAGTCAACCTTGTTC 59.678 47.826 0.00 0.00 0.00 3.18
213 214 3.570559 GAGAGAGAGTCAACCTTGTTCG 58.429 50.000 0.00 0.00 0.00 3.95
214 215 2.959707 AGAGAGAGTCAACCTTGTTCGT 59.040 45.455 0.00 0.00 0.00 3.85
215 216 4.142790 AGAGAGAGTCAACCTTGTTCGTA 58.857 43.478 0.00 0.00 0.00 3.43
216 217 4.583489 AGAGAGAGTCAACCTTGTTCGTAA 59.417 41.667 0.00 0.00 0.00 3.18
217 218 5.068723 AGAGAGAGTCAACCTTGTTCGTAAA 59.931 40.000 0.00 0.00 0.00 2.01
218 219 5.290386 AGAGAGTCAACCTTGTTCGTAAAG 58.710 41.667 0.00 0.00 0.00 1.85
225 226 1.802365 CCTTGTTCGTAAAGGTTCCGG 59.198 52.381 0.00 0.00 39.55 5.14
226 227 2.486918 CTTGTTCGTAAAGGTTCCGGT 58.513 47.619 0.00 0.00 0.00 5.28
227 228 2.618442 TGTTCGTAAAGGTTCCGGTT 57.382 45.000 0.00 0.00 0.00 4.44
228 229 2.211806 TGTTCGTAAAGGTTCCGGTTG 58.788 47.619 0.00 0.00 0.00 3.77
229 230 1.532437 GTTCGTAAAGGTTCCGGTTGG 59.468 52.381 0.00 0.00 0.00 3.77
230 231 0.603439 TCGTAAAGGTTCCGGTTGGC 60.603 55.000 0.00 0.00 34.14 4.52
231 232 0.885596 CGTAAAGGTTCCGGTTGGCA 60.886 55.000 0.00 0.00 34.14 4.92
232 233 0.594602 GTAAAGGTTCCGGTTGGCAC 59.405 55.000 0.00 0.00 34.14 5.01
235 236 2.203437 GGTTCCGGTTGGCACCTT 60.203 61.111 0.00 0.00 46.92 3.50
236 237 2.265904 GGTTCCGGTTGGCACCTTC 61.266 63.158 0.00 0.00 46.92 3.46
237 238 1.527380 GTTCCGGTTGGCACCTTCA 60.527 57.895 0.00 0.00 41.64 3.02
238 239 1.104577 GTTCCGGTTGGCACCTTCAA 61.105 55.000 0.00 0.00 41.64 2.69
239 240 0.821711 TTCCGGTTGGCACCTTCAAG 60.822 55.000 0.00 0.00 41.64 3.02
240 241 2.268076 CCGGTTGGCACCTTCAAGG 61.268 63.158 0.22 0.22 41.64 3.61
241 242 2.268076 CGGTTGGCACCTTCAAGGG 61.268 63.158 8.75 0.00 41.64 3.95
242 243 2.574018 GGTTGGCACCTTCAAGGGC 61.574 63.158 8.75 8.36 40.58 5.19
243 244 1.832167 GTTGGCACCTTCAAGGGCA 60.832 57.895 8.75 0.00 40.58 5.36
244 245 1.832167 TTGGCACCTTCAAGGGCAC 60.832 57.895 8.75 3.86 40.58 5.01
263 264 2.962253 GCTAGTGGATGCGCGACC 60.962 66.667 12.10 14.40 0.00 4.79
264 265 2.279517 CTAGTGGATGCGCGACCC 60.280 66.667 12.10 7.70 0.00 4.46
265 266 3.792053 CTAGTGGATGCGCGACCCC 62.792 68.421 12.10 7.28 0.00 4.95
267 268 4.778143 GTGGATGCGCGACCCCTT 62.778 66.667 12.10 0.00 0.00 3.95
268 269 4.776322 TGGATGCGCGACCCCTTG 62.776 66.667 12.10 0.00 0.00 3.61
271 272 4.802051 ATGCGCGACCCCTTGCAT 62.802 61.111 12.10 0.00 42.84 3.96
275 276 3.499737 GCGACCCCTTGCATCGTG 61.500 66.667 8.31 0.00 38.13 4.35
276 277 3.499737 CGACCCCTTGCATCGTGC 61.500 66.667 0.00 3.44 45.29 5.34
285 286 2.471607 GCATCGTGCGAGTGTGTG 59.528 61.111 0.00 0.00 31.71 3.82
286 287 2.021584 GCATCGTGCGAGTGTGTGA 61.022 57.895 0.00 0.00 31.71 3.58
287 288 1.354337 GCATCGTGCGAGTGTGTGAT 61.354 55.000 0.00 0.00 31.71 3.06
288 289 1.070821 CATCGTGCGAGTGTGTGATT 58.929 50.000 0.00 0.00 0.00 2.57
289 290 1.070821 ATCGTGCGAGTGTGTGATTG 58.929 50.000 0.00 0.00 0.00 2.67
290 291 0.249280 TCGTGCGAGTGTGTGATTGT 60.249 50.000 0.00 0.00 0.00 2.71
291 292 0.111134 CGTGCGAGTGTGTGATTGTG 60.111 55.000 0.00 0.00 0.00 3.33
292 293 0.384725 GTGCGAGTGTGTGATTGTGC 60.385 55.000 0.00 0.00 0.00 4.57
293 294 1.207593 GCGAGTGTGTGATTGTGCC 59.792 57.895 0.00 0.00 0.00 5.01
294 295 1.230635 GCGAGTGTGTGATTGTGCCT 61.231 55.000 0.00 0.00 0.00 4.75
295 296 0.792640 CGAGTGTGTGATTGTGCCTC 59.207 55.000 0.00 0.00 0.00 4.70
296 297 1.160137 GAGTGTGTGATTGTGCCTCC 58.840 55.000 0.00 0.00 0.00 4.30
297 298 0.473755 AGTGTGTGATTGTGCCTCCA 59.526 50.000 0.00 0.00 0.00 3.86
298 299 0.593128 GTGTGTGATTGTGCCTCCAC 59.407 55.000 0.00 0.00 42.40 4.02
305 306 3.471620 TGTGCCTCCACACCTCTC 58.528 61.111 0.00 0.00 46.51 3.20
306 307 2.217038 TGTGCCTCCACACCTCTCC 61.217 63.158 0.00 0.00 46.51 3.71
307 308 2.204034 TGCCTCCACACCTCTCCA 59.796 61.111 0.00 0.00 0.00 3.86
308 309 1.461268 TGCCTCCACACCTCTCCAA 60.461 57.895 0.00 0.00 0.00 3.53
309 310 0.842030 TGCCTCCACACCTCTCCAAT 60.842 55.000 0.00 0.00 0.00 3.16
327 328 2.361771 GGAGACGTACCTCCCCCA 59.638 66.667 11.40 0.00 45.44 4.96
328 329 1.305549 GGAGACGTACCTCCCCCAA 60.306 63.158 11.40 0.00 45.44 4.12
332 333 0.906282 GACGTACCTCCCCCAAAGGA 60.906 60.000 0.00 0.00 38.24 3.36
334 335 0.252197 CGTACCTCCCCCAAAGGAAG 59.748 60.000 0.00 0.00 38.24 3.46
335 336 0.624254 GTACCTCCCCCAAAGGAAGG 59.376 60.000 0.00 0.00 40.19 3.46
336 337 0.551624 TACCTCCCCCAAAGGAAGGG 60.552 60.000 0.00 0.00 46.36 3.95
365 366 1.852633 ACACATCCTCGTCTCCATCA 58.147 50.000 0.00 0.00 0.00 3.07
369 370 2.834549 ACATCCTCGTCTCCATCAACTT 59.165 45.455 0.00 0.00 0.00 2.66
370 371 3.118956 ACATCCTCGTCTCCATCAACTTC 60.119 47.826 0.00 0.00 0.00 3.01
375 376 4.082190 CCTCGTCTCCATCAACTTCACTTA 60.082 45.833 0.00 0.00 0.00 2.24
376 377 5.394663 CCTCGTCTCCATCAACTTCACTTAT 60.395 44.000 0.00 0.00 0.00 1.73
385 386 7.606456 TCCATCAACTTCACTTATGGTTACTTC 59.394 37.037 0.00 0.00 38.58 3.01
393 394 6.996509 TCACTTATGGTTACTTCGTACCTTT 58.003 36.000 0.00 0.00 0.00 3.11
