Multiple sequence alignment - TraesCS5A01G068400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G068400 chr5A 100.000 2495 0 0 1 2495 76741348 76743842 0.000000e+00 4608.0
1 TraesCS5A01G068400 chr5A 93.939 297 14 4 2201 2495 76749355 76749649 1.760000e-121 446.0
2 TraesCS5A01G068400 chr5A 95.000 100 2 2 743 839 332947205 332947304 1.200000e-33 154.0
3 TraesCS5A01G068400 chr5A 87.500 88 8 1 1 85 372930695 372930782 5.680000e-17 99.0
4 TraesCS5A01G068400 chr5D 92.430 1387 50 19 826 2202 80360155 80361496 0.000000e+00 1929.0
5 TraesCS5A01G068400 chr5D 93.665 442 20 4 311 746 80359719 80360158 0.000000e+00 654.0
6 TraesCS5A01G068400 chr5D 91.375 371 21 6 376 746 80187770 80187411 4.790000e-137 497.0
7 TraesCS5A01G068400 chr5D 97.849 93 2 0 495 587 80189380 80189288 7.140000e-36 161.0
8 TraesCS5A01G068400 chr5D 96.842 95 3 0 735 829 565714428 565714522 2.570000e-35 159.0
9 TraesCS5A01G068400 chr5D 96.471 85 3 0 1 85 80330027 80330111 9.300000e-30 141.0
10 TraesCS5A01G068400 chr5D 85.484 62 7 2 92 152 37373098 37373038 2.070000e-06 63.9
11 TraesCS5A01G068400 chr5B 91.703 1386 48 13 826 2202 89029726 89031053 0.000000e+00 1860.0
12 TraesCS5A01G068400 chr5B 91.740 678 33 11 74 746 89029070 89029729 0.000000e+00 920.0
13 TraesCS5A01G068400 chr5B 93.878 294 14 3 2201 2492 522853771 522854062 8.190000e-120 440.0
14 TraesCS5A01G068400 chr5B 90.588 85 8 0 1 85 89028940 89029024 2.030000e-21 113.0
15 TraesCS5A01G068400 chr6B 94.295 298 14 3 2200 2495 213156725 213156429 1.050000e-123 453.0
16 TraesCS5A01G068400 chr1B 94.276 297 14 3 2201 2495 60529143 60528848 3.780000e-123 451.0
17 TraesCS5A01G068400 chr1B 92.500 40 2 1 247 286 550289126 550289164 3.470000e-04 56.5
18 TraesCS5A01G068400 chr1B 100.000 28 0 0 247 274 32050038 32050011 4.000000e-03 52.8
19 TraesCS5A01G068400 chr6A 93.939 297 14 4 2201 2495 556298190 556297896 1.760000e-121 446.0
20 TraesCS5A01G068400 chr1A 93.645 299 16 3 2196 2492 592150898 592151195 6.330000e-121 444.0
21 TraesCS5A01G068400 chr7D 91.589 321 21 6 2179 2495 600489889 600489571 2.950000e-119 438.0
22 TraesCS5A01G068400 chr7D 98.889 90 1 0 742 831 51997456 51997367 7.140000e-36 161.0
23 TraesCS5A01G068400 chr7D 96.842 95 2 1 738 831 386759015 386759109 9.240000e-35 158.0
24 TraesCS5A01G068400 chr4A 93.289 298 16 4 2201 2495 739050736 739050440 1.060000e-118 436.0
25 TraesCS5A01G068400 chr2A 92.459 305 18 5 2191 2492 32976838 32977140 4.930000e-117 431.0
26 TraesCS5A01G068400 chr2A 97.222 36 1 0 86 121 36060182 36060217 7.450000e-06 62.1
27 TraesCS5A01G068400 chr2D 96.970 99 3 0 744 842 563959329 563959231 1.530000e-37 167.0
28 TraesCS5A01G068400 chr2D 95.918 98 1 2 743 838 14261788 14261692 3.320000e-34 156.0
29 TraesCS5A01G068400 chr2D 87.500 48 5 1 247 294 609761505 609761459 1.000000e-03 54.7
30 TraesCS5A01G068400 chr2D 100.000 28 0 0 247 274 20435963 20435990 4.000000e-03 52.8
31 TraesCS5A01G068400 chr7A 93.939 99 6 0 740 838 449734057 449734155 1.550000e-32 150.0
32 TraesCS5A01G068400 chr7A 90.991 111 6 4 745 855 461522669 461522563 2.000000e-31 147.0
33 TraesCS5A01G068400 chr7A 100.000 28 0 0 219 246 726978450 726978423 4.000000e-03 52.8
34 TraesCS5A01G068400 chr1D 97.701 87 2 0 743 829 356580415 356580329 1.550000e-32 150.0
35 TraesCS5A01G068400 chr1D 92.500 40 2 1 247 286 490361968 490361930 3.470000e-04 56.5
36 TraesCS5A01G068400 chr2B 95.000 40 1 1 247 286 5470940 5470978 7.450000e-06 62.1
37 TraesCS5A01G068400 chr2B 100.000 31 0 0 86 116 18198268 18198238 9.640000e-05 58.4
38 TraesCS5A01G068400 chrUn 88.889 45 4 1 247 291 348692369 348692412 1.000000e-03 54.7
39 TraesCS5A01G068400 chrUn 100.000 28 0 0 219 246 254809984 254809957 4.000000e-03 52.8
40 TraesCS5A01G068400 chr3D 100.000 28 0 0 247 274 338496913 338496940 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G068400 chr5A 76741348 76743842 2494 False 4608.000000 4608 100.000000 1 2495 1 chr5A.!!$F1 2494
1 TraesCS5A01G068400 chr5D 80359719 80361496 1777 False 1291.500000 1929 93.047500 311 2202 2 chr5D.!!$F3 1891
2 TraesCS5A01G068400 chr5D 80187411 80189380 1969 True 329.000000 497 94.612000 376 746 2 chr5D.!!$R2 370
3 TraesCS5A01G068400 chr5B 89028940 89031053 2113 False 964.333333 1860 91.343667 1 2202 3 chr5B.!!$F2 2201

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
942 2184 0.17902 TCACCAGCAAACCACTCCAG 60.179 55.0 0.0 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2257 3512 0.033504 ACAAATCTCGGTGTCGTGCT 59.966 50.0 0.0 0.0 37.69 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 6.090088 TGCAAAAATATATTCCGCAACACAAC 59.910 34.615 11.77 0.00 0.00 3.32
72 73 6.454981 GCAAAAATATATTCCGCAACACAACC 60.455 38.462 0.00 0.00 0.00 3.77
75 76 1.816074 TATTCCGCAACACAACCTCC 58.184 50.000 0.00 0.00 0.00 4.30
135 191 4.573607 GGCGGGTCTTTTAAATAGATTCGT 59.426 41.667 16.31 0.00 0.00 3.85
140 196 5.522824 GGTCTTTTAAATAGATTCGTCGGCT 59.477 40.000 0.00 0.00 0.00 5.52
169 225 7.931578 CGTAGCATCCCCCAAATAATAATTA 57.068 36.000 0.00 0.00 0.00 1.40
172 228 9.969001 GTAGCATCCCCCAAATAATAATTAGTA 57.031 33.333 0.00 0.00 0.00 1.82
199 255 9.705290 TTCTATGCGTGTATCATTGTTATGTAT 57.295 29.630 0.00 0.00 33.34 2.29
212 268 8.825774 TCATTGTTATGTATAGGCAGGACATAT 58.174 33.333 6.31 0.00 36.28 1.78
222 278 2.549992 GGCAGGACATATGCGGATTGTA 60.550 50.000 1.58 0.00 44.80 2.41
224 280 3.372206 GCAGGACATATGCGGATTGTATC 59.628 47.826 1.58 0.00 33.31 2.24
237 293 5.966742 GGATTGTATCCCCTTAATGCTTC 57.033 43.478 0.00 0.00 43.88 3.86
238 294 5.385198 GGATTGTATCCCCTTAATGCTTCA 58.615 41.667 0.00 0.00 43.88 3.02
239 295 6.012745 GGATTGTATCCCCTTAATGCTTCAT 58.987 40.000 0.00 0.00 43.88 2.57
240 296 6.494835 GGATTGTATCCCCTTAATGCTTCATT 59.505 38.462 0.00 0.00 43.88 2.57
241 297 7.015584 GGATTGTATCCCCTTAATGCTTCATTT 59.984 37.037 0.00 0.00 43.88 2.32
244 300 6.894654 TGTATCCCCTTAATGCTTCATTTTGA 59.105 34.615 0.00 0.00 35.54 2.69
258 314 6.815142 GCTTCATTTTGACCTTAATGCTTCAT 59.185 34.615 0.00 0.00 32.96 2.57
261 317 9.558396 TTCATTTTGACCTTAATGCTTCATTTT 57.442 25.926 0.00 0.00 35.54 1.82
340 400 6.039616 GGAAACAACTGCACAAAAACTATGA 58.960 36.000 0.00 0.00 0.00 2.15
341 401 6.701400 GGAAACAACTGCACAAAAACTATGAT 59.299 34.615 0.00 0.00 0.00 2.45
357 418 5.990408 ACTATGATATGCGCTGCTAAAAAC 58.010 37.500 9.73 0.00 0.00 2.43
358 419 3.691049 TGATATGCGCTGCTAAAAACC 57.309 42.857 9.73 0.00 0.00 3.27
361 422 0.897863 ATGCGCTGCTAAAAACCCCA 60.898 50.000 9.73 0.00 0.00 4.96
362 423 1.080772 GCGCTGCTAAAAACCCCAC 60.081 57.895 0.00 0.00 0.00 4.61
363 424 1.524008 GCGCTGCTAAAAACCCCACT 61.524 55.000 0.00 0.00 0.00 4.00
364 425 1.816074 CGCTGCTAAAAACCCCACTA 58.184 50.000 0.00 0.00 0.00 2.74
