Multiple sequence alignment - TraesCS5A01G067500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G067500 chr5A 100.000 6554 0 0 1 6554 74938803 74945356 0.000000e+00 12104.0
1 TraesCS5A01G067500 chr5A 86.525 141 17 2 187 326 573595881 573596020 3.160000e-33 154.0
2 TraesCS5A01G067500 chr5B 93.260 4629 194 54 613 5198 88347947 88352500 0.000000e+00 6711.0
3 TraesCS5A01G067500 chr5B 94.984 917 37 4 5179 6092 88353797 88354707 0.000000e+00 1430.0
4 TraesCS5A01G067500 chr5B 84.900 649 53 17 1 631 88347313 88347934 1.210000e-171 614.0
5 TraesCS5A01G067500 chr5B 91.635 263 12 4 6125 6382 88354709 88354966 8.080000e-94 355.0
6 TraesCS5A01G067500 chr5B 74.251 334 57 17 173 479 426386427 426386758 5.370000e-21 113.0
7 TraesCS5A01G067500 chr5D 92.947 2453 116 26 613 3048 78795299 78797711 0.000000e+00 3518.0
8 TraesCS5A01G067500 chr5D 89.487 780 53 13 4624 5378 78798986 78799761 0.000000e+00 959.0
9 TraesCS5A01G067500 chr5D 90.365 685 42 11 5396 6074 78799838 78800504 0.000000e+00 878.0
10 TraesCS5A01G067500 chr5D 86.902 794 71 17 3836 4624 78798251 78799016 0.000000e+00 859.0
11 TraesCS5A01G067500 chr5D 82.970 505 34 10 177 631 78794784 78795286 6.120000e-110 409.0
12 TraesCS5A01G067500 chr5D 87.500 240 20 4 6124 6358 78800769 78801003 1.080000e-67 268.0
13 TraesCS5A01G067500 chr4A 93.711 159 8 1 6384 6540 665604122 665604280 3.050000e-58 237.0
14 TraesCS5A01G067500 chr4A 94.872 39 0 2 3546 3584 473741279 473741315 7.100000e-05 60.2
15 TraesCS5A01G067500 chr3B 91.860 172 11 2 6372 6540 755167573 755167402 3.050000e-58 237.0
16 TraesCS5A01G067500 chr3B 78.082 365 45 19 173 509 659307408 659307765 1.440000e-46 198.0
17 TraesCS5A01G067500 chr3B 91.429 70 6 0 343 412 59219194 59219125 5.410000e-16 97.1
18 TraesCS5A01G067500 chr6D 93.082 159 9 1 6384 6540 218407374 218407216 1.420000e-56 231.0
19 TraesCS5A01G067500 chr6D 79.751 321 35 18 185 479 429902287 429901971 8.610000e-49 206.0
20 TraesCS5A01G067500 chr6D 84.932 146 15 6 173 318 401175607 401175745 2.460000e-29 141.0
21 TraesCS5A01G067500 chr6B 93.082 159 9 1 6384 6540 147089440 147089598 1.420000e-56 231.0
22 TraesCS5A01G067500 chr6B 78.840 293 35 13 187 454 648269975 648269685 8.740000e-39 172.0
23 TraesCS5A01G067500 chr4B 93.038 158 9 1 6384 6539 429241920 429242077 5.110000e-56 230.0
24 TraesCS5A01G067500 chr1D 92.593 162 9 2 6381 6540 412290065 412289905 5.110000e-56 230.0
25 TraesCS5A01G067500 chr1D 92.857 42 0 3 3544 3584 45510649 45510688 2.550000e-04 58.4
26 TraesCS5A01G067500 chr1D 100.000 28 0 0 327 354 484297462 484297489 1.200000e-02 52.8
27 TraesCS5A01G067500 chr6A 91.975 162 11 1 6381 6540 458217877 458217716 6.610000e-55 226.0
28 TraesCS5A01G067500 chr6A 96.970 33 1 0 322 354 599894631 599894663 1.000000e-03 56.5
29 TraesCS5A01G067500 chr7D 90.116 172 13 3 6384 6552 5492209 5492039 3.080000e-53 220.0
30 TraesCS5A01G067500 chr7B 90.533 169 12 3 6374 6540 281384677 281384511 3.080000e-53 220.0
31 TraesCS5A01G067500 chr3D 78.571 364 43 18 174 509 498486276 498486632 2.400000e-49 207.0
32 TraesCS5A01G067500 chr1B 78.552 373 39 20 173 508 328153549 328153181 2.400000e-49 207.0
33 TraesCS5A01G067500 chr3A 78.963 328 42 18 178 480 13336386 13336061 1.440000e-46 198.0
34 TraesCS5A01G067500 chr1A 77.989 368 40 22 173 505 296938613 296938252 6.710000e-45 193.0
35 TraesCS5A01G067500 chr2D 91.304 46 1 2 317 360 323545324 323545368 7.100000e-05 60.2
36 TraesCS5A01G067500 chr2A 100.000 31 0 0 3548 3578 618952019 618951989 2.550000e-04 58.4
37 TraesCS5A01G067500 chr4D 97.059 34 0 1 3548 3580 277280501 277280468 1.000000e-03 56.5
38 TraesCS5A01G067500 chr2B 96.970 33 1 0 322 354 7447165 7447133 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G067500 chr5A 74938803 74945356 6553 False 12104.0 12104 100.000000 1 6554 1 chr5A.!!$F1 6553
1 TraesCS5A01G067500 chr5B 88347313 88354966 7653 False 2277.5 6711 91.194750 1 6382 4 chr5B.!!$F2 6381
2 TraesCS5A01G067500 chr5D 78794784 78801003 6219 False 1148.5 3518 88.361833 177 6358 6 chr5D.!!$F1 6181

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
851 943 0.395173 AAACCCAGAACACAACGCCT 60.395 50.000 0.00 0.0 0.00 5.52 F
1291 1384 0.472161 CCCCTCTAGAACCCCTAGCC 60.472 65.000 0.00 0.0 43.60 3.93 F
1493 1588 1.000394 GCCGGTTTGGTGTATTTTGCT 60.000 47.619 1.90 0.0 41.21 3.91 F
3257 3378 0.116143 AGAGAGCCAGACCTGACCTT 59.884 55.000 0.00 0.0 0.00 3.50 F
3309 3430 0.447801 CAAGGATCCAAACTTCGGCG 59.552 55.000 15.82 0.0 0.00 6.46 F
4083 4216 0.611896 CATTCTTGGCCGAGGGGTTT 60.612 55.000 20.46 0.0 34.97 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2056 2158 0.751643 ACCAACAGCTCAACACCACC 60.752 55.000 0.00 0.0 0.00 4.61 R
2884 2997 0.411848 AGTTTGGGGTGGGGGTTATG 59.588 55.000 0.00 0.0 0.00 1.90 R
3289 3410 1.821216 GCCGAAGTTTGGATCCTTGA 58.179 50.000 13.84 0.0 0.00 3.02 R
4184 4319 1.393539 CATTACTCGAACCTTGCCACG 59.606 52.381 0.00 0.0 0.00 4.94 R
4381 4524 1.405821 AGCTCCGATTTAGTCTCACGG 59.594 52.381 0.00 0.0 44.09 4.94 R
6075 7623 0.038599 TGACATGGCCAGATGCAACT 59.961 50.000 13.05 0.0 43.89 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 1.449782 TGCGTTGGCAGAAGGAGAA 59.550 52.632 0.00 0.00 46.21 2.87
36 37 1.001406 CGTTGGCAGAAGGAGAAGAGT 59.999 52.381 0.00 0.00 0.00 3.24
40 41 1.138069 GGCAGAAGGAGAAGAGTAGCC 59.862 57.143 0.00 0.00 0.00 3.93
43 44 2.955660 CAGAAGGAGAAGAGTAGCCGAT 59.044 50.000 0.00 0.00 0.00 4.18
48 49 3.886505 AGGAGAAGAGTAGCCGATAGTTG 59.113 47.826 0.00 0.00 0.00 3.16
65 66 3.703921 AGTTGTACAAACAAGGTGGGTT 58.296 40.909 10.51 0.00 46.06 4.11
68 69 3.215975 TGTACAAACAAGGTGGGTTAGC 58.784 45.455 0.00 0.00 30.91 3.09
97 98 3.343788 GACACCACTCGGGCGAGAG 62.344 68.421 0.00 9.66 44.53 3.20
134 136 2.099427 GGGGAGACGTGTAAGATCTCAC 59.901 54.545 0.00 0.00 41.38 3.51
162 164 6.371595 AGGTGAGATAATGAGATCAATCCC 57.628 41.667 0.00 0.00 0.00 3.85
254 256 0.618458 GGGGCATGTCTACAGTTCCA 59.382 55.000 0.00 0.00 0.00 3.53