406 407 3.042887 CGTACCTTTTCTTTGTGCAAGC 58.957 45.455 0.00 0.00 31.70 4.01
445 446 2.187707 CTTGTGCTTGCACTTGTTGTC 58.812 47.619 23.53 0.00 0.00 3.18
488 490 6.770785 GGTTGTCCACCTAATTGCATATCTAA 59.229 38.462 0.00 0.00 43.29 2.10
489 491 7.284489 GGTTGTCCACCTAATTGCATATCTAAA 59.716 37.037 0.00 0.00 43.29 1.85
490 492 7.801716 TGTCCACCTAATTGCATATCTAAAC 57.198 36.000 0.00 0.00 0.00 2.01
524 526 9.900264 CTTTGTTGTAAAGACTAAAATTTGTGC 57.100 29.630 0.00 0.00 0.00 4.57
546 548 7.067615 TGTGCAGAGGTTAAAAATTGTTAGTCA 59.932 33.333 0.00 0.00 0.00 3.41
549 551 7.368059 CAGAGGTTAAAAATTGTTAGTCACCC 58.632 38.462 4.68 0.00 0.00 4.61
552 554 7.892609 AGGTTAAAAATTGTTAGTCACCCATC 58.107 34.615 4.68 0.00 0.00 3.51
557 559 2.038863 TGTTAGTCACCCATCCACCT 57.961 50.000 0.00 0.00 0.00 4.00
558 560 2.344592 TGTTAGTCACCCATCCACCTT 58.655 47.619 0.00 0.00 0.00 3.50
565 568 0.178831 ACCCATCCACCTTCCCTCTT 60.179 55.000 0.00 0.00 0.00 2.85
576 579 3.852578 ACCTTCCCTCTTGTTGACCATAT 59.147 43.478 0.00 0.00 0.00 1.78
594 597 8.090831 TGACCATATCGATCCTTTCAGAATTAG 58.909 37.037 0.00 0.00 0.00 1.73
597 600 8.090831 CCATATCGATCCTTTCAGAATTAGTGA 58.909 37.037 0.00 0.00 0.00 3.41
600 603 5.805486 TCGATCCTTTCAGAATTAGTGAACG 59.195 40.000 2.82 2.07 33.63 3.95
671 674 8.679288 AATCTATGAGCATTTTTCAAAACTCG 57.321 30.769 0.00 0.00 0.00 4.18
678 681 5.691754 AGCATTTTTCAAAACTCGGAACATC 59.308 36.000 0.00 0.00 0.00 3.06
683 686 4.203950 TCAAAACTCGGAACATCGTTTG 57.796 40.909 0.00 0.00 30.74 2.93
686 689 4.886247 AAACTCGGAACATCGTTTGAAA 57.114 36.364 0.00 0.00 0.00 2.69
757 760 0.741927 TGCACTCCATCATCGCACAG 60.742 55.000 0.00 0.00 0.00 3.66
759 762 1.568606 CACTCCATCATCGCACAGAG 58.431 55.000 0.00 0.00 0.00 3.35
760 763 0.463204 ACTCCATCATCGCACAGAGG 59.537 55.000 0.00 0.00 0.00 3.69
772 775 2.427753 CAGAGGGGCGAATAGGGC 59.572 66.667 0.00 0.00 0.00 5.19
790 793 2.589540 CTTCCATAGCACCGGCCA 59.410 61.111 0.00 0.00 42.56 5.36
794 797 0.107831 TCCATAGCACCGGCCATAAC 59.892 55.000 0.00 0.00 42.56 1.89
796 799 1.229428 CATAGCACCGGCCATAACTG 58.771 55.000 0.00 0.00 42.56 3.16
804 807 1.067974 CCGGCCATAACTGACGTATGA 59.932 52.381 2.24 0.00 0.00 2.15
805 808 2.482316 CCGGCCATAACTGACGTATGAA 60.482 50.000 2.24 0.00 0.00 2.57
806 809 3.191669 CGGCCATAACTGACGTATGAAA 58.808 45.455 2.24 0.00 0.00 2.69
809 812 5.569413 GGCCATAACTGACGTATGAAAAAG 58.431 41.667 0.00 0.00 0.00 2.27
813 816 7.968405 GCCATAACTGACGTATGAAAAAGAAAT 59.032 33.333 0.00 0.00 0.00 2.17
821 824 9.743057 TGACGTATGAAAAAGAAATTCAAACAT 57.257 25.926 0.00 0.00 39.98 2.71
834 837 7.881232 AGAAATTCAAACATGCATTGATCCTTT 59.119 29.630 13.48 12.82 36.72 3.11
835 838 7.605410 AATTCAAACATGCATTGATCCTTTC 57.395 32.000 13.48 0.00 36.72 2.62
836 839 4.735985 TCAAACATGCATTGATCCTTTCG 58.264 39.130 9.75 0.00 32.10 3.46
843 1290 4.015764 TGCATTGATCCTTTCGATCCAAA 58.984 39.130 0.00 0.00 46.06 3.28
844 1291 4.646040 TGCATTGATCCTTTCGATCCAAAT 59.354 37.500 0.00 0.00 46.06 2.32
880 1970 4.335594 GTGAACCCTCCGATCCAAAATAAG 59.664 45.833 0.00 0.00 0.00 1.73
893 1983 7.537306 CGATCCAAAATAAGTGTGTGGTTTTAG 59.463 37.037 0.00 0.00 0.00 1.85
896 1986 8.532819 TCCAAAATAAGTGTGTGGTTTTAGTTT 58.467 29.630 0.00 0.00 0.00 2.66
939 2029 2.019984 GCAGATTCAGCCCAACTAAGG 58.980 52.381 0.00 0.00 0.00 2.69
983 2073 2.039418 ACCAACCAAAAAGGAGAAGGC 58.961 47.619 0.00 0.00 41.22 4.35
984 2074 2.038659 CCAACCAAAAAGGAGAAGGCA 58.961 47.619 0.00 0.00 41.22 4.75
985 2075 2.433970 CCAACCAAAAAGGAGAAGGCAA 59.566 45.455 0.00 0.00 41.22 4.52
1162 2252 2.842462 TCCATATCCGGTGCCGCT 60.842 61.111 0.00 0.00 38.24 5.52
1275 2365 0.320771 AAGTTCAAGCTCGCCGTCAT 60.321 50.000 0.00 0.00 0.00 3.06
1355 2445 1.068121 CTCCAGGTTCACTTTCCCCT 58.932 55.000 0.00 0.00 0.00 4.79
1551 2641 1.339727 GCCCTACCGGTCTTCAATGTT 60.340 52.381 12.40 0.00 0.00 2.71
1560 2650 0.541764 TCTTCAATGTTGGGGTGGCC 60.542 55.000 0.00 0.00 0.00 5.36
1563 2653 0.105246 TCAATGTTGGGGTGGCCTTT 60.105 50.000 3.32 0.00 0.00 3.11
1566 2656 0.831711 ATGTTGGGGTGGCCTTTGTC 60.832 55.000 3.32 0.00 0.00 3.18
1567 2657 1.456705 GTTGGGGTGGCCTTTGTCA 60.457 57.895 3.32 0.00 0.00 3.58
1587 2677 2.309528 ACGAGAGTGCTTTGTTGTCA 57.690 45.000 0.00 0.00 46.97 3.58
1650 2740 6.671614 AAGTCAATTGTGTCGAGTTTGTTA 57.328 33.333 5.13 0.00 0.00 2.41
1672 2762 1.334869 CGGGAGATAAAGCAATGCACC 59.665 52.381 8.35 0.00 0.00 5.01
1713 2803 4.938226 GTGTTCTCCTCGGAATCAAAAGAT 59.062 41.667 0.00 0.00 0.00 2.40
1716 2806 3.118261 TCTCCTCGGAATCAAAAGATGGG 60.118 47.826 0.00 0.00 0.00 4.00
1720 2810 4.016444 CTCGGAATCAAAAGATGGGGAAA 58.984 43.478 0.00 0.00 0.00 3.13
1750 2840 1.952296 GGGAGCTAGTTGGCATGATTG 59.048 52.381 0.00 0.00 34.17 2.67
1882 2973 7.910162 GTCATTTAATCTACATGATGTTGCGTT 59.090 33.333 2.29 3.40 35.21 4.84
1964 3055 1.544246 GCACTGGAAAATGGGTACACC 59.456 52.381 0.00 0.00 40.81 4.16
