Multiple sequence alignment - TraesCS5A01G068100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G068100 chr5A 100.000 3575 0 0 1 3575 76490222 76493796 0.000000e+00 6602.0
1 TraesCS5A01G068100 chr5A 98.615 2672 34 1 752 3423 75338337 75341005 0.000000e+00 4726.0
2 TraesCS5A01G068100 chr5A 99.141 2213 19 0 1363 3575 76544777 76546989 0.000000e+00 3982.0
3 TraesCS5A01G068100 chr5A 99.051 2213 21 0 1363 3575 76518015 76520227 0.000000e+00 3971.0
4 TraesCS5A01G068100 chr5A 91.469 633 38 7 2581 3198 75349344 75349975 0.000000e+00 856.0
5 TraesCS5A01G068100 chr5A 73.344 634 130 29 1046 1658 24798518 24797903 7.830000e-47 198.0
6 TraesCS5A01G068100 chr5A 95.652 115 5 0 3443 3557 75349233 75349347 6.090000e-43 185.0
7 TraesCS5A01G068100 chr5A 88.119 101 12 0 2034 2134 75050057 75050157 1.740000e-23 121.0
8 TraesCS5A01G068100 chr5D 96.879 2627 69 6 801 3420 80299527 80302147 0.000000e+00 4385.0
9 TraesCS5A01G068100 chr5D 93.506 154 8 2 3422 3575 80303367 80303518 9.980000e-56 228.0
10 TraesCS5A01G068100 chr5D 73.176 425 83 22 2067 2473 76754293 76753882 1.350000e-24 124.0
11 TraesCS5A01G068100 chr5D 72.941 425 84 22 2067 2473 76690049 76689638 6.270000e-23 119.0
12 TraesCS5A01G068100 chr5B 96.029 2594 74 4 752 3332 88858910 88861487 0.000000e+00 4193.0
13 TraesCS5A01G068100 chr5B 96.000 150 6 0 3426 3575 88863785 88863934 9.910000e-61 244.0
14 TraesCS5A01G068100 chr5B 97.000 100 3 0 3324 3423 88862645 88862744 6.140000e-38 169.0
15 TraesCS5A01G068100 chr5B 89.216 102 9 2 2034 2134 88781319 88781419 3.750000e-25 126.0
16 TraesCS5A01G068100 chr1A 94.485 689 31 5 1 682 507745815 507745127 0.000000e+00 1055.0
17 TraesCS5A01G068100 chr1A 94.075 692 29 5 1 682 585366760 585366071 0.000000e+00 1040.0
18 TraesCS5A01G068100 chr7D 86.572 283 37 1 80 361 528582177 528582459 9.640000e-81 311.0
19 TraesCS5A01G068100 chr7D 90.230 174 16 1 323 495 401181074 401180901 3.590000e-55 226.0
20 TraesCS5A01G068100 chr7D 87.097 155 20 0 1075 1229 461400669 461400515 3.670000e-40 176.0
21 TraesCS5A01G068100 chr7D 90.385 52 3 2 321 371 110369062 110369012 2.300000e-07 67.6
22 TraesCS5A01G068100 chr4B 88.400 250 23 5 80 327 35525882 35526127 2.700000e-76 296.0
23 TraesCS5A01G068100 chr4D 88.000 250 24 5 80 327 23425629 23425874 1.260000e-74 291.0
24 TraesCS5A01G068100 chr4A 88.095 252 20 7 80 327 578533936 578533691 1.260000e-74 291.0
25 TraesCS5A01G068100 chr6B 86.275 204 18 3 332 525 29425932 29426135 2.800000e-51 213.0
26 TraesCS5A01G068100 chr7B 88.889 144 16 0 1071 1214 483890837 483890694 1.020000e-40 178.0
27 TraesCS5A01G068100 chr1B 86.429 140 19 0 1071 1210 628031348 628031487 1.720000e-33 154.0
28 TraesCS5A01G068100 chr2A 84.247 146 23 0 3428 3573 434957825 434957680 3.720000e-30 143.0
29 TraesCS5A01G068100 chr3B 83.007 153 26 0 3423 3575 207050511 207050663 4.810000e-29 139.0
30 TraesCS5A01G068100 chr2D 83.562 146 24 0 3428 3573 328459579 328459434 1.730000e-28 137.0
31 TraesCS5A01G068100 chr3A 90.000 80 8 0 1 80 552430585 552430664 1.760000e-18 104.0
32 TraesCS5A01G068100 chr7A 94.545 55 2 1 339 392 8735391 8735337 2.290000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G068100 chr5A 76490222 76493796 3574 False 6602.000000 6602 100.0000 1 3575 1 chr5A.!!$F3 3574
1 TraesCS5A01G068100 chr5A 75338337 75341005 2668 False 4726.000000 4726 98.6150 752 3423 1 chr5A.!!$F2 2671
2 TraesCS5A01G068100 chr5A 76544777 76546989 2212 False 3982.000000 3982 99.1410 1363 3575 1 chr5A.!!$F5 2212
3 TraesCS5A01G068100 chr5A 76518015 76520227 2212 False 3971.000000 3971 99.0510 1363 3575 1 chr5A.!!$F4 2212
4 TraesCS5A01G068100 chr5A 75349233 75349975 742 False 520.500000 856 93.5605 2581 3557 2 chr5A.!!$F6 976
5 TraesCS5A01G068100 chr5D 80299527 80303518 3991 False 2306.500000 4385 95.1925 801 3575 2 chr5D.!!$F1 2774
6 TraesCS5A01G068100 chr5B 88858910 88863934 5024 False 1535.333333 4193 96.3430 752 3575 3 chr5B.!!$F2 2823
7 TraesCS5A01G068100 chr1A 507745127 507745815 688 True 1055.000000 1055 94.4850 1 682 1 chr1A.!!$R1 681
8 TraesCS5A01G068100 chr1A 585366071 585366760 689 True 1040.000000 1040 94.0750 1 682 1 chr1A.!!$R2 681

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
161 162 0.035056 AGAACGGAGAAGCCATTGGG 60.035 55.0 4.53 0.0 35.94 4.12 F
546 547 0.037326 CTGCCGCAACCTAGTTGAGA 60.037 55.0 11.50 0.0 45.28 3.27 F
748 749 0.108992 AAAAGGACGTGCGCTATCGA 60.109 50.0 21.71 0.0 38.10 3.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1665 1705 1.138464 TCTCTCACAGCCATGCATCTC 59.862 52.381 0.00 0.00 0.00 2.75 R
2048 2088 7.558161 TCCAAACTAAGATTGTGCATATCAG 57.442 36.000 12.56 6.22 0.00 2.90 R
2629 2669 4.589216 AGGTACTACAAACACGCTAACA 57.411 40.909 0.00 0.00 36.02 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 120 1.215382 CAGAAGCGTGGGATGTCGA 59.785 57.895 0.00 0.00 0.00 4.20
120 121 0.179100 CAGAAGCGTGGGATGTCGAT 60.179 55.000 0.00 0.00 0.00 3.59
121 122 0.179100 AGAAGCGTGGGATGTCGATG 60.179 55.000 0.00 0.00 0.00 3.84
122 123 0.460284 GAAGCGTGGGATGTCGATGT 60.460 55.000 0.00 0.00 0.00 3.06
123 124 0.460284 AAGCGTGGGATGTCGATGTC 60.460 55.000 0.00 0.00 0.00 3.06
124 125 2.230940 GCGTGGGATGTCGATGTCG 61.231 63.158 0.00 0.00 41.45 4.35
125 126 2.230940 CGTGGGATGTCGATGTCGC 61.231 63.158 9.25 9.25 39.60 5.19
126 127 2.104132 TGGGATGTCGATGTCGCG 59.896 61.111 0.00 0.00 39.60 5.87
127 128 2.411504 TGGGATGTCGATGTCGCGA 61.412 57.895 3.71 3.71 39.60 5.87
143 144 4.154347 GACCTCGCAGGCCTGGAG 62.154 72.222 33.46 31.40 39.63 3.86
144 145 4.704103 ACCTCGCAGGCCTGGAGA 62.704 66.667 34.78 22.85 39.63 3.71
145 146 3.393970 CCTCGCAGGCCTGGAGAA 61.394 66.667 34.78 13.82 32.96 2.87
146 147 2.125350 CTCGCAGGCCTGGAGAAC 60.125 66.667 31.91 18.06 32.96 3.01
147 148 3.997064 CTCGCAGGCCTGGAGAACG 62.997 68.421 31.91 26.47 32.96 3.95
149 150 3.706373 GCAGGCCTGGAGAACGGA 61.706 66.667 33.46 0.00 0.00 4.69
150 151 2.581354 CAGGCCTGGAGAACGGAG 59.419 66.667 26.14 0.00 0.00 4.63
151 152 1.984570 CAGGCCTGGAGAACGGAGA 60.985 63.158 26.14 0.00 0.00 3.71
152 153 1.229209 AGGCCTGGAGAACGGAGAA 60.229 57.895 3.11 0.00 0.00 2.87
153 154 1.219393 GGCCTGGAGAACGGAGAAG 59.781 63.158 0.00 0.00 0.00 2.85
154 155 1.448717 GCCTGGAGAACGGAGAAGC 60.449 63.158 0.00 0.00 0.00 3.86
155 156 1.219393 CCTGGAGAACGGAGAAGCC 59.781 63.158 0.00 0.00 0.00 4.35
156 157 1.544825 CCTGGAGAACGGAGAAGCCA 61.545 60.000 0.00 0.00 35.94 4.75
157 158 0.539051 CTGGAGAACGGAGAAGCCAT 59.461 55.000 0.00 0.00 35.94 4.40
158 159 0.984230 TGGAGAACGGAGAAGCCATT 59.016 50.000 0.00 0.00 35.94 3.16
159 160 1.339055 TGGAGAACGGAGAAGCCATTG 60.339 52.381 0.00 0.00 35.94 2.82
