Multiple sequence alignment - TraesCS5A01G066400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G066400 chr5A 100.000 6761 0 0 1 6761 74111732 74104972 0.000000e+00 12486
1 TraesCS5A01G066400 chr5A 79.812 639 105 21 80 702 698613499 698614129 1.730000e-120 444
2 TraesCS5A01G066400 chr5A 83.523 176 29 0 5252 5427 74106418 74106243 1.510000e-36 165
3 TraesCS5A01G066400 chr5A 83.523 176 29 0 5315 5490 74106481 74106306 1.510000e-36 165
4 TraesCS5A01G066400 chr5D 95.095 2895 82 34 702 3581 77081167 77078318 0.000000e+00 4505
5 TraesCS5A01G066400 chr5D 91.793 1389 65 15 3612 4977 77078318 77076956 0.000000e+00 1888
6 TraesCS5A01G066400 chr5D 97.363 531 14 0 4897 5427 77076958 77076428 0.000000e+00 904
7 TraesCS5A01G066400 chr5D 88.177 702 67 8 5354 6052 77076564 77075876 0.000000e+00 822
8 TraesCS5A01G066400 chr5D 80.169 590 97 15 122 701 45510737 45510158 2.250000e-114 424
9 TraesCS5A01G066400 chr5B 97.074 2666 63 7 906 3562 86550405 86547746 0.000000e+00 4477
10 TraesCS5A01G066400 chr5B 93.497 2691 102 23 3440 6098 86547756 86545107 0.000000e+00 3932
11 TraesCS5A01G066400 chr5B 86.232 138 19 0 5353 5490 86545907 86545770 4.220000e-32 150
12 TraesCS5A01G066400 chr5B 92.708 96 7 0 5332 5427 86545802 86545707 9.140000e-29 139
13 TraesCS5A01G066400 chr3D 89.645 676 57 11 6098 6761 29708647 29709321 0.000000e+00 848
14 TraesCS5A01G066400 chr7D 88.158 684 59 9 6095 6761 234356347 234357025 0.000000e+00 795
15 TraesCS5A01G066400 chr7B 86.550 684 74 9 6095 6761 206345927 206346609 0.000000e+00 737
16 TraesCS5A01G066400 chr7B 79.656 639 106 16 78 701 546638037 546637408 8.050000e-119 438
17 TraesCS5A01G066400 chr7B 78.873 639 111 16 78 701 546549336 546548707 1.750000e-110 411
18 TraesCS5A01G066400 chr1B 85.881 687 75 12 6095 6761 393447758 393448442 0.000000e+00 712
19 TraesCS5A01G066400 chr6D 84.738 688 87 10 6091 6761 318950374 318951060 0.000000e+00 673
20 TraesCS5A01G066400 chr6D 77.778 630 124 14 75 702 448819670 448820285 2.300000e-99 374
21 TraesCS5A01G066400 chr1A 84.035 689 92 10 6091 6761 442464781 442464093 0.000000e+00 647
22 TraesCS5A01G066400 chr4B 83.866 688 94 9 6091 6761 282888066 282888753 2.060000e-179 640
23 TraesCS5A01G066400 chr6A 83.066 685 93 11 6094 6761 40614212 40614890 9.700000e-168 601
24 TraesCS5A01G066400 chr6A 84.314 561 63 7 6101 6644 55034761 55035313 6.010000e-145 525
25 TraesCS5A01G066400 chr6A 85.787 197 14 5 6099 6281 481078623 481078819 5.350000e-46 196