2042 3133 7.360438 GCAACAGTAAAGGTATATAGCAGATGC 60.360 40.741 14.11 0.00 42.49 3.91
2044 3135 6.498651 ACAGTAAAGGTATATAGCAGATGCCT 59.501 38.462 14.11 0.00 40.74 4.75
2050 3141 3.710209 ATATAGCAGATGCCTGTTCCC 57.290 47.619 0.14 0.00 42.35 3.97
2224 3315 1.915078 GCCTGGCCCAAGAGCTTAGA 61.915 60.000 7.66 0.00 0.00 2.10
2277 3368 7.018635 AGCATTCACATTTTTCTTTTGTTGG 57.981 32.000 0.00 0.00 0.00 3.77
2294 3385 6.620877 TTGTTGGATTGTACTCCTGATACT 57.379 37.500 3.08 0.00 36.20 2.12
2317 3408 8.040716 ACTGTTTATTCTAACTGGTTATGTGC 57.959 34.615 0.00 0.00 32.99 4.57
2512 3603 4.472691 TCTTGTTCAGTGATTGCTTTCG 57.527 40.909 0.00 0.00 0.00 3.46
2709 3800 2.162681 CCCAAGTTCCAGGATGTTGAC 58.837 52.381 11.45 0.00 0.00 3.18
2711 3802 3.221771 CCAAGTTCCAGGATGTTGACAA 58.778 45.455 11.45 0.00 0.00 3.18
2734 3825 2.739885 TGAGTCTGCTTTCTCTGAGC 57.260 50.000 0.00 0.00 40.53 4.26
2787 3878 6.429078 TCAGTGAATCAGAACTCCAGAATTTG 59.571 38.462 0.00 0.00 0.00 2.32
2826 3917 9.212641 CACAAGTCTCAGAAGAAAATTGATCTA 57.787 33.333 0.00 0.00 31.93 1.98
2871 3962 4.472833 AGCTGTCATTTCCAGATTCTACCT 59.527 41.667 0.00 0.00 31.38 3.08
2995 4086 5.128919 GCTGATGTCTTTATCCCAATGAGT 58.871 41.667 0.00 0.00 0.00 3.41
3028 4119 8.593492 TTGTCTTTATAGCTATAGTGCATGTG 57.407 34.615 13.07 0.96 34.99 3.21
3029 4120 6.646653 TGTCTTTATAGCTATAGTGCATGTGC 59.353 38.462 13.07 0.00 42.50 4.57
3156 4247 3.763360 CAGTTACTCCATTGATTTGGCCA 59.237 43.478 0.00 0.00 36.66 5.36
3175 4266 7.716799 TGGCCATGTATTATTTTCTTGTTCT 57.283 32.000 0.00 0.00 0.00 3.01
3558 4649 8.557864 CAGACTTCTGCCATATTCTTAGAATTG 58.442 37.037 13.00 10.47 37.15 2.32
3562 4653 3.820467 TGCCATATTCTTAGAATTGCCCG 59.180 43.478 13.00 0.00 0.00 6.13
3572 4665 8.856153 TTCTTAGAATTGCCCGCATTATATTA 57.144 30.769 0.00 0.00 0.00 0.98
3606 4699 3.853207 TCTGGTGTACCTGTAAGTCCTT 58.147 45.455 2.32 0.00 36.48 3.36
3625 4718 7.514721 AGTCCTTCCTCAAGTTAAAACATGTA 58.485 34.615 0.00 0.00 0.00 2.29
3626 4719 7.661847 AGTCCTTCCTCAAGTTAAAACATGTAG 59.338 37.037 0.00 0.00 0.00 2.74
3678 4782 4.454678 AGTTTTGCACTGATCTCAGACAA 58.545 39.130 13.94 13.32 46.59 3.18
3679 4783 5.068636 AGTTTTGCACTGATCTCAGACAAT 58.931 37.500 13.94 1.70 46.59 2.71
3777 4881 7.880160 ACTATTTGCCTGCAAGATTGTAATA 57.120 32.000 4.58 0.00 37.24 0.98
3888 5060 9.784680 CTTATGCATTCTGATATTGGCTTAATC 57.215 33.333 3.54 0.00 0.00 1.75
3898 5070 9.403110 CTGATATTGGCTTAATCATTTTGTAGC 57.597 33.333 0.00 0.00 0.00 3.58
3916 5088 8.810652 TTTGTAGCAAAATTGAAGGAATACAC 57.189 30.769 0.00 0.00 0.00 2.90
3964 5136 5.237127 CGAACATGCATACACATCACCTATT 59.763 40.000 0.00 0.00 0.00 1.73
4098 5270 5.824904 ATCATGTTACTCCTGCACATTTC 57.175 39.130 0.00 0.00 0.00 2.17
4200 5372 6.852420 ACTGACCAGTATACACACTACAAT 57.148 37.500 5.50 0.00 40.43 2.71
4291 5465 2.124293 CATCCCATGCTTGCATGCT 58.876 52.632 25.12 12.15 0.00 3.79
4452 5626 1.843851 CCTGCCTGGTAATCCTAACCA 59.156 52.381 0.00 0.00 44.75 3.67
4622 5796 9.248291 TCTTGCTGTCTAATTTTCAAAATGTTC 57.752 29.630 0.00 0.00 0.00 3.18
4629 5803 9.341899 GTCTAATTTTCAAAATGTTCGCAGTAT 57.658 29.630 0.00 0.00 0.00 2.12
4693 5867 4.004982 GCAAAGGACCGGAAGTTATGTTA 58.995 43.478 9.46 0.00 0.00 2.41
4694 5868 4.142752 GCAAAGGACCGGAAGTTATGTTAC 60.143 45.833 9.46 0.00 0.00 2.50
4695 5869 5.243207 CAAAGGACCGGAAGTTATGTTACT 58.757 41.667 9.46 0.00 0.00 2.24
4790 5967 1.964223 TCCAGTGAAGTGTGAGAGGAC 59.036 52.381 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.458487 GGGTCTTCTCCCTTAATGCCTAA 59.542 47.826 0.00 0.00 43.85 2.69
2 3 1.847088 GGGTCTTCTCCCTTAATGCCT 59.153 52.381 0.00 0.00 43.85 4.75
12 13 5.479027 GGAAGTATAGATCTGGGTCTTCTCC 59.521 48.000 20.24 10.28 33.00 3.71
13 14 6.015772 GTGGAAGTATAGATCTGGGTCTTCTC 60.016 46.154 20.24 14.84 33.00 2.87
14 15 5.836358 GTGGAAGTATAGATCTGGGTCTTCT 59.164 44.000 20.24 5.00 33.00 2.85
15 16 5.011227 GGTGGAAGTATAGATCTGGGTCTTC 59.989 48.000 5.18 12.81 0.00 2.87
16 17 4.902448 GGTGGAAGTATAGATCTGGGTCTT 59.098 45.833 5.18 4.88 0.00 3.01
17 18 4.078571 TGGTGGAAGTATAGATCTGGGTCT 60.079 45.833 5.18 0.00 0.00 3.85
18 19 4.223953 TGGTGGAAGTATAGATCTGGGTC 58.776 47.826 5.18 0.00 0.00 4.46
19 20 4.280789 TGGTGGAAGTATAGATCTGGGT 57.719 45.455 5.18 0.00 0.00 4.51
20 21 5.455326 CCTTTGGTGGAAGTATAGATCTGGG 60.455 48.000 5.18 0.00 0.00 4.45
21 22 5.366768 TCCTTTGGTGGAAGTATAGATCTGG 59.633 44.000 5.18 0.00 32.39 3.86
22 23 6.485830 TCCTTTGGTGGAAGTATAGATCTG 57.514 41.667 5.18 0.00 32.39 2.90
33 34 4.343814 GGAATCAAACTTCCTTTGGTGGAA 59.656 41.667 0.00 0.00 43.16 3.53
34 35 3.895041 GGAATCAAACTTCCTTTGGTGGA 59.105 43.478 0.00 0.00 41.32 4.02
35 36 3.006859 GGGAATCAAACTTCCTTTGGTGG 59.993 47.826 3.11 0.00 43.59 4.61
36 37 3.006859 GGGGAATCAAACTTCCTTTGGTG 59.993 47.826 3.11 0.00 43.59 4.17
37 38 3.239449 GGGGAATCAAACTTCCTTTGGT 58.761 45.455 3.11 0.00 43.59 3.67