333 361 9.987272 TCGAATATGAAGATTGACACTATTCAT 57.013 29.630 16.73 16.73 41.91 2.57
591 653 3.370978 CAGTGGTGCATTTACCTCTTACG 59.629 47.826 0.00 0.00 41.31 3.18
720 811 4.555709 ACGTCAGCCGCCCAACAA 62.556 61.111 0.00 0.00 41.42 2.83
721 812 3.283684 CGTCAGCCGCCCAACAAA 61.284 61.111 0.00 0.00 0.00 2.83
722 813 2.335011 GTCAGCCGCCCAACAAAC 59.665 61.111 0.00 0.00 0.00 2.93
723 814 2.909965 TCAGCCGCCCAACAAACC 60.910 61.111 0.00 0.00 0.00 3.27
724 815 3.989787 CAGCCGCCCAACAAACCC 61.990 66.667 0.00 0.00 0.00 4.11
732 823 2.561037 CCAACAAACCCTCCACGGC 61.561 63.158 0.00 0.00 0.00 5.68
851 943 0.395173 AAACCCAGAACACAACGCCT 60.395 50.000 0.00 0.00 0.00 5.52
852 944 1.101049 AACCCAGAACACAACGCCTG 61.101 55.000 0.00 0.00 0.00 4.85
860 952 3.737172 ACAACGCCTGCGCAATCC 61.737 61.111 13.05 1.04 44.19 3.01
869 961 2.178273 GCGCAATCCCAACGAACC 59.822 61.111 0.30 0.00 0.00 3.62
873 965 1.501741 CAATCCCAACGAACCGCAG 59.498 57.895 0.00 0.00 0.00 5.18
1070 1162 2.033755 CGACTCCGACTCCGACACT 61.034 63.158 0.00 0.00 38.22 3.55
1243 1335 1.774217 TTCCCCAAGCCAGGTGAGT 60.774 57.895 0.00 0.00 0.00 3.41
1291 1384 0.472161 CCCCTCTAGAACCCCTAGCC 60.472 65.000 0.00 0.00 43.60 3.93
1443 1537 5.925969 GGTTTTGTCCTGTGGTTATCATTTG 59.074 40.000 0.00 0.00 0.00 2.32
1493 1588 1.000394 GCCGGTTTGGTGTATTTTGCT 60.000 47.619 1.90 0.00 41.21 3.91
1500 1595 4.582701 TTGGTGTATTTTGCTCAAGTGG 57.417 40.909 0.00 0.00 0.00 4.00
1629 1726 6.032042 CGAACAAAACGACAGCCATATTTTAC 59.968 38.462 0.00 0.00 0.00 2.01
1701 1800 7.766628 TGTATAGACCATACATCTCCTAGGTT 58.233 38.462 9.08 0.00 43.69 3.50
1702 1801 8.897692 TGTATAGACCATACATCTCCTAGGTTA 58.102 37.037 9.08 0.00 43.69 2.85
1703 1802 9.398538 GTATAGACCATACATCTCCTAGGTTAG 57.601 40.741 9.08 0.00 39.55 2.34
1704 1803 6.532119 AGACCATACATCTCCTAGGTTAGA 57.468 41.667 9.08 5.59 0.00 2.10
1705 1804 6.923670 AGACCATACATCTCCTAGGTTAGAA 58.076 40.000 9.08 0.00 0.00 2.10
1706 1805 6.778559 AGACCATACATCTCCTAGGTTAGAAC 59.221 42.308 9.08 0.00 0.00 3.01
1707 1806 6.684538 ACCATACATCTCCTAGGTTAGAACT 58.315 40.000 9.08 0.00 0.00 3.01
1880 1981 4.515567 ACTTGTGTAGGAAGCTAAGCAAAC 59.484 41.667 0.00 0.00 0.00 2.93
1956 2058 3.185880 AGGCTAGTGAACAGGGACTTA 57.814 47.619 0.00 0.00 34.60 2.24
1965 2067 4.825085 GTGAACAGGGACTTAAATTGTGGA 59.175 41.667 0.00 0.00 34.60 4.02
1966 2068 5.300792 GTGAACAGGGACTTAAATTGTGGAA 59.699 40.000 0.00 0.00 34.60 3.53
1991 2093 2.620585 GGAATTGATTCTGGCTGGTAGC 59.379 50.000 3.94 0.00 37.44 3.58
2024 2126 2.494870 AGTCATGCCCTGATTTTTCTGC 59.505 45.455 0.00 0.00 35.97 4.26
2056 2158 4.722194 CGACATGTGAACTATTGGTTTGG 58.278 43.478 1.15 0.00 38.41 3.28
2113 2215 4.383444 CCTTTAGAGCAGGATCATGTGTGA 60.383 45.833 9.42 0.00 39.04 3.58
2312 2414 5.973899 TGCTGGTAATGTGAAATTAAGCA 57.026 34.783 0.00 0.00 35.89 3.91
2544 2657 6.881065 TCTTTCAGTGCTTAATATGCAGAAGT 59.119 34.615 0.81 0.00 41.41 3.01
2668 2781 5.716228 TCTGGAATATGGCACTGACAAAATT 59.284 36.000 0.00 0.00 0.00 1.82
2781 2894 6.678900 GCCAAACTTATTGGTGAGCTTCTATG 60.679 42.308 8.84 0.00 41.53 2.23
2802 2915 6.854496 ATGTTCAGTTCTTAACGTGCTTTA 57.146 33.333 0.00 0.00 36.23 1.85
2850 2963 4.279671 TGCGTGAATGGAAAACCTTGTTAT 59.720 37.500 0.00 0.00 0.00 1.89
2939 3052 1.337447 CCACATGGAGCTTTTTGCCAG 60.337 52.381 0.00 0.00 44.23 4.85
2978 3091 1.079543 CCTCAAGTGCTCTCCCACG 60.080 63.158 0.00 0.00 40.59 4.94
2985 3098 2.041115 TGCTCTCCCACGTCTCTCG 61.041 63.158 0.00 0.00 46.00 4.04
3054 3167 8.768957 TTGAGATTTGAAATCTACACTGAGAG 57.231 34.615 19.45 0.00 0.00 3.20
3062 3175 4.870123 ATCTACACTGAGAGATGCATCC 57.130 45.455 23.06 14.22 31.09 3.51
3129 3242 0.702902 TCTAGACGGTTGGAGTCCCT 59.297 55.000 6.74 0.00 39.31 4.20
3140 3253 1.270907 GGAGTCCCTTGAGAGCTTCA 58.729 55.000 0.00 0.00 0.00 3.02
3147 3260 4.633565 GTCCCTTGAGAGCTTCATAGTTTG 59.366 45.833 0.00 0.00 35.27 2.93
3213 3334 2.217776 AGGAAAATACATGGGGCTCCT 58.782 47.619 3.07 0.00 0.00 3.69
3251 3372 1.212935 GAGAGAGAGAGAGCCAGACCT 59.787 57.143 0.00 0.00 0.00 3.85
3257 3378 0.116143 AGAGAGCCAGACCTGACCTT 59.884 55.000 0.00 0.00 0.00 3.50
3283 3404 1.408340 TCGGACACCTCAACACGTAAA 59.592 47.619 0.00 0.00 0.00 2.01
3289 3410 3.181448 ACACCTCAACACGTAAAATCCCT 60.181 43.478 0.00 0.00 0.00 4.20
3307 3428 2.359900 CCTCAAGGATCCAAACTTCGG 58.640 52.381 15.82 0.82 37.39 4.30
3309 3430 0.447801 CAAGGATCCAAACTTCGGCG 59.552 55.000 15.82 0.00 0.00 6.46
3319 3440 2.681152 AACTTCGGCGACAAATTGTC 57.319 45.000 10.16 15.62 43.65 3.18
3320 3441 0.872388 ACTTCGGCGACAAATTGTCC 59.128 50.000 19.16 12.11 44.20 4.02
3396 3517 1.066143 GGCCACTAGTTGCTTAGCTCA 60.066 52.381 17.59 0.00 0.00 4.26
3399 3520 4.503991 GGCCACTAGTTGCTTAGCTCATAT 60.504 45.833 17.59 0.00 0.00 1.78
3400 3521 5.279506 GGCCACTAGTTGCTTAGCTCATATA 60.280 44.000 17.59 0.00 0.00 0.86
3443 3564 7.496529 TGTGTGAGAGAACCTTTTAATTCTG 57.503 36.000 0.00 0.00 35.29 3.02
3446 3567 6.716628 TGTGAGAGAACCTTTTAATTCTGCAT 59.283 34.615 0.00 0.00 35.29 3.96
3606 3727 4.083324 GCCGACATCTTTGAACTTTGATCA 60.083 41.667 0.00 0.00 0.00 2.92
3607 3728 5.392380 GCCGACATCTTTGAACTTTGATCAT 60.392 40.000 0.00 0.00 0.00 2.45
3611 3732 9.611284 CGACATCTTTGAACTTTGATCATAAAA 57.389 29.630 0.00 0.00 0.00 1.52
3690 3823 6.673839 AGTTCCTTCTAAAACTAGCTGTCT 57.326 37.500 0.00 0.00 34.05 3.41
3813 3946 0.818040 ACAACCGACCAACTGCTTCC 60.818 55.000 0.00 0.00 0.00 3.46
3826 3959 1.194781 TGCTTCCCACCTGGACTCTC 61.195 60.000 0.00 0.00 45.11 3.20
3837 3970 2.685897 CCTGGACTCTCGGTTTCTAGAG 59.314 54.545 0.00 0.00 44.00 2.43
3921 4054 0.686441 AGCGCAGGTATGTGTAGGGA 60.686 55.000 11.47 0.00 39.23 4.20
3930 4063 1.330655 ATGTGTAGGGACAGCCGAGG 61.331 60.000 0.00 0.00 35.82 4.63
3931 4064 3.075005 TGTAGGGACAGCCGAGGC 61.075 66.667 5.89 5.89 42.33 4.70
4070 4203 2.827921 GAGCCCAAACATGTCCATTCTT 59.172 45.455 0.00 0.00 0.00 2.52
4083 4216 0.611896 CATTCTTGGCCGAGGGGTTT 60.612 55.000 20.46 0.00 34.97 3.27
4184 4319 9.237846 GCATATAGGTAAGAATTTTGTCTTTGC 57.762 33.333 0.00 0.00 38.75 3.68
4188 4323 4.679654 GGTAAGAATTTTGTCTTTGCGTGG 59.320 41.667 0.00 0.00 38.75 4.94