394 1631 2.617532 GCCAGAAGAAGCAGAGGTTCAT 60.618 50.000 11.00 0.00 41.76 2.57
409 1646 2.607771 GGTTCATTGCAACAGCACGAAT 60.608 45.455 0.00 0.00 38.15 3.34
742 1982 7.863722 ACACACATACCCATACTTATTAACCA 58.136 34.615 0.00 0.00 0.00 3.67
743 1983 7.990886 ACACACATACCCATACTTATTAACCAG 59.009 37.037 0.00 0.00 0.00 4.00
744 1984 7.990886 CACACATACCCATACTTATTAACCAGT 59.009 37.037 0.00 0.00 0.00 4.00
745 1985 9.216148 ACACATACCCATACTTATTAACCAGTA 57.784 33.333 0.00 0.00 0.00 2.74
746 1986 9.485206 CACATACCCATACTTATTAACCAGTAC 57.515 37.037 0.00 0.00 0.00 2.73
747 1987 9.443365 ACATACCCATACTTATTAACCAGTACT 57.557 33.333 0.00 0.00 0.00 2.73
748 1988 9.924650 CATACCCATACTTATTAACCAGTACTC 57.075 37.037 0.00 0.00 0.00 2.59
749 1989 7.370905 ACCCATACTTATTAACCAGTACTCC 57.629 40.000 0.00 0.00 0.00 3.85
750 1990 6.328410 ACCCATACTTATTAACCAGTACTCCC 59.672 42.308 0.00 0.00 0.00 4.30
751 1991 6.557633 CCCATACTTATTAACCAGTACTCCCT 59.442 42.308 0.00 0.00 0.00 4.20
752 1992 7.256225 CCCATACTTATTAACCAGTACTCCCTC 60.256 44.444 0.00 0.00 0.00 4.30
753 1993 7.256225 CCATACTTATTAACCAGTACTCCCTCC 60.256 44.444 0.00 0.00 0.00 4.30
754 1994 4.648307 ACTTATTAACCAGTACTCCCTCCG 59.352 45.833 0.00 0.00 0.00 4.63
755 1995 2.610438 TTAACCAGTACTCCCTCCGT 57.390 50.000 0.00 0.00 0.00 4.69
756 1996 3.737559 TTAACCAGTACTCCCTCCGTA 57.262 47.619 0.00 0.00 0.00 4.02
757 1997 2.610438 AACCAGTACTCCCTCCGTAA 57.390 50.000 0.00 0.00 0.00 3.18
758 1998 2.610438 ACCAGTACTCCCTCCGTAAA 57.390 50.000 0.00 0.00 0.00 2.01
759 1999 2.174360 ACCAGTACTCCCTCCGTAAAC 58.826 52.381 0.00 0.00 0.00 2.01
760 2000 2.225217 ACCAGTACTCCCTCCGTAAACT 60.225 50.000 0.00 0.00 0.00 2.66
761 2001 3.010584 ACCAGTACTCCCTCCGTAAACTA 59.989 47.826 0.00 0.00 0.00 2.24
762 2002 4.019174 CCAGTACTCCCTCCGTAAACTAA 58.981 47.826 0.00 0.00 0.00 2.24
763 2003 4.648307 CCAGTACTCCCTCCGTAAACTAAT 59.352 45.833 0.00 0.00 0.00 1.73
764 2004 5.829924 CCAGTACTCCCTCCGTAAACTAATA 59.170 44.000 0.00 0.00 0.00 0.98
765 2005 6.492772 CCAGTACTCCCTCCGTAAACTAATAT 59.507 42.308 0.00 0.00 0.00 1.28
766 2006 7.667219 CCAGTACTCCCTCCGTAAACTAATATA 59.333 40.741 0.00 0.00 0.00 0.86
767 2007 9.071276 CAGTACTCCCTCCGTAAACTAATATAA 57.929 37.037 0.00 0.00 0.00 0.98
768 2008 9.294614 AGTACTCCCTCCGTAAACTAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
769 2009 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
770 2010 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
771 2011 8.003629 ACTCCCTCCGTAAACTAATATAAGAGT 58.996 37.037 0.00 0.00 0.00 3.24
772 2012 9.512588 CTCCCTCCGTAAACTAATATAAGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
942 2184 0.179020 TCACCAGCAAACCACTCCAG 60.179 55.000 0.00 0.00 0.00 3.86
1014 2260 1.303799 ACAGCATGAAGAGCAAGGCG 61.304 55.000 0.00 0.00 39.69 5.52
1167 2413 3.706373 GCGGTCTCCAAGGCCTCA 61.706 66.667 5.23 0.00 38.01 3.86
1431 2677 4.947147 GTGGCGGGGAGTGCACAA 62.947 66.667 21.04 0.00 0.00 3.33
1432 2678 4.947147 TGGCGGGGAGTGCACAAC 62.947 66.667 21.04 12.41 0.00 3.32
1433 2679 4.947147 GGCGGGGAGTGCACAACA 62.947 66.667 21.04 0.00 0.00 3.33
1470 2716 2.733593 GTCGAGGACACCACACGC 60.734 66.667 0.00 0.00 32.09 5.34
1478 2724 4.988598 CACCACACGCTCGGCCTT 62.989 66.667 0.00 0.00 0.00 4.35
1509 2755 0.385751 TCTGATGGAGCGATCGAACC 59.614 55.000 21.57 20.16 0.00 3.62
1554 2800 5.357032 AGGAATTGGCTCGTTTTGTATAAGG 59.643 40.000 0.00 0.00 0.00 2.69
1576 2823 7.088589 AGGATTGTTTCTTATTCCAACGATG 57.911 36.000 0.00 0.00 0.00 3.84
1584 2831 9.244799 GTTTCTTATTCCAACGATGTTTCTTTT 57.755 29.630 0.00 0.00 0.00 2.27
1724 2973 6.213397 TGATGATGAGGTTAGACTGGAAAGAA 59.787 38.462 0.00 0.00 0.00 2.52
1727 2976 4.489737 TGAGGTTAGACTGGAAAGAAGGA 58.510 43.478 0.00 0.00 0.00 3.36
1842 3091 3.222603 GGATTGCCGGGAATATTCAAGT 58.777 45.455 22.23 0.00 0.00 3.16
1924 3176 5.935206 TGTTGGCTAAACGATGATTCACTTA 59.065 36.000 0.00 0.00 42.10 2.24
2095 3350 0.448593 TATGCAAACTAAACGGCGCC 59.551 50.000 19.07 19.07 0.00 6.53
2096 3351 2.501008 GCAAACTAAACGGCGCCG 60.501 61.111 44.88 44.88 46.03 6.46
2121 3376 2.190578 CATGGAAGGGAGGTCGGC 59.809 66.667 0.00 0.00 0.00 5.54
2173 3428 3.157252 GGAGGATCTCCGGCAGCA 61.157 66.667 0.00 0.00 41.08 4.41
2202 3457 0.322975 GCTGGGAGATGTGACAGTGT 59.677 55.000 0.00 0.00 33.62 3.55
2203 3458 1.271054 GCTGGGAGATGTGACAGTGTT 60.271 52.381 0.00 0.00 33.62 3.32
2204 3459 2.028112 GCTGGGAGATGTGACAGTGTTA 60.028 50.000 0.00 0.00 33.62 2.41
2205 3460 3.854666 CTGGGAGATGTGACAGTGTTAG 58.145 50.000 0.00 0.00 0.00 2.34
2206 3461 3.506398 TGGGAGATGTGACAGTGTTAGA 58.494 45.455 0.00 0.00 0.00 2.10
2207 3462 3.901222 TGGGAGATGTGACAGTGTTAGAA 59.099 43.478 0.00 0.00 0.00 2.10
2208 3463 4.532126 TGGGAGATGTGACAGTGTTAGAAT 59.468 41.667 0.00 0.00 0.00 2.40
2209 3464 5.719563 TGGGAGATGTGACAGTGTTAGAATA 59.280 40.000 0.00 0.00 0.00 1.75
2210 3465 6.212589 TGGGAGATGTGACAGTGTTAGAATAA 59.787 38.462 0.00 0.00 0.00 1.40
2211 3466 7.103641 GGGAGATGTGACAGTGTTAGAATAAA 58.896 38.462 0.00 0.00 0.00 1.40
2212 3467 7.770897 GGGAGATGTGACAGTGTTAGAATAAAT 59.229 37.037 0.00 0.00 0.00 1.40
2213 3468 8.821894 GGAGATGTGACAGTGTTAGAATAAATC 58.178 37.037 0.00 0.00 0.00 2.17
2214 3469 8.723942 AGATGTGACAGTGTTAGAATAAATCC 57.276 34.615 0.00 0.00 0.00 3.01
2215 3470 6.961359 TGTGACAGTGTTAGAATAAATCCG 57.039 37.500 0.00 0.00 0.00 4.18
2216 3471 6.693466 TGTGACAGTGTTAGAATAAATCCGA 58.307 36.000 0.00 0.00 0.00 4.55
2217 3472 6.811665 TGTGACAGTGTTAGAATAAATCCGAG 59.188 38.462 0.00 0.00 0.00 4.63
2218 3473 6.255887 GTGACAGTGTTAGAATAAATCCGAGG 59.744 42.308 0.00 0.00 0.00 4.63
2219 3474 6.070995 TGACAGTGTTAGAATAAATCCGAGGT 60.071 38.462 0.00 0.00 0.00 3.85
2220 3475 7.123098 TGACAGTGTTAGAATAAATCCGAGGTA 59.877 37.037 0.00 0.00 0.00 3.08
2221 3476 7.844009 ACAGTGTTAGAATAAATCCGAGGTAA 58.156 34.615 0.00 0.00 0.00 2.85
2222 3477 8.483758 ACAGTGTTAGAATAAATCCGAGGTAAT 58.516 33.333 0.00 0.00 0.00 1.89
2223 3478 9.976511 CAGTGTTAGAATAAATCCGAGGTAATA 57.023 33.333 0.00 0.00 0.00 0.98
2224 3479 9.978044 AGTGTTAGAATAAATCCGAGGTAATAC 57.022 33.333 0.00 0.00 0.00 1.89
2225 3480 9.201127 GTGTTAGAATAAATCCGAGGTAATACC 57.799 37.037 0.07 0.07 38.99 2.73
2226 3481 8.084073 TGTTAGAATAAATCCGAGGTAATACCG 58.916 37.037 3.47 0.00 44.90 4.02
2227 3482 6.661304 AGAATAAATCCGAGGTAATACCGT 57.339 37.500 3.47 0.00 44.90 4.83
2228 3483 7.059202 AGAATAAATCCGAGGTAATACCGTT 57.941 36.000 3.47 0.00 44.90 4.44
2229 3484 6.927381 AGAATAAATCCGAGGTAATACCGTTG 59.073 38.462 3.47 0.00 44.90 4.10
2230 3485 4.741321 AAATCCGAGGTAATACCGTTGA 57.259 40.909 3.47 2.35 44.90 3.18
2231 3486 3.722728 ATCCGAGGTAATACCGTTGAC 57.277 47.619 3.47 0.00 44.90 3.18