38 39 2.567169 GGGGGAATCAAACTTCCTTTGG 59.433 50.000 3.11 0.00 43.59 3.28
39 40 3.238597 TGGGGGAATCAAACTTCCTTTG 58.761 45.455 3.11 0.00 43.59 2.77
40 41 3.628832 TGGGGGAATCAAACTTCCTTT 57.371 42.857 3.11 0.00 43.59 3.11
41 42 3.852858 ATGGGGGAATCAAACTTCCTT 57.147 42.857 3.11 0.00 43.59 3.36
42 43 3.858638 AGTATGGGGGAATCAAACTTCCT 59.141 43.478 3.11 0.00 43.59 3.36
43 44 4.251103 AGTATGGGGGAATCAAACTTCC 57.749 45.455 0.00 0.00 43.39 3.46
44 45 5.714806 TGAAAGTATGGGGGAATCAAACTTC 59.285 40.000 0.00 0.00 0.00 3.01
45 46 5.480422 GTGAAAGTATGGGGGAATCAAACTT 59.520 40.000 0.00 0.00 0.00 2.66
46 47 5.016831 GTGAAAGTATGGGGGAATCAAACT 58.983 41.667 0.00 0.00 0.00 2.66
47 48 5.016831 AGTGAAAGTATGGGGGAATCAAAC 58.983 41.667 0.00 0.00 0.00 2.93
48 49 5.269554 AGTGAAAGTATGGGGGAATCAAA 57.730 39.130 0.00 0.00 0.00 2.69
49 50 4.946160 AGTGAAAGTATGGGGGAATCAA 57.054 40.909 0.00 0.00 0.00 2.57
50 51 4.599041 CAAGTGAAAGTATGGGGGAATCA 58.401 43.478 0.00 0.00 0.00 2.57
51 52 3.381590 GCAAGTGAAAGTATGGGGGAATC 59.618 47.826 0.00 0.00 0.00 2.52
52 53 3.245586 TGCAAGTGAAAGTATGGGGGAAT 60.246 43.478 0.00 0.00 0.00 3.01
53 54 2.109128 TGCAAGTGAAAGTATGGGGGAA 59.891 45.455 0.00 0.00 0.00 3.97
54 55 1.707989 TGCAAGTGAAAGTATGGGGGA 59.292 47.619 0.00 0.00 0.00 4.81
55 56 2.214376 TGCAAGTGAAAGTATGGGGG 57.786 50.000 0.00 0.00 0.00 5.40
56 57 3.624777 AGATGCAAGTGAAAGTATGGGG 58.375 45.455 0.00 0.00 0.00 4.96
57 58 4.460382 ACAAGATGCAAGTGAAAGTATGGG 59.540 41.667 0.00 0.00 0.00 4.00
58 59 5.633830 ACAAGATGCAAGTGAAAGTATGG 57.366 39.130 0.00 0.00 0.00 2.74
59 60 7.810658 AGTAACAAGATGCAAGTGAAAGTATG 58.189 34.615 0.00 0.00 0.00 2.39
60 61 7.880195 AGAGTAACAAGATGCAAGTGAAAGTAT 59.120 33.333 0.00 0.00 0.00 2.12
61 62 7.217200 AGAGTAACAAGATGCAAGTGAAAGTA 58.783 34.615 0.00 0.00 0.00 2.24
62 63 6.058183 AGAGTAACAAGATGCAAGTGAAAGT 58.942 36.000 0.00 0.00 0.00 2.66
63 64 6.551385 AGAGTAACAAGATGCAAGTGAAAG 57.449 37.500 0.00 0.00 0.00 2.62
64 65 6.238731 CCAAGAGTAACAAGATGCAAGTGAAA 60.239 38.462 0.00 0.00 0.00 2.69
65 66 5.239306 CCAAGAGTAACAAGATGCAAGTGAA 59.761 40.000 0.00 0.00 0.00 3.18
66 67 4.756642 CCAAGAGTAACAAGATGCAAGTGA 59.243 41.667 0.00 0.00 0.00 3.41
67 68 4.083110 CCCAAGAGTAACAAGATGCAAGTG 60.083 45.833 0.00 0.00 0.00 3.16
68 69 4.074970 CCCAAGAGTAACAAGATGCAAGT 58.925 43.478 0.00 0.00 0.00 3.16
69 70 4.074970 ACCCAAGAGTAACAAGATGCAAG 58.925 43.478 0.00 0.00 0.00 4.01
70 71 4.098914 ACCCAAGAGTAACAAGATGCAA 57.901 40.909 0.00 0.00 0.00 4.08
71 72 3.788227 ACCCAAGAGTAACAAGATGCA 57.212 42.857 0.00 0.00 0.00 3.96
72 73 4.321230 CCAAACCCAAGAGTAACAAGATGC 60.321 45.833 0.00 0.00 0.00 3.91
73 74 4.218417 CCCAAACCCAAGAGTAACAAGATG 59.782 45.833 0.00 0.00 0.00 2.90
74 75 4.141018 ACCCAAACCCAAGAGTAACAAGAT 60.141 41.667 0.00 0.00 0.00 2.40
75 76 3.203487 ACCCAAACCCAAGAGTAACAAGA 59.797 43.478 0.00 0.00 0.00 3.02
76 77 3.317993 CACCCAAACCCAAGAGTAACAAG 59.682 47.826 0.00 0.00 0.00 3.16
77 78 3.292460 CACCCAAACCCAAGAGTAACAA 58.708 45.455 0.00 0.00 0.00 2.83
78 79 2.242708 ACACCCAAACCCAAGAGTAACA 59.757 45.455 0.00 0.00 0.00 2.41
79 80 2.940158 ACACCCAAACCCAAGAGTAAC 58.060 47.619 0.00 0.00 0.00 2.50
80 81 3.673543 AACACCCAAACCCAAGAGTAA 57.326 42.857 0.00 0.00 0.00 2.24
81 82 3.053544 TCAAACACCCAAACCCAAGAGTA 60.054 43.478 0.00 0.00 0.00 2.59
82 83 2.107366 CAAACACCCAAACCCAAGAGT 58.893 47.619 0.00 0.00 0.00 3.24
83 84 2.362077 CTCAAACACCCAAACCCAAGAG 59.638 50.000 0.00 0.00 0.00 2.85
84 85 2.383855 CTCAAACACCCAAACCCAAGA 58.616 47.619 0.00 0.00 0.00 3.02
85 86 1.202521 GCTCAAACACCCAAACCCAAG 60.203 52.381 0.00 0.00 0.00 3.61
86 87 0.827368 GCTCAAACACCCAAACCCAA 59.173 50.000 0.00 0.00 0.00 4.12
87 88 0.324738 TGCTCAAACACCCAAACCCA 60.325 50.000 0.00 0.00 0.00 4.51
88 89 0.104120 GTGCTCAAACACCCAAACCC 59.896 55.000 0.00 0.00 34.35 4.11
89 90 3.659850 GTGCTCAAACACCCAAACC 57.340 52.632 0.00 0.00 34.35 3.27
96 97 0.954452 CTTCCAGGGTGCTCAAACAC 59.046 55.000 0.00 0.00 39.94 3.32
97 98 0.178992 CCTTCCAGGGTGCTCAAACA 60.179 55.000 0.00 0.00 0.00 2.83
98 99 0.110486 TCCTTCCAGGGTGCTCAAAC 59.890 55.000 0.00 0.00 35.59 2.93
99 100 0.850100 TTCCTTCCAGGGTGCTCAAA 59.150 50.000 0.00 0.00 35.59 2.69
100 101 0.401738 CTTCCTTCCAGGGTGCTCAA 59.598 55.000 0.00 0.00 35.59 3.02
101 102 0.473694 TCTTCCTTCCAGGGTGCTCA 60.474 55.000 0.00 0.00 35.59 4.26
102 103 0.251634 CTCTTCCTTCCAGGGTGCTC 59.748 60.000 0.00 0.00 35.59 4.26
103 104 0.178891 TCTCTTCCTTCCAGGGTGCT 60.179 55.000 0.00 0.00 35.59 4.40
104 105 0.915364 ATCTCTTCCTTCCAGGGTGC 59.085 55.000 0.00 0.00 35.59 5.01
105 106 2.191400 TGATCTCTTCCTTCCAGGGTG 58.809 52.381 0.00 0.00 35.59 4.61
106 107 2.649742 TGATCTCTTCCTTCCAGGGT 57.350 50.000 0.00 0.00 35.59 4.34
107 108 3.316501 AGATGATCTCTTCCTTCCAGGG 58.683 50.000 0.00 0.00 35.59 4.45
108 109 4.444591 CCAAGATGATCTCTTCCTTCCAGG 60.445 50.000 0.00 0.00 42.48 4.45