26 TraesCS5A01G066400 chr6A 92.079 101 8 0 6661 6761 55035714 55035814 7.070000e-30 143
27 TraesCS5A01G066400 chr7A 78.056 638 119 18 77 701 24862520 24861891 3.830000e-102 383
28 TraesCS5A01G066400 chr7A 78.025 628 122 16 83 702 121933977 121934596 1.380000e-101 381
29 TraesCS5A01G066400 chr7A 77.273 638 116 25 78 699 523725 524349 1.400000e-91 348
30 TraesCS5A01G066400 chr2B 78.584 565 108 12 141 702 202289900 202289346 1.790000e-95 361


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G066400 chr5A 74104972 74111732 6760 True 12486.00 12486 100.00000 1 6761 1 chr5A.!!$R1 6760
1 TraesCS5A01G066400 chr5A 698613499 698614129 630 False 444.00 444 79.81200 80 702 1 chr5A.!!$F1 622
2 TraesCS5A01G066400 chr5D 77075876 77081167 5291 True 2029.75 4505 93.10700 702 6052 4 chr5D.!!$R2 5350
3 TraesCS5A01G066400 chr5D 45510158 45510737 579 True 424.00 424 80.16900 122 701 1 chr5D.!!$R1 579
4 TraesCS5A01G066400 chr5B 86545107 86550405 5298 True 2174.50 4477 92.37775 906 6098 4 chr5B.!!$R1 5192
5 TraesCS5A01G066400 chr3D 29708647 29709321 674 False 848.00 848 89.64500 6098 6761 1 chr3D.!!$F1 663
6 TraesCS5A01G066400 chr7D 234356347 234357025 678 False 795.00 795 88.15800 6095 6761 1 chr7D.!!$F1 666
7 TraesCS5A01G066400 chr7B 206345927 206346609 682 False 737.00 737 86.55000 6095 6761 1 chr7B.!!$F1 666
8 TraesCS5A01G066400 chr7B 546637408 546638037 629 True 438.00 438 79.65600 78 701 1 chr7B.!!$R2 623
9 TraesCS5A01G066400 chr7B 546548707 546549336 629 True 411.00 411 78.87300 78 701 1 chr7B.!!$R1 623
10 TraesCS5A01G066400 chr1B 393447758 393448442 684 False 712.00 712 85.88100 6095 6761 1 chr1B.!!$F1 666
11 TraesCS5A01G066400 chr6D 318950374 318951060 686 False 673.00 673 84.73800 6091 6761 1 chr6D.!!$F1 670
12 TraesCS5A01G066400 chr6D 448819670 448820285 615 False 374.00 374 77.77800 75 702 1 chr6D.!!$F2 627
13 TraesCS5A01G066400 chr1A 442464093 442464781 688 True 647.00 647 84.03500 6091 6761 1 chr1A.!!$R1 670
14 TraesCS5A01G066400 chr4B 282888066 282888753 687 False 640.00 640 83.86600 6091 6761 1 chr4B.!!$F1 670
15 TraesCS5A01G066400 chr6A 40614212 40614890 678 False 601.00 601 83.06600 6094 6761 1 chr6A.!!$F1 667
16 TraesCS5A01G066400 chr6A 55034761 55035814 1053 False 334.00 525 88.19650 6101 6761 2 chr6A.!!$F3 660
17 TraesCS5A01G066400 chr7A 24861891 24862520 629 True 383.00 383 78.05600 77 701 1 chr7A.!!$R1 624