4222 4357 6.038356 AGTAATGTGCATTGAGCTATTTTGC 58.962 36.000 7.60 0.00 45.94 3.68
4295 4430 6.599244 CCCAATGTAAGCTTGATCACTTAAGA 59.401 38.462 9.86 0.00 30.53 2.10
4303 4438 5.128008 AGCTTGATCACTTAAGACTAGGGAC 59.872 44.000 10.09 0.00 0.00 4.46
4322 4457 4.583073 GGGACACTAATGTTCTGTTGGTTT 59.417 41.667 0.00 0.00 39.95 3.27
4323 4458 5.068591 GGGACACTAATGTTCTGTTGGTTTT 59.931 40.000 0.00 0.00 39.95 2.43
4324 4459 5.977129 GGACACTAATGTTCTGTTGGTTTTG 59.023 40.000 0.00 0.00 39.95 2.44
4325 4460 6.183360 GGACACTAATGTTCTGTTGGTTTTGA 60.183 38.462 0.00 0.00 39.95 2.69
4349 4492 7.444183 TGATGTCATCTTTTAACTTCTCCGTTT 59.556 33.333 13.90 0.00 0.00 3.60
4366 4509 6.014840 TCTCCGTTTGGGGATACACTAATATC 60.015 42.308 0.00 0.00 40.96 1.63
4381 4524 6.812160 ACACTAATATCGGTTCACTTCACTTC 59.188 38.462 0.00 0.00 0.00 3.01
4445 4588 4.683129 GCCCCTTAATGGCTTGTTATTTGG 60.683 45.833 8.52 0.00 45.70 3.28
4447 4590 4.162131 CCCTTAATGGCTTGTTATTTGGCT 59.838 41.667 0.00 0.00 0.00 4.75
4448 4591 5.338300 CCCTTAATGGCTTGTTATTTGGCTT 60.338 40.000 0.00 0.00 0.00 4.35
4449 4592 5.581874 CCTTAATGGCTTGTTATTTGGCTTG 59.418 40.000 0.00 0.00 0.00 4.01
4450 4593 4.622260 AATGGCTTGTTATTTGGCTTGT 57.378 36.364 0.00 0.00 0.00 3.16
4451 4594 4.622260 ATGGCTTGTTATTTGGCTTGTT 57.378 36.364 0.00 0.00 0.00 2.83
4452 4595 5.736951 ATGGCTTGTTATTTGGCTTGTTA 57.263 34.783 0.00 0.00 0.00 2.41
4453 4596 5.736951 TGGCTTGTTATTTGGCTTGTTAT 57.263 34.783 0.00 0.00 0.00 1.89
4454 4597 6.107901 TGGCTTGTTATTTGGCTTGTTATT 57.892 33.333 0.00 0.00 0.00 1.40
4455 4598 6.529220 TGGCTTGTTATTTGGCTTGTTATTT 58.471 32.000 0.00 0.00 0.00 1.40
4456 4599 7.671302 TGGCTTGTTATTTGGCTTGTTATTTA 58.329 30.769 0.00 0.00 0.00 1.40
4457 4600 8.317679 TGGCTTGTTATTTGGCTTGTTATTTAT 58.682 29.630 0.00 0.00 0.00 1.40
4458 4601 8.817100 GGCTTGTTATTTGGCTTGTTATTTATC 58.183 33.333 0.00 0.00 0.00 1.75
4459 4602 9.364989 GCTTGTTATTTGGCTTGTTATTTATCA 57.635 29.630 0.00 0.00 0.00 2.15
4515 4658 3.882444 GGTAACATACCTCCCAAGTTCC 58.118 50.000 0.00 0.00 45.52 3.62
4877 5024 5.766150 TGTTTAGGTGAACAGAACATTGG 57.234 39.130 0.00 0.00 34.77 3.16
4981 5131 6.833416 TGATAAGTAATCATTGGGAGGTTTGG 59.167 38.462 0.00 0.00 39.77 3.28
4984 5134 5.402630 AGTAATCATTGGGAGGTTTGGTTT 58.597 37.500 0.00 0.00 0.00 3.27
5123 5284 2.930682 GGATTAGACAGTTTCGTGCTCC 59.069 50.000 0.00 0.00 0.00 4.70
5178 5339 3.912496 ATGCCTAGTTCATGCACACTA 57.088 42.857 0.00 0.00 37.92 2.74
5283 6760 3.537580 AGTTCACCAGCGAAACACTTAA 58.462 40.909 0.00 0.00 0.00 1.85
5289 6766 3.492011 ACCAGCGAAACACTTAAACTACG 59.508 43.478 0.00 0.00 0.00 3.51
5438 6974 7.814107 TGCTTATCATCAGAATTTTGGTTTGTC 59.186 33.333 0.00 0.00 0.00 3.18
5544 7080 1.140589 CCTAGTGCAGGCAGACGAG 59.859 63.158 0.00 0.00 37.70 4.18
5675 7211 5.536161 TCTGGAGCTGCTCAATAAAAGTTTT 59.464 36.000 28.95 6.06 31.08 2.43
5740 7276 8.109634 AGACTTGATTGTTGTTCCCTGTAATAT 58.890 33.333 0.00 0.00 0.00 1.28
5951 7490 3.738830 TGTGGTGTCTGTACTTGGTAC 57.261 47.619 0.00 1.37 39.24 3.34
5972 7511 3.748048 ACACTCATGGATGTGTTTCTTCG 59.252 43.478 12.08 0.00 43.88 3.79
6005 7545 3.704061 GCCATGTTGGGTTATGGTTATGT 59.296 43.478 0.00 0.00 44.52 2.29
6036 7584 7.194607 AGTTTGATGTGTGTCTACTCAAATG 57.805 36.000 0.00 0.00 37.92 2.32
6037 7585 6.767902 AGTTTGATGTGTGTCTACTCAAATGT 59.232 34.615 0.00 0.00 37.92 2.71
6038 7586 7.931407 AGTTTGATGTGTGTCTACTCAAATGTA 59.069 33.333 0.00 0.00 37.92 2.29
6039 7587 7.652300 TTGATGTGTGTCTACTCAAATGTAC 57.348 36.000 0.00 0.00 34.37 2.90
6067 7615 2.421073 TGTACCATCTTAGTGTCGGTCG 59.579 50.000 0.00 0.00 0.00 4.79
6074 7622 4.611310 TCTTAGTGTCGGTCGAGTTATG 57.389 45.455 0.00 0.00 0.00 1.90
6075 7623 4.256110 TCTTAGTGTCGGTCGAGTTATGA 58.744 43.478 0.00 0.00 0.00 2.15
6092 7640 0.038599 TGAGTTGCATCTGGCCATGT 59.961 50.000 5.51 0.00 43.89 3.21
6093 7641 0.737219 GAGTTGCATCTGGCCATGTC 59.263 55.000 5.51 0.00 43.89 3.06
6094 7642 0.038599 AGTTGCATCTGGCCATGTCA 59.961 50.000 5.51 2.49 43.89 3.58
6095 7643 1.108776 GTTGCATCTGGCCATGTCAT 58.891 50.000 5.51 0.00 43.89 3.06
6096 7644 1.107945 TTGCATCTGGCCATGTCATG 58.892 50.000 5.51 7.82 43.89 3.07
6097 7645 1.362717 GCATCTGGCCATGTCATGC 59.637 57.895 18.16 18.16 36.11 4.06
6099 7647 1.527611 ATCTGGCCATGTCATGCGG 60.528 57.895 5.51 0.45 0.00 5.69
6109 7884 3.002656 CCATGTCATGCGGTTGATCTTAC 59.997 47.826 7.35 0.00 0.00 2.34
6114 7889 3.704566 TCATGCGGTTGATCTTACCTACT 59.295 43.478 13.44 0.00 33.35 2.57
6115 7890 3.795623 TGCGGTTGATCTTACCTACTC 57.204 47.619 13.44 3.88 33.35 2.59
6116 7891 2.429610 TGCGGTTGATCTTACCTACTCC 59.570 50.000 13.44 0.00 33.35 3.85
6117 7892 2.223994 GCGGTTGATCTTACCTACTCCC 60.224 54.545 13.44 0.00 33.35 4.30
6118 7893 3.297736 CGGTTGATCTTACCTACTCCCT 58.702 50.000 13.44 0.00 33.35 4.20
6119 7894 3.318557 CGGTTGATCTTACCTACTCCCTC 59.681 52.174 13.44 0.00 33.35 4.30
6120 7895 4.548669 GGTTGATCTTACCTACTCCCTCT 58.451 47.826 9.52 0.00 32.75 3.69
6121 7896 5.689564 CGGTTGATCTTACCTACTCCCTCTA 60.690 48.000 13.44 0.00 33.35 2.43
6122 7897 5.771165 GGTTGATCTTACCTACTCCCTCTAG 59.229 48.000 9.52 0.00 32.75 2.43
6123 7898 6.367161 GTTGATCTTACCTACTCCCTCTAGT 58.633 44.000 0.00 0.00 0.00 2.57
6141 7916 7.391620 CCTCTAGTACTTGTATGGTTGGAAAA 58.608 38.462 0.00 0.00 0.00 2.29
6279 8059 9.929180 TCATCATGCTATAATTGAACTACCTAC 57.071 33.333 0.00 0.00 0.00 3.18
6326 8106 6.935208 GGATACAGGAACTTCAGTAGTTTTGT 59.065 38.462 12.49 12.49 47.00 2.83
6375 8155 7.512130 TCTGAGCATGTATCATGGTCTATTTT 58.488 34.615 28.93 0.00 44.30 1.82
6388 8168 9.444600 TCATGGTCTATTTTTGTTAACTACTCC 57.555 33.333 7.22 0.00 0.00 3.85
6389 8169 8.674607 CATGGTCTATTTTTGTTAACTACTCCC 58.325 37.037 7.22 0.00 0.00 4.30
6390 8170 7.170277 TGGTCTATTTTTGTTAACTACTCCCC 58.830 38.462 7.22 0.00 0.00 4.81
6391 8171 6.600822 GGTCTATTTTTGTTAACTACTCCCCC 59.399 42.308 7.22 0.00 0.00 5.40
6392 8172 7.400439 GTCTATTTTTGTTAACTACTCCCCCT 58.600 38.462 7.22 0.00 0.00 4.79
6393 8173 7.336176 GTCTATTTTTGTTAACTACTCCCCCTG 59.664 40.741 7.22 0.00 0.00 4.45