109 110 4.408270 TCCAAGATGATCTCTTCCTTCCAG 59.592 45.833 0.00 0.00 42.48 3.86
110 111 4.365368 TCCAAGATGATCTCTTCCTTCCA 58.635 43.478 0.00 0.00 42.48 3.53
111 112 4.743348 GCTCCAAGATGATCTCTTCCTTCC 60.743 50.000 0.00 0.00 42.48 3.46
112 113 4.379652 GCTCCAAGATGATCTCTTCCTTC 58.620 47.826 0.00 0.00 42.48 3.46
113 114 3.136260 GGCTCCAAGATGATCTCTTCCTT 59.864 47.826 0.00 0.00 42.48 3.36
114 115 2.705127 GGCTCCAAGATGATCTCTTCCT 59.295 50.000 0.00 0.00 42.48 3.36
115 116 2.437281 TGGCTCCAAGATGATCTCTTCC 59.563 50.000 0.00 0.02 42.48 3.46
116 117 3.118482 TGTGGCTCCAAGATGATCTCTTC 60.118 47.826 0.00 0.00 42.48 2.87
117 118 2.842496 TGTGGCTCCAAGATGATCTCTT 59.158 45.455 0.00 0.00 45.34 2.85
118 119 2.475155 TGTGGCTCCAAGATGATCTCT 58.525 47.619 0.00 0.00 34.96 3.10
119 120 2.996249 TGTGGCTCCAAGATGATCTC 57.004 50.000 0.00 0.00 0.00 2.75
120 121 3.947612 AATGTGGCTCCAAGATGATCT 57.052 42.857 0.00 0.00 0.00 2.75
121 122 3.949754 TGAAATGTGGCTCCAAGATGATC 59.050 43.478 0.00 0.00 0.00 2.92
122 123 3.972133 TGAAATGTGGCTCCAAGATGAT 58.028 40.909 0.00 0.00 0.00 2.45
123 124 3.438216 TGAAATGTGGCTCCAAGATGA 57.562 42.857 0.00 0.00 0.00 2.92
124 125 4.081862 ACAATGAAATGTGGCTCCAAGATG 60.082 41.667 0.00 0.00 30.82 2.90
125 126 4.081862 CACAATGAAATGTGGCTCCAAGAT 60.082 41.667 0.00 0.00 45.47 2.40
126 127 3.256383 CACAATGAAATGTGGCTCCAAGA 59.744 43.478 0.00 0.00 45.47 3.02
127 128 3.581755 CACAATGAAATGTGGCTCCAAG 58.418 45.455 0.00 0.00 45.47 3.61
128 129 3.663995 CACAATGAAATGTGGCTCCAA 57.336 42.857 0.00 0.00 45.47 3.53
136 137 4.557296 CGAAGCTTCACCACAATGAAATGT 60.557 41.667 25.47 0.00 38.12 2.71
137 138 3.916172 CGAAGCTTCACCACAATGAAATG 59.084 43.478 25.47 0.79 38.12 2.32
138 139 3.569701 ACGAAGCTTCACCACAATGAAAT 59.430 39.130 25.47 0.00 38.12 2.17
139 140 2.948979 ACGAAGCTTCACCACAATGAAA 59.051 40.909 25.47 0.00 38.12 2.69
140 141 2.290367 CACGAAGCTTCACCACAATGAA 59.710 45.455 25.47 0.00 37.08 2.57
141 142 1.872952 CACGAAGCTTCACCACAATGA 59.127 47.619 25.47 0.00 0.00 2.57
142 143 1.069022 CCACGAAGCTTCACCACAATG 60.069 52.381 25.47 9.43 0.00 2.82
143 144 1.238439 CCACGAAGCTTCACCACAAT 58.762 50.000 25.47 0.00 0.00 2.71
144 145 0.107410 ACCACGAAGCTTCACCACAA 60.107 50.000 25.47 0.00 0.00 3.33
145 146 0.813610 CACCACGAAGCTTCACCACA 60.814 55.000 25.47 0.00 0.00 4.17
146 147 1.507141 CCACCACGAAGCTTCACCAC 61.507 60.000 25.47 0.00 0.00 4.16
147 148 1.227823 CCACCACGAAGCTTCACCA 60.228 57.895 25.47 0.00 0.00 4.17
148 149 1.227853 ACCACCACGAAGCTTCACC 60.228 57.895 25.47 0.05 0.00 4.02
149 150 0.814010 ACACCACCACGAAGCTTCAC 60.814 55.000 25.47 0.84 0.00 3.18
150 151 0.107410 AACACCACCACGAAGCTTCA 60.107 50.000 25.47 0.00 0.00 3.02
151 152 0.307760 CAACACCACCACGAAGCTTC 59.692 55.000 16.84 16.84 0.00 3.86
152 153 1.101049 CCAACACCACCACGAAGCTT 61.101 55.000 0.00 0.00 0.00 3.74
153 154 1.525995 CCAACACCACCACGAAGCT 60.526 57.895 0.00 0.00 0.00 3.74
154 155 1.098712 TTCCAACACCACCACGAAGC 61.099 55.000 0.00 0.00 0.00 3.86
155 156 1.535462 GATTCCAACACCACCACGAAG 59.465 52.381 0.00 0.00 0.00 3.79
156 157 1.600023 GATTCCAACACCACCACGAA 58.400 50.000 0.00 0.00 0.00 3.85
157 158 0.250553 GGATTCCAACACCACCACGA 60.251 55.000 0.00 0.00 0.00 4.35
158 159 0.250727 AGGATTCCAACACCACCACG 60.251 55.000 5.29 0.00 0.00 4.94
159 160 1.886542 GAAGGATTCCAACACCACCAC 59.113 52.381 5.29 0.00 39.83 4.16
160 161 1.496857 TGAAGGATTCCAACACCACCA 59.503 47.619 5.29 0.00 46.93 4.17
161 162 2.286365 TGAAGGATTCCAACACCACC 57.714 50.000 5.29 0.00 46.93 4.61
162 163 4.871933 AATTGAAGGATTCCAACACCAC 57.128 40.909 5.29 0.00 46.93 4.16
163 164 6.074648 AGTTAATTGAAGGATTCCAACACCA 58.925 36.000 5.29 0.00 46.93 4.17
164 165 6.590234 AGTTAATTGAAGGATTCCAACACC 57.410 37.500 5.29 0.00 46.93 4.16
165 166 8.764287 CAAAAGTTAATTGAAGGATTCCAACAC 58.236 33.333 5.29 0.00 46.93 3.32
166 167 7.930865 CCAAAAGTTAATTGAAGGATTCCAACA 59.069 33.333 5.29 1.68 46.93 3.33
167 168 8.147704 TCCAAAAGTTAATTGAAGGATTCCAAC 58.852 33.333 5.29 0.00 46.93 3.77
168 169 8.256356 TCCAAAAGTTAATTGAAGGATTCCAA 57.744 30.769 5.29 0.00 46.93 3.53
169 170 7.728083 TCTCCAAAAGTTAATTGAAGGATTCCA 59.272 33.333 5.29 0.00 46.93 3.53
170 171 8.122472 TCTCCAAAAGTTAATTGAAGGATTCC 57.878 34.615 0.00 0.00 46.93 3.01
172 173 8.940397 TCTCTCCAAAAGTTAATTGAAGGATT 57.060 30.769 0.00 0.00 0.00 3.01
173 174 8.386264 TCTCTCTCCAAAAGTTAATTGAAGGAT 58.614 33.333 0.00 0.00 0.00 3.24
174 175 7.745717 TCTCTCTCCAAAAGTTAATTGAAGGA 58.254 34.615 0.00 0.00 0.00 3.36
175 176 7.663493 ACTCTCTCTCCAAAAGTTAATTGAAGG 59.337 37.037 0.00 0.00 0.00 3.46
176 177 8.614469 ACTCTCTCTCCAAAAGTTAATTGAAG 57.386 34.615 0.00 0.00 0.00 3.02
177 178 8.210946 TGACTCTCTCTCCAAAAGTTAATTGAA 58.789 33.333 0.00 0.00 0.00 2.69
178 179 7.735917 TGACTCTCTCTCCAAAAGTTAATTGA 58.264 34.615 0.00 0.00 0.00 2.57