160 161 1.373570 GAGAACGGAGAAGCCATTGG 58.626 55.000 0.00 0.00 35.94 3.16
161 162 0.035056 AGAACGGAGAAGCCATTGGG 60.035 55.000 4.53 0.00 35.94 4.12
162 163 1.000896 AACGGAGAAGCCATTGGGG 60.001 57.895 4.53 0.00 40.85 4.96
163 164 1.497309 AACGGAGAAGCCATTGGGGA 61.497 55.000 4.53 0.00 40.01 4.81
164 165 1.281925 ACGGAGAAGCCATTGGGGAT 61.282 55.000 4.53 0.00 40.01 3.85
165 166 0.536006 CGGAGAAGCCATTGGGGATC 60.536 60.000 4.53 0.00 40.01 3.36
166 167 0.178978 GGAGAAGCCATTGGGGATCC 60.179 60.000 1.92 1.92 40.01 3.36
167 168 0.536006 GAGAAGCCATTGGGGATCCG 60.536 60.000 5.45 0.00 40.01 4.18
168 169 2.123726 AAGCCATTGGGGATCCGC 60.124 61.111 21.55 21.55 40.01 5.54
169 170 2.909457 GAAGCCATTGGGGATCCGCA 62.909 60.000 26.54 26.54 40.01 5.69
170 171 3.219198 GCCATTGGGGATCCGCAC 61.219 66.667 29.67 15.35 40.01 5.34
171 172 2.901840 CCATTGGGGATCCGCACG 60.902 66.667 29.67 22.32 40.01 5.34
172 173 2.901840 CATTGGGGATCCGCACGG 60.902 66.667 29.67 20.29 38.61 4.94
173 174 3.407967 ATTGGGGATCCGCACGGT 61.408 61.111 29.67 16.33 38.61 4.83
174 175 2.067605 ATTGGGGATCCGCACGGTA 61.068 57.895 29.67 16.49 38.61 4.02
175 176 1.415672 ATTGGGGATCCGCACGGTAT 61.416 55.000 29.67 17.99 38.61 2.73
176 177 2.030562 GGGGATCCGCACGGTATG 59.969 66.667 23.21 0.00 36.47 2.39
177 178 2.030562 GGGATCCGCACGGTATGG 59.969 66.667 9.23 0.00 36.47 2.74
178 179 2.665185 GGATCCGCACGGTATGGC 60.665 66.667 9.23 0.00 36.47 4.40
179 180 2.665185 GATCCGCACGGTATGGCC 60.665 66.667 9.23 0.00 36.47 5.36
188 189 2.491152 GGTATGGCCGTCGACGAA 59.509 61.111 37.65 22.76 43.02 3.85
189 190 1.875364 GGTATGGCCGTCGACGAAC 60.875 63.158 37.65 27.81 43.02 3.95
190 191 1.153978 GTATGGCCGTCGACGAACA 60.154 57.895 37.65 31.91 43.02 3.18
191 192 1.153978 TATGGCCGTCGACGAACAC 60.154 57.895 37.65 23.12 43.02 3.32
192 193 2.546645 TATGGCCGTCGACGAACACC 62.547 60.000 37.65 29.26 43.02 4.16
193 194 4.353437 GGCCGTCGACGAACACCT 62.353 66.667 37.65 0.00 43.02 4.00
194 195 2.804090 GCCGTCGACGAACACCTC 60.804 66.667 37.65 13.71 43.02 3.85
203 204 3.173240 GAACACCTCGAGCGCGTC 61.173 66.667 10.30 3.06 38.98 5.19
204 205 4.719369 AACACCTCGAGCGCGTCC 62.719 66.667 10.30 0.00 38.98 4.79
206 207 4.838486 CACCTCGAGCGCGTCCTC 62.838 72.222 10.30 5.75 38.98 3.71
226 227 4.467084 GGTTGGGCGGCAGATCGA 62.467 66.667 12.47 0.00 0.00 3.59
227 228 3.195698 GTTGGGCGGCAGATCGAC 61.196 66.667 12.47 0.00 37.46 4.20
312 313 4.154347 CTGGCCTCCGGTGAGCTC 62.154 72.222 6.82 6.82 37.29 4.09
314 315 4.459089 GGCCTCCGGTGAGCTCAC 62.459 72.222 34.25 34.25 45.72 3.51
337 338 3.764466 CGCTCGAGCTGGGAACCT 61.764 66.667 32.88 0.00 42.52 3.50
348 349 3.404773 GGAACCTGGGAGGAGGTG 58.595 66.667 0.00 0.00 46.29 4.00
349 350 1.229529 GGAACCTGGGAGGAGGTGA 60.230 63.158 0.00 0.00 46.29 4.02
350 351 1.268283 GGAACCTGGGAGGAGGTGAG 61.268 65.000 0.00 0.00 46.29 3.51
351 352 1.229658 AACCTGGGAGGAGGTGAGG 60.230 63.158 0.00 0.00 46.29 3.86
352 353 1.751143 AACCTGGGAGGAGGTGAGGA 61.751 60.000 0.00 0.00 46.29 3.71
353 354 1.382420 CCTGGGAGGAGGTGAGGAG 60.382 68.421 0.00 0.00 37.67 3.69
354 355 1.700368 CTGGGAGGAGGTGAGGAGA 59.300 63.158 0.00 0.00 0.00 3.71
355 356 0.396974 CTGGGAGGAGGTGAGGAGAG 60.397 65.000 0.00 0.00 0.00 3.20
356 357 1.075600 GGGAGGAGGTGAGGAGAGG 60.076 68.421 0.00 0.00 0.00 3.69
357 358 1.700985 GGAGGAGGTGAGGAGAGGT 59.299 63.158 0.00 0.00 0.00 3.85
358 359 0.686112 GGAGGAGGTGAGGAGAGGTG 60.686 65.000 0.00 0.00 0.00 4.00
359 360 0.686112 GAGGAGGTGAGGAGAGGTGG 60.686 65.000 0.00 0.00 0.00 4.61
360 361 2.363172 GGAGGTGAGGAGAGGTGGC 61.363 68.421 0.00 0.00 0.00 5.01
361 362 1.610673 GAGGTGAGGAGAGGTGGCA 60.611 63.158 0.00 0.00 0.00 4.92
362 363 1.611851 AGGTGAGGAGAGGTGGCAG 60.612 63.158 0.00 0.00 0.00 4.85
363 364 2.267324 GTGAGGAGAGGTGGCAGC 59.733 66.667 9.02 9.02 0.00 5.25
364 365 3.005539 TGAGGAGAGGTGGCAGCC 61.006 66.667 13.95 3.66 0.00 4.85
365 366 2.686835 GAGGAGAGGTGGCAGCCT 60.687 66.667 14.15 10.68 42.53 4.58
371 372 4.345286 AGGTGGCAGCCTCTCCCT 62.345 66.667 14.15 9.70 32.39 4.20
372 373 3.791586 GGTGGCAGCCTCTCCCTC 61.792 72.222 14.15 0.00 0.00 4.30
373 374 4.154347 GTGGCAGCCTCTCCCTCG 62.154 72.222 14.15 0.00 0.00 4.63
377 378 3.847602 CAGCCTCTCCCTCGCTGG 61.848 72.222 0.33 0.00 45.00 4.85
405 406 4.643387 GGACACCCGCCTTGCTGT 62.643 66.667 0.00 0.00 0.00 4.40
406 407 3.050275 GACACCCGCCTTGCTGTC 61.050 66.667 0.00 0.00 0.00 3.51
407 408 4.988598 ACACCCGCCTTGCTGTCG 62.989 66.667 0.00 0.00 0.00 4.35
413 414 4.785453 GCCTTGCTGTCGGGGGAG 62.785 72.222 0.00 0.00 0.00 4.30
414 415 4.101448 CCTTGCTGTCGGGGGAGG 62.101 72.222 0.00 0.00 0.00 4.30
415 416 3.003173 CTTGCTGTCGGGGGAGGA 61.003 66.667 0.00 0.00 0.00 3.71
416 417 3.003173 TTGCTGTCGGGGGAGGAG 61.003 66.667 0.00 0.00 0.00 3.69
419 420 3.465403 CTGTCGGGGGAGGAGCAG 61.465 72.222 0.00 0.00 0.00 4.24
433 434 4.096003 GCAGCACCGCCCTTCCTA 62.096 66.667 0.00 0.00 0.00 2.94
434 435 2.911143 CAGCACCGCCCTTCCTAT 59.089 61.111 0.00 0.00 0.00 2.57
435 436 1.227674 CAGCACCGCCCTTCCTATC 60.228 63.158 0.00 0.00 0.00 2.08
436 437 1.689233 AGCACCGCCCTTCCTATCA 60.689 57.895 0.00 0.00 0.00 2.15
437 438 1.227674 GCACCGCCCTTCCTATCAG 60.228 63.158 0.00 0.00 0.00 2.90
438 439 1.686325 GCACCGCCCTTCCTATCAGA 61.686 60.000 0.00 0.00 0.00 3.27
439 440 1.051812 CACCGCCCTTCCTATCAGAT 58.948 55.000 0.00 0.00 0.00 2.90
440 441 1.417890 CACCGCCCTTCCTATCAGATT 59.582 52.381 0.00 0.00 0.00 2.40
441 442 2.632996 CACCGCCCTTCCTATCAGATTA 59.367 50.000 0.00 0.00 0.00 1.75
442 443 2.900546 ACCGCCCTTCCTATCAGATTAG 59.099 50.000 0.00 0.00 0.00 1.73
443 444 2.354203 CCGCCCTTCCTATCAGATTAGC 60.354 54.545 0.00 0.00 0.00 3.09
444 445 2.354203 CGCCCTTCCTATCAGATTAGCC 60.354 54.545 0.00 0.00 0.00 3.93
445 446 2.639839 GCCCTTCCTATCAGATTAGCCA 59.360 50.000 0.00 0.00 0.00 4.75
446 447 3.558109 GCCCTTCCTATCAGATTAGCCAC 60.558 52.174 0.00 0.00 0.00 5.01
447 448 3.648067 CCCTTCCTATCAGATTAGCCACA 59.352 47.826 0.00 0.00 0.00 4.17
448 449 4.103153 CCCTTCCTATCAGATTAGCCACAA 59.897 45.833 0.00 0.00 0.00 3.33
449 450 5.397899 CCCTTCCTATCAGATTAGCCACAAA 60.398 44.000 0.00 0.00 0.00 2.83
450 451 6.122277 CCTTCCTATCAGATTAGCCACAAAA 58.878 40.000 0.00 0.00 0.00 2.44
451 452 6.261826 CCTTCCTATCAGATTAGCCACAAAAG 59.738 42.308 0.00 0.00 0.00 2.27
452 453 6.313519 TCCTATCAGATTAGCCACAAAAGT 57.686 37.500 0.00 0.00 0.00 2.66
453 454 6.115446 TCCTATCAGATTAGCCACAAAAGTG 58.885 40.000 0.00 0.00 0.00 3.16
454 455 6.070251 TCCTATCAGATTAGCCACAAAAGTGA 60.070 38.462 0.00 0.00 0.00 3.41
455 456 6.599244 CCTATCAGATTAGCCACAAAAGTGAA 59.401 38.462 0.00 0.00 0.00 3.18
456 457 5.947228 TCAGATTAGCCACAAAAGTGAAG 57.053 39.130 0.00 0.00 0.00 3.02