6394 8174 5.391577 TTTTTGTTAACTACTCCCCCTGT 57.608 39.130 7.22 0.00 0.00 4.00
6395 8175 5.391577 TTTTGTTAACTACTCCCCCTGTT 57.608 39.130 7.22 0.00 0.00 3.16
6396 8176 4.628963 TTGTTAACTACTCCCCCTGTTC 57.371 45.455 7.22 0.00 0.00 3.18
6397 8177 2.908351 TGTTAACTACTCCCCCTGTTCC 59.092 50.000 7.22 0.00 0.00 3.62
6398 8178 2.238144 GTTAACTACTCCCCCTGTTCCC 59.762 54.545 0.00 0.00 0.00 3.97
6399 8179 0.195096 AACTACTCCCCCTGTTCCCA 59.805 55.000 0.00 0.00 0.00 4.37
6400 8180 0.195096 ACTACTCCCCCTGTTCCCAA 59.805 55.000 0.00 0.00 0.00 4.12
6401 8181 1.368374 CTACTCCCCCTGTTCCCAAA 58.632 55.000 0.00 0.00 0.00 3.28
6402 8182 1.923148 CTACTCCCCCTGTTCCCAAAT 59.077 52.381 0.00 0.00 0.00 2.32
6403 8183 2.068831 ACTCCCCCTGTTCCCAAATA 57.931 50.000 0.00 0.00 0.00 1.40
6404 8184 2.584773 ACTCCCCCTGTTCCCAAATAT 58.415 47.619 0.00 0.00 0.00 1.28
6405 8185 3.754976 ACTCCCCCTGTTCCCAAATATA 58.245 45.455 0.00 0.00 0.00 0.86
6406 8186 4.123745 ACTCCCCCTGTTCCCAAATATAA 58.876 43.478 0.00 0.00 0.00 0.98
6407 8187 4.168088 ACTCCCCCTGTTCCCAAATATAAG 59.832 45.833 0.00 0.00 0.00 1.73
6408 8188 4.123745 TCCCCCTGTTCCCAAATATAAGT 58.876 43.478 0.00 0.00 0.00 2.24
6409 8189 4.167307 TCCCCCTGTTCCCAAATATAAGTC 59.833 45.833 0.00 0.00 0.00 3.01
6410 8190 4.168088 CCCCCTGTTCCCAAATATAAGTCT 59.832 45.833 0.00 0.00 0.00 3.24
6411 8191 5.340863 CCCCCTGTTCCCAAATATAAGTCTT 60.341 44.000 0.00 0.00 0.00 3.01
6412 8192 6.194967 CCCCTGTTCCCAAATATAAGTCTTT 58.805 40.000 0.00 0.00 0.00 2.52
6413 8193 6.096846 CCCCTGTTCCCAAATATAAGTCTTTG 59.903 42.308 0.00 0.00 33.20 2.77
6414 8194 6.663523 CCCTGTTCCCAAATATAAGTCTTTGT 59.336 38.462 0.00 0.00 31.83 2.83
6415 8195 7.832187 CCCTGTTCCCAAATATAAGTCTTTGTA 59.168 37.037 0.00 0.00 31.83 2.41
6416 8196 8.893727 CCTGTTCCCAAATATAAGTCTTTGTAG 58.106 37.037 0.00 0.00 31.83 2.74
6417 8197 9.667107 CTGTTCCCAAATATAAGTCTTTGTAGA 57.333 33.333 0.00 0.00 31.83 2.59
6418 8198 9.667107 TGTTCCCAAATATAAGTCTTTGTAGAG 57.333 33.333 0.00 0.00 31.83 2.43
6419 8199 9.110502 GTTCCCAAATATAAGTCTTTGTAGAGG 57.889 37.037 0.00 0.00 31.83 3.69
6420 8200 8.388656 TCCCAAATATAAGTCTTTGTAGAGGT 57.611 34.615 0.00 0.00 31.83 3.85
6421 8201 8.832735 TCCCAAATATAAGTCTTTGTAGAGGTT 58.167 33.333 0.00 0.00 31.83 3.50
6422 8202 9.462606 CCCAAATATAAGTCTTTGTAGAGGTTT 57.537 33.333 0.00 0.00 31.83 3.27
6429 8209 9.793259 ATAAGTCTTTGTAGAGGTTTCAAATGA 57.207 29.630 0.00 0.00 32.04 2.57
6430 8210 8.519799 AAGTCTTTGTAGAGGTTTCAAATGAA 57.480 30.769 0.00 0.00 32.04 2.57
6431 8211 7.931275 AGTCTTTGTAGAGGTTTCAAATGAAC 58.069 34.615 0.00 0.00 33.13 3.18
6432 8212 7.775561 AGTCTTTGTAGAGGTTTCAAATGAACT 59.224 33.333 0.00 0.00 33.13 3.01
6433 8213 9.052759 GTCTTTGTAGAGGTTTCAAATGAACTA 57.947 33.333 0.00 0.00 33.13 2.24
6434 8214 9.052759 TCTTTGTAGAGGTTTCAAATGAACTAC 57.947 33.333 11.68 11.68 33.82 2.73
6435 8215 8.740123 TTTGTAGAGGTTTCAAATGAACTACA 57.260 30.769 15.03 15.03 37.74 2.74
6436 8216 8.740123 TTGTAGAGGTTTCAAATGAACTACAA 57.260 30.769 21.15 21.15 41.83 2.41
6437 8217 8.149973 TGTAGAGGTTTCAAATGAACTACAAC 57.850 34.615 15.98 4.82 37.16 3.32
6438 8218 7.771361 TGTAGAGGTTTCAAATGAACTACAACA 59.229 33.333 15.98 6.93 37.16 3.33
6439 8219 7.823745 AGAGGTTTCAAATGAACTACAACAT 57.176 32.000 0.00 0.00 33.13 2.71
6440 8220 8.918202 AGAGGTTTCAAATGAACTACAACATA 57.082 30.769 0.00 0.00 33.13 2.29
6441 8221 8.784043 AGAGGTTTCAAATGAACTACAACATAC 58.216 33.333 0.00 0.00 33.13 2.39
6442 8222 7.581476 AGGTTTCAAATGAACTACAACATACG 58.419 34.615 0.00 0.00 33.13 3.06
6443 8223 6.799925 GGTTTCAAATGAACTACAACATACGG 59.200 38.462 0.00 0.00 33.13 4.02
6444 8224 7.308109 GGTTTCAAATGAACTACAACATACGGA 60.308 37.037 0.00 0.00 33.13 4.69
6445 8225 7.915293 TTCAAATGAACTACAACATACGGAT 57.085 32.000 0.00 0.00 0.00 4.18
6446 8226 7.302350 TCAAATGAACTACAACATACGGATG 57.698 36.000 5.94 5.94 39.16 3.51
6448 8228 8.035984 TCAAATGAACTACAACATACGGATGTA 58.964 33.333 15.10 0.00 45.93 2.29
6449 8229 8.826710 CAAATGAACTACAACATACGGATGTAT 58.173 33.333 15.10 8.21 45.93 2.29
6451 8231 9.692749 AATGAACTACAACATACGGATGTATAG 57.307 33.333 22.07 22.07 45.93 1.31
6452 8232 8.454570 TGAACTACAACATACGGATGTATAGA 57.545 34.615 27.17 11.20 45.93 1.98
6453 8233 8.347771 TGAACTACAACATACGGATGTATAGAC 58.652 37.037 27.17 21.38 45.93 2.59
6454 8234 7.812690 ACTACAACATACGGATGTATAGACA 57.187 36.000 27.17 10.66 45.93 3.41
6456 8236 9.511272 ACTACAACATACGGATGTATAGACATA 57.489 33.333 27.17 9.38 46.64 2.29
6486 8266 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
6487 8267 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
6488 8268 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
6489 8269 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
6490 8270 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
6491 8271 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
6492 8272 5.525378 AGATTCACTCATTTTGCTCCGTATC 59.475 40.000 0.00 0.00 0.00 2.24
6493 8273 4.471904 TCACTCATTTTGCTCCGTATCT 57.528 40.909 0.00 0.00 0.00 1.98
6494 8274 5.592104 TCACTCATTTTGCTCCGTATCTA 57.408 39.130 0.00 0.00 0.00 1.98
6495 8275 5.592054 TCACTCATTTTGCTCCGTATCTAG 58.408 41.667 0.00 0.00 0.00 2.43
6496 8276 5.127194 TCACTCATTTTGCTCCGTATCTAGT 59.873 40.000 0.00 0.00 0.00 2.57
6497 8277 5.460419 CACTCATTTTGCTCCGTATCTAGTC 59.540 44.000 0.00 0.00 0.00 2.59
6498 8278 4.945246 TCATTTTGCTCCGTATCTAGTCC 58.055 43.478 0.00 0.00 0.00 3.85
6499 8279 3.814005 TTTTGCTCCGTATCTAGTCCC 57.186 47.619 0.00 0.00 0.00 4.46
6500 8280 2.750141 TTGCTCCGTATCTAGTCCCT 57.250 50.000 0.00 0.00 0.00 4.20
6501 8281 2.750141 TGCTCCGTATCTAGTCCCTT 57.250 50.000 0.00 0.00 0.00 3.95
6502 8282 2.307768 TGCTCCGTATCTAGTCCCTTG 58.692 52.381 0.00 0.00 0.00 3.61
6503 8283 2.308690 GCTCCGTATCTAGTCCCTTGT 58.691 52.381 0.00 0.00 0.00 3.16
6504 8284 2.694109 GCTCCGTATCTAGTCCCTTGTT 59.306 50.000 0.00 0.00 0.00 2.83
6505 8285 3.491104 GCTCCGTATCTAGTCCCTTGTTG 60.491 52.174 0.00 0.00 0.00 3.33
6506 8286 3.952323 CTCCGTATCTAGTCCCTTGTTGA 59.048 47.826 0.00 0.00 0.00 3.18