179 180 7.969536 TGACTCTCTCTCCAAAAGTTAATTG 57.030 36.000 0.00 0.00 0.00 2.32
180 181 7.445707 GGTTGACTCTCTCTCCAAAAGTTAATT 59.554 37.037 0.00 0.00 0.00 1.40
181 182 6.937465 GGTTGACTCTCTCTCCAAAAGTTAAT 59.063 38.462 0.00 0.00 0.00 1.40
182 183 6.099845 AGGTTGACTCTCTCTCCAAAAGTTAA 59.900 38.462 0.00 0.00 0.00 2.01
183 184 5.602978 AGGTTGACTCTCTCTCCAAAAGTTA 59.397 40.000 0.00 0.00 0.00 2.24
184 185 4.410555 AGGTTGACTCTCTCTCCAAAAGTT 59.589 41.667 0.00 0.00 0.00 2.66
185 186 3.970640 AGGTTGACTCTCTCTCCAAAAGT 59.029 43.478 0.00 0.00 0.00 2.66
186 187 4.615588 AGGTTGACTCTCTCTCCAAAAG 57.384 45.455 0.00 0.00 0.00 2.27
187 188 4.164221 ACAAGGTTGACTCTCTCTCCAAAA 59.836 41.667 0.00 0.00 0.00 2.44
188 189 3.711704 ACAAGGTTGACTCTCTCTCCAAA 59.288 43.478 0.00 0.00 0.00 3.28
189 190 3.309296 ACAAGGTTGACTCTCTCTCCAA 58.691 45.455 0.00 0.00 0.00 3.53
190 191 2.964209 ACAAGGTTGACTCTCTCTCCA 58.036 47.619 0.00 0.00 0.00 3.86
191 192 3.612955 CGAACAAGGTTGACTCTCTCTCC 60.613 52.174 0.00 0.00 0.00 3.71
192 193 3.004944 ACGAACAAGGTTGACTCTCTCTC 59.995 47.826 0.00 0.00 0.00 3.20
193 194 2.959707 ACGAACAAGGTTGACTCTCTCT 59.040 45.455 0.00 0.00 0.00 3.10
194 195 3.372660 ACGAACAAGGTTGACTCTCTC 57.627 47.619 0.00 0.00 0.00 3.20
195 196 4.931661 TTACGAACAAGGTTGACTCTCT 57.068 40.909 0.00 0.00 0.00 3.10
196 197 4.448060 CCTTTACGAACAAGGTTGACTCTC 59.552 45.833 0.00 0.00 36.74 3.20
197 198 4.377897 CCTTTACGAACAAGGTTGACTCT 58.622 43.478 0.00 0.00 36.74 3.24
198 199 4.727235 CCTTTACGAACAAGGTTGACTC 57.273 45.455 0.00 0.00 36.74 3.36
205 206 1.802365 CCGGAACCTTTACGAACAAGG 59.198 52.381 0.00 9.56 45.74 3.61
206 207 2.486918 ACCGGAACCTTTACGAACAAG 58.513 47.619 9.46 0.00 0.00 3.16
207 208 2.613133 CAACCGGAACCTTTACGAACAA 59.387 45.455 9.46 0.00 0.00 2.83
208 209 2.211806 CAACCGGAACCTTTACGAACA 58.788 47.619 9.46 0.00 0.00 3.18
209 210 1.532437 CCAACCGGAACCTTTACGAAC 59.468 52.381 9.46 0.00 0.00 3.95
210 211 1.881591 CCAACCGGAACCTTTACGAA 58.118 50.000 9.46 0.00 0.00 3.85
211 212 0.603439 GCCAACCGGAACCTTTACGA 60.603 55.000 9.46 0.00 0.00 3.43
212 213 0.885596 TGCCAACCGGAACCTTTACG 60.886 55.000 9.46 0.00 0.00 3.18
213 214 0.594602 GTGCCAACCGGAACCTTTAC 59.405 55.000 9.46 0.00 34.16 2.01
214 215 3.024431 GTGCCAACCGGAACCTTTA 57.976 52.632 9.46 0.00 34.16 1.85
215 216 3.850508 GTGCCAACCGGAACCTTT 58.149 55.556 9.46 0.00 34.16 3.11
225 226 1.832167 TGCCCTTGAAGGTGCCAAC 60.832 57.895 17.96 0.06 32.69 3.77
226 227 1.832167 GTGCCCTTGAAGGTGCCAA 60.832 57.895 17.96 2.54 32.69 4.52
227 228 2.203480 GTGCCCTTGAAGGTGCCA 60.203 61.111 17.96 7.17 32.69 4.92
228 229 2.991540 GGTGCCCTTGAAGGTGCC 60.992 66.667 17.96 10.19 32.69 5.01
229 230 3.365265 CGGTGCCCTTGAAGGTGC 61.365 66.667 10.82 13.33 31.93 5.01
230 231 2.463589 TAGCGGTGCCCTTGAAGGTG 62.464 60.000 10.82 2.95 31.93 4.00
231 232 2.185310 CTAGCGGTGCCCTTGAAGGT 62.185 60.000 10.82 0.00 31.93 3.50
232 233 1.450312 CTAGCGGTGCCCTTGAAGG 60.450 63.158 3.69 3.69 34.30 3.46
233 234 1.021390 CACTAGCGGTGCCCTTGAAG 61.021 60.000 0.00 0.00 39.22 3.02
234 235 1.003839 CACTAGCGGTGCCCTTGAA 60.004 57.895 0.00 0.00 39.22 2.69
235 236 2.662596 CACTAGCGGTGCCCTTGA 59.337 61.111 0.00 0.00 39.22 3.02
236 237 2.257409 ATCCACTAGCGGTGCCCTTG 62.257 60.000 0.00 0.00 44.08 3.61
237 238 1.995626 ATCCACTAGCGGTGCCCTT 60.996 57.895 0.00 0.00 44.08 3.95
238 239 2.365635 ATCCACTAGCGGTGCCCT 60.366 61.111 0.00 0.00 44.08 5.19
239 240 2.203070 CATCCACTAGCGGTGCCC 60.203 66.667 0.00 0.00 44.08 5.36
240 241 2.897350 GCATCCACTAGCGGTGCC 60.897 66.667 11.20 0.00 44.08 5.01
246 247 2.962253 GGTCGCGCATCCACTAGC 60.962 66.667 8.75 0.00 0.00 3.42
247 248 2.279517 GGGTCGCGCATCCACTAG 60.280 66.667 17.49 0.00 0.00 2.57
248 249 3.845259 GGGGTCGCGCATCCACTA 61.845 66.667 17.49 0.00 0.00 2.74
250 251 4.778143 AAGGGGTCGCGCATCCAC 62.778 66.667 17.49 14.69 0.00 4.02
251 252 4.776322 CAAGGGGTCGCGCATCCA 62.776 66.667 17.49 0.00 0.00 3.41
254 255 4.802051 ATGCAAGGGGTCGCGCAT 62.802 61.111 8.75 0.00 40.18 4.73
258 259 3.499737 CACGATGCAAGGGGTCGC 61.500 66.667 6.57 0.00 38.85 5.19
259 260 3.499737 GCACGATGCAAGGGGTCG 61.500 66.667 5.16 5.16 44.26 4.79
260 261 3.499737 CGCACGATGCAAGGGGTC 61.500 66.667 9.95 0.00 45.36 4.46
261 262 3.958147 CTCGCACGATGCAAGGGGT 62.958 63.158 9.95 0.00 45.36 4.95
262 263 3.197790 CTCGCACGATGCAAGGGG 61.198 66.667 9.95 0.00 45.36 4.79
263 264 2.434884 ACTCGCACGATGCAAGGG 60.435 61.111 9.95 0.00 45.36 3.95
264 265 2.029288 ACACTCGCACGATGCAAGG 61.029 57.895 9.95 0.00 45.36 3.61
265 266 1.131218 CACACTCGCACGATGCAAG 59.869 57.895 9.95 4.08 45.36 4.01
266 267 1.594021 ACACACTCGCACGATGCAA 60.594 52.632 9.95 0.00 45.36 4.08
267 268 2.028925 ACACACTCGCACGATGCA 59.971 55.556 9.95 0.00 45.36 3.96
268 269 1.354337 ATCACACACTCGCACGATGC 61.354 55.000 0.00 0.00 40.69 3.91
269 270 1.070821 AATCACACACTCGCACGATG 58.929 50.000 0.00 0.00 0.00 3.84