457 458 5.620206 TCAGATTAGCCACAAAAGTGAAGA 58.380 37.500 0.00 0.00 0.00 2.87
458 459 5.470098 TCAGATTAGCCACAAAAGTGAAGAC 59.530 40.000 0.00 0.00 0.00 3.01
459 460 4.762251 AGATTAGCCACAAAAGTGAAGACC 59.238 41.667 0.00 0.00 0.00 3.85
460 461 1.692411 AGCCACAAAAGTGAAGACCC 58.308 50.000 0.00 0.00 0.00 4.46
461 462 1.215423 AGCCACAAAAGTGAAGACCCT 59.785 47.619 0.00 0.00 0.00 4.34
462 463 1.338020 GCCACAAAAGTGAAGACCCTG 59.662 52.381 0.00 0.00 0.00 4.45
463 464 2.930950 CCACAAAAGTGAAGACCCTGA 58.069 47.619 0.00 0.00 0.00 3.86
464 465 2.880890 CCACAAAAGTGAAGACCCTGAG 59.119 50.000 0.00 0.00 0.00 3.35
465 466 2.880890 CACAAAAGTGAAGACCCTGAGG 59.119 50.000 0.00 0.00 40.04 3.86
466 467 2.777692 ACAAAAGTGAAGACCCTGAGGA 59.222 45.455 0.00 0.00 36.73 3.71
467 468 3.181450 ACAAAAGTGAAGACCCTGAGGAG 60.181 47.826 0.00 0.00 36.73 3.69
468 469 2.704190 AAGTGAAGACCCTGAGGAGA 57.296 50.000 0.00 0.00 36.73 3.71
469 470 2.704190 AGTGAAGACCCTGAGGAGAA 57.296 50.000 0.00 0.00 36.73 2.87
470 471 2.534990 AGTGAAGACCCTGAGGAGAAG 58.465 52.381 0.00 0.00 36.73 2.85
471 472 1.066502 GTGAAGACCCTGAGGAGAAGC 60.067 57.143 0.00 0.00 36.73 3.86
472 473 1.270907 GAAGACCCTGAGGAGAAGCA 58.729 55.000 0.00 0.00 36.73 3.91
473 474 1.206849 GAAGACCCTGAGGAGAAGCAG 59.793 57.143 0.00 0.00 36.73 4.24
476 477 2.588989 CCTGAGGAGAAGCAGGCC 59.411 66.667 0.00 0.00 44.53 5.19
477 478 1.994507 CCTGAGGAGAAGCAGGCCT 60.995 63.158 0.00 0.00 44.53 5.19
478 479 1.560866 CCTGAGGAGAAGCAGGCCTT 61.561 60.000 0.00 0.00 44.53 4.35
479 480 0.327591 CTGAGGAGAAGCAGGCCTTT 59.672 55.000 0.00 0.00 32.78 3.11
480 481 0.326264 TGAGGAGAAGCAGGCCTTTC 59.674 55.000 0.00 5.64 32.78 2.62
481 482 0.617935 GAGGAGAAGCAGGCCTTTCT 59.382 55.000 17.88 17.88 32.78 2.52
482 483 0.617935 AGGAGAAGCAGGCCTTTCTC 59.382 55.000 28.46 28.46 32.78 2.87
483 484 0.393673 GGAGAAGCAGGCCTTTCTCC 60.394 60.000 34.94 34.94 38.98 3.71
484 485 0.326264 GAGAAGCAGGCCTTTCTCCA 59.674 55.000 27.01 0.00 32.78 3.86
485 486 0.327591 AGAAGCAGGCCTTTCTCCAG 59.672 55.000 13.09 0.00 32.78 3.86
486 487 0.037447 GAAGCAGGCCTTTCTCCAGT 59.963 55.000 0.00 0.00 32.78 4.00
487 488 0.037447 AAGCAGGCCTTTCTCCAGTC 59.963 55.000 0.00 0.00 0.00 3.51
488 489 1.743252 GCAGGCCTTTCTCCAGTCG 60.743 63.158 0.00 0.00 0.00 4.18
489 490 1.078848 CAGGCCTTTCTCCAGTCGG 60.079 63.158 0.00 0.00 0.00 4.79
490 491 2.436824 GGCCTTTCTCCAGTCGGC 60.437 66.667 0.00 0.00 39.98 5.54
491 492 2.347490 GCCTTTCTCCAGTCGGCA 59.653 61.111 0.00 0.00 40.41 5.69
492 493 1.743252 GCCTTTCTCCAGTCGGCAG 60.743 63.158 0.00 0.00 40.41 4.85
493 494 1.743252 CCTTTCTCCAGTCGGCAGC 60.743 63.158 0.00 0.00 0.00 5.25
494 495 2.048222 TTTCTCCAGTCGGCAGCG 60.048 61.111 0.00 0.00 0.00 5.18
495 496 4.742201 TTCTCCAGTCGGCAGCGC 62.742 66.667 0.00 0.00 0.00 5.92
541 542 4.760047 CGGCTGCCGCAACCTAGT 62.760 66.667 29.58 0.00 41.17 2.57
542 543 2.359975 GGCTGCCGCAACCTAGTT 60.360 61.111 1.35 0.00 38.10 2.24
543 544 2.690778 GGCTGCCGCAACCTAGTTG 61.691 63.158 1.35 3.09 45.24 3.16
544 545 1.671054 GCTGCCGCAACCTAGTTGA 60.671 57.895 11.50 0.00 45.28 3.18
545 546 1.639298 GCTGCCGCAACCTAGTTGAG 61.639 60.000 11.50 7.85 45.28 3.02
546 547 0.037326 CTGCCGCAACCTAGTTGAGA 60.037 55.000 11.50 0.00 45.28 3.27
547 548 0.037326 TGCCGCAACCTAGTTGAGAG 60.037 55.000 11.50 4.05 45.28 3.20
548 549 0.741221 GCCGCAACCTAGTTGAGAGG 60.741 60.000 11.50 10.98 45.28 3.69
549 550 0.895530 CCGCAACCTAGTTGAGAGGA 59.104 55.000 11.50 0.00 45.28 3.71
550 551 1.134965 CCGCAACCTAGTTGAGAGGAG 60.135 57.143 11.50 0.00 45.28 3.69
551 552 1.134965 CGCAACCTAGTTGAGAGGAGG 60.135 57.143 11.50 0.00 45.28 4.30
552 553 2.180276 GCAACCTAGTTGAGAGGAGGA 58.820 52.381 11.50 0.00 45.28 3.71
553 554 2.567615 GCAACCTAGTTGAGAGGAGGAA 59.432 50.000 11.50 0.00 45.28 3.36
554 555 3.008049 GCAACCTAGTTGAGAGGAGGAAA 59.992 47.826 11.50 0.00 45.28 3.13
555 556 4.505039 GCAACCTAGTTGAGAGGAGGAAAA 60.505 45.833 11.50 0.00 45.28 2.29
556 557 5.621193 CAACCTAGTTGAGAGGAGGAAAAA 58.379 41.667 1.14 0.00 45.28 1.94
557 558 5.230323 ACCTAGTTGAGAGGAGGAAAAAC 57.770 43.478 0.00 0.00 37.53 2.43
558 559 4.246458 CCTAGTTGAGAGGAGGAAAAACG 58.754 47.826 0.00 0.00 35.99 3.60
559 560 4.021368 CCTAGTTGAGAGGAGGAAAAACGA 60.021 45.833 0.00 0.00 35.99 3.85
560 561 4.417426 AGTTGAGAGGAGGAAAAACGAA 57.583 40.909 0.00 0.00 0.00 3.85
561 562 4.777463 AGTTGAGAGGAGGAAAAACGAAA 58.223 39.130 0.00 0.00 0.00 3.46
562 563 4.816925 AGTTGAGAGGAGGAAAAACGAAAG 59.183 41.667 0.00 0.00 0.00 2.62
563 564 4.682778 TGAGAGGAGGAAAAACGAAAGA 57.317 40.909 0.00 0.00 0.00 2.52
564 565 4.632153 TGAGAGGAGGAAAAACGAAAGAG 58.368 43.478 0.00 0.00 0.00 2.85
565 566 4.344102 TGAGAGGAGGAAAAACGAAAGAGA 59.656 41.667 0.00 0.00 0.00 3.10
566 567 4.633175 AGAGGAGGAAAAACGAAAGAGAC 58.367 43.478 0.00 0.00 0.00 3.36
567 568 4.101119 AGAGGAGGAAAAACGAAAGAGACA 59.899 41.667 0.00 0.00 0.00 3.41
568 569 4.777463 AGGAGGAAAAACGAAAGAGACAA 58.223 39.130 0.00 0.00 0.00 3.18
569 570 5.190677 AGGAGGAAAAACGAAAGAGACAAA 58.809 37.500 0.00 0.00 0.00 2.83
570 571 5.650703 AGGAGGAAAAACGAAAGAGACAAAA 59.349 36.000 0.00 0.00 0.00 2.44
571 572 6.152154 AGGAGGAAAAACGAAAGAGACAAAAA 59.848 34.615 0.00 0.00 0.00 1.94
572 573 6.472486 GGAGGAAAAACGAAAGAGACAAAAAG 59.528 38.462 0.00 0.00 0.00 2.27
573 574 7.153217 AGGAAAAACGAAAGAGACAAAAAGA 57.847 32.000 0.00 0.00 0.00 2.52
574 575 7.027760 AGGAAAAACGAAAGAGACAAAAAGAC 58.972 34.615 0.00 0.00 0.00 3.01
575 576 6.804783 GGAAAAACGAAAGAGACAAAAAGACA 59.195 34.615 0.00 0.00 0.00 3.41
576 577 7.327518 GGAAAAACGAAAGAGACAAAAAGACAA 59.672 33.333 0.00 0.00 0.00 3.18
577 578 8.582433 AAAAACGAAAGAGACAAAAAGACAAA 57.418 26.923 0.00 0.00 0.00 2.83
578 579 8.582433 AAAACGAAAGAGACAAAAAGACAAAA 57.418 26.923 0.00 0.00 0.00 2.44
579 580 7.796958 AACGAAAGAGACAAAAAGACAAAAG 57.203 32.000 0.00 0.00 0.00 2.27
580 581 7.141100 ACGAAAGAGACAAAAAGACAAAAGA 57.859 32.000 0.00 0.00 0.00 2.52
581 582 7.244192 ACGAAAGAGACAAAAAGACAAAAGAG 58.756 34.615 0.00 0.00 0.00 2.85
582 583 6.688813 CGAAAGAGACAAAAAGACAAAAGAGG 59.311 38.462 0.00 0.00 0.00 3.69
583 584 7.414098 CGAAAGAGACAAAAAGACAAAAGAGGA 60.414 37.037 0.00 0.00 0.00 3.71
584 585 7.703058 AAGAGACAAAAAGACAAAAGAGGAA 57.297 32.000 0.00 0.00 0.00 3.36
585 586 7.326968 AGAGACAAAAAGACAAAAGAGGAAG 57.673 36.000 0.00 0.00 0.00 3.46
586 587 7.112779 AGAGACAAAAAGACAAAAGAGGAAGA 58.887 34.615 0.00 0.00 0.00 2.87
587 588 7.611855 AGAGACAAAAAGACAAAAGAGGAAGAA 59.388 33.333 0.00 0.00 0.00 2.52
588 589 7.766283 AGACAAAAAGACAAAAGAGGAAGAAG 58.234 34.615 0.00 0.00 0.00 2.85
589 590 6.333416 ACAAAAAGACAAAAGAGGAAGAAGC 58.667 36.000 0.00 0.00 0.00 3.86