6507 8287 4.346730 TCCGTATCTAGTCCCTTGTTGAA 58.653 43.478 0.00 0.00 0.00 2.69
6508 8288 4.773674 TCCGTATCTAGTCCCTTGTTGAAA 59.226 41.667 0.00 0.00 0.00 2.69
6509 8289 5.424252 TCCGTATCTAGTCCCTTGTTGAAAT 59.576 40.000 0.00 0.00 0.00 2.17
6510 8290 5.753921 CCGTATCTAGTCCCTTGTTGAAATC 59.246 44.000 0.00 0.00 0.00 2.17
6511 8291 6.407074 CCGTATCTAGTCCCTTGTTGAAATCT 60.407 42.308 0.00 0.00 0.00 2.40
6512 8292 6.697892 CGTATCTAGTCCCTTGTTGAAATCTC 59.302 42.308 0.00 0.00 0.00 2.75
6513 8293 6.882768 ATCTAGTCCCTTGTTGAAATCTCT 57.117 37.500 0.00 0.00 0.00 3.10
6514 8294 7.979786 ATCTAGTCCCTTGTTGAAATCTCTA 57.020 36.000 0.00 0.00 0.00 2.43
6515 8295 7.792364 TCTAGTCCCTTGTTGAAATCTCTAA 57.208 36.000 0.00 0.00 0.00 2.10
6516 8296 8.202461 TCTAGTCCCTTGTTGAAATCTCTAAA 57.798 34.615 0.00 0.00 0.00 1.85
6517 8297 8.656806 TCTAGTCCCTTGTTGAAATCTCTAAAA 58.343 33.333 0.00 0.00 0.00 1.52
6518 8298 9.284968 CTAGTCCCTTGTTGAAATCTCTAAAAA 57.715 33.333 0.00 0.00 0.00 1.94
6519 8299 8.171164 AGTCCCTTGTTGAAATCTCTAAAAAG 57.829 34.615 0.00 0.00 0.00 2.27
6520 8300 7.231519 AGTCCCTTGTTGAAATCTCTAAAAAGG 59.768 37.037 0.00 0.00 33.07 3.11
6521 8301 6.015434 TCCCTTGTTGAAATCTCTAAAAAGGC 60.015 38.462 0.00 0.00 32.14 4.35
6522 8302 6.015095 CCCTTGTTGAAATCTCTAAAAAGGCT 60.015 38.462 0.00 0.00 32.14 4.58
6523 8303 7.436933 CCTTGTTGAAATCTCTAAAAAGGCTT 58.563 34.615 0.00 0.00 0.00 4.35
6524 8304 8.576442 CCTTGTTGAAATCTCTAAAAAGGCTTA 58.424 33.333 0.00 0.00 0.00 3.09
6533 8313 9.936329 AATCTCTAAAAAGGCTTATATTTGGGA 57.064 29.630 0.00 3.71 0.00 4.37
6534 8314 9.936329 ATCTCTAAAAAGGCTTATATTTGGGAA 57.064 29.630 0.00 0.00 0.00 3.97
6535 8315 9.185680 TCTCTAAAAAGGCTTATATTTGGGAAC 57.814 33.333 0.00 0.00 0.00 3.62
6536 8316 7.992008 TCTAAAAAGGCTTATATTTGGGAACG 58.008 34.615 0.00 0.00 0.00 3.95
6537 8317 5.592104 AAAAGGCTTATATTTGGGAACGG 57.408 39.130 0.00 0.00 0.00 4.44
6538 8318 4.513406 AAGGCTTATATTTGGGAACGGA 57.487 40.909 0.00 0.00 0.00 4.69
6539 8319 4.086706 AGGCTTATATTTGGGAACGGAG 57.913 45.455 0.00 0.00 0.00 4.63
6541 8321 4.657039 AGGCTTATATTTGGGAACGGAGTA 59.343 41.667 0.00 0.00 45.00 2.59
6542 8322 4.995487 GGCTTATATTTGGGAACGGAGTAG 59.005 45.833 0.00 0.00 45.00 2.57
6543 8323 4.451435 GCTTATATTTGGGAACGGAGTAGC 59.549 45.833 0.00 0.00 45.00 3.58
6544 8324 5.607477 CTTATATTTGGGAACGGAGTAGCA 58.393 41.667 0.00 0.00 45.00 3.49
6545 8325 2.871096 ATTTGGGAACGGAGTAGCAA 57.129 45.000 0.00 0.00 45.00 3.91
6546 8326 2.871096 TTTGGGAACGGAGTAGCAAT 57.129 45.000 0.00 0.00 45.00 3.56
6547 8327 3.985019 TTTGGGAACGGAGTAGCAATA 57.015 42.857 0.00 0.00 45.00 1.90
6548 8328 4.497291 TTTGGGAACGGAGTAGCAATAT 57.503 40.909 0.00 0.00 45.00 1.28
6549 8329 4.497291 TTGGGAACGGAGTAGCAATATT 57.503 40.909 0.00 0.00 45.00 1.28
6550 8330 3.804036 TGGGAACGGAGTAGCAATATTG 58.196 45.455 11.27 11.27 45.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.296392 TGCCAACGCAGATAGCTGT 59.704 52.632 10.15 0.00 44.17 4.40
6 7 4.206958 TGCCAACGCAGATAGCTG 57.793 55.556 2.90 2.90 41.12 4.24
32 33 5.184479 TGTTTGTACAACTATCGGCTACTCT 59.816 40.000 8.07 0.00 0.00 3.24
36 37 5.172934 CCTTGTTTGTACAACTATCGGCTA 58.827 41.667 8.07 0.00 39.29 3.93
40 41 4.153475 CCCACCTTGTTTGTACAACTATCG 59.847 45.833 8.07 0.00 39.29 2.92
43 44 4.506937 ACCCACCTTGTTTGTACAACTA 57.493 40.909 8.07 0.00 39.29 2.24
48 49 2.224784 CGCTAACCCACCTTGTTTGTAC 59.775 50.000 0.00 0.00 0.00 2.90
65 66 1.676678 GGTGTCAGATGCTCCCGCTA 61.677 60.000 0.00 0.00 36.97 4.26
68 69 1.448540 GTGGTGTCAGATGCTCCCG 60.449 63.158 0.00 0.00 0.00 5.14
75 76 2.982130 GCCCGAGTGGTGTCAGAT 59.018 61.111 0.00 0.00 36.04 2.90
97 98 2.801631 CCCAGGATGTCTCTCGGCC 61.802 68.421 0.00 0.00 0.00 6.13
221 223 3.055963 ACATGCCCCACATAAATGTTGTG 60.056 43.478 0.00 0.00 43.25 3.33
230 232 2.477245 ACTGTAGACATGCCCCACATA 58.523 47.619 0.00 0.00 36.64 2.29
313 315 9.987272 TCGAATATGAATAGTGTCAATCTTCAT 57.013 29.630 15.42 15.42 39.28 2.57
462 490 9.992910 CTCACATTGAATGAGATCGATTTTAAA 57.007 29.630 12.80 0.00 45.46 1.52
463 491 9.382275 TCTCACATTGAATGAGATCGATTTTAA 57.618 29.630 12.80 0.00 46.01 1.52
465 493 7.854557 TCTCACATTGAATGAGATCGATTTT 57.145 32.000 12.80 0.00 46.01 1.82
504 547 2.853430 TGGTGTACAGATAATGGGGGT 58.147 47.619 0.00 0.00 0.00 4.95
627 690 6.401903 CGTCTCGCGTAAAGGACATAGTATAT 60.402 42.308 5.77 0.00 35.54 0.86
631 694 2.223203 CGTCTCGCGTAAAGGACATAGT 60.223 50.000 5.77 0.00 35.54 2.12
632 695 2.373269 CGTCTCGCGTAAAGGACATAG 58.627 52.381 5.77 0.00 35.54 2.23
636 726 2.157073 GCCGTCTCGCGTAAAGGAC 61.157 63.158 16.44 12.01 39.32 3.85
713 804 1.901464 CCGTGGAGGGTTTGTTGGG 60.901 63.158 0.00 0.00 35.97 4.12
732 823 0.319900 CTTCGATATGTGGGCCCTCG 60.320 60.000 25.70 23.13 0.00 4.63
851 943 2.622011 GGTTCGTTGGGATTGCGCA 61.622 57.895 5.66 5.66 34.89 6.09
852 944 2.178273 GGTTCGTTGGGATTGCGC 59.822 61.111 0.00 0.00 0.00 6.09
860 952 1.433053 TTGTGACTGCGGTTCGTTGG 61.433 55.000 0.00 0.00 0.00 3.77
869 961 1.667830 ACCCGTCATTGTGACTGCG 60.668 57.895 8.30 0.00 44.85 5.18
873 965 0.953960 GTCCCACCCGTCATTGTGAC 60.954 60.000 0.07 0.07 43.65 3.67
1243 1335 1.519234 GAGGCATCGACGATGTGCA 60.519 57.895 32.08 0.00 41.60 4.57
1291 1384 4.183526 CGAGCGAGCAAGCGAACG 62.184 66.667 0.00 0.00 43.00 3.95
1390 1483 2.484417 CCACAGGGACTAGCATAGCTTG 60.484 54.545 0.00 0.00 44.39 4.01
1443 1537 3.254892 GCTGCTACCTGTGAAGTCTAAC 58.745 50.000 0.00 0.00 0.00 2.34
1493 1588 3.072330 TGGTTTACATCTGCTCCACTTGA 59.928 43.478 0.00 0.00 0.00 3.02
1500 1595 1.726853 AGCGTGGTTTACATCTGCTC 58.273 50.000 0.00 0.00 0.00 4.26
1589 1684 2.626840 TGTTCGATGCCATGATTTCGA 58.373 42.857 8.97 8.97 38.71 3.71
1629 1726 5.207768 CCAAACTTTCACGATTGTCTTGAG 58.792 41.667 0.00 0.00 0.00 3.02
1722 1821 9.456147 AATATGCTACAACACCAATTTACACTA 57.544 29.630 0.00 0.00 0.00 2.74
1880 1981 9.703892 CATTAAGAAATCTATGGTAGTCTCCTG 57.296 37.037 0.00 0.00 0.00 3.86
1923 2025 9.988815 CTGTTCACTAGCCTATAAATGATAAGT 57.011 33.333 0.00 0.00 0.00 2.24
1956 2058 7.604927 CAGAATCAATTCCATGTTCCACAATTT 59.395 33.333 0.00 0.00 37.51 1.82