2232 3487 1.750778 TCCGAGGTAATACCGTTGACC 59.249 52.381 3.47 0.00 44.90 4.02
2233 3488 1.477700 CCGAGGTAATACCGTTGACCA 59.522 52.381 3.47 0.00 44.90 4.02
2234 3489 2.101917 CCGAGGTAATACCGTTGACCAT 59.898 50.000 3.47 0.00 44.90 3.55
2235 3490 3.378339 CGAGGTAATACCGTTGACCATC 58.622 50.000 3.47 0.00 44.90 3.51
2236 3491 3.725490 GAGGTAATACCGTTGACCATCC 58.275 50.000 3.47 0.00 44.90 3.51
2237 3492 2.101917 AGGTAATACCGTTGACCATCCG 59.898 50.000 3.47 0.00 44.90 4.18
2238 3493 2.101249 GGTAATACCGTTGACCATCCGA 59.899 50.000 0.00 0.00 31.89 4.55
2239 3494 2.596904 AATACCGTTGACCATCCGAG 57.403 50.000 0.00 0.00 0.00 4.63
2240 3495 0.750850 ATACCGTTGACCATCCGAGG 59.249 55.000 0.00 0.00 0.00 4.63
2241 3496 0.323633 TACCGTTGACCATCCGAGGA 60.324 55.000 0.00 0.00 0.00 3.71
2242 3497 1.153628 CCGTTGACCATCCGAGGAC 60.154 63.158 0.00 0.00 0.00 3.85
2243 3498 1.153628 CGTTGACCATCCGAGGACC 60.154 63.158 0.00 0.00 0.00 4.46
2244 3499 1.884075 CGTTGACCATCCGAGGACCA 61.884 60.000 0.00 0.00 0.00 4.02
2245 3500 0.323629 GTTGACCATCCGAGGACCAA 59.676 55.000 0.00 0.00 0.00 3.67
2246 3501 0.613260 TTGACCATCCGAGGACCAAG 59.387 55.000 0.00 0.00 0.00 3.61
2247 3502 1.153349 GACCATCCGAGGACCAAGC 60.153 63.158 0.00 0.00 0.00 4.01
2248 3503 1.899437 GACCATCCGAGGACCAAGCA 61.899 60.000 0.00 0.00 0.00 3.91
2249 3504 1.299648 CCATCCGAGGACCAAGCAA 59.700 57.895 0.00 0.00 0.00 3.91
2250 3505 0.107017 CCATCCGAGGACCAAGCAAT 60.107 55.000 0.00 0.00 0.00 3.56
2251 3506 1.303309 CATCCGAGGACCAAGCAATC 58.697 55.000 0.00 0.00 0.00 2.67
2252 3507 0.911769 ATCCGAGGACCAAGCAATCA 59.088 50.000 0.00 0.00 0.00 2.57
2253 3508 0.036388 TCCGAGGACCAAGCAATCAC 60.036 55.000 0.00 0.00 0.00 3.06
2254 3509 0.321564 CCGAGGACCAAGCAATCACA 60.322 55.000 0.00 0.00 0.00 3.58
2255 3510 0.798776 CGAGGACCAAGCAATCACAC 59.201 55.000 0.00 0.00 0.00 3.82
2256 3511 0.798776 GAGGACCAAGCAATCACACG 59.201 55.000 0.00 0.00 0.00 4.49
2257 3512 0.396435 AGGACCAAGCAATCACACGA 59.604 50.000 0.00 0.00 0.00 4.35
2258 3513 0.798776 GGACCAAGCAATCACACGAG 59.201 55.000 0.00 0.00 0.00 4.18
2259 3514 0.166814 GACCAAGCAATCACACGAGC 59.833 55.000 0.00 0.00 0.00 5.03
2260 3515 0.534877 ACCAAGCAATCACACGAGCA 60.535 50.000 0.00 0.00 0.00 4.26
2261 3516 0.110056 CCAAGCAATCACACGAGCAC 60.110 55.000 0.00 0.00 0.00 4.40
2262 3517 0.451628 CAAGCAATCACACGAGCACG 60.452 55.000 0.76 0.76 45.75 5.34
2263 3518 0.599991 AAGCAATCACACGAGCACGA 60.600 50.000 11.40 0.00 42.66 4.35
2264 3519 1.130613 GCAATCACACGAGCACGAC 59.869 57.895 11.40 0.00 42.66 4.34
2265 3520 1.556591 GCAATCACACGAGCACGACA 61.557 55.000 11.40 0.00 42.66 4.35
2266 3521 0.161658 CAATCACACGAGCACGACAC 59.838 55.000 11.40 0.00 42.66 3.67
2267 3522 0.944311 AATCACACGAGCACGACACC 60.944 55.000 11.40 0.00 42.66 4.16
2268 3523 3.394874 CACACGAGCACGACACCG 61.395 66.667 11.40 0.00 42.66 4.94
2269 3524 3.588906 ACACGAGCACGACACCGA 61.589 61.111 11.40 0.00 42.66 4.69
2270 3525 2.801162 CACGAGCACGACACCGAG 60.801 66.667 11.40 0.00 42.66 4.63
2271 3526 2.976350 ACGAGCACGACACCGAGA 60.976 61.111 11.40 0.00 42.66 4.04
2272 3527 2.333417 ACGAGCACGACACCGAGAT 61.333 57.895 11.40 0.00 42.66 2.75
2273 3528 1.154016 CGAGCACGACACCGAGATT 60.154 57.895 0.00 0.00 42.66 2.40
2274 3529 0.732880 CGAGCACGACACCGAGATTT 60.733 55.000 0.00 0.00 42.66 2.17
2275 3530 0.716108 GAGCACGACACCGAGATTTG 59.284 55.000 0.00 0.00 39.50 2.32
2276 3531 0.033504 AGCACGACACCGAGATTTGT 59.966 50.000 0.00 0.00 39.50 2.83
2277 3532 0.865769 GCACGACACCGAGATTTGTT 59.134 50.000 0.00 0.00 39.50 2.83
2278 3533 2.063266 GCACGACACCGAGATTTGTTA 58.937 47.619 0.00 0.00 39.50 2.41
2279 3534 2.477375 GCACGACACCGAGATTTGTTAA 59.523 45.455 0.00 0.00 39.50 2.01
2280 3535 3.663493 GCACGACACCGAGATTTGTTAAC 60.663 47.826 0.00 0.00 39.50 2.01
2281 3536 2.727798 ACGACACCGAGATTTGTTAACG 59.272 45.455 0.26 0.00 39.50 3.18
2282 3537 2.981805 CGACACCGAGATTTGTTAACGA 59.018 45.455 0.26 0.00 38.22 3.85
2283 3538 3.059044 CGACACCGAGATTTGTTAACGAG 59.941 47.826 0.26 0.00 38.22 4.18
2284 3539 3.323243 ACACCGAGATTTGTTAACGAGG 58.677 45.455 0.26 0.00 0.00 4.63
2285 3540 3.243975 ACACCGAGATTTGTTAACGAGGT 60.244 43.478 0.26 0.00 0.00 3.85
2286 3541 3.744426 CACCGAGATTTGTTAACGAGGTT 59.256 43.478 0.26 0.00 0.00 3.50
2287 3542 3.992427 ACCGAGATTTGTTAACGAGGTTC 59.008 43.478 0.26 0.00 0.00 3.62
2288 3543 3.991773 CCGAGATTTGTTAACGAGGTTCA 59.008 43.478 0.26 0.00 0.00 3.18
2289 3544 4.630069 CCGAGATTTGTTAACGAGGTTCAT 59.370 41.667 0.26 0.00 0.00 2.57
2290 3545 5.220416 CCGAGATTTGTTAACGAGGTTCATC 60.220 44.000 0.26 0.00 0.00 2.92
2292 3547 5.475719 AGATTTGTTAACGAGGTTCATCGA 58.524 37.500 13.45 0.00 45.56 3.59
2293 3548 6.106673 AGATTTGTTAACGAGGTTCATCGAT 58.893 36.000 13.45 4.51 45.56 3.59
2294 3549 7.262772 AGATTTGTTAACGAGGTTCATCGATA 58.737 34.615 13.45 3.54 45.56 2.92
2295 3550 7.926555 AGATTTGTTAACGAGGTTCATCGATAT 59.073 33.333 13.45 2.69 45.56 1.63
2296 3551 6.822073 TTGTTAACGAGGTTCATCGATATG 57.178 37.500 13.45 0.00 45.56 1.78
2297 3552 5.286438 TGTTAACGAGGTTCATCGATATGG 58.714 41.667 13.45 0.00 45.56 2.74
2298 3553 2.440539 ACGAGGTTCATCGATATGGC 57.559 50.000 13.45 0.00 45.56 4.40
2299 3554 1.964223 ACGAGGTTCATCGATATGGCT 59.036 47.619 13.45 0.00 45.56 4.75
2300 3555 3.154710 ACGAGGTTCATCGATATGGCTA 58.845 45.455 13.45 0.00 45.56 3.93
2301 3556 3.057456 ACGAGGTTCATCGATATGGCTAC 60.057 47.826 13.45 0.00 45.56 3.58
2302 3557 3.057526 CGAGGTTCATCGATATGGCTACA 60.058 47.826 0.00 0.00 45.56 2.74
2303 3558 4.380973 CGAGGTTCATCGATATGGCTACAT 60.381 45.833 0.00 0.00 45.56 2.29
2304 3559 5.078411 AGGTTCATCGATATGGCTACATC 57.922 43.478 0.00 0.00 38.53 3.06
2305 3560 4.081420 AGGTTCATCGATATGGCTACATCC 60.081 45.833 0.00 0.00 38.53 3.51
2306 3561 4.184629 GTTCATCGATATGGCTACATCCC 58.815 47.826 0.00 0.00 38.53 3.85
2307 3562 2.766263 TCATCGATATGGCTACATCCCC 59.234 50.000 0.00 0.00 38.53 4.81
2308 3563 1.182667 TCGATATGGCTACATCCCCG 58.817 55.000 0.00 0.00 38.53 5.73
2309 3564 1.182667 CGATATGGCTACATCCCCGA 58.817 55.000 0.00 0.00 38.53 5.14
2310 3565 1.135139 CGATATGGCTACATCCCCGAG 59.865 57.143 0.00 0.00 38.53 4.63
2311 3566 0.905357 ATATGGCTACATCCCCGAGC 59.095 55.000 0.00 0.00 38.53 5.03
2312 3567 0.178932 TATGGCTACATCCCCGAGCT 60.179 55.000 0.00 0.00 38.53 4.09
2313 3568 1.056700 ATGGCTACATCCCCGAGCTT 61.057 55.000 0.00 0.00 36.43 3.74
2314 3569 1.227674 GGCTACATCCCCGAGCTTG 60.228 63.158 0.00 0.00 36.43 4.01
2315 3570 1.686325 GGCTACATCCCCGAGCTTGA 61.686 60.000 1.22 0.00 36.43 3.02
2316 3571 0.530870 GCTACATCCCCGAGCTTGAC 60.531 60.000 1.22 0.00 33.28 3.18
2317 3572 1.115467 CTACATCCCCGAGCTTGACT 58.885 55.000 1.22 0.00 0.00 3.41
2318 3573 2.307768 CTACATCCCCGAGCTTGACTA 58.692 52.381 1.22 0.00 0.00 2.59