590 591 4.820284 AAAGACAAAAGAGGAAGAAGCG 57.180 40.909 0.00 0.00 0.00 4.68
591 592 3.477210 AGACAAAAGAGGAAGAAGCGT 57.523 42.857 0.00 0.00 0.00 5.07
592 593 3.134458 AGACAAAAGAGGAAGAAGCGTG 58.866 45.455 0.00 0.00 0.00 5.34
593 594 2.872858 GACAAAAGAGGAAGAAGCGTGT 59.127 45.455 0.00 0.00 0.00 4.49
594 595 4.056050 GACAAAAGAGGAAGAAGCGTGTA 58.944 43.478 0.00 0.00 0.00 2.90
595 596 4.642429 ACAAAAGAGGAAGAAGCGTGTAT 58.358 39.130 0.00 0.00 0.00 2.29
596 597 4.452455 ACAAAAGAGGAAGAAGCGTGTATG 59.548 41.667 0.00 0.00 0.00 2.39
597 598 2.969628 AGAGGAAGAAGCGTGTATGG 57.030 50.000 0.00 0.00 0.00 2.74
598 599 1.482593 AGAGGAAGAAGCGTGTATGGG 59.517 52.381 0.00 0.00 0.00 4.00
599 600 0.541863 AGGAAGAAGCGTGTATGGGG 59.458 55.000 0.00 0.00 0.00 4.96
600 601 0.539986 GGAAGAAGCGTGTATGGGGA 59.460 55.000 0.00 0.00 0.00 4.81
601 602 1.473434 GGAAGAAGCGTGTATGGGGAG 60.473 57.143 0.00 0.00 0.00 4.30
602 603 1.480954 GAAGAAGCGTGTATGGGGAGA 59.519 52.381 0.00 0.00 0.00 3.71
603 604 1.568504 AGAAGCGTGTATGGGGAGAA 58.431 50.000 0.00 0.00 0.00 2.87
604 605 1.906574 AGAAGCGTGTATGGGGAGAAA 59.093 47.619 0.00 0.00 0.00 2.52
605 606 2.304761 AGAAGCGTGTATGGGGAGAAAA 59.695 45.455 0.00 0.00 0.00 2.29
606 607 2.403252 AGCGTGTATGGGGAGAAAAG 57.597 50.000 0.00 0.00 0.00 2.27
607 608 0.733150 GCGTGTATGGGGAGAAAAGC 59.267 55.000 0.00 0.00 0.00 3.51
608 609 1.379527 CGTGTATGGGGAGAAAAGCC 58.620 55.000 0.00 0.00 0.00 4.35
609 610 1.065418 CGTGTATGGGGAGAAAAGCCT 60.065 52.381 0.00 0.00 0.00 4.58
610 611 2.169769 CGTGTATGGGGAGAAAAGCCTA 59.830 50.000 0.00 0.00 0.00 3.93
611 612 3.542648 GTGTATGGGGAGAAAAGCCTAC 58.457 50.000 0.00 0.00 0.00 3.18
612 613 2.508300 TGTATGGGGAGAAAAGCCTACC 59.492 50.000 0.00 0.00 36.38 3.18
613 614 1.681229 ATGGGGAGAAAAGCCTACCA 58.319 50.000 0.00 0.00 38.99 3.25
614 615 0.991920 TGGGGAGAAAAGCCTACCAG 59.008 55.000 0.00 0.00 38.99 4.00
615 616 0.394488 GGGGAGAAAAGCCTACCAGC 60.394 60.000 0.00 0.00 38.99 4.85
616 617 0.744771 GGGAGAAAAGCCTACCAGCG 60.745 60.000 0.00 0.00 37.12 5.18
617 618 0.249398 GGAGAAAAGCCTACCAGCGA 59.751 55.000 0.00 0.00 38.01 4.93
618 619 1.338769 GGAGAAAAGCCTACCAGCGAA 60.339 52.381 0.00 0.00 38.01 4.70
619 620 2.423577 GAGAAAAGCCTACCAGCGAAA 58.576 47.619 0.00 0.00 38.01 3.46
620 621 2.152016 AGAAAAGCCTACCAGCGAAAC 58.848 47.619 0.00 0.00 38.01 2.78
621 622 1.877443 GAAAAGCCTACCAGCGAAACA 59.123 47.619 0.00 0.00 38.01 2.83
622 623 1.975660 AAAGCCTACCAGCGAAACAA 58.024 45.000 0.00 0.00 38.01 2.83
623 624 1.975660 AAGCCTACCAGCGAAACAAA 58.024 45.000 0.00 0.00 38.01 2.83
624 625 1.975660 AGCCTACCAGCGAAACAAAA 58.024 45.000 0.00 0.00 38.01 2.44
625 626 2.303175 AGCCTACCAGCGAAACAAAAA 58.697 42.857 0.00 0.00 38.01 1.94
626 627 2.034179 AGCCTACCAGCGAAACAAAAAC 59.966 45.455 0.00 0.00 38.01 2.43
627 628 2.223618 GCCTACCAGCGAAACAAAAACA 60.224 45.455 0.00 0.00 0.00 2.83
628 629 3.735514 GCCTACCAGCGAAACAAAAACAA 60.736 43.478 0.00 0.00 0.00 2.83
629 630 4.425520 CCTACCAGCGAAACAAAAACAAA 58.574 39.130 0.00 0.00 0.00 2.83
630 631 4.266739 CCTACCAGCGAAACAAAAACAAAC 59.733 41.667 0.00 0.00 0.00 2.93
631 632 3.654414 ACCAGCGAAACAAAAACAAACA 58.346 36.364 0.00 0.00 0.00 2.83
632 633 4.058817 ACCAGCGAAACAAAAACAAACAA 58.941 34.783 0.00 0.00 0.00 2.83
633 634 4.084276 ACCAGCGAAACAAAAACAAACAAC 60.084 37.500 0.00 0.00 0.00 3.32
634 635 4.071570 CAGCGAAACAAAAACAAACAACG 58.928 39.130 0.00 0.00 0.00 4.10
635 636 3.736759 AGCGAAACAAAAACAAACAACGT 59.263 34.783 0.00 0.00 0.00 3.99
636 637 3.830339 GCGAAACAAAAACAAACAACGTG 59.170 39.130 0.00 0.00 0.00 4.49
637 638 4.375105 GCGAAACAAAAACAAACAACGTGA 60.375 37.500 0.00 0.00 0.00 4.35
638 639 5.061145 CGAAACAAAAACAAACAACGTGAC 58.939 37.500 0.00 0.00 0.00 3.67
639 640 5.108179 CGAAACAAAAACAAACAACGTGACT 60.108 36.000 0.00 0.00 0.00 3.41
640 641 6.086502 CGAAACAAAAACAAACAACGTGACTA 59.913 34.615 0.00 0.00 0.00 2.59
641 642 7.201282 CGAAACAAAAACAAACAACGTGACTAT 60.201 33.333 0.00 0.00 0.00 2.12
642 643 7.500807 AACAAAAACAAACAACGTGACTATC 57.499 32.000 0.00 0.00 0.00 2.08
643 644 5.735427 ACAAAAACAAACAACGTGACTATCG 59.265 36.000 0.00 0.00 0.00 2.92
644 645 5.473796 AAAACAAACAACGTGACTATCGT 57.526 34.783 0.00 0.00 43.45 3.73
645 646 4.446857 AACAAACAACGTGACTATCGTG 57.553 40.909 0.00 0.00 41.38 4.35
646 647 3.708890 ACAAACAACGTGACTATCGTGA 58.291 40.909 0.00 0.00 41.38 4.35
647 648 3.734231 ACAAACAACGTGACTATCGTGAG 59.266 43.478 0.00 0.00 41.38 3.51
648 649 1.978542 ACAACGTGACTATCGTGAGC 58.021 50.000 0.00 0.00 41.38 4.26
649 650 1.540267 ACAACGTGACTATCGTGAGCT 59.460 47.619 0.00 0.00 41.38 4.09
650 651 2.745821 ACAACGTGACTATCGTGAGCTA 59.254 45.455 0.00 0.00 41.38 3.32
651 652 3.377485 ACAACGTGACTATCGTGAGCTAT 59.623 43.478 0.00 0.00 41.38 2.97
652 653 3.881780 ACGTGACTATCGTGAGCTATC 57.118 47.619 0.00 0.00 40.07 2.08
653 654 3.203716 ACGTGACTATCGTGAGCTATCA 58.796 45.455 0.00 0.00 40.07 2.15
663 664 2.627515 TGAGCTATCACCCTTGATGC 57.372 50.000 0.00 0.43 42.79 3.91
664 665 1.839354 TGAGCTATCACCCTTGATGCA 59.161 47.619 0.00 0.00 42.79 3.96
665 666 2.216898 GAGCTATCACCCTTGATGCAC 58.783 52.381 0.00 0.00 42.79 4.57
666 667 1.561076 AGCTATCACCCTTGATGCACA 59.439 47.619 0.00 0.00 42.79 4.57
667 668 1.945394 GCTATCACCCTTGATGCACAG 59.055 52.381 0.00 0.00 42.79 3.66
668 669 1.945394 CTATCACCCTTGATGCACAGC 59.055 52.381 0.00 0.00 42.79 4.40
669 670 0.330604 ATCACCCTTGATGCACAGCT 59.669 50.000 0.00 0.00 41.23 4.24
670 671 0.607217 TCACCCTTGATGCACAGCTG 60.607 55.000 13.48 13.48 0.00 4.24
671 672 0.607217 CACCCTTGATGCACAGCTGA 60.607 55.000 23.35 0.00 0.00 4.26
672 673 0.111061 ACCCTTGATGCACAGCTGAA 59.889 50.000 23.35 5.79 0.00 3.02
673 674 1.272313 ACCCTTGATGCACAGCTGAAT 60.272 47.619 23.35 10.86 0.00 2.57
674 675 1.134367 CCCTTGATGCACAGCTGAATG 59.866 52.381 23.35 10.64 0.00 2.67
675 676 1.134367 CCTTGATGCACAGCTGAATGG 59.866 52.381 23.35 7.88 0.00 3.16
676 677 1.816835 CTTGATGCACAGCTGAATGGT 59.183 47.619 23.35 1.61 0.00 3.55
677 678 1.913778 TGATGCACAGCTGAATGGTT 58.086 45.000 23.35 0.00 0.00 3.67
678 679 2.241160 TGATGCACAGCTGAATGGTTT 58.759 42.857 23.35 0.00 0.00 3.27
679 680 3.419943 TGATGCACAGCTGAATGGTTTA 58.580 40.909 23.35 0.00 0.00 2.01
680 681 3.825585 TGATGCACAGCTGAATGGTTTAA 59.174 39.130 23.35 0.00 0.00 1.52
681 682 4.463539 TGATGCACAGCTGAATGGTTTAAT 59.536 37.500 23.35 0.41 0.00 1.40
682 683 4.870123 TGCACAGCTGAATGGTTTAATT 57.130 36.364 23.35 0.00 0.00 1.40
683 684 5.212532 TGCACAGCTGAATGGTTTAATTT 57.787 34.783 23.35 0.00 0.00 1.82
684 685 5.609423 TGCACAGCTGAATGGTTTAATTTT 58.391 33.333 23.35 0.00 0.00 1.82
685 686 5.695816 TGCACAGCTGAATGGTTTAATTTTC 59.304 36.000 23.35 0.00 0.00 2.29