1965 2067 3.449737 CCAGCCAGAATCAATTCCATGTT 59.550 43.478 0.00 0.00 37.51 2.71
1966 2068 3.028850 CCAGCCAGAATCAATTCCATGT 58.971 45.455 0.00 0.00 37.51 3.21
1991 2093 5.300034 TCAGGGCATGACTATAAGCAAATTG 59.700 40.000 0.00 0.00 31.12 2.32
2003 2105 2.494870 GCAGAAAAATCAGGGCATGACT 59.505 45.455 3.00 0.00 41.91 3.41
2008 2110 2.898612 TCATTGCAGAAAAATCAGGGCA 59.101 40.909 0.00 0.00 0.00 5.36
2024 2126 1.381522 TCACATGTCGCCCATCATTG 58.618 50.000 0.00 0.00 0.00 2.82
2056 2158 0.751643 ACCAACAGCTCAACACCACC 60.752 55.000 0.00 0.00 0.00 4.61
2312 2414 8.432013 AGGAAAATTAAAGACAAAAGGCATTCT 58.568 29.630 0.00 0.00 0.00 2.40
2365 2468 9.758651 ATTAACACCAGAGAAAATAAAAACCAC 57.241 29.630 0.00 0.00 0.00 4.16
2544 2657 9.290988 TGAAGTATACCTGTTCAATAAAAGCAA 57.709 29.630 0.00 0.00 0.00 3.91
2668 2781 1.001974 ACAGCTCCTACGTGCATTTCA 59.998 47.619 0.00 0.00 0.00 2.69
2781 2894 6.795593 GGAATAAAGCACGTTAAGAACTGAAC 59.204 38.462 0.00 0.00 0.00 3.18
2829 2942 6.442952 TGAATAACAAGGTTTTCCATTCACG 58.557 36.000 0.00 0.00 43.73 4.35
2850 2963 4.998671 TGCAACTCAAATGAACCTTGAA 57.001 36.364 0.00 0.00 32.57 2.69
2884 2997 0.411848 AGTTTGGGGTGGGGGTTATG 59.588 55.000 0.00 0.00 0.00 1.90
2939 3052 1.923356 TGAGGAACCAGGAAATTGGC 58.077 50.000 0.00 0.00 42.18 4.52
2978 3091 7.095102 GGATTATCACTAGGTACTTCGAGAGAC 60.095 44.444 0.00 0.00 41.84 3.36
2985 3098 8.466617 TCTCAAGGATTATCACTAGGTACTTC 57.533 38.462 0.00 0.00 41.75 3.01
3054 3167 3.204306 TGGAGATGAACTGGATGCATC 57.796 47.619 18.81 18.81 38.89 3.91
3062 3175 6.997239 TGATGAATCTTTGGAGATGAACTG 57.003 37.500 0.00 0.00 41.78 3.16
3129 3242 5.134202 TCGACAAACTATGAAGCTCTCAA 57.866 39.130 0.00 0.00 37.67 3.02
3140 3253 6.153000 ACTTGGTGAGTCTATCGACAAACTAT 59.847 38.462 0.00 0.00 42.73 2.12
3147 3260 4.557205 ACAAACTTGGTGAGTCTATCGAC 58.443 43.478 0.00 0.00 37.72 4.20
3159 3272 4.736473 ACCATAGCCTTTACAAACTTGGT 58.264 39.130 0.00 0.00 0.00 3.67
3199 3312 2.441001 CTCTCAAAGGAGCCCCATGTAT 59.559 50.000 0.00 0.00 41.13 2.29
3200 3313 1.839994 CTCTCAAAGGAGCCCCATGTA 59.160 52.381 0.00 0.00 41.13 2.29
3213 3334 6.438741 TCTCTCTCAAGCTTATTCCTCTCAAA 59.561 38.462 0.00 0.00 0.00 2.69
3289 3410 1.821216 GCCGAAGTTTGGATCCTTGA 58.179 50.000 13.84 0.00 0.00 3.02
3309 3430 3.139077 ACCAACGAGAGGACAATTTGTC 58.861 45.455 19.17 19.17 46.23 3.18
3319 3440 3.995048 GGAAAGAGTAAACCAACGAGAGG 59.005 47.826 0.00 0.00 0.00 3.69
3320 3441 3.673809 CGGAAAGAGTAAACCAACGAGAG 59.326 47.826 0.00 0.00 0.00 3.20
3399 3520 8.809066 TCACACAAAGCTAGGTAGAATAAACTA 58.191 33.333 0.00 0.00 0.00 2.24
3400 3521 7.676947 TCACACAAAGCTAGGTAGAATAAACT 58.323 34.615 0.00 0.00 0.00 2.66
3421 3542 6.061441 TGCAGAATTAAAAGGTTCTCTCACA 58.939 36.000 0.00 0.00 32.60 3.58
3686 3819 4.499019 GGTTTTCGCAGAAAAATCCAGACA 60.499 41.667 14.87 0.00 45.90 3.41
3690 3823 4.098654 TCAAGGTTTTCGCAGAAAAATCCA 59.901 37.500 14.87 0.75 45.90 3.41
3813 3946 0.037232 GAAACCGAGAGTCCAGGTGG 60.037 60.000 7.78 0.00 38.44 4.61
3826 3959 4.405196 GAAGTCGAGTTCTCTAGAAACCG 58.595 47.826 22.96 13.38 35.58 4.44
3837 3970 1.080025 CCGGGTGGAAGTCGAGTTC 60.080 63.158 22.31 22.31 37.49 3.01
3921 4054 1.153628 GTATGAACGCCTCGGCTGT 60.154 57.895 6.35 3.19 39.32 4.40
3930 4063 2.627945 TGATTGACCCAGTATGAACGC 58.372 47.619 0.00 0.00 39.69 4.84
3931 4064 4.273480 GGATTGATTGACCCAGTATGAACG 59.727 45.833 0.00 0.00 39.69 3.95
3937 4070 4.103153 GGATCTGGATTGATTGACCCAGTA 59.897 45.833 0.00 0.00 44.80 2.74
3958 4091 1.606601 CTGACCCAGACTGTCCGGA 60.607 63.158 11.65 0.00 32.44 5.14
4070 4203 2.543797 AATCCAAACCCCTCGGCCA 61.544 57.895 2.24 0.00 0.00 5.36
4083 4216 2.886913 TGTTTTCATCAGGCCAATCCA 58.113 42.857 5.01 0.00 37.29 3.41
4184 4319 1.393539 CATTACTCGAACCTTGCCACG 59.606 52.381 0.00 0.00 0.00 4.94
4188 4323 1.804151 TGCACATTACTCGAACCTTGC 59.196 47.619 0.00 0.00 0.00 4.01
4259 4394 7.390440 TCAAGCTTACATTGGGTGTATATATGC 59.610 37.037 0.00 0.00 42.63 3.14
4295 4430 5.280011 CCAACAGAACATTAGTGTCCCTAGT 60.280 44.000 0.00 0.00 37.67 2.57
4303 4438 7.202526 ACATCAAAACCAACAGAACATTAGTG 58.797 34.615 0.00 0.00 0.00 2.74
4322 4457 6.934645 ACGGAGAAGTTAAAAGATGACATCAA 59.065 34.615 17.57 0.22 0.00 2.57
4323 4458 6.464222 ACGGAGAAGTTAAAAGATGACATCA 58.536 36.000 17.57 0.00 0.00 3.07
4324 4459 6.969828 ACGGAGAAGTTAAAAGATGACATC 57.030 37.500 7.39 7.39 0.00 3.06
4325 4460 7.308589 CCAAACGGAGAAGTTAAAAGATGACAT 60.309 37.037 0.00 0.00 33.41 3.06
4349 4492 5.011329 GTGAACCGATATTAGTGTATCCCCA 59.989 44.000 0.00 0.00 0.00 4.96
4366 4509 3.284197 ACGGAAGTGAAGTGAACCG 57.716 52.632 0.00 0.00 46.97 4.44
4381 4524 1.405821 AGCTCCGATTTAGTCTCACGG 59.594 52.381 0.00 0.00 44.09 4.94
4386 4529 4.220821 TGAGTGAAAGCTCCGATTTAGTCT 59.779 41.667 0.00 0.00 34.74 3.24
4445 4588 8.034804 AGTGGGTTTTGATGATAAATAACAAGC 58.965 33.333 0.00 0.00 0.00 4.01
4447 4590 8.310382 CCAGTGGGTTTTGATGATAAATAACAA 58.690 33.333 0.00 0.00 0.00 2.83
4448 4591 7.093552 CCCAGTGGGTTTTGATGATAAATAACA 60.094 37.037 21.24 0.00 38.25 2.41
4449 4592 7.123547 TCCCAGTGGGTTTTGATGATAAATAAC 59.876 37.037 27.87 0.00 44.74 1.89
4450 4593 7.185565 TCCCAGTGGGTTTTGATGATAAATAA 58.814 34.615 27.87 0.00 44.74 1.40
4451 4594 6.736581 TCCCAGTGGGTTTTGATGATAAATA 58.263 36.000 27.87 0.00 44.74 1.40
4452 4595 5.588845 TCCCAGTGGGTTTTGATGATAAAT 58.411 37.500 27.87 0.00 44.74 1.40
4453 4596 5.004361 TCCCAGTGGGTTTTGATGATAAA 57.996 39.130 27.87 0.14 44.74 1.40
4454 4597 4.666412 TCCCAGTGGGTTTTGATGATAA 57.334 40.909 27.87 0.37 44.74 1.75
4455 4598 4.879295 ATCCCAGTGGGTTTTGATGATA 57.121 40.909 27.87 4.62 44.74 2.15
4456 4599 3.763557 ATCCCAGTGGGTTTTGATGAT 57.236 42.857 27.87 8.52 44.74 2.45
4457 4600 3.164268 CAATCCCAGTGGGTTTTGATGA 58.836 45.455 28.41 11.54 44.74 2.92
4458 4601 3.164268 TCAATCCCAGTGGGTTTTGATG 58.836 45.455 29.74 18.41 44.74 3.07
4459 4602 3.541242 TCAATCCCAGTGGGTTTTGAT 57.459 42.857 29.74 16.30 44.74 2.57
4460 4603 3.320610 TTCAATCCCAGTGGGTTTTGA 57.679 42.857 29.74 29.74 44.74 2.69