2319 3574 0.824759 ACATCCCCGAGCTTGACTAC 59.175 55.000 1.22 0.00 0.00 2.73
2320 3575 0.249073 CATCCCCGAGCTTGACTACG 60.249 60.000 1.22 0.00 0.00 3.51
2321 3576 1.392710 ATCCCCGAGCTTGACTACGG 61.393 60.000 1.22 1.91 44.16 4.02
2323 3578 2.202756 CCGAGCTTGACTACGGGC 60.203 66.667 1.22 0.00 41.41 6.13
2324 3579 2.571757 CGAGCTTGACTACGGGCA 59.428 61.111 0.00 0.00 0.00 5.36
2325 3580 1.805945 CGAGCTTGACTACGGGCAC 60.806 63.158 0.00 0.00 0.00 5.01
2326 3581 1.592223 GAGCTTGACTACGGGCACT 59.408 57.895 0.00 0.00 0.00 4.40
2327 3582 0.458716 GAGCTTGACTACGGGCACTC 60.459 60.000 0.00 0.00 0.00 3.51
2328 3583 1.448013 GCTTGACTACGGGCACTCC 60.448 63.158 0.00 0.00 0.00 3.85
2329 3584 1.889530 GCTTGACTACGGGCACTCCT 61.890 60.000 0.00 0.00 0.00 3.69
2330 3585 0.173708 CTTGACTACGGGCACTCCTC 59.826 60.000 0.00 0.00 0.00 3.71
2331 3586 0.251653 TTGACTACGGGCACTCCTCT 60.252 55.000 0.00 0.00 0.00 3.69
2332 3587 0.680280 TGACTACGGGCACTCCTCTC 60.680 60.000 0.00 0.00 0.00 3.20
2333 3588 1.380112 ACTACGGGCACTCCTCTCC 60.380 63.158 0.00 0.00 0.00 3.71
2334 3589 1.379977 CTACGGGCACTCCTCTCCA 60.380 63.158 0.00 0.00 0.00 3.86
2335 3590 0.757188 CTACGGGCACTCCTCTCCAT 60.757 60.000 0.00 0.00 0.00 3.41
2336 3591 1.043116 TACGGGCACTCCTCTCCATG 61.043 60.000 0.00 0.00 0.00 3.66
2337 3592 2.060383 CGGGCACTCCTCTCCATGA 61.060 63.158 0.00 0.00 0.00 3.07
2338 3593 1.524482 GGGCACTCCTCTCCATGAC 59.476 63.158 0.00 0.00 0.00 3.06
2339 3594 1.267574 GGGCACTCCTCTCCATGACA 61.268 60.000 0.00 0.00 0.00 3.58
2340 3595 0.107945 GGCACTCCTCTCCATGACAC 60.108 60.000 0.00 0.00 0.00 3.67
2341 3596 0.107945 GCACTCCTCTCCATGACACC 60.108 60.000 0.00 0.00 0.00 4.16
2342 3597 1.269958 CACTCCTCTCCATGACACCA 58.730 55.000 0.00 0.00 0.00 4.17
2343 3598 1.066573 CACTCCTCTCCATGACACCAC 60.067 57.143 0.00 0.00 0.00 4.16
2344 3599 1.203237 ACTCCTCTCCATGACACCACT 60.203 52.381 0.00 0.00 0.00 4.00
2345 3600 2.043115 ACTCCTCTCCATGACACCACTA 59.957 50.000 0.00 0.00 0.00 2.74
2346 3601 2.428890 CTCCTCTCCATGACACCACTAC 59.571 54.545 0.00 0.00 0.00 2.73
2347 3602 2.179427 CCTCTCCATGACACCACTACA 58.821 52.381 0.00 0.00 0.00 2.74
2348 3603 2.567169 CCTCTCCATGACACCACTACAA 59.433 50.000 0.00 0.00 0.00 2.41
2349 3604 3.198635 CCTCTCCATGACACCACTACAAT 59.801 47.826 0.00 0.00 0.00 2.71
2350 3605 4.405680 CCTCTCCATGACACCACTACAATA 59.594 45.833 0.00 0.00 0.00 1.90
2351 3606 5.339008 TCTCCATGACACCACTACAATAC 57.661 43.478 0.00 0.00 0.00 1.89
2352 3607 4.161565 TCTCCATGACACCACTACAATACC 59.838 45.833 0.00 0.00 0.00 2.73
2353 3608 3.118920 TCCATGACACCACTACAATACCG 60.119 47.826 0.00 0.00 0.00 4.02
2354 3609 2.373540 TGACACCACTACAATACCGC 57.626 50.000 0.00 0.00 0.00 5.68
2355 3610 1.619332 TGACACCACTACAATACCGCA 59.381 47.619 0.00 0.00 0.00 5.69
2356 3611 1.997606 GACACCACTACAATACCGCAC 59.002 52.381 0.00 0.00 0.00 5.34
2357 3612 1.338389 ACACCACTACAATACCGCACC 60.338 52.381 0.00 0.00 0.00 5.01
2358 3613 0.251073 ACCACTACAATACCGCACCC 59.749 55.000 0.00 0.00 0.00 4.61
2359 3614 0.808453 CCACTACAATACCGCACCCG 60.808 60.000 0.00 0.00 0.00 5.28
2369 3624 4.770874 CGCACCCGGTTACCCTGG 62.771 72.222 0.00 0.00 40.80 4.45
2370 3625 3.324108 GCACCCGGTTACCCTGGA 61.324 66.667 11.05 0.00 37.29 3.86
2371 3626 2.666812 CACCCGGTTACCCTGGAC 59.333 66.667 11.05 0.00 37.29 4.02
2372 3627 2.204889 ACCCGGTTACCCTGGACA 59.795 61.111 11.05 0.00 37.29 4.02
2373 3628 1.229723 ACCCGGTTACCCTGGACAT 60.230 57.895 11.05 0.00 37.29 3.06
2374 3629 1.269703 ACCCGGTTACCCTGGACATC 61.270 60.000 11.05 0.00 37.29 3.06
2375 3630 1.143183 CCGGTTACCCTGGACATCG 59.857 63.158 0.00 0.00 0.00 3.84
2376 3631 1.143183 CGGTTACCCTGGACATCGG 59.857 63.158 0.00 0.00 0.00 4.18
2377 3632 1.153229 GGTTACCCTGGACATCGGC 60.153 63.158 0.00 0.00 0.00 5.54
2378 3633 1.600107 GTTACCCTGGACATCGGCA 59.400 57.895 0.00 0.00 0.00 5.69
2379 3634 0.743345 GTTACCCTGGACATCGGCAC 60.743 60.000 0.00 0.00 0.00 5.01
2380 3635 1.195442 TTACCCTGGACATCGGCACA 61.195 55.000 0.00 0.00 0.00 4.57
2381 3636 0.980754 TACCCTGGACATCGGCACAT 60.981 55.000 0.00 0.00 0.00 3.21
2382 3637 1.820906 CCCTGGACATCGGCACATG 60.821 63.158 0.00 0.00 0.00 3.21
2383 3638 2.475466 CCTGGACATCGGCACATGC 61.475 63.158 0.00 0.00 41.14 4.06
2407 3662 4.760047 CTCCCCTGCGTTCCGGTG 62.760 72.222 0.00 0.00 0.00 4.94
2410 3665 4.077184 CCCTGCGTTCCGGTGCTA 62.077 66.667 15.08 3.84 0.00 3.49
2411 3666 2.186903 CCTGCGTTCCGGTGCTAT 59.813 61.111 15.08 0.00 0.00 2.97
2412 3667 1.449601 CCTGCGTTCCGGTGCTATT 60.450 57.895 15.08 0.00 0.00 1.73
2413 3668 0.179094 CCTGCGTTCCGGTGCTATTA 60.179 55.000 15.08 0.00 0.00 0.98
2414 3669 1.540363 CCTGCGTTCCGGTGCTATTAT 60.540 52.381 15.08 0.00 0.00 1.28
2415 3670 1.526887 CTGCGTTCCGGTGCTATTATG 59.473 52.381 15.08 0.00 0.00 1.90
2416 3671 1.134640 TGCGTTCCGGTGCTATTATGT 60.135 47.619 15.08 0.00 0.00 2.29
2417 3672 1.937899 GCGTTCCGGTGCTATTATGTT 59.062 47.619 0.00 0.00 0.00 2.71
2418 3673 2.286184 GCGTTCCGGTGCTATTATGTTG 60.286 50.000 0.00 0.00 0.00 3.33
2419 3674 2.286833 CGTTCCGGTGCTATTATGTTGG 59.713 50.000 0.00 0.00 0.00 3.77
2420 3675 1.961793 TCCGGTGCTATTATGTTGGC 58.038 50.000 0.00 0.00 0.00 4.52
2421 3676 1.210722 TCCGGTGCTATTATGTTGGCA 59.789 47.619 0.00 0.00 0.00 4.92
2422 3677 2.158682 TCCGGTGCTATTATGTTGGCAT 60.159 45.455 0.00 0.00 37.05 4.40
2423 3678 3.071747 TCCGGTGCTATTATGTTGGCATA 59.928 43.478 0.00 0.00 37.05 3.14
2424 3679 3.436704 CCGGTGCTATTATGTTGGCATAG 59.563 47.826 0.00 0.00 38.64 2.23
2425 3680 3.436704 CGGTGCTATTATGTTGGCATAGG 59.563 47.826 0.00 0.00 38.64 2.57
2426 3681 4.398319 GGTGCTATTATGTTGGCATAGGT 58.602 43.478 0.00 0.00 38.64 3.08
2427 3682 4.827284 GGTGCTATTATGTTGGCATAGGTT 59.173 41.667 0.00 0.00 38.64 3.50
2428 3683 6.001460 GGTGCTATTATGTTGGCATAGGTTA 58.999 40.000 0.00 0.00 38.64 2.85
2429 3684 6.072673 GGTGCTATTATGTTGGCATAGGTTAC 60.073 42.308 0.00 0.00 38.64 2.50
2430 3685 6.485313 GTGCTATTATGTTGGCATAGGTTACA 59.515 38.462 0.00 0.00 38.64 2.41
2431 3686 7.174946 GTGCTATTATGTTGGCATAGGTTACAT 59.825 37.037 5.64 5.64 38.64 2.29
2432 3687 7.390440 TGCTATTATGTTGGCATAGGTTACATC 59.610 37.037 3.66 0.00 38.64 3.06
2433 3688 6.801539 ATTATGTTGGCATAGGTTACATCG 57.198 37.500 3.66 0.00 38.64 3.84
2434 3689 3.620427 TGTTGGCATAGGTTACATCGT 57.380 42.857 0.00 0.00 0.00 3.73
2435 3690 3.266636 TGTTGGCATAGGTTACATCGTG 58.733 45.455 0.00 0.00 0.00 4.35
2436 3691 3.267483 GTTGGCATAGGTTACATCGTGT 58.733 45.455 0.00 0.00 0.00 4.49
2437 3692 2.899976 TGGCATAGGTTACATCGTGTG 58.100 47.619 1.58 0.00 0.00 3.82
2438 3693 2.235155 TGGCATAGGTTACATCGTGTGT 59.765 45.455 1.58 1.87 44.95 3.72
2439 3694 2.864343 GGCATAGGTTACATCGTGTGTC 59.136 50.000 0.00 0.00 42.29 3.67
2440 3695 3.430374 GGCATAGGTTACATCGTGTGTCT 60.430 47.826 0.00 0.00 42.29 3.41