18 TraesCS5A01G066400 chr7A 121933977 121934596 619 False 381.00 381 78.02500 83 702 1 chr7A.!!$F2 619
19 TraesCS5A01G066400 chr7A 523725 524349 624 False 348.00 348 77.27300 78 699 1 chr7A.!!$F1 621
20 TraesCS5A01G066400 chr2B 202289346 202289900 554 True 361.00 361 78.58400 141 702 1 chr2B.!!$R1 561

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
64 65 0.044855 AGAACCACCTAGCCCCTGAT 59.955 55.000 0.0 0.0 0.00 2.90 F
1017 1069 0.108089 GGAAACTCCTCCCTTCTCGC 60.108 60.000 0.0 0.0 32.53 5.03 F
2628 2683 2.237143 TCAGAGGACAAATGCTGGTAGG 59.763 50.000 0.0 0.0 0.00 3.18 F
3819 3990 1.617850 CAAATTACCCACTGCCTTGCA 59.382 47.619 0.0 0.0 36.92 4.08 F
4804 5001 1.071471 AGTCACAGCCCCTCAAACG 59.929 57.895 0.0 0.0 0.00 3.60 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1641 1693 0.236449 CGTTTCCAGTTTGTACCCGC 59.764 55.0 0.0 0.0 0.00 6.13 R
2835 2890 2.227388 GCAAACCTGTCTCATGGTCTTG 59.773 50.0 0.0 0.0 35.17 3.02 R
4475 4672 0.318120 CTGGTTTGCCATGTTGGACC 59.682 55.0 0.0 0.0 45.05 4.46 R
5423 5761 0.106708 TCCAGCTATCGTGCCCATTC 59.893 55.0 0.0 0.0 0.00 2.67 R
6310 6665 0.534412 TAGCAGCTTGGAGAGAGCAC 59.466 55.0 0.0 0.0 42.56 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.761731 CTTCGAGTCAGATTTGGTGATATC 57.238 41.667 0.00 0.00 0.00 1.63
24 25 4.860072 TCGAGTCAGATTTGGTGATATCG 58.140 43.478 0.00 0.00 37.35 2.92
25 26 4.578928 TCGAGTCAGATTTGGTGATATCGA 59.421 41.667 0.00 8.43 40.10 3.59
26 27 4.914504 CGAGTCAGATTTGGTGATATCGAG 59.085 45.833 0.00 0.00 37.82 4.04
27 28 4.626042 AGTCAGATTTGGTGATATCGAGC 58.374 43.478 0.00 0.00 0.00 5.03
28 29 4.343526 AGTCAGATTTGGTGATATCGAGCT 59.656 41.667 0.00 0.00 0.00 4.09
29 30 4.683781 GTCAGATTTGGTGATATCGAGCTC 59.316 45.833 2.73 2.73 0.00 4.09
30 31 4.586421 TCAGATTTGGTGATATCGAGCTCT 59.414 41.667 12.85 0.00 0.00 4.09
31 32 5.069648 TCAGATTTGGTGATATCGAGCTCTT 59.930 40.000 12.85 1.48 0.00 2.85
32 33 6.265422 TCAGATTTGGTGATATCGAGCTCTTA 59.735 38.462 12.85 3.92 0.00 2.10
33 34 6.925718 CAGATTTGGTGATATCGAGCTCTTAA 59.074 38.462 12.85 0.00 0.00 1.85
34 35 7.439356 CAGATTTGGTGATATCGAGCTCTTAAA 59.561 37.037 12.85 0.00 0.00 1.52
35 36 8.153550 AGATTTGGTGATATCGAGCTCTTAAAT 58.846 33.333 12.85 2.82 0.00 1.40
36 37 7.715265 TTTGGTGATATCGAGCTCTTAAATC 57.285 36.000 12.85 9.71 0.00 2.17
37 38 6.405278 TGGTGATATCGAGCTCTTAAATCA 57.595 37.500 12.85 12.05 0.00 2.57
38 39 6.816136 TGGTGATATCGAGCTCTTAAATCAA 58.184 36.000 12.85 0.00 0.00 2.57
39 40 6.925718 TGGTGATATCGAGCTCTTAAATCAAG 59.074 38.462 12.85 0.00 35.38 3.02