4477 4620 6.154203 TGTTACCATTTGAAAGTGCATTCA 57.846 33.333 0.00 0.00 37.53 2.57
4515 4658 3.788333 AATTGGACAGCATTCCATTCG 57.212 42.857 7.11 0.00 45.42 3.34
4554 4697 2.356135 CCTAAGGGTCACCAATTCACG 58.644 52.381 0.00 0.00 40.13 4.35
4984 5134 7.498570 TCATAGTTGCATGCATTAACTACATGA 59.501 33.333 25.54 23.42 43.04 3.07
5123 5284 2.419673 TGCACGAGGATAAAAGCACATG 59.580 45.455 0.00 0.00 0.00 3.21
5178 5339 2.371841 TCAGTCTGCTTGTACCAATGGT 59.628 45.455 10.81 10.81 40.16 3.55
5283 6760 4.632538 AAAACTGCAGAAAAGCGTAGTT 57.367 36.364 23.35 0.00 33.69 2.24
5318 6795 7.961326 AATTCATGACCTTAGGCAGTTAATT 57.039 32.000 0.00 0.00 0.00 1.40
5366 6843 8.571461 AGAATTCAGTTTTGCTCATAGATGAA 57.429 30.769 8.44 0.00 36.18 2.57
5438 6974 2.167075 GCAGAAGGGAAACATCATTGGG 59.833 50.000 0.00 0.00 0.00 4.12
5544 7080 6.480320 AGAGTCACAACTTGTTTCATACTGAC 59.520 38.462 0.00 0.00 35.28 3.51
5675 7211 9.807921 AGTTCCAGAAGGACAAATTTAAAGATA 57.192 29.630 0.00 0.00 45.73 1.98
5740 7276 6.214191 TGTTTTTGACAGAAATAAGCCACA 57.786 33.333 0.00 0.00 33.40 4.17
5902 7441 5.837438 TCTCAGATAAATGCAGGAGATCTGA 59.163 40.000 22.16 22.16 46.36 3.27
5951 7490 3.996363 TCGAAGAAACACATCCATGAGTG 59.004 43.478 10.18 10.18 41.40 3.51
5972 7511 1.137479 CCAACATGGCCAATGGTCATC 59.863 52.381 17.62 0.00 45.91 2.92
6005 7545 8.500753 AGTAGACACACATCAAACTACAAAAA 57.499 30.769 0.00 0.00 34.56 1.94
6047 7595 2.679837 TCGACCGACACTAAGATGGTAC 59.320 50.000 0.00 0.00 31.86 3.34
6057 7605 2.434428 ACTCATAACTCGACCGACACT 58.566 47.619 0.00 0.00 0.00 3.55
6067 7615 2.615912 GGCCAGATGCAACTCATAACTC 59.384 50.000 0.00 0.00 43.89 3.01
6074 7622 0.737219 GACATGGCCAGATGCAACTC 59.263 55.000 13.05 0.00 43.89 3.01
6075 7623 0.038599 TGACATGGCCAGATGCAACT 59.961 50.000 13.05 0.00 43.89 3.16
6092 7640 3.704566 AGTAGGTAAGATCAACCGCATGA 59.295 43.478 10.62 0.00 42.15 3.07
6093 7641 4.051922 GAGTAGGTAAGATCAACCGCATG 58.948 47.826 10.62 0.00 42.15 4.06
6094 7642 3.069729 GGAGTAGGTAAGATCAACCGCAT 59.930 47.826 10.62 2.45 42.15 4.73
6095 7643 2.429610 GGAGTAGGTAAGATCAACCGCA 59.570 50.000 10.62 2.25 42.15 5.69
6096 7644 2.223994 GGGAGTAGGTAAGATCAACCGC 60.224 54.545 10.62 8.47 42.15 5.68
6097 7645 3.297736 AGGGAGTAGGTAAGATCAACCG 58.702 50.000 10.62 0.00 42.15 4.44
6099 7647 6.367161 ACTAGAGGGAGTAGGTAAGATCAAC 58.633 44.000 0.00 0.00 0.00 3.18
6109 7884 6.005198 CCATACAAGTACTAGAGGGAGTAGG 58.995 48.000 0.00 0.00 32.56 3.18
6114 7889 4.960469 CCAACCATACAAGTACTAGAGGGA 59.040 45.833 0.00 0.00 0.00 4.20
6115 7890 4.960469 TCCAACCATACAAGTACTAGAGGG 59.040 45.833 0.00 0.00 0.00 4.30
6116 7891 6.540438 TTCCAACCATACAAGTACTAGAGG 57.460 41.667 0.00 0.00 0.00 3.69
6117 7892 9.099454 GATTTTCCAACCATACAAGTACTAGAG 57.901 37.037 0.00 0.00 0.00 2.43
6118 7893 8.044908 GGATTTTCCAACCATACAAGTACTAGA 58.955 37.037 0.00 0.00 36.28 2.43
6119 7894 7.282450 GGGATTTTCCAACCATACAAGTACTAG 59.718 40.741 0.00 0.00 38.64 2.57
6120 7895 7.114095 GGGATTTTCCAACCATACAAGTACTA 58.886 38.462 0.00 0.00 38.64 1.82
6121 7896 5.949952 GGGATTTTCCAACCATACAAGTACT 59.050 40.000 0.00 0.00 38.64 2.73
6122 7897 5.126545 GGGGATTTTCCAACCATACAAGTAC 59.873 44.000 0.00 0.00 38.64 2.73
6123 7898 5.222358 TGGGGATTTTCCAACCATACAAGTA 60.222 40.000 0.00 0.00 38.64 2.24
6141 7916 1.637553 AGTGCAATTCTGTCTGGGGAT 59.362 47.619 0.00 0.00 0.00 3.85
6168 7943 9.221933 TCGACCTGAGCAACTAATTTTTATTTA 57.778 29.630 0.00 0.00 0.00 1.40
6169 7944 8.106247 TCGACCTGAGCAACTAATTTTTATTT 57.894 30.769 0.00 0.00 0.00 1.40
6253 8028 9.929180 GTAGGTAGTTCAATTATAGCATGATGA 57.071 33.333 0.00 0.00 0.00 2.92
6279 8059 6.003950 TCCTTTGAAATTACCTTCTCACAGG 58.996 40.000 2.57 2.57 37.18 4.00
6297 8077 6.702329 ACTACTGAAGTTCCTGTATCCTTTG 58.298 40.000 0.00 0.00 33.35 2.77
6326 8106 9.312904 AGAAAGAAATGAAATTCCAACTGGATA 57.687 29.630 0.00 0.00 44.98 2.59
6375 8155 3.328637 GGAACAGGGGGAGTAGTTAACAA 59.671 47.826 8.61 0.00 0.00 2.83
6382 8162 1.368374 TTTGGGAACAGGGGGAGTAG 58.632 55.000 0.00 0.00 44.54 2.57
6383 8163 2.068831 ATTTGGGAACAGGGGGAGTA 57.931 50.000 0.00 0.00 44.54 2.59
6384 8164 2.068831 TATTTGGGAACAGGGGGAGT 57.931 50.000 0.00 0.00 44.54 3.85
6385 8165 4.168088 ACTTATATTTGGGAACAGGGGGAG 59.832 45.833 0.00 0.00 44.54 4.30
6386 8166 4.123745 ACTTATATTTGGGAACAGGGGGA 58.876 43.478 0.00 0.00 44.54 4.81
6387 8167 4.168088 AGACTTATATTTGGGAACAGGGGG 59.832 45.833 0.00 0.00 44.54 5.40
6388 8168 5.388599 AGACTTATATTTGGGAACAGGGG 57.611 43.478 0.00 0.00 44.54 4.79
6389 8169 6.663523 ACAAAGACTTATATTTGGGAACAGGG 59.336 38.462 3.08 0.00 40.62 4.45
6390 8170 7.703058 ACAAAGACTTATATTTGGGAACAGG 57.297 36.000 3.08 0.00 40.62 4.00
6391 8171 9.667107 TCTACAAAGACTTATATTTGGGAACAG 57.333 33.333 3.08 0.00 40.62 3.16
6392 8172 9.667107 CTCTACAAAGACTTATATTTGGGAACA 57.333 33.333 3.08 0.00 40.62 3.18
6393 8173 9.110502 CCTCTACAAAGACTTATATTTGGGAAC 57.889 37.037 3.08 0.00 40.62 3.62
6394 8174 8.832735 ACCTCTACAAAGACTTATATTTGGGAA 58.167 33.333 3.08 0.00 40.62 3.97
6395 8175 8.388656 ACCTCTACAAAGACTTATATTTGGGA 57.611 34.615 3.08 0.83 40.62 4.37
6396 8176 9.462606 AAACCTCTACAAAGACTTATATTTGGG 57.537 33.333 3.08 0.00 40.62 4.12
6403 8183 9.793259 TCATTTGAAACCTCTACAAAGACTTAT 57.207 29.630 0.00 0.00 37.04 1.73
6404 8184 9.621629 TTCATTTGAAACCTCTACAAAGACTTA 57.378 29.630 0.00 0.00 37.04 2.24
6405 8185 8.406297 GTTCATTTGAAACCTCTACAAAGACTT 58.594 33.333 0.00 0.00 37.04 3.01
6406 8186 7.775561 AGTTCATTTGAAACCTCTACAAAGACT 59.224 33.333 0.00 0.00 37.04 3.24
6407 8187 7.931275 AGTTCATTTGAAACCTCTACAAAGAC 58.069 34.615 0.00 0.00 37.04 3.01
6408 8188 9.052759 GTAGTTCATTTGAAACCTCTACAAAGA 57.947 33.333 11.16 0.00 37.04 2.52
6409 8189 8.836413 TGTAGTTCATTTGAAACCTCTACAAAG 58.164 33.333 14.29 0.00 37.16 2.77
6410 8190 8.740123 TGTAGTTCATTTGAAACCTCTACAAA 57.260 30.769 14.29 0.00 37.16 2.83
6411 8191 8.617809 GTTGTAGTTCATTTGAAACCTCTACAA 58.382 33.333 19.66 19.66 41.83 2.41
6412 8192 7.771361 TGTTGTAGTTCATTTGAAACCTCTACA 59.229 33.333 13.32 13.32 37.74 2.74
6413 8193 8.149973 TGTTGTAGTTCATTTGAAACCTCTAC 57.850 34.615 9.92 9.92 35.58 2.59