686 687 5.928264 GCACAGCTGAATGGTTTAATTTTCT 59.072 36.000 23.35 0.00 0.00 2.52
687 688 7.090173 GCACAGCTGAATGGTTTAATTTTCTA 58.910 34.615 23.35 0.00 0.00 2.10
688 689 7.761249 GCACAGCTGAATGGTTTAATTTTCTAT 59.239 33.333 23.35 0.00 0.00 1.98
689 690 9.294030 CACAGCTGAATGGTTTAATTTTCTATC 57.706 33.333 23.35 0.00 0.00 2.08
690 691 9.247861 ACAGCTGAATGGTTTAATTTTCTATCT 57.752 29.630 23.35 0.00 0.00 1.98
722 723 9.561069 AAAAATGATACGCTATTGAGGTATTCT 57.439 29.630 0.00 0.00 0.00 2.40
723 724 8.764524 AAATGATACGCTATTGAGGTATTCTC 57.235 34.615 0.00 0.00 42.74 2.87
724 725 5.939457 TGATACGCTATTGAGGTATTCTCG 58.061 41.667 0.00 0.00 45.32 4.04
725 726 5.704053 TGATACGCTATTGAGGTATTCTCGA 59.296 40.000 0.00 0.00 45.32 4.04
726 727 4.913335 ACGCTATTGAGGTATTCTCGAA 57.087 40.909 0.00 0.00 45.32 3.71
727 728 4.861210 ACGCTATTGAGGTATTCTCGAAG 58.139 43.478 0.00 0.00 45.32 3.79
728 729 4.579340 ACGCTATTGAGGTATTCTCGAAGA 59.421 41.667 0.00 0.00 45.32 2.87
729 730 5.067413 ACGCTATTGAGGTATTCTCGAAGAA 59.933 40.000 0.00 0.00 45.32 2.52
730 731 5.977725 CGCTATTGAGGTATTCTCGAAGAAA 59.022 40.000 2.21 0.00 45.32 2.52
731 732 6.475727 CGCTATTGAGGTATTCTCGAAGAAAA 59.524 38.462 2.21 0.00 45.32 2.29
732 733 7.010183 CGCTATTGAGGTATTCTCGAAGAAAAA 59.990 37.037 2.21 0.00 45.32 1.94
733 734 8.331742 GCTATTGAGGTATTCTCGAAGAAAAAG 58.668 37.037 2.21 0.00 45.32 2.27
734 735 7.617041 ATTGAGGTATTCTCGAAGAAAAAGG 57.383 36.000 2.21 0.00 45.32 3.11
735 736 6.354794 TGAGGTATTCTCGAAGAAAAAGGA 57.645 37.500 2.21 0.00 45.32 3.36
736 737 6.164176 TGAGGTATTCTCGAAGAAAAAGGAC 58.836 40.000 2.21 0.00 45.32 3.85
737 738 5.169295 AGGTATTCTCGAAGAAAAAGGACG 58.831 41.667 2.21 0.00 37.82 4.79
738 739 4.928020 GGTATTCTCGAAGAAAAAGGACGT 59.072 41.667 0.00 0.00 37.82 4.34
739 740 4.992381 ATTCTCGAAGAAAAAGGACGTG 57.008 40.909 0.00 0.00 37.82 4.49
740 741 2.132762 TCTCGAAGAAAAAGGACGTGC 58.867 47.619 0.00 0.00 34.09 5.34
741 742 0.856641 TCGAAGAAAAAGGACGTGCG 59.143 50.000 0.00 0.00 0.00 5.34
742 743 0.721483 CGAAGAAAAAGGACGTGCGC 60.721 55.000 0.00 0.00 0.00 6.09
743 744 0.586802 GAAGAAAAAGGACGTGCGCT 59.413 50.000 9.73 0.00 0.00 5.92
744 745 1.796459 GAAGAAAAAGGACGTGCGCTA 59.204 47.619 9.73 0.00 0.00 4.26
745 746 2.094762 AGAAAAAGGACGTGCGCTAT 57.905 45.000 9.73 0.00 0.00 2.97
746 747 2.000447 AGAAAAAGGACGTGCGCTATC 59.000 47.619 9.73 2.98 0.00 2.08
747 748 0.719465 AAAAAGGACGTGCGCTATCG 59.281 50.000 9.73 13.52 39.07 2.92
748 749 0.108992 AAAAGGACGTGCGCTATCGA 60.109 50.000 21.71 0.00 38.10 3.59
749 750 0.801067 AAAGGACGTGCGCTATCGAC 60.801 55.000 21.71 16.60 38.10 4.20
750 751 2.609183 AAGGACGTGCGCTATCGACC 62.609 60.000 23.30 23.30 40.76 4.79
1328 1368 1.487976 CACCTGCATCCACTGGATACT 59.512 52.381 10.43 0.00 40.98 2.12
1665 1705 5.031066 TCCGAATAAACTCCCCAACTATG 57.969 43.478 0.00 0.00 0.00 2.23
1885 1925 2.681848 CTCATGATTGGCTCCACTGTTC 59.318 50.000 0.00 0.00 0.00 3.18
2048 2088 4.202151 ACAAACTGTCAAGATTTTGGCTCC 60.202 41.667 1.98 0.00 39.65 4.70
2629 2669 3.417101 TGTGTGTTGTCAAACCTGAGTT 58.583 40.909 0.00 0.00 38.03 3.01
3384 4615 4.168101 TCCCTCTGCCCTACAATATAAGG 58.832 47.826 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
109 110 2.104132 CGCGACATCGACATCCCA 59.896 61.111 0.00 0.00 43.02 4.37
126 127 4.154347 CTCCAGGCCTGCGAGGTC 62.154 72.222 29.64 0.00 41.32 3.85
127 128 4.704103 TCTCCAGGCCTGCGAGGT 62.704 66.667 33.16 2.29 37.80 3.85
128 129 3.393970 TTCTCCAGGCCTGCGAGG 61.394 66.667 33.16 21.32 38.80 4.63
129 130 2.125350 GTTCTCCAGGCCTGCGAG 60.125 66.667 30.66 30.66 32.68 5.03
130 131 4.069232 CGTTCTCCAGGCCTGCGA 62.069 66.667 28.39 22.92 0.00 5.10
132 133 3.672295 CTCCGTTCTCCAGGCCTGC 62.672 68.421 28.39 12.29 0.00 4.85
133 134 1.544825 TTCTCCGTTCTCCAGGCCTG 61.545 60.000 26.87 26.87 0.00 4.85
134 135 1.229209 TTCTCCGTTCTCCAGGCCT 60.229 57.895 0.00 0.00 0.00 5.19
135 136 1.219393 CTTCTCCGTTCTCCAGGCC 59.781 63.158 0.00 0.00 0.00 5.19
136 137 1.448717 GCTTCTCCGTTCTCCAGGC 60.449 63.158 0.00 0.00 0.00 4.85
137 138 1.219393 GGCTTCTCCGTTCTCCAGG 59.781 63.158 0.00 0.00 0.00 4.45
138 139 0.539051 ATGGCTTCTCCGTTCTCCAG 59.461 55.000 0.00 0.00 37.80 3.86
139 140 0.984230 AATGGCTTCTCCGTTCTCCA 59.016 50.000 0.00 0.00 39.93 3.86
140 141 1.373570 CAATGGCTTCTCCGTTCTCC 58.626 55.000 0.00 0.00 42.09 3.71
141 142 1.373570 CCAATGGCTTCTCCGTTCTC 58.626 55.000 0.00 0.00 42.09 2.87
142 143 0.035056 CCCAATGGCTTCTCCGTTCT 60.035 55.000 0.00 0.00 42.09 3.01
143 144 1.032114 CCCCAATGGCTTCTCCGTTC 61.032 60.000 0.00 0.00 42.09 3.95
144 145 1.000896 CCCCAATGGCTTCTCCGTT 60.001 57.895 0.00 0.00 44.80 4.44
145 146 1.281925 ATCCCCAATGGCTTCTCCGT 61.282 55.000 0.00 0.00 37.80 4.69
146 147 0.536006 GATCCCCAATGGCTTCTCCG 60.536 60.000 0.00 0.00 37.80 4.63
147 148 0.178978 GGATCCCCAATGGCTTCTCC 60.179 60.000 0.00 0.00 0.00 3.71
148 149 0.536006 CGGATCCCCAATGGCTTCTC 60.536 60.000 6.06 0.00 0.00 2.87
149 150 1.533711 CGGATCCCCAATGGCTTCT 59.466 57.895 6.06 0.00 0.00 2.85
150 151 2.196245 GCGGATCCCCAATGGCTTC 61.196 63.158 6.06 0.00 0.00 3.86
151 152 2.123726 GCGGATCCCCAATGGCTT 60.124 61.111 6.06 0.00 0.00 4.35
152 153 3.419580 TGCGGATCCCCAATGGCT 61.420 61.111 6.06 0.00 0.00 4.75
153 154 3.219198 GTGCGGATCCCCAATGGC 61.219 66.667 6.06 2.88 0.00 4.40
154 155 2.901840 CGTGCGGATCCCCAATGG 60.902 66.667 6.06 0.00 0.00 3.16
155 156 2.318519 TACCGTGCGGATCCCCAATG 62.319 60.000 18.16 0.45 38.96 2.82
156 157 1.415672 ATACCGTGCGGATCCCCAAT 61.416 55.000 18.16 0.00 38.96 3.16
157 158 2.067605 ATACCGTGCGGATCCCCAA 61.068 57.895 18.16 0.00 38.96 4.12
158 159 2.445085 ATACCGTGCGGATCCCCA 60.445 61.111 18.16 0.00 38.96 4.96
159 160 2.030562 CATACCGTGCGGATCCCC 59.969 66.667 18.16 0.00 38.96 4.81
160 161 2.030562 CCATACCGTGCGGATCCC 59.969 66.667 18.16 0.00 38.96 3.85
161 162 2.665185 GCCATACCGTGCGGATCC 60.665 66.667 18.16 0.00 38.96 3.36
162 163 2.665185 GGCCATACCGTGCGGATC 60.665 66.667 18.16 1.44 38.96 3.36
171 172 1.875364 GTTCGTCGACGGCCATACC 60.875 63.158 35.05 6.75 40.29 2.73
172 173 1.153978 TGTTCGTCGACGGCCATAC 60.154 57.895 35.05 23.60 40.29 2.39
173 174 1.153978 GTGTTCGTCGACGGCCATA 60.154 57.895 35.05 15.12 40.29 2.74
174 175 2.431942 GTGTTCGTCGACGGCCAT 60.432 61.111 35.05 0.00 40.29 4.40
175 176 4.651008 GGTGTTCGTCGACGGCCA 62.651 66.667 35.05 27.34 40.29 5.36
176 177 4.353437 AGGTGTTCGTCGACGGCC 62.353 66.667 35.05 28.32 40.29 6.13
177 178 2.804090 GAGGTGTTCGTCGACGGC 60.804 66.667 35.05 27.02 40.29 5.68
186 187 3.173240 GACGCGCTCGAGGTGTTC 61.173 66.667 15.58 7.64 39.41 3.18
187 188 4.719369 GGACGCGCTCGAGGTGTT 62.719 66.667 15.58 2.54 39.41 3.32