2441 3696 4.202080 GGCATAGGTTACATCGTGTGTCTA 60.202 45.833 0.00 0.00 42.29 2.59
2442 3697 4.738740 GCATAGGTTACATCGTGTGTCTAC 59.261 45.833 0.00 1.46 42.29 2.59
2443 3698 3.863142 AGGTTACATCGTGTGTCTACC 57.137 47.619 14.22 14.22 42.04 3.18
2444 3699 2.494870 AGGTTACATCGTGTGTCTACCC 59.505 50.000 16.46 7.75 42.39 3.69
2445 3700 2.417787 GGTTACATCGTGTGTCTACCCC 60.418 54.545 12.48 0.00 42.29 4.95
2446 3701 1.477553 TACATCGTGTGTCTACCCCC 58.522 55.000 0.00 0.00 42.29 5.40
2447 3702 1.141019 CATCGTGTGTCTACCCCCG 59.859 63.158 0.00 0.00 0.00 5.73
2448 3703 2.718073 ATCGTGTGTCTACCCCCGC 61.718 63.158 0.00 0.00 0.00 6.13
2449 3704 3.379445 CGTGTGTCTACCCCCGCT 61.379 66.667 0.00 0.00 0.00 5.52
2450 3705 2.048023 CGTGTGTCTACCCCCGCTA 61.048 63.158 0.00 0.00 0.00 4.26
2451 3706 1.389609 CGTGTGTCTACCCCCGCTAT 61.390 60.000 0.00 0.00 0.00 2.97
2452 3707 1.696063 GTGTGTCTACCCCCGCTATA 58.304 55.000 0.00 0.00 0.00 1.31
2453 3708 2.245582 GTGTGTCTACCCCCGCTATAT 58.754 52.381 0.00 0.00 0.00 0.86
2454 3709 3.424703 GTGTGTCTACCCCCGCTATATA 58.575 50.000 0.00 0.00 0.00 0.86
2455 3710 4.021916 GTGTGTCTACCCCCGCTATATAT 58.978 47.826 0.00 0.00 0.00 0.86
2456 3711 4.021229 TGTGTCTACCCCCGCTATATATG 58.979 47.826 0.00 0.00 0.00 1.78
2457 3712 4.264038 TGTGTCTACCCCCGCTATATATGA 60.264 45.833 0.00 0.00 0.00 2.15
2458 3713 4.338682 GTGTCTACCCCCGCTATATATGAG 59.661 50.000 0.00 0.00 0.00 2.90
2459 3714 4.228895 TGTCTACCCCCGCTATATATGAGA 59.771 45.833 0.00 0.00 0.00 3.27
2460 3715 4.822896 GTCTACCCCCGCTATATATGAGAG 59.177 50.000 0.00 0.00 0.00 3.20
2461 3716 4.725304 TCTACCCCCGCTATATATGAGAGA 59.275 45.833 0.00 0.00 0.00 3.10
2462 3717 3.633418 ACCCCCGCTATATATGAGAGAC 58.367 50.000 0.00 0.00 0.00 3.36
2463 3718 2.959707 CCCCCGCTATATATGAGAGACC 59.040 54.545 0.00 0.00 0.00 3.85
2464 3719 3.373220 CCCCCGCTATATATGAGAGACCT 60.373 52.174 0.00 0.00 0.00 3.85
2465 3720 4.141228 CCCCCGCTATATATGAGAGACCTA 60.141 50.000 0.00 0.00 0.00 3.08
2466 3721 5.067273 CCCCGCTATATATGAGAGACCTAG 58.933 50.000 0.00 0.00 0.00 3.02
2467 3722 5.067273 CCCGCTATATATGAGAGACCTAGG 58.933 50.000 7.41 7.41 0.00 3.02
2468 3723 5.163184 CCCGCTATATATGAGAGACCTAGGA 60.163 48.000 17.98 0.00 0.00 2.94
2469 3724 6.466615 CCCGCTATATATGAGAGACCTAGGAT 60.467 46.154 17.98 2.87 0.00 3.24
2470 3725 7.256727 CCCGCTATATATGAGAGACCTAGGATA 60.257 44.444 17.98 1.54 0.00 2.59
2471 3726 7.604927 CCGCTATATATGAGAGACCTAGGATAC 59.395 44.444 17.98 6.53 0.00 2.24
2472 3727 8.151596 CGCTATATATGAGAGACCTAGGATACA 58.848 40.741 17.98 8.41 41.41 2.29
2473 3728 9.854668 GCTATATATGAGAGACCTAGGATACAA 57.145 37.037 17.98 0.00 41.41 2.41
2476 3731 9.693739 ATATATGAGAGACCTAGGATACAAGTG 57.306 37.037 17.98 0.00 41.41 3.16
2477 3732 5.194473 TGAGAGACCTAGGATACAAGTGT 57.806 43.478 17.98 0.00 41.41 3.55
2478 3733 5.194432 TGAGAGACCTAGGATACAAGTGTC 58.806 45.833 17.98 0.00 41.41 3.67
2479 3734 4.538738 AGAGACCTAGGATACAAGTGTCC 58.461 47.826 17.98 7.82 40.69 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 8.349245 CGGAATATATTTTTGCAACATAGGTCA 58.651 33.333 0.00 0.00 0.00 4.02
38 39 7.145323 GCGGAATATATTTTTGCAACATAGGT 58.855 34.615 0.00 0.00 0.00 3.08
39 40 7.144661 TGCGGAATATATTTTTGCAACATAGG 58.855 34.615 14.19 0.00 0.00 2.57
71 72 3.689161 TCTGACATAATTTGCAACGGAGG 59.311 43.478 0.00 0.00 0.00 4.30
72 73 4.944962 TCTGACATAATTTGCAACGGAG 57.055 40.909 0.00 0.00 0.00 4.63
75 76 5.233957 TGGATCTGACATAATTTGCAACG 57.766 39.130 0.00 0.00 0.00 4.10
85 86 1.067060 CGAGCCGTTGGATCTGACATA 59.933 52.381 0.00 0.00 35.75 2.29
135 191 3.751401 GATGCTACGCGTCAGCCGA 62.751 63.158 26.56 15.94 43.32 5.54
140 196 3.845259 GGGGGATGCTACGCGTCA 61.845 66.667 18.63 9.59 45.37 4.35
169 225 9.929180 ATAACAATGATACACGCATAGAATACT 57.071 29.630 0.00 0.00 0.00 2.12
172 228 8.607441 ACATAACAATGATACACGCATAGAAT 57.393 30.769 0.00 0.00 0.00 2.40
188 244 7.554118 GCATATGTCCTGCCTATACATAACAAT 59.446 37.037 4.29 0.00 39.01 2.71
199 255 1.644509 ATCCGCATATGTCCTGCCTA 58.355 50.000 4.29 0.00 36.24 3.93
222 278 5.129320 GGTCAAAATGAAGCATTAAGGGGAT 59.871 40.000 0.00 0.00 32.43 3.85
224 280 4.467438 AGGTCAAAATGAAGCATTAAGGGG 59.533 41.667 0.00 0.00 32.43 4.79
226 282 9.090692 CATTAAGGTCAAAATGAAGCATTAAGG 57.909 33.333 0.00 0.00 35.53 2.69
227 283 8.598075 GCATTAAGGTCAAAATGAAGCATTAAG 58.402 33.333 0.00 0.00 35.53 1.85
228 284 8.313292 AGCATTAAGGTCAAAATGAAGCATTAA 58.687 29.630 0.00 0.00 35.53 1.40
230 286 6.704310 AGCATTAAGGTCAAAATGAAGCATT 58.296 32.000 0.00 0.00 35.53 3.56
231 287 6.290294 AGCATTAAGGTCAAAATGAAGCAT 57.710 33.333 0.00 0.00 35.53 3.79
233 289 6.158598 TGAAGCATTAAGGTCAAAATGAAGC 58.841 36.000 0.00 0.00 35.53 3.86
234 290 8.767478 AATGAAGCATTAAGGTCAAAATGAAG 57.233 30.769 0.00 0.00 35.53 3.02
235 291 9.558396 AAAATGAAGCATTAAGGTCAAAATGAA 57.442 25.926 0.00 0.00 35.53 2.57
236 292 8.991026 CAAAATGAAGCATTAAGGTCAAAATGA 58.009 29.630 0.00 0.00 35.53 2.57
237 293 8.991026 TCAAAATGAAGCATTAAGGTCAAAATG 58.009 29.630 0.00 0.00 32.43 2.32
238 294 9.211485 CTCAAAATGAAGCATTAAGGTCAAAAT 57.789 29.630 0.00 0.00 32.43 1.82
239 295 8.203485 ACTCAAAATGAAGCATTAAGGTCAAAA 58.797 29.630 0.00 0.00 32.43 2.44
240 296 7.725251 ACTCAAAATGAAGCATTAAGGTCAAA 58.275 30.769 0.00 0.00 32.43 2.69
241 297 7.014134 TGACTCAAAATGAAGCATTAAGGTCAA 59.986 33.333 0.00 0.00 32.43 3.18
244 300 6.899393 TGACTCAAAATGAAGCATTAAGGT 57.101 33.333 0.00 0.00 32.43 3.50
340 400 1.681264 GGGGTTTTTAGCAGCGCATAT 59.319 47.619 11.47 0.00 0.00 1.78
341 401 1.099689 GGGGTTTTTAGCAGCGCATA 58.900 50.000 11.47 0.00 0.00 3.14
357 418 1.349026 CTGGCCTGTCATATAGTGGGG 59.651 57.143 3.32 0.00 0.00 4.96
358 419 2.329267 TCTGGCCTGTCATATAGTGGG 58.671 52.381 3.32 0.00 0.00 4.61
361 422 4.202305 GCTTCTTCTGGCCTGTCATATAGT 60.202 45.833 3.32 0.00 0.00 2.12
362 423 4.202295 TGCTTCTTCTGGCCTGTCATATAG 60.202 45.833 3.32 0.06 0.00 1.31
363 424 3.711190 TGCTTCTTCTGGCCTGTCATATA 59.289 43.478 3.32 0.00 0.00 0.86
364 425 2.507058 TGCTTCTTCTGGCCTGTCATAT 59.493 45.455 3.32 0.00 0.00 1.78
394 1631 3.536158 GAAGTATTCGTGCTGTTGCAA 57.464 42.857 0.00 0.00 43.13 4.08
742 1982 9.294614 CTTATATTAGTTTACGGAGGGAGTACT 57.705 37.037 0.00 0.00 0.00 2.73
743 1983 9.289782 TCTTATATTAGTTTACGGAGGGAGTAC 57.710 37.037 0.00 0.00 0.00 2.73
744 1984 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
745 1985 8.003629 ACTCTTATATTAGTTTACGGAGGGAGT 58.996 37.037 0.00 0.00 0.00 3.85
746 1986 8.406730 ACTCTTATATTAGTTTACGGAGGGAG 57.593 38.462 0.00 0.00 0.00 4.30
799 2039 9.710818 TCCCTCTGTAAACTAATATAAGAGTGT 57.289 33.333 0.00 0.00 0.00 3.55
801 2041 9.939424 ACTCCCTCTGTAAACTAATATAAGAGT 57.061 33.333 0.00 0.00 0.00 3.24