6414 8194 8.918202 ATGTTGTAGTTCATTTGAAACCTCTA 57.082 30.769 0.00 0.00 35.58 2.43
6415 8195 7.823745 ATGTTGTAGTTCATTTGAAACCTCT 57.176 32.000 0.00 0.00 35.58 3.69
6416 8196 7.744715 CGTATGTTGTAGTTCATTTGAAACCTC 59.255 37.037 0.00 0.00 35.58 3.85
6417 8197 7.308348 CCGTATGTTGTAGTTCATTTGAAACCT 60.308 37.037 0.00 0.00 35.58 3.50
6418 8198 6.799925 CCGTATGTTGTAGTTCATTTGAAACC 59.200 38.462 0.00 0.00 35.58 3.27
6419 8199 7.577979 TCCGTATGTTGTAGTTCATTTGAAAC 58.422 34.615 0.00 0.00 35.58 2.78
6420 8200 7.731882 TCCGTATGTTGTAGTTCATTTGAAA 57.268 32.000 0.00 0.00 35.58 2.69
6421 8201 7.389330 ACATCCGTATGTTGTAGTTCATTTGAA 59.611 33.333 0.00 0.00 44.07 2.69
6422 8202 6.876789 ACATCCGTATGTTGTAGTTCATTTGA 59.123 34.615 0.00 0.00 44.07 2.69
6423 8203 7.072177 ACATCCGTATGTTGTAGTTCATTTG 57.928 36.000 0.00 0.00 44.07 2.32
6424 8204 8.958119 ATACATCCGTATGTTGTAGTTCATTT 57.042 30.769 0.00 0.00 44.07 2.32
6425 8205 9.692749 CTATACATCCGTATGTTGTAGTTCATT 57.307 33.333 0.00 0.00 44.07 2.57
6426 8206 9.074576 TCTATACATCCGTATGTTGTAGTTCAT 57.925 33.333 0.00 0.00 44.07 2.57
6427 8207 8.347771 GTCTATACATCCGTATGTTGTAGTTCA 58.652 37.037 0.00 0.00 44.07 3.18
6428 8208 8.347771 TGTCTATACATCCGTATGTTGTAGTTC 58.652 37.037 0.00 2.93 44.07 3.01
6429 8209 8.229253 TGTCTATACATCCGTATGTTGTAGTT 57.771 34.615 0.00 0.00 44.07 2.24
6430 8210 7.812690 TGTCTATACATCCGTATGTTGTAGT 57.187 36.000 0.00 0.00 44.07 2.73
6464 8244 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
6465 8245 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
6466 8246 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
6467 8247 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
6468 8248 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
6469 8249 5.525378 AGATACGGAGCAAAATGAGTGAATC 59.475 40.000 0.00 0.00 0.00 2.52
6470 8250 5.431765 AGATACGGAGCAAAATGAGTGAAT 58.568 37.500 0.00 0.00 0.00 2.57
6471 8251 4.832248 AGATACGGAGCAAAATGAGTGAA 58.168 39.130 0.00 0.00 0.00 3.18
6472 8252 4.471904 AGATACGGAGCAAAATGAGTGA 57.528 40.909 0.00 0.00 0.00 3.41
6473 8253 5.352284 ACTAGATACGGAGCAAAATGAGTG 58.648 41.667 0.00 0.00 0.00 3.51
6474 8254 5.452077 GGACTAGATACGGAGCAAAATGAGT 60.452 44.000 0.00 0.00 0.00 3.41
6475 8255 4.985409 GGACTAGATACGGAGCAAAATGAG 59.015 45.833 0.00 0.00 0.00 2.90
6476 8256 4.202223 GGGACTAGATACGGAGCAAAATGA 60.202 45.833 0.00 0.00 0.00 2.57
6477 8257 4.058817 GGGACTAGATACGGAGCAAAATG 58.941 47.826 0.00 0.00 0.00 2.32
6478 8258 3.967987 AGGGACTAGATACGGAGCAAAAT 59.032 43.478 0.00 0.00 36.02 1.82
6479 8259 3.371965 AGGGACTAGATACGGAGCAAAA 58.628 45.455 0.00 0.00 36.02 2.44
6480 8260 3.028094 AGGGACTAGATACGGAGCAAA 57.972 47.619 0.00 0.00 36.02 3.68
6481 8261 2.693591 CAAGGGACTAGATACGGAGCAA 59.306 50.000 0.00 0.00 38.49 3.91
6482 8262 2.307768 CAAGGGACTAGATACGGAGCA 58.692 52.381 0.00 0.00 38.49 4.26
6483 8263 2.308690 ACAAGGGACTAGATACGGAGC 58.691 52.381 0.00 0.00 38.49 4.70
6484 8264 3.952323 TCAACAAGGGACTAGATACGGAG 59.048 47.826 0.00 0.00 38.49 4.63
6485 8265 3.972133 TCAACAAGGGACTAGATACGGA 58.028 45.455 0.00 0.00 38.49 4.69
6486 8266 4.730949 TTCAACAAGGGACTAGATACGG 57.269 45.455 0.00 0.00 38.49 4.02
6487 8267 6.574350 AGATTTCAACAAGGGACTAGATACG 58.426 40.000 0.00 0.00 38.49 3.06
6488 8268 7.787028 AGAGATTTCAACAAGGGACTAGATAC 58.213 38.462 0.00 0.00 38.49 2.24
6489 8269 7.979786 AGAGATTTCAACAAGGGACTAGATA 57.020 36.000 0.00 0.00 38.49 1.98
6490 8270 6.882768 AGAGATTTCAACAAGGGACTAGAT 57.117 37.500 0.00 0.00 38.49 1.98
6491 8271 7.792364 TTAGAGATTTCAACAAGGGACTAGA 57.208 36.000 0.00 0.00 38.49 2.43
6492 8272 8.848474 TTTTAGAGATTTCAACAAGGGACTAG 57.152 34.615 0.00 0.00 38.49 2.57
6493 8273 9.284968 CTTTTTAGAGATTTCAACAAGGGACTA 57.715 33.333 0.00 0.00 38.49 2.59
6495 8275 7.371159 CCTTTTTAGAGATTTCAACAAGGGAC 58.629 38.462 0.00 0.00 0.00 4.46
6496 8276 6.015434 GCCTTTTTAGAGATTTCAACAAGGGA 60.015 38.462 11.63 0.00 0.00 4.20
6497 8277 6.015095 AGCCTTTTTAGAGATTTCAACAAGGG 60.015 38.462 11.63 2.47 0.00 3.95
6498 8278 6.986250 AGCCTTTTTAGAGATTTCAACAAGG 58.014 36.000 8.03 8.03 0.00 3.61
6507 8287 9.936329 TCCCAAATATAAGCCTTTTTAGAGATT 57.064 29.630 0.00 0.00 0.00 2.40
6508 8288 9.936329 TTCCCAAATATAAGCCTTTTTAGAGAT 57.064 29.630 0.00 0.00 0.00 2.75
6509 8289 9.185680 GTTCCCAAATATAAGCCTTTTTAGAGA 57.814 33.333 0.00 0.00 0.00 3.10
6510 8290 8.129211 CGTTCCCAAATATAAGCCTTTTTAGAG 58.871 37.037 0.00 0.00 0.00 2.43
6511 8291 7.067737 CCGTTCCCAAATATAAGCCTTTTTAGA 59.932 37.037 0.00 0.00 0.00 2.10
6512 8292 7.067737 TCCGTTCCCAAATATAAGCCTTTTTAG 59.932 37.037 0.00 0.00 0.00 1.85
6513 8293 6.890814 TCCGTTCCCAAATATAAGCCTTTTTA 59.109 34.615 0.00 0.00 0.00 1.52
6514 8294 5.717654 TCCGTTCCCAAATATAAGCCTTTTT 59.282 36.000 0.00 0.00 0.00 1.94
6515 8295 5.265989 TCCGTTCCCAAATATAAGCCTTTT 58.734 37.500 0.00 0.00 0.00 2.27
6516 8296 4.862371 TCCGTTCCCAAATATAAGCCTTT 58.138 39.130 0.00 0.00 0.00 3.11
6517 8297 4.079958 ACTCCGTTCCCAAATATAAGCCTT 60.080 41.667 0.00 0.00 0.00 4.35
6518 8298 3.458487 ACTCCGTTCCCAAATATAAGCCT 59.542 43.478 0.00 0.00 0.00 4.58
6519 8299 3.816994 ACTCCGTTCCCAAATATAAGCC 58.183 45.455 0.00 0.00 0.00 4.35
6520 8300 4.451435 GCTACTCCGTTCCCAAATATAAGC 59.549 45.833 0.00 0.00 0.00 3.09
6521 8301 5.607477 TGCTACTCCGTTCCCAAATATAAG 58.393 41.667 0.00 0.00 0.00 1.73
6522 8302 5.617528 TGCTACTCCGTTCCCAAATATAA 57.382 39.130 0.00 0.00 0.00 0.98
6523 8303 5.617528 TTGCTACTCCGTTCCCAAATATA 57.382 39.130 0.00 0.00 0.00 0.86
6524 8304 4.497291 TTGCTACTCCGTTCCCAAATAT 57.503 40.909 0.00 0.00 0.00 1.28
6525 8305 3.985019 TTGCTACTCCGTTCCCAAATA 57.015 42.857 0.00 0.00 0.00 1.40
6526 8306 2.871096 TTGCTACTCCGTTCCCAAAT 57.129 45.000 0.00 0.00 0.00 2.32
6527 8307 2.871096 ATTGCTACTCCGTTCCCAAA 57.129 45.000 0.00 0.00 0.00 3.28
6528 8308 4.196193 CAATATTGCTACTCCGTTCCCAA 58.804 43.478 1.74 0.00 0.00 4.12
6529 8309 3.804036 CAATATTGCTACTCCGTTCCCA 58.196 45.455 1.74 0.00 0.00 4.37


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.