189 190 4.838486 GAGGACGCGCTCGAGGTG 62.838 72.222 15.58 13.10 39.41 4.00
209 210 4.467084 TCGATCTGCCGCCCAACC 62.467 66.667 0.00 0.00 0.00 3.77
210 211 3.195698 GTCGATCTGCCGCCCAAC 61.196 66.667 0.00 0.00 0.00 3.77
211 212 4.812476 CGTCGATCTGCCGCCCAA 62.812 66.667 0.00 0.00 0.00 4.12
300 301 3.374402 ACCGTGAGCTCACCGGAG 61.374 66.667 39.79 28.85 43.66 4.63
301 302 3.680786 CACCGTGAGCTCACCGGA 61.681 66.667 39.79 14.19 43.66 5.14
302 303 4.742201 CCACCGTGAGCTCACCGG 62.742 72.222 35.46 35.46 43.66 5.28
321 322 2.125350 CAGGTTCCCAGCTCGAGC 60.125 66.667 30.01 30.01 42.49 5.03
322 323 2.581354 CCAGGTTCCCAGCTCGAG 59.419 66.667 8.45 8.45 0.00 4.04
323 324 3.003173 CCCAGGTTCCCAGCTCGA 61.003 66.667 0.00 0.00 0.00 4.04
324 325 3.003173 TCCCAGGTTCCCAGCTCG 61.003 66.667 0.00 0.00 0.00 5.03
325 326 2.674220 CCTCCCAGGTTCCCAGCTC 61.674 68.421 0.00 0.00 0.00 4.09
326 327 2.612115 CCTCCCAGGTTCCCAGCT 60.612 66.667 0.00 0.00 0.00 4.24
327 328 2.610859 TCCTCCCAGGTTCCCAGC 60.611 66.667 0.00 0.00 36.53 4.85
328 329 1.997874 CCTCCTCCCAGGTTCCCAG 60.998 68.421 0.00 0.00 36.53 4.45
329 330 2.124996 CCTCCTCCCAGGTTCCCA 59.875 66.667 0.00 0.00 36.53 4.37
330 331 2.125225 ACCTCCTCCCAGGTTCCC 59.875 66.667 0.00 0.00 45.24 3.97
331 332 1.229529 TCACCTCCTCCCAGGTTCC 60.230 63.158 0.00 0.00 45.24 3.62
332 333 1.268283 CCTCACCTCCTCCCAGGTTC 61.268 65.000 0.00 0.00 45.24 3.62
333 334 1.229658 CCTCACCTCCTCCCAGGTT 60.230 63.158 0.00 0.00 45.24 3.50
335 336 1.382420 CTCCTCACCTCCTCCCAGG 60.382 68.421 0.00 0.00 39.80 4.45
336 337 0.396974 CTCTCCTCACCTCCTCCCAG 60.397 65.000 0.00 0.00 0.00 4.45
337 338 1.700368 CTCTCCTCACCTCCTCCCA 59.300 63.158 0.00 0.00 0.00 4.37
338 339 1.075600 CCTCTCCTCACCTCCTCCC 60.076 68.421 0.00 0.00 0.00 4.30
339 340 0.686112 CACCTCTCCTCACCTCCTCC 60.686 65.000 0.00 0.00 0.00 4.30
340 341 0.686112 CCACCTCTCCTCACCTCCTC 60.686 65.000 0.00 0.00 0.00 3.71
341 342 1.390125 CCACCTCTCCTCACCTCCT 59.610 63.158 0.00 0.00 0.00 3.69
342 343 2.363172 GCCACCTCTCCTCACCTCC 61.363 68.421 0.00 0.00 0.00 4.30
343 344 1.610673 TGCCACCTCTCCTCACCTC 60.611 63.158 0.00 0.00 0.00 3.85
344 345 1.611851 CTGCCACCTCTCCTCACCT 60.612 63.158 0.00 0.00 0.00 4.00
345 346 2.985456 CTGCCACCTCTCCTCACC 59.015 66.667 0.00 0.00 0.00 4.02
346 347 2.267324 GCTGCCACCTCTCCTCAC 59.733 66.667 0.00 0.00 0.00 3.51
347 348 3.005539 GGCTGCCACCTCTCCTCA 61.006 66.667 15.17 0.00 0.00 3.86
348 349 2.686835 AGGCTGCCACCTCTCCTC 60.687 66.667 22.65 0.00 33.62 3.71
354 355 4.345286 AGGGAGAGGCTGCCACCT 62.345 66.667 22.65 18.45 44.71 4.00
355 356 3.791586 GAGGGAGAGGCTGCCACC 61.792 72.222 22.65 19.36 44.71 4.61
356 357 4.154347 CGAGGGAGAGGCTGCCAC 62.154 72.222 22.65 15.46 44.71 5.01
359 360 4.527583 CAGCGAGGGAGAGGCTGC 62.528 72.222 0.00 0.00 46.39 5.25
383 384 4.740822 AAGGCGGGTGTCCCATGC 62.741 66.667 5.64 1.33 45.83 4.06
384 385 2.751436 CAAGGCGGGTGTCCCATG 60.751 66.667 5.64 0.00 45.83 3.66
385 386 4.740822 GCAAGGCGGGTGTCCCAT 62.741 66.667 5.64 0.00 45.83 4.00
388 389 4.643387 ACAGCAAGGCGGGTGTCC 62.643 66.667 10.51 0.00 45.65 4.02
396 397 4.785453 CTCCCCCGACAGCAAGGC 62.785 72.222 0.00 0.00 0.00 4.35
397 398 4.101448 CCTCCCCCGACAGCAAGG 62.101 72.222 0.00 0.00 0.00 3.61
398 399 3.003173 TCCTCCCCCGACAGCAAG 61.003 66.667 0.00 0.00 0.00 4.01
399 400 3.003173 CTCCTCCCCCGACAGCAA 61.003 66.667 0.00 0.00 0.00 3.91
402 403 3.465403 CTGCTCCTCCCCCGACAG 61.465 72.222 0.00 0.00 0.00 3.51
416 417 3.406595 ATAGGAAGGGCGGTGCTGC 62.407 63.158 0.00 0.00 0.00 5.25
417 418 1.227674 GATAGGAAGGGCGGTGCTG 60.228 63.158 0.00 0.00 0.00 4.41
418 419 1.689233 TGATAGGAAGGGCGGTGCT 60.689 57.895 0.00 0.00 0.00 4.40
419 420 1.227674 CTGATAGGAAGGGCGGTGC 60.228 63.158 0.00 0.00 0.00 5.01
420 421 1.051812 ATCTGATAGGAAGGGCGGTG 58.948 55.000 0.00 0.00 0.00 4.94
421 422 1.807814 AATCTGATAGGAAGGGCGGT 58.192 50.000 0.00 0.00 0.00 5.68
422 423 2.354203 GCTAATCTGATAGGAAGGGCGG 60.354 54.545 0.00 0.00 0.00 6.13
423 424 2.354203 GGCTAATCTGATAGGAAGGGCG 60.354 54.545 0.00 0.00 0.00 6.13
424 425 2.639839 TGGCTAATCTGATAGGAAGGGC 59.360 50.000 0.00 0.00 0.00 5.19
425 426 3.648067 TGTGGCTAATCTGATAGGAAGGG 59.352 47.826 0.00 0.00 0.00 3.95
426 427 4.963318 TGTGGCTAATCTGATAGGAAGG 57.037 45.455 0.00 0.00 0.00 3.46
427 428 6.825721 ACTTTTGTGGCTAATCTGATAGGAAG 59.174 38.462 0.00 0.00 0.00 3.46
428 429 6.599244 CACTTTTGTGGCTAATCTGATAGGAA 59.401 38.462 0.00 0.00 46.16 3.36
429 430 6.115446 CACTTTTGTGGCTAATCTGATAGGA 58.885 40.000 0.00 0.00 46.16 2.94
430 431 6.369059 CACTTTTGTGGCTAATCTGATAGG 57.631 41.667 0.00 0.00 46.16 2.57
445 446 2.777692 TCCTCAGGGTCTTCACTTTTGT 59.222 45.455 0.00 0.00 0.00 2.83
446 447 3.071602 TCTCCTCAGGGTCTTCACTTTTG 59.928 47.826 0.00 0.00 0.00 2.44
447 448 3.318313 TCTCCTCAGGGTCTTCACTTTT 58.682 45.455 0.00 0.00 0.00 2.27
448 449 2.977808 TCTCCTCAGGGTCTTCACTTT 58.022 47.619 0.00 0.00 0.00 2.66
449 450 2.704190 TCTCCTCAGGGTCTTCACTT 57.296 50.000 0.00 0.00 0.00 3.16
450 451 2.534990 CTTCTCCTCAGGGTCTTCACT 58.465 52.381 0.00 0.00 0.00 3.41
451 452 1.066502 GCTTCTCCTCAGGGTCTTCAC 60.067 57.143 0.00 0.00 0.00 3.18
452 453 1.270907 GCTTCTCCTCAGGGTCTTCA 58.729 55.000 0.00 0.00 0.00 3.02
453 454 1.206849 CTGCTTCTCCTCAGGGTCTTC 59.793 57.143 0.00 0.00 0.00 2.87
454 455 1.274712 CTGCTTCTCCTCAGGGTCTT 58.725 55.000 0.00 0.00 0.00 3.01
455 456 0.617249 CCTGCTTCTCCTCAGGGTCT 60.617 60.000 0.00 0.00 44.64 3.85
456 457 1.904032 CCTGCTTCTCCTCAGGGTC 59.096 63.158 0.00 0.00 44.64 4.46
457 458 4.143740 CCTGCTTCTCCTCAGGGT 57.856 61.111 0.00 0.00 44.64 4.34
460 461 0.327591 AAAGGCCTGCTTCTCCTCAG 59.672 55.000 5.69 0.00 0.00 3.35
461 462 0.326264 GAAAGGCCTGCTTCTCCTCA 59.674 55.000 5.69 0.00 0.00 3.86
462 463 0.617935 AGAAAGGCCTGCTTCTCCTC 59.382 55.000 5.69 0.00 0.00 3.71
463 464 0.617935 GAGAAAGGCCTGCTTCTCCT 59.382 55.000 27.01 9.80 41.07 3.69
464 465 3.167189 GAGAAAGGCCTGCTTCTCC 57.833 57.895 27.01 14.69 41.07 3.71
465 466 0.326264 TGGAGAAAGGCCTGCTTCTC 59.674 55.000 28.46 28.46 44.53 2.87
466 467 0.327591 CTGGAGAAAGGCCTGCTTCT 59.672 55.000 17.88 17.88 34.58 2.85
467 468 0.037447 ACTGGAGAAAGGCCTGCTTC 59.963 55.000 5.69 7.71 0.00 3.86
468 469 0.037447 GACTGGAGAAAGGCCTGCTT 59.963 55.000 5.69 0.00 0.00 3.91
469 470 1.682257 GACTGGAGAAAGGCCTGCT 59.318 57.895 5.69 7.16 0.00 4.24
470 471 1.743252 CGACTGGAGAAAGGCCTGC 60.743 63.158 5.69 0.73 0.00 4.85
471 472 1.078848 CCGACTGGAGAAAGGCCTG 60.079 63.158 5.69 0.00 37.49 4.85
472 473 2.960688 GCCGACTGGAGAAAGGCCT 61.961 63.158 0.00 0.00 41.81 5.19
473 474 2.436824 GCCGACTGGAGAAAGGCC 60.437 66.667 0.00 0.00 41.81 5.19
475 476 1.743252 GCTGCCGACTGGAGAAAGG 60.743 63.158 0.00 0.00 37.49 3.11