270 271 1.070821 CAATCACACACTCGCACGAT 58.929 50.000 0.00 0.00 0.00 3.73
271 272 0.249280 ACAATCACACACTCGCACGA 60.249 50.000 0.00 0.00 0.00 4.35
272 273 0.111134 CACAATCACACACTCGCACG 60.111 55.000 0.00 0.00 0.00 5.34
273 274 0.384725 GCACAATCACACACTCGCAC 60.385 55.000 0.00 0.00 0.00 5.34
274 275 1.506309 GGCACAATCACACACTCGCA 61.506 55.000 0.00 0.00 0.00 5.10
275 276 1.207593 GGCACAATCACACACTCGC 59.792 57.895 0.00 0.00 0.00 5.03
276 277 0.792640 GAGGCACAATCACACACTCG 59.207 55.000 0.00 0.00 0.00 4.18
277 278 1.160137 GGAGGCACAATCACACACTC 58.840 55.000 0.00 0.00 0.00 3.51
278 279 0.473755 TGGAGGCACAATCACACACT 59.526 50.000 0.00 0.00 0.00 3.55
279 280 0.593128 GTGGAGGCACAATCACACAC 59.407 55.000 0.00 0.00 0.00 3.82
280 281 0.182299 TGTGGAGGCACAATCACACA 59.818 50.000 0.00 0.00 35.52 3.72
281 282 3.019964 TGTGGAGGCACAATCACAC 57.980 52.632 0.00 0.00 35.52 3.82
282 283 0.537143 GGTGTGGAGGCACAATCACA 60.537 55.000 0.00 0.00 40.89 3.58
283 284 0.250901 AGGTGTGGAGGCACAATCAC 60.251 55.000 0.00 0.00 40.89 3.06
284 285 0.036732 GAGGTGTGGAGGCACAATCA 59.963 55.000 0.00 0.00 40.89 2.57
285 286 0.326264 AGAGGTGTGGAGGCACAATC 59.674 55.000 0.00 0.00 40.89 2.67
286 287 0.326264 GAGAGGTGTGGAGGCACAAT 59.674 55.000 0.00 0.00 40.89 2.71
287 288 1.754745 GAGAGGTGTGGAGGCACAA 59.245 57.895 0.00 0.00 40.89 3.33
288 289 2.217038 GGAGAGGTGTGGAGGCACA 61.217 63.158 0.00 0.00 40.89 4.57
289 290 1.768684 TTGGAGAGGTGTGGAGGCAC 61.769 60.000 0.00 0.00 38.56 5.01
290 291 0.842030 ATTGGAGAGGTGTGGAGGCA 60.842 55.000 0.00 0.00 0.00 4.75
291 292 0.393537 CATTGGAGAGGTGTGGAGGC 60.394 60.000 0.00 0.00 0.00 4.70
292 293 0.254178 CCATTGGAGAGGTGTGGAGG 59.746 60.000 0.00 0.00 31.59 4.30
293 294 1.279496 TCCATTGGAGAGGTGTGGAG 58.721 55.000 0.00 0.00 34.23 3.86
294 295 3.492686 TCCATTGGAGAGGTGTGGA 57.507 52.632 0.00 0.00 36.66 4.02
322 323 0.039764 GAAGTCCCTTCCTTTGGGGG 59.960 60.000 0.00 0.00 44.67 5.40
325 326 2.561478 TTCGAAGTCCCTTCCTTTGG 57.439 50.000 0.00 0.00 37.20 3.28
327 328 3.630769 GTGTTTTCGAAGTCCCTTCCTTT 59.369 43.478 0.00 0.00 37.20 3.11
328 329 3.211865 GTGTTTTCGAAGTCCCTTCCTT 58.788 45.455 0.00 0.00 37.20 3.36
332 333 3.146847 GGATGTGTTTTCGAAGTCCCTT 58.853 45.455 0.00 0.00 0.00 3.95
334 335 2.742589 GAGGATGTGTTTTCGAAGTCCC 59.257 50.000 0.00 0.00 0.00 4.46
335 336 2.412089 CGAGGATGTGTTTTCGAAGTCC 59.588 50.000 0.00 1.34 35.19 3.85
336 337 3.057734 ACGAGGATGTGTTTTCGAAGTC 58.942 45.455 0.00 0.00 36.89 3.01
365 366 6.870439 GGTACGAAGTAACCATAAGTGAAGTT 59.130 38.462 0.00 0.00 46.65 2.66
385 386 3.042887 GCTTGCACAAAGAAAAGGTACG 58.957 45.455 0.00 0.00 38.24 3.67
393 394 5.042593 CACAATACAAGCTTGCACAAAGAA 58.957 37.500 26.27 2.46 38.24 2.52
406 407 6.198216 GCACAAGGTAAAACACACAATACAAG 59.802 38.462 0.00 0.00 0.00 3.16
445 446 4.391830 ACAACCTATATGACAAGCAACACG 59.608 41.667 0.00 0.00 0.00 4.49
516 518 8.504812 AACAATTTTTAACCTCTGCACAAATT 57.495 26.923 0.00 0.00 0.00 1.82
523 525 6.861572 GGTGACTAACAATTTTTAACCTCTGC 59.138 38.462 0.00 0.00 0.00 4.26
524 526 7.013846 TGGGTGACTAACAATTTTTAACCTCTG 59.986 37.037 4.50 0.00 0.00 3.35
546 548 0.178831 AAGAGGGAAGGTGGATGGGT 60.179 55.000 0.00 0.00 0.00 4.51
549 551 2.040278 TCAACAAGAGGGAAGGTGGATG 59.960 50.000 0.00 0.00 0.00 3.51
552 554 1.545651 GGTCAACAAGAGGGAAGGTGG 60.546 57.143 0.00 0.00 0.00 4.61
557 559 3.772572 TCGATATGGTCAACAAGAGGGAA 59.227 43.478 0.00 0.00 0.00 3.97
558 560 3.371034 TCGATATGGTCAACAAGAGGGA 58.629 45.455 0.00 0.00 0.00 4.20
565 568 5.128663 TCTGAAAGGATCGATATGGTCAACA 59.871 40.000 0.00 0.00 0.00 3.33
576 579 5.805486 CGTTCACTAATTCTGAAAGGATCGA 59.195 40.000 0.00 0.00 22.58 3.59
651 654 5.452078 TCCGAGTTTTGAAAAATGCTCAT 57.548 34.783 0.00 0.00 0.00 2.90
653 656 5.040635 TGTTCCGAGTTTTGAAAAATGCTC 58.959 37.500 0.00 0.00 0.00 4.26
671 674 6.863126 AGTTCATGAATTTCAAACGATGTTCC 59.137 34.615 12.12 0.00 0.00 3.62
708 711 5.179368 TCGGAGAGCTAAAACAATGTTCAAG 59.821 40.000 0.00 1.27 0.00 3.02
772 775 2.203209 GGCCGGTGCTATGGAAGG 60.203 66.667 1.90 0.00 37.74 3.46
794 797 9.232082 TGTTTGAATTTCTTTTTCATACGTCAG 57.768 29.630 0.00 0.00 37.65 3.51
796 799 9.993881 CATGTTTGAATTTCTTTTTCATACGTC 57.006 29.630 0.00 0.00 37.65 4.34
804 807 9.887406 GATCAATGCATGTTTGAATTTCTTTTT 57.113 25.926 14.49 0.00 36.72 1.94
805 808 8.508875 GGATCAATGCATGTTTGAATTTCTTTT 58.491 29.630 14.49 0.12 36.72 2.27
806 809 7.881232 AGGATCAATGCATGTTTGAATTTCTTT 59.119 29.630 14.49 0.69 36.72 2.52
809 812 7.605410 AAGGATCAATGCATGTTTGAATTTC 57.395 32.000 14.49 9.37 36.72 2.17
813 816 5.048154 TCGAAAGGATCAATGCATGTTTGAA 60.048 36.000 14.49 2.78 36.72 2.69
852 1299 1.278127 GGATCGGAGGGTTCACTCAAA 59.722 52.381 4.44 0.00 39.27 2.69
853 1300 0.902531 GGATCGGAGGGTTCACTCAA 59.097 55.000 4.44 0.00 39.27 3.02
854 1301 0.252057 TGGATCGGAGGGTTCACTCA 60.252 55.000 4.44 0.00 39.27 3.41