811 2051 9.537852 TGTCTAAATTACTCCCTCTGTAAACTA 57.462 33.333 0.00 0.00 34.20 2.24
812 2052 8.431910 TGTCTAAATTACTCCCTCTGTAAACT 57.568 34.615 0.00 0.00 34.20 2.66
813 2053 9.152595 CTTGTCTAAATTACTCCCTCTGTAAAC 57.847 37.037 0.00 0.00 34.20 2.01
814 2054 7.822822 GCTTGTCTAAATTACTCCCTCTGTAAA 59.177 37.037 0.00 0.00 34.20 2.01
815 2055 7.038587 TGCTTGTCTAAATTACTCCCTCTGTAA 60.039 37.037 0.00 0.00 34.87 2.41
816 2056 6.439375 TGCTTGTCTAAATTACTCCCTCTGTA 59.561 38.462 0.00 0.00 0.00 2.74
817 2057 5.248477 TGCTTGTCTAAATTACTCCCTCTGT 59.752 40.000 0.00 0.00 0.00 3.41
818 2058 5.734720 TGCTTGTCTAAATTACTCCCTCTG 58.265 41.667 0.00 0.00 0.00 3.35
819 2059 6.374417 TTGCTTGTCTAAATTACTCCCTCT 57.626 37.500 0.00 0.00 0.00 3.69
820 2060 7.631717 ATTTGCTTGTCTAAATTACTCCCTC 57.368 36.000 0.00 0.00 0.00 4.30
824 2064 9.582223 GCGTATATTTGCTTGTCTAAATTACTC 57.418 33.333 0.00 0.00 0.00 2.59
942 2184 1.005867 TTACGGGACTTGCGGTGAC 60.006 57.895 0.00 0.00 0.00 3.67
1356 2602 3.450507 TCGTTCTCCGAGGCAACA 58.549 55.556 0.00 0.00 41.60 3.33
1418 2664 3.345808 CGTGTTGTGCACTCCCCG 61.346 66.667 19.41 11.35 45.57 5.73
1419 2665 3.660111 GCGTGTTGTGCACTCCCC 61.660 66.667 19.41 3.64 45.57 4.81
1420 2666 2.591715 AGCGTGTTGTGCACTCCC 60.592 61.111 19.41 6.22 45.57 4.30
1421 2667 2.633657 CAGCGTGTTGTGCACTCC 59.366 61.111 19.41 8.86 45.57 3.85
1422 2668 2.051882 GCAGCGTGTTGTGCACTC 60.052 61.111 19.41 11.68 45.57 3.51
1423 2669 3.585990 GGCAGCGTGTTGTGCACT 61.586 61.111 19.41 0.00 45.57 4.40
1424 2670 4.962122 CGGCAGCGTGTTGTGCAC 62.962 66.667 10.75 10.75 41.75 4.57
1426 2672 3.295228 CTACGGCAGCGTGTTGTGC 62.295 63.158 0.00 0.00 39.08 4.57
1427 2673 2.853210 CTACGGCAGCGTGTTGTG 59.147 61.111 0.00 0.00 0.00 3.33
1428 2674 3.041940 GCTACGGCAGCGTGTTGT 61.042 61.111 0.00 0.00 41.37 3.32
1497 2743 3.126831 AGATTGATTGGTTCGATCGCTC 58.873 45.455 11.09 5.53 46.23 5.03
1509 2755 4.500545 CCTCCTCGTGTCCTAGATTGATTG 60.501 50.000 0.00 0.00 0.00 2.67
1554 2800 8.742554 AAACATCGTTGGAATAAGAAACAATC 57.257 30.769 0.00 0.00 0.00 2.67
1565 2812 4.744631 GCACAAAAGAAACATCGTTGGAAT 59.255 37.500 0.00 0.00 0.00 3.01
1597 2846 3.354089 TGTAAGCAAAAGCAGAAGCAC 57.646 42.857 0.00 0.00 45.49 4.40
1626 2875 4.093998 CACTTTGCTCTGTCGATTAAGCAT 59.906 41.667 16.13 3.09 43.70 3.79
1631 2880 3.258372 ACTCCACTTTGCTCTGTCGATTA 59.742 43.478 0.00 0.00 0.00 1.75
1699 2948 5.721480 TCTTTCCAGTCTAACCTCATCATCA 59.279 40.000 0.00 0.00 0.00 3.07
1700 2949 6.227298 TCTTTCCAGTCTAACCTCATCATC 57.773 41.667 0.00 0.00 0.00 2.92
1701 2950 6.352565 CCTTCTTTCCAGTCTAACCTCATCAT 60.353 42.308 0.00 0.00 0.00 2.45
1712 2961 2.050144 TGTGCTCCTTCTTTCCAGTCT 58.950 47.619 0.00 0.00 0.00 3.24
1724 2973 1.407656 TTCACCGTCCTTGTGCTCCT 61.408 55.000 0.00 0.00 33.71 3.69
1727 2976 0.107410 TGTTTCACCGTCCTTGTGCT 60.107 50.000 0.00 0.00 33.71 4.40
1842 3091 3.006752 ACGGGGATAACGACAGTGTTAAA 59.993 43.478 0.00 0.00 37.81 1.52
1859 3108 1.540267 TTTAGCCAACATTCACGGGG 58.460 50.000 0.00 0.00 0.00 5.73
2060 3314 2.713967 ATACACGAACCCCCGTCCG 61.714 63.158 0.00 0.00 41.29 4.79
2095 3350 1.301244 CCCTTCCATGGCTCGATCG 60.301 63.158 9.36 9.36 0.00 3.69
2096 3351 0.034616 CTCCCTTCCATGGCTCGATC 59.965 60.000 6.96 0.00 0.00 3.69
2097 3352 1.414061 CCTCCCTTCCATGGCTCGAT 61.414 60.000 6.96 0.00 0.00 3.59
2098 3353 2.066393 CCTCCCTTCCATGGCTCGA 61.066 63.158 6.96 0.00 0.00 4.04
2132 3387 2.759973 TCCTCCCTGCCAGCGTAG 60.760 66.667 0.00 0.00 0.00 3.51
2173 3428 1.349026 CATCTCCCAGCCGACCATATT 59.651 52.381 0.00 0.00 0.00 1.28
2202 3457 8.181904 ACGGTATTACCTCGGATTTATTCTAA 57.818 34.615 11.05 0.00 35.66 2.10
2203 3458 7.765695 ACGGTATTACCTCGGATTTATTCTA 57.234 36.000 11.05 0.00 35.66 2.10
2204 3459 6.661304 ACGGTATTACCTCGGATTTATTCT 57.339 37.500 11.05 0.00 35.66 2.40
2205 3460 6.925165 TCAACGGTATTACCTCGGATTTATTC 59.075 38.462 11.05 0.00 35.66 1.75
2206 3461 6.703165 GTCAACGGTATTACCTCGGATTTATT 59.297 38.462 11.05 0.00 35.66 1.40
2207 3462 6.218746 GTCAACGGTATTACCTCGGATTTAT 58.781 40.000 11.05 0.00 35.66 1.40
2208 3463 5.451798 GGTCAACGGTATTACCTCGGATTTA 60.452 44.000 11.05 0.00 35.66 1.40
2209 3464 4.436332 GTCAACGGTATTACCTCGGATTT 58.564 43.478 11.05 0.00 35.66 2.17
2210 3465 3.181472 GGTCAACGGTATTACCTCGGATT 60.181 47.826 11.05 0.00 35.66 3.01
2211 3466 2.363359 GGTCAACGGTATTACCTCGGAT 59.637 50.000 11.05 0.00 35.66 4.18
2212 3467 1.750778 GGTCAACGGTATTACCTCGGA 59.249 52.381 11.05 2.80 35.66 4.55
2213 3468 1.477700 TGGTCAACGGTATTACCTCGG 59.522 52.381 11.05 0.00 35.66 4.63
2214 3469 2.945447 TGGTCAACGGTATTACCTCG 57.055 50.000 11.05 1.56 35.66 4.63
2215 3470 3.725490 GGATGGTCAACGGTATTACCTC 58.275 50.000 11.05 0.00 35.66 3.85
2216 3471 2.101917 CGGATGGTCAACGGTATTACCT 59.898 50.000 11.05 0.00 35.66 3.08
2217 3472 2.101249 TCGGATGGTCAACGGTATTACC 59.899 50.000 2.50 2.50 34.05 2.85
2218 3473 3.378339 CTCGGATGGTCAACGGTATTAC 58.622 50.000 0.00 0.00 0.00 1.89
2219 3474 2.363038 CCTCGGATGGTCAACGGTATTA 59.637 50.000 0.00 0.00 0.00 0.98
2220 3475 1.138266 CCTCGGATGGTCAACGGTATT 59.862 52.381 0.00 0.00 0.00 1.89
2221 3476 0.750850 CCTCGGATGGTCAACGGTAT 59.249 55.000 0.00 0.00 0.00 2.73
2222 3477 0.323633 TCCTCGGATGGTCAACGGTA 60.324 55.000 0.00 0.00 0.00 4.02
2223 3478 1.608336 TCCTCGGATGGTCAACGGT 60.608 57.895 0.00 0.00 0.00 4.83
2224 3479 1.153628 GTCCTCGGATGGTCAACGG 60.154 63.158 0.00 0.00 0.00 4.44
2225 3480 1.153628 GGTCCTCGGATGGTCAACG 60.154 63.158 0.00 0.00 0.00 4.10
2226 3481 0.323629 TTGGTCCTCGGATGGTCAAC 59.676 55.000 0.00 0.00 0.00 3.18
2227 3482 0.613260 CTTGGTCCTCGGATGGTCAA 59.387 55.000 0.00 0.00 0.00 3.18
2228 3483 1.899437 GCTTGGTCCTCGGATGGTCA 61.899 60.000 0.00 0.00 0.00 4.02
2229 3484 1.153349 GCTTGGTCCTCGGATGGTC 60.153 63.158 0.00 0.00 0.00 4.02
2230 3485 1.488705 TTGCTTGGTCCTCGGATGGT 61.489 55.000 0.00 0.00 0.00 3.55
2231 3486 0.107017 ATTGCTTGGTCCTCGGATGG 60.107 55.000 0.00 0.00 0.00 3.51
2232 3487 1.303309 GATTGCTTGGTCCTCGGATG 58.697 55.000 0.00 0.00 0.00 3.51
2233 3488 0.911769 TGATTGCTTGGTCCTCGGAT 59.088 50.000 0.00 0.00 0.00 4.18
2234 3489 0.036388 GTGATTGCTTGGTCCTCGGA 60.036 55.000 0.00 0.00 0.00 4.55
2235 3490 0.321564 TGTGATTGCTTGGTCCTCGG 60.322 55.000 0.00 0.00 0.00 4.63
2236 3491 0.798776 GTGTGATTGCTTGGTCCTCG 59.201 55.000 0.00 0.00 0.00 4.63
2237 3492 0.798776 CGTGTGATTGCTTGGTCCTC 59.201 55.000 0.00 0.00 0.00 3.71
2238 3493 0.396435 TCGTGTGATTGCTTGGTCCT 59.604 50.000 0.00 0.00 0.00 3.85
2239 3494 0.798776 CTCGTGTGATTGCTTGGTCC 59.201 55.000 0.00 0.00 0.00 4.46
2240 3495 0.166814 GCTCGTGTGATTGCTTGGTC 59.833 55.000 0.00 0.00 0.00 4.02
2241 3496 0.534877 TGCTCGTGTGATTGCTTGGT 60.535 50.000 0.00 0.00 0.00 3.67
2242 3497 0.110056 GTGCTCGTGTGATTGCTTGG 60.110 55.000 0.00 0.00 0.00 3.61