40 41 6.128688 GGTGATATCGAGCTCTTAAATCAAGC 60.129 42.308 12.85 5.11 33.94 4.01
42 43 7.170658 GTGATATCGAGCTCTTAAATCAAGCTT 59.829 37.037 12.85 0.00 46.01 3.74
43 44 8.360390 TGATATCGAGCTCTTAAATCAAGCTTA 58.640 33.333 12.85 0.00 46.01 3.09
44 45 8.755696 ATATCGAGCTCTTAAATCAAGCTTAG 57.244 34.615 12.85 0.00 46.01 2.18
45 46 6.208988 TCGAGCTCTTAAATCAAGCTTAGA 57.791 37.500 12.85 0.00 46.01 2.10
46 47 6.269315 TCGAGCTCTTAAATCAAGCTTAGAG 58.731 40.000 12.85 14.69 46.01 2.43
47 48 6.095580 TCGAGCTCTTAAATCAAGCTTAGAGA 59.904 38.462 20.79 6.64 46.01 3.10
48 49 6.754209 CGAGCTCTTAAATCAAGCTTAGAGAA 59.246 38.462 20.79 3.59 46.01 2.87
49 50 7.253950 CGAGCTCTTAAATCAAGCTTAGAGAAC 60.254 40.741 20.79 13.52 46.01 3.01
50 51 6.821160 AGCTCTTAAATCAAGCTTAGAGAACC 59.179 38.462 20.79 7.45 43.67 3.62
51 52 6.595716 GCTCTTAAATCAAGCTTAGAGAACCA 59.404 38.462 20.79 0.00 33.94 3.67
52 53 7.413548 GCTCTTAAATCAAGCTTAGAGAACCAC 60.414 40.741 20.79 4.02 33.94 4.16
53 54 6.879458 TCTTAAATCAAGCTTAGAGAACCACC 59.121 38.462 0.00 0.00 33.94 4.61
54 55 4.917906 AATCAAGCTTAGAGAACCACCT 57.082 40.909 0.00 0.00 0.00 4.00
55 56 6.374417 AAATCAAGCTTAGAGAACCACCTA 57.626 37.500 0.00 0.00 0.00 3.08
56 57 5.606348 ATCAAGCTTAGAGAACCACCTAG 57.394 43.478 0.00 0.00 0.00 3.02
57 58 3.195825 TCAAGCTTAGAGAACCACCTAGC 59.804 47.826 0.00 0.00 0.00 3.42
58 59 2.112190 AGCTTAGAGAACCACCTAGCC 58.888 52.381 0.00 0.00 0.00 3.93
59 60 1.139256 GCTTAGAGAACCACCTAGCCC 59.861 57.143 0.00 0.00 0.00 5.19
60 61 1.763545 CTTAGAGAACCACCTAGCCCC 59.236 57.143 0.00 0.00 0.00 5.80
61 62 1.016415 TAGAGAACCACCTAGCCCCT 58.984 55.000 0.00 0.00 0.00 4.79
62 63 0.618968 AGAGAACCACCTAGCCCCTG 60.619 60.000 0.00 0.00 0.00 4.45
63 64 0.617820 GAGAACCACCTAGCCCCTGA 60.618 60.000 0.00 0.00 0.00 3.86
64 65 0.044855 AGAACCACCTAGCCCCTGAT 59.955 55.000 0.00 0.00 0.00 2.90
65 66 1.294068 AGAACCACCTAGCCCCTGATA 59.706 52.381 0.00 0.00 0.00 2.15
66 67 1.694696 GAACCACCTAGCCCCTGATAG 59.305 57.143 0.00 0.00 0.00 2.08
67 68 0.642710 ACCACCTAGCCCCTGATAGT 59.357 55.000 0.00 0.00 0.00 2.12
68 69 1.009675 ACCACCTAGCCCCTGATAGTT 59.990 52.381 0.00 0.00 0.00 2.24
69 70 1.694696 CCACCTAGCCCCTGATAGTTC 59.305 57.143 0.00 0.00 0.00 3.01
70 71 2.398588 CACCTAGCCCCTGATAGTTCA 58.601 52.381 0.00 0.00 0.00 3.18
113 114 3.020102 GCTTTACTGCGCCATTGTG 57.980 52.632 4.18 0.00 0.00 3.33
120 125 4.789075 GCGCCATTGTGCTGCTGG 62.789 66.667 0.00 0.72 44.66 4.85
123 128 1.368579 GCCATTGTGCTGCTGGTTT 59.631 52.632 0.00 0.00 32.42 3.27