476 477 2.097038 CGCTGCCGACTGGAGAAAG 61.097 63.158 0.00 0.00 37.49 2.62
477 478 2.048222 CGCTGCCGACTGGAGAAA 60.048 61.111 0.00 0.00 37.49 2.52
478 479 4.742201 GCGCTGCCGACTGGAGAA 62.742 66.667 0.00 0.00 37.49 2.87
525 526 2.359975 AACTAGGTTGCGGCAGCC 60.360 61.111 26.16 26.16 44.33 4.85
526 527 1.639298 CTCAACTAGGTTGCGGCAGC 61.639 60.000 8.43 8.43 42.55 5.25
527 528 0.037326 TCTCAACTAGGTTGCGGCAG 60.037 55.000 1.67 0.00 42.55 4.85
528 529 0.037326 CTCTCAACTAGGTTGCGGCA 60.037 55.000 0.00 0.00 42.55 5.69
529 530 0.741221 CCTCTCAACTAGGTTGCGGC 60.741 60.000 5.63 0.00 42.55 6.53
530 531 0.895530 TCCTCTCAACTAGGTTGCGG 59.104 55.000 5.63 6.31 42.55 5.69
531 532 1.134965 CCTCCTCTCAACTAGGTTGCG 60.135 57.143 5.63 0.39 42.55 4.85
532 533 2.180276 TCCTCCTCTCAACTAGGTTGC 58.820 52.381 5.63 0.00 42.55 4.17
533 534 4.891992 TTTCCTCCTCTCAACTAGGTTG 57.108 45.455 4.25 4.25 43.99 3.77
534 535 5.622180 GTTTTTCCTCCTCTCAACTAGGTT 58.378 41.667 0.00 0.00 35.48 3.50
535 536 4.262506 CGTTTTTCCTCCTCTCAACTAGGT 60.263 45.833 0.00 0.00 35.48 3.08
536 537 4.021368 TCGTTTTTCCTCCTCTCAACTAGG 60.021 45.833 0.00 0.00 35.26 3.02
537 538 5.135508 TCGTTTTTCCTCCTCTCAACTAG 57.864 43.478 0.00 0.00 0.00 2.57
538 539 5.540400 TTCGTTTTTCCTCCTCTCAACTA 57.460 39.130 0.00 0.00 0.00 2.24
539 540 4.417426 TTCGTTTTTCCTCCTCTCAACT 57.583 40.909 0.00 0.00 0.00 3.16
540 541 4.814771 TCTTTCGTTTTTCCTCCTCTCAAC 59.185 41.667 0.00 0.00 0.00 3.18
541 542 5.031066 TCTTTCGTTTTTCCTCCTCTCAA 57.969 39.130 0.00 0.00 0.00 3.02
542 543 4.344102 TCTCTTTCGTTTTTCCTCCTCTCA 59.656 41.667 0.00 0.00 0.00 3.27
543 544 4.687018 GTCTCTTTCGTTTTTCCTCCTCTC 59.313 45.833 0.00 0.00 0.00 3.20
544 545 4.101119 TGTCTCTTTCGTTTTTCCTCCTCT 59.899 41.667 0.00 0.00 0.00 3.69
545 546 4.377897 TGTCTCTTTCGTTTTTCCTCCTC 58.622 43.478 0.00 0.00 0.00 3.71
546 547 4.417426 TGTCTCTTTCGTTTTTCCTCCT 57.583 40.909 0.00 0.00 0.00 3.69
547 548 5.494632 TTTGTCTCTTTCGTTTTTCCTCC 57.505 39.130 0.00 0.00 0.00 4.30
548 549 7.218393 GTCTTTTTGTCTCTTTCGTTTTTCCTC 59.782 37.037 0.00 0.00 0.00 3.71
549 550 7.027760 GTCTTTTTGTCTCTTTCGTTTTTCCT 58.972 34.615 0.00 0.00 0.00 3.36
550 551 6.804783 TGTCTTTTTGTCTCTTTCGTTTTTCC 59.195 34.615 0.00 0.00 0.00 3.13
551 552 7.790861 TGTCTTTTTGTCTCTTTCGTTTTTC 57.209 32.000 0.00 0.00 0.00 2.29
552 553 8.582433 TTTGTCTTTTTGTCTCTTTCGTTTTT 57.418 26.923 0.00 0.00 0.00 1.94
553 554 8.582433 TTTTGTCTTTTTGTCTCTTTCGTTTT 57.418 26.923 0.00 0.00 0.00 2.43
554 555 8.079809 TCTTTTGTCTTTTTGTCTCTTTCGTTT 58.920 29.630 0.00 0.00 0.00 3.60
555 556 7.590279 TCTTTTGTCTTTTTGTCTCTTTCGTT 58.410 30.769 0.00 0.00 0.00 3.85
556 557 7.141100 TCTTTTGTCTTTTTGTCTCTTTCGT 57.859 32.000 0.00 0.00 0.00 3.85
557 558 6.688813 CCTCTTTTGTCTTTTTGTCTCTTTCG 59.311 38.462 0.00 0.00 0.00 3.46
558 559 7.762382 TCCTCTTTTGTCTTTTTGTCTCTTTC 58.238 34.615 0.00 0.00 0.00 2.62
559 560 7.703058 TCCTCTTTTGTCTTTTTGTCTCTTT 57.297 32.000 0.00 0.00 0.00 2.52
560 561 7.611855 TCTTCCTCTTTTGTCTTTTTGTCTCTT 59.388 33.333 0.00 0.00 0.00 2.85
561 562 7.112779 TCTTCCTCTTTTGTCTTTTTGTCTCT 58.887 34.615 0.00 0.00 0.00 3.10
562 563 7.321745 TCTTCCTCTTTTGTCTTTTTGTCTC 57.678 36.000 0.00 0.00 0.00 3.36
563 564 7.629437 GCTTCTTCCTCTTTTGTCTTTTTGTCT 60.629 37.037 0.00 0.00 0.00 3.41
564 565 6.473778 GCTTCTTCCTCTTTTGTCTTTTTGTC 59.526 38.462 0.00 0.00 0.00 3.18
565 566 6.333416 GCTTCTTCCTCTTTTGTCTTTTTGT 58.667 36.000 0.00 0.00 0.00 2.83
566 567 5.456822 CGCTTCTTCCTCTTTTGTCTTTTTG 59.543 40.000 0.00 0.00 0.00 2.44
567 568 5.125578 ACGCTTCTTCCTCTTTTGTCTTTTT 59.874 36.000 0.00 0.00 0.00 1.94
568 569 4.640647 ACGCTTCTTCCTCTTTTGTCTTTT 59.359 37.500 0.00 0.00 0.00 2.27
569 570 4.035675 CACGCTTCTTCCTCTTTTGTCTTT 59.964 41.667 0.00 0.00 0.00 2.52
570 571 3.561725 CACGCTTCTTCCTCTTTTGTCTT 59.438 43.478 0.00 0.00 0.00 3.01
571 572 3.134458 CACGCTTCTTCCTCTTTTGTCT 58.866 45.455 0.00 0.00 0.00 3.41
572 573 2.872858 ACACGCTTCTTCCTCTTTTGTC 59.127 45.455 0.00 0.00 0.00 3.18
573 574 2.919228 ACACGCTTCTTCCTCTTTTGT 58.081 42.857 0.00 0.00 0.00 2.83
574 575 4.142816 CCATACACGCTTCTTCCTCTTTTG 60.143 45.833 0.00 0.00 0.00 2.44
575 576 4.003648 CCATACACGCTTCTTCCTCTTTT 58.996 43.478 0.00 0.00 0.00 2.27
576 577 3.600388 CCATACACGCTTCTTCCTCTTT 58.400 45.455 0.00 0.00 0.00 2.52
577 578 2.093447 CCCATACACGCTTCTTCCTCTT 60.093 50.000 0.00 0.00 0.00 2.85
578 579 1.482593 CCCATACACGCTTCTTCCTCT 59.517 52.381 0.00 0.00 0.00 3.69
579 580 1.473434 CCCCATACACGCTTCTTCCTC 60.473 57.143 0.00 0.00 0.00 3.71
580 581 0.541863 CCCCATACACGCTTCTTCCT 59.458 55.000 0.00 0.00 0.00 3.36
581 582 0.539986 TCCCCATACACGCTTCTTCC 59.460 55.000 0.00 0.00 0.00 3.46
582 583 1.480954 TCTCCCCATACACGCTTCTTC 59.519 52.381 0.00 0.00 0.00 2.87
583 584 1.568504 TCTCCCCATACACGCTTCTT 58.431 50.000 0.00 0.00 0.00 2.52
584 585 1.568504 TTCTCCCCATACACGCTTCT 58.431 50.000 0.00 0.00 0.00 2.85
585 586 2.396590 TTTCTCCCCATACACGCTTC 57.603 50.000 0.00 0.00 0.00 3.86
586 587 2.711542 CTTTTCTCCCCATACACGCTT 58.288 47.619 0.00 0.00 0.00 4.68
587 588 1.679032 GCTTTTCTCCCCATACACGCT 60.679 52.381 0.00 0.00 0.00 5.07
588 589 0.733150 GCTTTTCTCCCCATACACGC 59.267 55.000 0.00 0.00 0.00 5.34
589 590 1.065418 AGGCTTTTCTCCCCATACACG 60.065 52.381 0.00 0.00 0.00 4.49
590 591 2.808906 AGGCTTTTCTCCCCATACAC 57.191 50.000 0.00 0.00 0.00 2.90
591 592 2.508300 GGTAGGCTTTTCTCCCCATACA 59.492 50.000 0.00 0.00 0.00 2.29
592 593 2.508300 TGGTAGGCTTTTCTCCCCATAC 59.492 50.000 0.00 0.00 0.00 2.39
593 594 2.777692 CTGGTAGGCTTTTCTCCCCATA 59.222 50.000 0.00 0.00 0.00 2.74
594 595 1.566231 CTGGTAGGCTTTTCTCCCCAT 59.434 52.381 0.00 0.00 0.00 4.00
595 596 0.991920 CTGGTAGGCTTTTCTCCCCA 59.008 55.000 0.00 0.00 0.00 4.96
596 597 0.394488 GCTGGTAGGCTTTTCTCCCC 60.394 60.000 0.00 0.00 0.00 4.81
597 598 0.744771 CGCTGGTAGGCTTTTCTCCC 60.745 60.000 0.00 0.00 0.00 4.30
598 599 0.249398 TCGCTGGTAGGCTTTTCTCC 59.751 55.000 0.00 0.00 0.00 3.71
599 600 2.094762 TTCGCTGGTAGGCTTTTCTC 57.905 50.000 0.00 0.00 0.00 2.87
600 601 2.152016 GTTTCGCTGGTAGGCTTTTCT 58.848 47.619 0.00 0.00 0.00 2.52
601 602 1.877443 TGTTTCGCTGGTAGGCTTTTC 59.123 47.619 0.00 0.00 0.00 2.29
602 603 1.975660 TGTTTCGCTGGTAGGCTTTT 58.024 45.000 0.00 0.00 0.00 2.27
603 604 1.975660 TTGTTTCGCTGGTAGGCTTT 58.024 45.000 0.00 0.00 0.00 3.51
604 605 1.975660 TTTGTTTCGCTGGTAGGCTT 58.024 45.000 0.00 0.00 0.00 4.35
605 606 1.975660 TTTTGTTTCGCTGGTAGGCT 58.024 45.000 0.00 0.00 0.00 4.58
606 607 2.223618 TGTTTTTGTTTCGCTGGTAGGC 60.224 45.455 0.00 0.00 0.00 3.93
607 608 3.701532 TGTTTTTGTTTCGCTGGTAGG 57.298 42.857 0.00 0.00 0.00 3.18