855 1302 0.902531 TTGGATCGGAGGGTTCACTC 59.097 55.000 0.00 0.00 36.76 3.51
857 1304 2.194201 TTTTGGATCGGAGGGTTCAC 57.806 50.000 0.00 0.00 0.00 3.18
858 1305 4.018779 ACTTATTTTGGATCGGAGGGTTCA 60.019 41.667 0.00 0.00 0.00 3.18
859 1306 4.335594 CACTTATTTTGGATCGGAGGGTTC 59.664 45.833 0.00 0.00 0.00 3.62
868 1958 8.357402 ACTAAAACCACACACTTATTTTGGATC 58.643 33.333 0.00 0.00 0.00 3.36
880 1970 9.152595 TCCAAAATTTAAACTAAAACCACACAC 57.847 29.630 0.00 0.00 0.00 3.82
896 1986 7.867921 TGCTACTCCTTCCTATCCAAAATTTA 58.132 34.615 0.00 0.00 0.00 1.40
908 1998 2.433970 GCTGAATCTGCTACTCCTTCCT 59.566 50.000 4.82 0.00 0.00 3.36
912 2002 1.127343 GGGCTGAATCTGCTACTCCT 58.873 55.000 11.74 0.00 0.00 3.69
939 2029 0.179468 TATGTGGGCTCCGTTTAGGC 59.821 55.000 0.00 0.00 40.77 3.93
942 2032 2.294074 GCATTATGTGGGCTCCGTTTA 58.706 47.619 0.00 0.00 0.00 2.01
1137 2227 3.037941 CCGGATATGGAGAGACGGT 57.962 57.895 0.00 0.00 36.78 4.83
1275 2365 1.302383 CCGAACCATGGCGTTGCTTA 61.302 55.000 13.04 0.00 0.00 3.09
1355 2445 8.491045 AAATTAGGAATCACCAAGGAAAAAGA 57.509 30.769 0.00 0.00 42.04 2.52
1551 2641 1.456705 GTTGACAAAGGCCACCCCA 60.457 57.895 5.01 0.00 35.39 4.96
1560 2650 3.063997 ACAAAGCACTCTCGTTGACAAAG 59.936 43.478 0.00 0.00 31.47 2.77
1563 2653 2.309528 ACAAAGCACTCTCGTTGACA 57.690 45.000 0.00 0.00 31.47 3.58
1566 2656 2.351418 TGACAACAAAGCACTCTCGTTG 59.649 45.455 0.00 0.00 42.04 4.10
1567 2657 2.627945 TGACAACAAAGCACTCTCGTT 58.372 42.857 0.00 0.00 0.00 3.85
1587 2677 3.251004 GCTCAACTTCACATTCGGTCTTT 59.749 43.478 0.00 0.00 0.00 2.52
1591 2681 2.146342 CTGCTCAACTTCACATTCGGT 58.854 47.619 0.00 0.00 0.00 4.69
1626 2716 5.560966 ACAAACTCGACACAATTGACTTT 57.439 34.783 13.59 0.00 0.00 2.66
1650 2740 1.064758 TGCATTGCTTTATCTCCCGGT 60.065 47.619 10.49 0.00 0.00 5.28
1672 2762 3.607741 ACACATCATCAAGAGAGGCAAG 58.392 45.455 0.00 0.00 0.00 4.01
1713 2803 2.759114 CTCAGCCTGCTTTCCCCA 59.241 61.111 0.00 0.00 0.00 4.96
1716 2806 1.077858 CTCCCTCAGCCTGCTTTCC 60.078 63.158 0.00 0.00 0.00 3.13
1750 2840 1.622811 CTCCCTCCCAGTATCATCAGC 59.377 57.143 0.00 0.00 0.00 4.26
1821 2911 4.627611 AGCATGTGCAATCACTGATAAC 57.372 40.909 7.83 0.00 45.16 1.89
1836 2927 3.916761 ACAATTTGCAATCGAAGCATGT 58.083 36.364 15.39 13.72 42.33 3.21
1882 2973 2.198827 ATCACCGAATGGAAAGCACA 57.801 45.000 0.00 0.00 39.21 4.57
1925 3016 6.237942 CCAGTGCAATCTGAAGAACGTATAAG 60.238 42.308 5.92 0.00 37.61 1.73
1927 3018 5.105513 TCCAGTGCAATCTGAAGAACGTATA 60.106 40.000 5.92 0.00 37.61 1.47
1964 3055 3.253432 CACATGATCCCAGCATGATCTTG 59.747 47.826 8.67 17.09 44.49 3.02
2042 3133 4.096382 CGAACAAATCATAAGGGGAACAGG 59.904 45.833 0.00 0.00 0.00 4.00
2044 3135 3.442273 GCGAACAAATCATAAGGGGAACA 59.558 43.478 0.00 0.00 0.00 3.18
2050 3141 4.155826 TCAACAGGCGAACAAATCATAAGG 59.844 41.667 0.00 0.00 0.00 2.69
2224 3315 5.171339 ACCTATCAAATTCACAGAGCAGT 57.829 39.130 0.00 0.00 0.00 4.40
2294 3385 8.630054 AAGCACATAACCAGTTAGAATAAACA 57.370 30.769 0.00 0.00 0.00 2.83
2317 3408 7.920738 AGAAGTTGCTGTGTCTTTAAACTAAG 58.079 34.615 0.00 0.00 0.00 2.18
2709 3800 3.367327 CAGAGAAAGCAGACTCATCGTTG 59.633 47.826 0.00 0.00 35.83 4.10
2711 3802 2.822561 TCAGAGAAAGCAGACTCATCGT 59.177 45.455 0.00 0.00 35.83 3.73
2734 3825 3.998099 TCGACATATCAGGCAGAGAAG 57.002 47.619 0.00 0.00 0.00 2.85
2787 3878 0.746659 ACTTGTGCCTTGTGCTTTCC 59.253 50.000 0.00 0.00 42.00 3.13
3028 4119 8.397906 TGATTTGCTTAACTACTGATAACATGC 58.602 33.333 0.00 0.00 0.00 4.06
3175 4266 6.882610 ACTGAATCAGTGCACTATCAAAAA 57.117 33.333 21.20 1.42 43.63 1.94
3358 4449 5.007332 CAGTAACCGGATGTTAAAGTATGCC 59.993 44.000 9.46 0.00 41.00 4.40
3606 4699 7.732025 TCACTCTACATGTTTTAACTTGAGGA 58.268 34.615 2.30 9.90 37.47 3.71
3678 4782 2.440409 CTGCAGCTACCCAAAGTCAAT 58.560 47.619 0.00 0.00 0.00 2.57
3679 4783 1.545428 CCTGCAGCTACCCAAAGTCAA 60.545 52.381 8.66 0.00 0.00 3.18
3839 4956 4.920376 AGTGACAAATGCAACAGTGTAAC 58.080 39.130 0.00 0.00 0.00 2.50
3898 5070 7.651808 ACAGACTGTGTATTCCTTCAATTTTG 58.348 34.615 7.47 0.00 37.75 2.44
3916 5088 6.516355 CGTCATTTTCAATTCGTAACAGACTG 59.484 38.462 0.00 0.00 0.00 3.51
3964 5136 5.290643 GCCGCAATTTCTAATATTGTTTGCA 59.709 36.000 16.03 0.00 38.24 4.08
4098 5270 3.258622 AGGACTTAACTGTCTCGGAAAGG 59.741 47.826 0.00 0.00 37.16 3.11
4291 5465 1.002576 CAAGAACGAGCACATGCACAA 60.003 47.619 6.64 0.00 45.16 3.33
4452 5626 2.014128 CCGGATAAATCCTTGCACGTT 58.986 47.619 0.00 0.00 44.93 3.99
4563 5737 3.699413 TCAATCAACATTCATCAGCCCA 58.301 40.909 0.00 0.00 0.00 5.36
4569 5743 5.402568 GCATCAGCATCAATCAACATTCATC 59.597 40.000 0.00 0.00 41.58 2.92
4622 5796 3.246226 GTCAACATCCTGCTAATACTGCG 59.754 47.826 0.00 0.00 0.00 5.18
4629 5803 3.578282 TGACTCAGTCAACATCCTGCTAA 59.422 43.478 4.55 0.00 39.78 3.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.