2243 3498 0.451628 CGTGCTCGTGTGATTGCTTG 60.452 55.000 0.00 0.00 0.00 4.01
2244 3499 0.599991 TCGTGCTCGTGTGATTGCTT 60.600 50.000 8.17 0.00 38.33 3.91
2245 3500 1.006220 TCGTGCTCGTGTGATTGCT 60.006 52.632 8.17 0.00 38.33 3.91
2246 3501 1.130613 GTCGTGCTCGTGTGATTGC 59.869 57.895 8.17 0.00 38.33 3.56
2247 3502 0.161658 GTGTCGTGCTCGTGTGATTG 59.838 55.000 8.17 0.00 38.33 2.67
2248 3503 0.944311 GGTGTCGTGCTCGTGTGATT 60.944 55.000 8.17 0.00 38.33 2.57
2249 3504 1.372997 GGTGTCGTGCTCGTGTGAT 60.373 57.895 8.17 0.00 38.33 3.06
2250 3505 2.027024 GGTGTCGTGCTCGTGTGA 59.973 61.111 8.17 0.00 38.33 3.58
2251 3506 3.394874 CGGTGTCGTGCTCGTGTG 61.395 66.667 8.17 0.00 38.33 3.82
2252 3507 3.538028 CTCGGTGTCGTGCTCGTGT 62.538 63.158 8.17 0.00 38.33 4.49
2253 3508 2.529005 ATCTCGGTGTCGTGCTCGTG 62.529 60.000 8.17 0.00 38.33 4.35
2254 3509 1.863662 AATCTCGGTGTCGTGCTCGT 61.864 55.000 8.17 0.00 38.33 4.18
2255 3510 0.732880 AAATCTCGGTGTCGTGCTCG 60.733 55.000 0.81 0.81 37.69 5.03
2256 3511 0.716108 CAAATCTCGGTGTCGTGCTC 59.284 55.000 0.00 0.00 37.69 4.26
2257 3512 0.033504 ACAAATCTCGGTGTCGTGCT 59.966 50.000 0.00 0.00 37.69 4.40
2258 3513 0.865769 AACAAATCTCGGTGTCGTGC 59.134 50.000 0.00 0.00 37.69 5.34
2259 3514 3.421312 CGTTAACAAATCTCGGTGTCGTG 60.421 47.826 6.39 0.00 37.69 4.35
2260 3515 2.727798 CGTTAACAAATCTCGGTGTCGT 59.272 45.455 6.39 0.00 37.69 4.34
2261 3516 2.981805 TCGTTAACAAATCTCGGTGTCG 59.018 45.455 6.39 0.00 37.82 4.35
2262 3517 3.367025 CCTCGTTAACAAATCTCGGTGTC 59.633 47.826 6.39 0.00 0.00 3.67
2263 3518 3.243975 ACCTCGTTAACAAATCTCGGTGT 60.244 43.478 6.39 0.00 0.00 4.16
2264 3519 3.323243 ACCTCGTTAACAAATCTCGGTG 58.677 45.455 6.39 0.00 0.00 4.94
2265 3520 3.672767 ACCTCGTTAACAAATCTCGGT 57.327 42.857 6.39 0.00 0.00 4.69
2266 3521 3.991773 TGAACCTCGTTAACAAATCTCGG 59.008 43.478 6.39 0.00 0.00 4.63
2267 3522 5.498700 CGATGAACCTCGTTAACAAATCTCG 60.499 44.000 6.39 0.25 34.00 4.04
2268 3523 5.575606 TCGATGAACCTCGTTAACAAATCTC 59.424 40.000 6.39 0.00 39.62 2.75
2269 3524 5.475719 TCGATGAACCTCGTTAACAAATCT 58.524 37.500 6.39 0.00 39.62 2.40
2270 3525 5.773239 TCGATGAACCTCGTTAACAAATC 57.227 39.130 6.39 0.00 39.62 2.17
2271 3526 7.042051 CCATATCGATGAACCTCGTTAACAAAT 60.042 37.037 8.54 0.00 39.62 2.32
2272 3527 6.256975 CCATATCGATGAACCTCGTTAACAAA 59.743 38.462 8.54 0.00 39.62 2.83
2273 3528 5.751509 CCATATCGATGAACCTCGTTAACAA 59.248 40.000 8.54 0.00 39.62 2.83
2274 3529 5.286438 CCATATCGATGAACCTCGTTAACA 58.714 41.667 8.54 0.00 39.62 2.41
2275 3530 4.150098 GCCATATCGATGAACCTCGTTAAC 59.850 45.833 8.54 0.00 39.62 2.01
2276 3531 4.038763 AGCCATATCGATGAACCTCGTTAA 59.961 41.667 8.54 0.00 39.62 2.01
2277 3532 3.572682 AGCCATATCGATGAACCTCGTTA 59.427 43.478 8.54 0.00 39.62 3.18
2278 3533 2.365617 AGCCATATCGATGAACCTCGTT 59.634 45.455 8.54 0.00 39.62 3.85
2279 3534 1.964223 AGCCATATCGATGAACCTCGT 59.036 47.619 8.54 0.00 39.62 4.18
2280 3535 2.732412 AGCCATATCGATGAACCTCG 57.268 50.000 8.54 0.00 39.99 4.63
2281 3536 4.521130 TGTAGCCATATCGATGAACCTC 57.479 45.455 8.54 0.00 34.73 3.85
2282 3537 4.081420 GGATGTAGCCATATCGATGAACCT 60.081 45.833 8.54 2.13 34.73 3.50
2283 3538 4.184629 GGATGTAGCCATATCGATGAACC 58.815 47.826 8.54 0.00 34.73 3.62
2284 3539 4.184629 GGGATGTAGCCATATCGATGAAC 58.815 47.826 8.54 0.00 34.73 3.18
2285 3540 3.197766 GGGGATGTAGCCATATCGATGAA 59.802 47.826 8.54 0.00 34.73 2.57
2286 3541 2.766263 GGGGATGTAGCCATATCGATGA 59.234 50.000 8.54 0.00 34.73 2.92
2287 3542 2.481969 CGGGGATGTAGCCATATCGATG 60.482 54.545 8.54 0.00 0.00 3.84
2288 3543 1.757118 CGGGGATGTAGCCATATCGAT 59.243 52.381 2.16 2.16 0.00 3.59
2289 3544 1.182667 CGGGGATGTAGCCATATCGA 58.817 55.000 0.00 0.00 0.00 3.59
2290 3545 1.135139 CTCGGGGATGTAGCCATATCG 59.865 57.143 0.00 0.00 0.00 2.92
2291 3546 1.134670 GCTCGGGGATGTAGCCATATC 60.135 57.143 0.00 0.00 0.00 1.63
2292 3547 0.905357 GCTCGGGGATGTAGCCATAT 59.095 55.000 0.00 0.00 0.00 1.78
2293 3548 0.178932 AGCTCGGGGATGTAGCCATA 60.179 55.000 0.00 0.00 36.92 2.74
2294 3549 1.056700 AAGCTCGGGGATGTAGCCAT 61.057 55.000 0.00 0.00 36.92 4.40
2295 3550 1.689233 AAGCTCGGGGATGTAGCCA 60.689 57.895 0.00 0.00 36.92 4.75
2296 3551 1.227674 CAAGCTCGGGGATGTAGCC 60.228 63.158 0.00 0.00 36.92 3.93
2297 3552 0.530870 GTCAAGCTCGGGGATGTAGC 60.531 60.000 0.00 0.00 36.48 3.58
2298 3553 1.115467 AGTCAAGCTCGGGGATGTAG 58.885 55.000 0.00 0.00 0.00 2.74
2299 3554 2.029623 GTAGTCAAGCTCGGGGATGTA 58.970 52.381 0.00 0.00 0.00 2.29
2300 3555 0.824759 GTAGTCAAGCTCGGGGATGT 59.175 55.000 0.00 0.00 0.00 3.06
2301 3556 0.249073 CGTAGTCAAGCTCGGGGATG 60.249 60.000 0.00 0.00 0.00 3.51
2302 3557 1.392710 CCGTAGTCAAGCTCGGGGAT 61.393 60.000 1.46 0.00 39.41 3.85
2303 3558 2.050350 CCGTAGTCAAGCTCGGGGA 61.050 63.158 1.46 0.00 39.41 4.81
2304 3559 2.494918 CCGTAGTCAAGCTCGGGG 59.505 66.667 1.46 0.00 39.41 5.73
2306 3561 2.202756 GCCCGTAGTCAAGCTCGG 60.203 66.667 2.41 2.41 42.22 4.63
2307 3562 1.805945 GTGCCCGTAGTCAAGCTCG 60.806 63.158 0.00 0.00 0.00 5.03
2308 3563 0.458716 GAGTGCCCGTAGTCAAGCTC 60.459 60.000 0.00 0.00 0.00 4.09
2309 3564 1.592223 GAGTGCCCGTAGTCAAGCT 59.408 57.895 0.00 0.00 0.00 3.74
2310 3565 1.448013 GGAGTGCCCGTAGTCAAGC 60.448 63.158 0.00 0.00 0.00 4.01
2311 3566 0.173708 GAGGAGTGCCCGTAGTCAAG 59.826 60.000 0.00 0.00 40.87 3.02
2312 3567 0.251653 AGAGGAGTGCCCGTAGTCAA 60.252 55.000 0.00 0.00 40.87 3.18
2313 3568 0.680280 GAGAGGAGTGCCCGTAGTCA 60.680 60.000 0.00 0.00 40.87 3.41
2314 3569 1.385756 GGAGAGGAGTGCCCGTAGTC 61.386 65.000 0.00 0.00 40.87 2.59
2315 3570 1.380112 GGAGAGGAGTGCCCGTAGT 60.380 63.158 0.00 0.00 40.87 2.73
2316 3571 0.757188 ATGGAGAGGAGTGCCCGTAG 60.757 60.000 0.00 0.00 40.87 3.51
2317 3572 1.043116 CATGGAGAGGAGTGCCCGTA 61.043 60.000 0.00 0.00 40.87 4.02
2318 3573 2.039624 ATGGAGAGGAGTGCCCGT 59.960 61.111 0.00 0.00 40.87 5.28
2319 3574 2.060383 TCATGGAGAGGAGTGCCCG 61.060 63.158 0.00 0.00 40.87 6.13
2320 3575 1.267574 TGTCATGGAGAGGAGTGCCC 61.268 60.000 0.00 0.00 33.31 5.36
2321 3576 0.107945 GTGTCATGGAGAGGAGTGCC 60.108 60.000 0.00 0.00 0.00 5.01
2322 3577 0.107945 GGTGTCATGGAGAGGAGTGC 60.108 60.000 0.00 0.00 0.00 4.40
2323 3578 1.066573 GTGGTGTCATGGAGAGGAGTG 60.067 57.143 0.00 0.00 0.00 3.51
2324 3579 1.203237 AGTGGTGTCATGGAGAGGAGT 60.203 52.381 0.00 0.00 0.00 3.85
2325 3580 1.566211 AGTGGTGTCATGGAGAGGAG 58.434 55.000 0.00 0.00 0.00 3.69
2326 3581 2.225267 TGTAGTGGTGTCATGGAGAGGA 60.225 50.000 0.00 0.00 0.00 3.71
2327 3582 2.179427 TGTAGTGGTGTCATGGAGAGG 58.821 52.381 0.00 0.00 0.00 3.69
2328 3583 3.961480 TTGTAGTGGTGTCATGGAGAG 57.039 47.619 0.00 0.00 0.00 3.20
2329 3584 4.161565 GGTATTGTAGTGGTGTCATGGAGA 59.838 45.833 0.00 0.00 0.00 3.71