608 609 4.859798 TGTTTGTTTTTGTTTCGCTGGTAG 59.140 37.500 0.00 0.00 0.00 3.18
609 610 4.806330 TGTTTGTTTTTGTTTCGCTGGTA 58.194 34.783 0.00 0.00 0.00 3.25
610 611 3.654414 TGTTTGTTTTTGTTTCGCTGGT 58.346 36.364 0.00 0.00 0.00 4.00
611 612 4.390501 GTTGTTTGTTTTTGTTTCGCTGG 58.609 39.130 0.00 0.00 0.00 4.85
612 613 4.071570 CGTTGTTTGTTTTTGTTTCGCTG 58.928 39.130 0.00 0.00 0.00 5.18
613 614 3.736759 ACGTTGTTTGTTTTTGTTTCGCT 59.263 34.783 0.00 0.00 0.00 4.93
614 615 3.830339 CACGTTGTTTGTTTTTGTTTCGC 59.170 39.130 0.00 0.00 0.00 4.70
615 616 5.061145 GTCACGTTGTTTGTTTTTGTTTCG 58.939 37.500 0.00 0.00 0.00 3.46
616 617 6.205337 AGTCACGTTGTTTGTTTTTGTTTC 57.795 33.333 0.00 0.00 0.00 2.78
617 618 7.201282 CGATAGTCACGTTGTTTGTTTTTGTTT 60.201 33.333 0.00 0.00 0.00 2.83
618 619 6.249682 CGATAGTCACGTTGTTTGTTTTTGTT 59.750 34.615 0.00 0.00 0.00 2.83
619 620 5.735427 CGATAGTCACGTTGTTTGTTTTTGT 59.265 36.000 0.00 0.00 0.00 2.83
620 621 6.168064 CGATAGTCACGTTGTTTGTTTTTG 57.832 37.500 0.00 0.00 0.00 2.44
644 645 1.839354 TGCATCAAGGGTGATAGCTCA 59.161 47.619 0.00 0.00 42.88 4.26
645 646 2.216898 GTGCATCAAGGGTGATAGCTC 58.783 52.381 0.00 5.64 42.88 4.09
646 647 1.561076 TGTGCATCAAGGGTGATAGCT 59.439 47.619 0.00 0.00 42.88 3.32
647 648 1.945394 CTGTGCATCAAGGGTGATAGC 59.055 52.381 0.00 0.00 42.88 2.97
648 649 1.945394 GCTGTGCATCAAGGGTGATAG 59.055 52.381 0.00 0.00 42.88 2.08
649 650 1.561076 AGCTGTGCATCAAGGGTGATA 59.439 47.619 0.00 0.00 42.88 2.15
650 651 0.330604 AGCTGTGCATCAAGGGTGAT 59.669 50.000 0.00 0.00 45.80 3.06
651 652 0.607217 CAGCTGTGCATCAAGGGTGA 60.607 55.000 5.25 0.00 38.41 4.02
652 653 0.607217 TCAGCTGTGCATCAAGGGTG 60.607 55.000 14.67 0.00 0.00 4.61
653 654 0.111061 TTCAGCTGTGCATCAAGGGT 59.889 50.000 14.67 0.00 0.00 4.34
654 655 1.134367 CATTCAGCTGTGCATCAAGGG 59.866 52.381 14.67 0.00 0.00 3.95
655 656 1.134367 CCATTCAGCTGTGCATCAAGG 59.866 52.381 14.67 0.70 0.00 3.61
656 657 1.816835 ACCATTCAGCTGTGCATCAAG 59.183 47.619 14.67 0.00 0.00 3.02
657 658 1.913778 ACCATTCAGCTGTGCATCAA 58.086 45.000 14.67 0.00 0.00 2.57
658 659 1.913778 AACCATTCAGCTGTGCATCA 58.086 45.000 14.67 0.00 0.00 3.07
659 660 4.439305 TTAAACCATTCAGCTGTGCATC 57.561 40.909 14.67 0.00 0.00 3.91
660 661 5.410355 AATTAAACCATTCAGCTGTGCAT 57.590 34.783 14.67 1.71 0.00 3.96
661 662 4.870123 AATTAAACCATTCAGCTGTGCA 57.130 36.364 14.67 0.00 0.00 4.57
662 663 5.928264 AGAAAATTAAACCATTCAGCTGTGC 59.072 36.000 14.67 0.00 0.00 4.57
663 664 9.294030 GATAGAAAATTAAACCATTCAGCTGTG 57.706 33.333 14.67 5.40 0.00 3.66
664 665 9.247861 AGATAGAAAATTAAACCATTCAGCTGT 57.752 29.630 14.67 0.00 0.00 4.40
696 697 9.561069 AGAATACCTCAATAGCGTATCATTTTT 57.439 29.630 0.00 0.00 0.00 1.94
697 698 9.209175 GAGAATACCTCAATAGCGTATCATTTT 57.791 33.333 0.00 0.00 41.58 1.82
698 699 7.542477 CGAGAATACCTCAATAGCGTATCATTT 59.458 37.037 0.00 0.00 42.06 2.32
699 700 7.030165 CGAGAATACCTCAATAGCGTATCATT 58.970 38.462 0.00 0.00 42.06 2.57
700 701 6.374613 TCGAGAATACCTCAATAGCGTATCAT 59.625 38.462 0.00 0.00 42.06 2.45
701 702 5.704053 TCGAGAATACCTCAATAGCGTATCA 59.296 40.000 0.00 0.00 42.06 2.15
702 703 6.179504 TCGAGAATACCTCAATAGCGTATC 57.820 41.667 0.00 0.00 42.06 2.24
703 704 6.430308 TCTTCGAGAATACCTCAATAGCGTAT 59.570 38.462 0.00 0.00 42.06 3.06
704 705 5.761726 TCTTCGAGAATACCTCAATAGCGTA 59.238 40.000 0.00 0.00 42.06 4.42
705 706 4.579340 TCTTCGAGAATACCTCAATAGCGT 59.421 41.667 0.00 0.00 42.06 5.07
706 707 5.109662 TCTTCGAGAATACCTCAATAGCG 57.890 43.478 0.00 0.00 42.06 4.26
707 708 7.772332 TTTTCTTCGAGAATACCTCAATAGC 57.228 36.000 0.00 0.00 42.06 2.97
708 709 8.821894 CCTTTTTCTTCGAGAATACCTCAATAG 58.178 37.037 0.00 0.00 42.06 1.73
709 710 8.537016 TCCTTTTTCTTCGAGAATACCTCAATA 58.463 33.333 0.00 0.00 42.06 1.90
710 711 7.334671 GTCCTTTTTCTTCGAGAATACCTCAAT 59.665 37.037 0.00 0.00 42.06 2.57
711 712 6.649557 GTCCTTTTTCTTCGAGAATACCTCAA 59.350 38.462 0.00 0.00 42.06 3.02
712 713 6.164176 GTCCTTTTTCTTCGAGAATACCTCA 58.836 40.000 0.00 0.00 42.06 3.86
713 714 5.288952 CGTCCTTTTTCTTCGAGAATACCTC 59.711 44.000 0.00 0.00 33.67 3.85
714 715 5.169295 CGTCCTTTTTCTTCGAGAATACCT 58.831 41.667 0.00 0.00 33.67 3.08
715 716 4.928020 ACGTCCTTTTTCTTCGAGAATACC 59.072 41.667 0.00 0.00 33.67 2.73
716 717 5.668132 GCACGTCCTTTTTCTTCGAGAATAC 60.668 44.000 0.00 0.00 33.67 1.89
717 718 4.387862 GCACGTCCTTTTTCTTCGAGAATA 59.612 41.667 0.00 0.00 33.67 1.75
718 719 3.186613 GCACGTCCTTTTTCTTCGAGAAT 59.813 43.478 0.00 0.00 33.67 2.40
719 720 2.542595 GCACGTCCTTTTTCTTCGAGAA 59.457 45.455 0.00 0.00 31.28 2.87
720 721 2.132762 GCACGTCCTTTTTCTTCGAGA 58.867 47.619 0.00 0.00 0.00 4.04
721 722 1.136611 CGCACGTCCTTTTTCTTCGAG 60.137 52.381 0.00 0.00 0.00 4.04
722 723 0.856641 CGCACGTCCTTTTTCTTCGA 59.143 50.000 0.00 0.00 0.00 3.71
723 724 0.721483 GCGCACGTCCTTTTTCTTCG 60.721 55.000 0.30 0.00 0.00 3.79
724 725 0.586802 AGCGCACGTCCTTTTTCTTC 59.413 50.000 11.47 0.00 0.00 2.87
725 726 1.873698 TAGCGCACGTCCTTTTTCTT 58.126 45.000 11.47 0.00 0.00 2.52
726 727 2.000447 GATAGCGCACGTCCTTTTTCT 59.000 47.619 11.47 0.00 0.00 2.52
727 728 1.266891 CGATAGCGCACGTCCTTTTTC 60.267 52.381 11.47 0.00 0.00 2.29
728 729 0.719465 CGATAGCGCACGTCCTTTTT 59.281 50.000 11.47 0.00 0.00 1.94
729 730 0.108992 TCGATAGCGCACGTCCTTTT 60.109 50.000 11.47 0.00 37.46 2.27
730 731 0.801067 GTCGATAGCGCACGTCCTTT 60.801 55.000 11.47 0.00 37.46 3.11
731 732 1.226603 GTCGATAGCGCACGTCCTT 60.227 57.895 11.47 0.00 37.46 3.36
732 733 2.408022 GTCGATAGCGCACGTCCT 59.592 61.111 11.47 0.00 37.46 3.85
733 734 2.609183 AAGGTCGATAGCGCACGTCC 62.609 60.000 21.57 21.57 37.81 4.79
734 735 1.201098 GAAGGTCGATAGCGCACGTC 61.201 60.000 11.47 10.06 37.46 4.34
735 736 1.226603 GAAGGTCGATAGCGCACGT 60.227 57.895 11.47 0.00 37.46 4.49
736 737 1.944676 GGAAGGTCGATAGCGCACG 60.945 63.158 11.47 12.84 37.46 5.34
737 738 0.872021 CTGGAAGGTCGATAGCGCAC 60.872 60.000 11.47 0.00 37.46 5.34
738 739 1.320344 ACTGGAAGGTCGATAGCGCA 61.320 55.000 11.47 0.00 39.30 6.09
739 740 0.872021 CACTGGAAGGTCGATAGCGC 60.872 60.000 0.00 0.00 39.30 5.92
740 741 0.738975 TCACTGGAAGGTCGATAGCG 59.261 55.000 0.00 0.00 39.30 4.26
741 742 2.815478 CTTCACTGGAAGGTCGATAGC 58.185 52.381 0.00 0.00 45.52 2.97
1328 1368 1.185618 AGCTTCCACGGTGTCTGCTA 61.186 55.000 14.28 0.00 0.00 3.49
1665 1705 1.138464 TCTCTCACAGCCATGCATCTC 59.862 52.381 0.00 0.00 0.00 2.75
2048 2088 7.558161 TCCAAACTAAGATTGTGCATATCAG 57.442 36.000 12.56 6.22 0.00 2.90
2629 2669 4.589216 AGGTACTACAAACACGCTAACA 57.411 40.909 0.00 0.00 36.02 2.41
3384 4615 5.048083 TGAAGTCATCAACAATTAACCAGGC 60.048 40.000 0.00 0.00 34.30 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.