2330 3585 4.442706 GGTATTGTAGTGGTGTCATGGAG 58.557 47.826 0.00 0.00 0.00 3.86
2331 3586 3.118920 CGGTATTGTAGTGGTGTCATGGA 60.119 47.826 0.00 0.00 0.00 3.41
2332 3587 3.194861 CGGTATTGTAGTGGTGTCATGG 58.805 50.000 0.00 0.00 0.00 3.66
2333 3588 2.607635 GCGGTATTGTAGTGGTGTCATG 59.392 50.000 0.00 0.00 0.00 3.07
2334 3589 2.235155 TGCGGTATTGTAGTGGTGTCAT 59.765 45.455 0.00 0.00 0.00 3.06
2335 3590 1.619332 TGCGGTATTGTAGTGGTGTCA 59.381 47.619 0.00 0.00 0.00 3.58
2336 3591 1.997606 GTGCGGTATTGTAGTGGTGTC 59.002 52.381 0.00 0.00 0.00 3.67
2337 3592 1.338389 GGTGCGGTATTGTAGTGGTGT 60.338 52.381 0.00 0.00 0.00 4.16
2338 3593 1.365699 GGTGCGGTATTGTAGTGGTG 58.634 55.000 0.00 0.00 0.00 4.17
2339 3594 0.251073 GGGTGCGGTATTGTAGTGGT 59.749 55.000 0.00 0.00 0.00 4.16
2340 3595 0.808453 CGGGTGCGGTATTGTAGTGG 60.808 60.000 0.00 0.00 0.00 4.00
2341 3596 0.808453 CCGGGTGCGGTATTGTAGTG 60.808 60.000 0.00 0.00 0.00 2.74
2342 3597 1.259840 ACCGGGTGCGGTATTGTAGT 61.260 55.000 6.32 0.00 40.96 2.73
2343 3598 0.108041 AACCGGGTGCGGTATTGTAG 60.108 55.000 6.32 0.00 42.06 2.74
2344 3599 1.134848 GTAACCGGGTGCGGTATTGTA 60.135 52.381 0.00 0.00 42.06 2.41
2345 3600 0.391528 GTAACCGGGTGCGGTATTGT 60.392 55.000 0.00 0.00 42.06 2.71
2346 3601 1.091197 GGTAACCGGGTGCGGTATTG 61.091 60.000 0.00 0.00 42.06 1.90
2347 3602 1.221566 GGTAACCGGGTGCGGTATT 59.778 57.895 0.00 0.00 42.06 1.89
2348 3603 2.902584 GGTAACCGGGTGCGGTAT 59.097 61.111 0.00 0.00 42.06 2.73
2360 3615 0.743345 GTGCCGATGTCCAGGGTAAC 60.743 60.000 0.00 0.00 0.00 2.50
2361 3616 1.195442 TGTGCCGATGTCCAGGGTAA 61.195 55.000 0.00 0.00 0.00 2.85
2362 3617 0.980754 ATGTGCCGATGTCCAGGGTA 60.981 55.000 0.00 0.00 0.00 3.69
2363 3618 2.300967 ATGTGCCGATGTCCAGGGT 61.301 57.895 0.00 0.00 0.00 4.34
2364 3619 1.820906 CATGTGCCGATGTCCAGGG 60.821 63.158 0.00 0.00 0.00 4.45
2365 3620 2.475466 GCATGTGCCGATGTCCAGG 61.475 63.158 0.00 0.00 34.31 4.45
2366 3621 3.104766 GCATGTGCCGATGTCCAG 58.895 61.111 0.00 0.00 34.31 3.86
2399 3654 2.032924 GCCAACATAATAGCACCGGAAC 59.967 50.000 9.46 0.00 0.00 3.62
2400 3655 2.294074 GCCAACATAATAGCACCGGAA 58.706 47.619 9.46 0.00 0.00 4.30
2401 3656 1.210722 TGCCAACATAATAGCACCGGA 59.789 47.619 9.46 0.00 0.00 5.14
2402 3657 1.674359 TGCCAACATAATAGCACCGG 58.326 50.000 0.00 0.00 0.00 5.28
2403 3658 3.436704 CCTATGCCAACATAATAGCACCG 59.563 47.826 0.00 0.00 38.29 4.94
2404 3659 4.398319 ACCTATGCCAACATAATAGCACC 58.602 43.478 0.00 0.00 38.29 5.01
2405 3660 6.485313 TGTAACCTATGCCAACATAATAGCAC 59.515 38.462 0.00 0.00 38.29 4.40
2406 3661 6.596621 TGTAACCTATGCCAACATAATAGCA 58.403 36.000 0.00 0.00 38.29 3.49
2407 3662 7.413000 CGATGTAACCTATGCCAACATAATAGC 60.413 40.741 0.00 0.00 38.29 2.97
2408 3663 7.602644 ACGATGTAACCTATGCCAACATAATAG 59.397 37.037 0.00 0.00 38.29 1.73
2409 3664 7.386573 CACGATGTAACCTATGCCAACATAATA 59.613 37.037 0.00 0.00 38.29 0.98
2410 3665 6.204688 CACGATGTAACCTATGCCAACATAAT 59.795 38.462 0.00 0.00 38.29 1.28
2411 3666 5.525745 CACGATGTAACCTATGCCAACATAA 59.474 40.000 0.00 0.00 38.29 1.90
2412 3667 5.053811 CACGATGTAACCTATGCCAACATA 58.946 41.667 0.00 0.00 37.74 2.29
2413 3668 3.876914 CACGATGTAACCTATGCCAACAT 59.123 43.478 0.00 0.00 40.49 2.71
2414 3669 3.266636 CACGATGTAACCTATGCCAACA 58.733 45.455 0.00 0.00 0.00 3.33
2415 3670 3.063452 CACACGATGTAACCTATGCCAAC 59.937 47.826 0.00 0.00 0.00 3.77
2416 3671 3.266636 CACACGATGTAACCTATGCCAA 58.733 45.455 0.00 0.00 0.00 4.52
2417 3672 2.235155 ACACACGATGTAACCTATGCCA 59.765 45.455 0.00 0.00 40.88 4.92
2418 3673 2.864343 GACACACGATGTAACCTATGCC 59.136 50.000 0.00 0.00 43.56 4.40
2419 3674 3.782046 AGACACACGATGTAACCTATGC 58.218 45.455 0.00 0.00 43.56 3.14
2420 3675 5.279384 GGTAGACACACGATGTAACCTATG 58.721 45.833 15.25 0.00 43.56 2.23
2421 3676 4.340381 GGGTAGACACACGATGTAACCTAT 59.660 45.833 18.81 0.00 43.56 2.57
2422 3677 3.696051 GGGTAGACACACGATGTAACCTA 59.304 47.826 18.81 7.47 43.56 3.08
2423 3678 2.494870 GGGTAGACACACGATGTAACCT 59.505 50.000 18.81 8.15 43.56 3.50
2424 3679 2.417787 GGGGTAGACACACGATGTAACC 60.418 54.545 14.65 14.65 43.56 2.85
2425 3680 2.417787 GGGGGTAGACACACGATGTAAC 60.418 54.545 0.00 0.00 43.56 2.50
2426 3681 1.826720 GGGGGTAGACACACGATGTAA 59.173 52.381 0.00 0.00 43.56 2.41
2427 3682 1.477553 GGGGGTAGACACACGATGTA 58.522 55.000 0.00 0.00 43.56 2.29
2429 3684 1.141019 CGGGGGTAGACACACGATG 59.859 63.158 0.00 0.00 0.00 3.84
2430 3685 2.718073 GCGGGGGTAGACACACGAT 61.718 63.158 11.49 0.00 0.00 3.73
2431 3686 2.482796 TAGCGGGGGTAGACACACGA 62.483 60.000 11.49 0.00 0.00 4.35
2432 3687 1.389609 ATAGCGGGGGTAGACACACG 61.390 60.000 1.20 1.20 0.00 4.49
2433 3688 1.696063 TATAGCGGGGGTAGACACAC 58.304 55.000 0.00 0.00 0.00 3.82
2434 3689 2.688902 ATATAGCGGGGGTAGACACA 57.311 50.000 0.00 0.00 0.00 3.72
2435 3690 4.275810 TCATATATAGCGGGGGTAGACAC 58.724 47.826 0.00 0.00 0.00 3.67
2436 3691 4.228895 TCTCATATATAGCGGGGGTAGACA 59.771 45.833 0.00 0.00 0.00 3.41
2437 3692 4.789807 TCTCATATATAGCGGGGGTAGAC 58.210 47.826 0.00 0.00 0.00 2.59
2438 3693 4.725304 TCTCTCATATATAGCGGGGGTAGA 59.275 45.833 0.00 0.00 0.00 2.59
2439 3694 4.822896 GTCTCTCATATATAGCGGGGGTAG 59.177 50.000 0.00 0.00 0.00 3.18
2440 3695 4.386088 GGTCTCTCATATATAGCGGGGGTA 60.386 50.000 0.00 0.00 0.00 3.69
2441 3696 3.627747 GGTCTCTCATATATAGCGGGGGT 60.628 52.174 0.00 0.00 0.00 4.95
2442 3697 2.959707 GGTCTCTCATATATAGCGGGGG 59.040 54.545 0.00 0.00 0.00 5.40
2443 3698 3.904717 AGGTCTCTCATATATAGCGGGG 58.095 50.000 0.00 0.00 0.00 5.73
2444 3699 5.067273 CCTAGGTCTCTCATATATAGCGGG 58.933 50.000 0.00 0.00 0.00 6.13
2445 3700 5.931294 TCCTAGGTCTCTCATATATAGCGG 58.069 45.833 9.08 0.00 0.00 5.52
2446 3701 8.151596 TGTATCCTAGGTCTCTCATATATAGCG 58.848 40.741 9.08 0.00 0.00 4.26
2447 3702 9.854668 TTGTATCCTAGGTCTCTCATATATAGC 57.145 37.037 9.08 0.00 0.00 2.97
2450 3705 9.693739 CACTTGTATCCTAGGTCTCTCATATAT 57.306 37.037 9.08 0.00 0.00 0.86
2451 3706 8.670490 ACACTTGTATCCTAGGTCTCTCATATA 58.330 37.037 9.08 0.00 0.00 0.86
2452 3707 7.531317 ACACTTGTATCCTAGGTCTCTCATAT 58.469 38.462 9.08 0.00 0.00 1.78
2453 3708 6.912426 ACACTTGTATCCTAGGTCTCTCATA 58.088 40.000 9.08 0.00 0.00 2.15
2454 3709 5.772004 ACACTTGTATCCTAGGTCTCTCAT 58.228 41.667 9.08 0.00 0.00 2.90
2455 3710 5.194432 GACACTTGTATCCTAGGTCTCTCA 58.806 45.833 9.08 0.10 0.00 3.27
2456 3711 4.581409 GGACACTTGTATCCTAGGTCTCTC 59.419 50.000 9.08 0.00 31.75 3.20
2457 3712 4.230964 AGGACACTTGTATCCTAGGTCTCT 59.769 45.833 9.08 0.00 43.85 3.10
2458 3713 4.538738 AGGACACTTGTATCCTAGGTCTC 58.461 47.826 9.08 0.96 43.85 3.36
2459 3714 4.611564 AGGACACTTGTATCCTAGGTCT 57.388 45.455 9.08 0.00 43.85 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.