130 150 5.750067 CCATTGTGCTGCTGGTTTATAATTC 59.250 40.000 0.00 0.00 0.00 2.17
135 155 8.292444 TGTGCTGCTGGTTTATAATTCTTTAT 57.708 30.769 0.00 0.00 32.75 1.40
179 202 9.946165 ATAAGGCGTATTAGTTATTTGAAAAGC 57.054 29.630 0.00 0.00 0.00 3.51
186 209 9.146984 GTATTAGTTATTTGAAAAGCCAAACCC 57.853 33.333 0.00 0.00 38.65 4.11
199 223 5.887214 AGCCAAACCCTTTAAATTTGACT 57.113 34.783 12.30 5.41 35.73 3.41
204 228 9.713713 GCCAAACCCTTTAAATTTGACTAAATA 57.286 29.630 12.30 0.00 35.50 1.40
307 331 2.959507 TAGTGGTGTGGATGTCGATG 57.040 50.000 0.00 0.00 0.00 3.84
320 344 1.266718 TGTCGATGTTTTTGGCTCTGC 59.733 47.619 0.00 0.00 0.00 4.26
387 413 6.313519 ACACCTTATAATTTGGAGCTGAGA 57.686 37.500 0.00 0.00 0.00 3.27
432 458 4.082125 GGGAGATGATGGAGTGTGTTTTT 58.918 43.478 0.00 0.00 0.00 1.94
433 459 4.156739 GGGAGATGATGGAGTGTGTTTTTC 59.843 45.833 0.00 0.00 0.00 2.29
439 465 7.707893 AGATGATGGAGTGTGTTTTTCTTTTTG 59.292 33.333 0.00 0.00 0.00 2.44
442 468 7.659390 TGATGGAGTGTGTTTTTCTTTTTGTTT 59.341 29.630 0.00 0.00 0.00 2.83
463 496 0.180642 TAGTGCGGTGTTTTGGTGGA 59.819 50.000 0.00 0.00 0.00 4.02
465 498 1.077357 TGCGGTGTTTTGGTGGACT 60.077 52.632 0.00 0.00 0.00 3.85
466 499 1.358759 GCGGTGTTTTGGTGGACTG 59.641 57.895 0.00 0.00 0.00 3.51
488 521 2.912771 TCACGGTGTGATTCTGTGTTT 58.087 42.857 8.17 0.00 41.34 2.83
492 525 4.509970 CACGGTGTGATTCTGTGTTTTCTA 59.490 41.667 0.00 0.00 37.40 2.10
508 541 9.562408 TGTGTTTTCTACTAATCAACCAATACA 57.438 29.630 0.00 0.00 0.00 2.29
516 549 9.996554 CTACTAATCAACCAATACATATGTGGA 57.003 33.333 18.81 0.00 36.23 4.02
532 567 9.010029 ACATATGTGGAAAAATTTTCTACGTCT 57.990 29.630 25.64 17.04 33.34 4.18
536 571 6.094325 TGTGGAAAAATTTTCTACGTCTGTGT 59.906 34.615 23.31 0.00 33.34 3.72
579 614 7.406799 TGCTACAATATCATATGTTGACGTG 57.593 36.000 10.56 3.03 37.11 4.49
584 619 7.909267 ACAATATCATATGTTGACGTGTCTTG 58.091 34.615 10.56 0.00 37.11 3.02
589 624 7.022055 TCATATGTTGACGTGTCTTGTTTTT 57.978 32.000 1.90 0.00 0.00 1.94
657 693 5.929992 CAGTTGCACCTGATTGATTTGAAAT 59.070 36.000 5.09 0.00 34.23 2.17
660 696 7.977853 AGTTGCACCTGATTGATTTGAAATATC 59.022 33.333 0.00 0.00 0.00 1.63
687 724 5.130292 ACAAGTCAAAATCATGAGCCAAG 57.870 39.130 0.09 0.00 0.00 3.61
722 759 0.874607 GACTTCAACTGACGTGGCGT 60.875 55.000 0.00 0.00 45.10 5.68
747 784 1.398390 CCACTGCTTTAGGATTCGTGC 59.602 52.381 0.00 0.00 0.00 5.34
756 793 1.198713 AGGATTCGTGCTGACCATCT 58.801 50.000 0.00 0.00 0.00 2.90
759 796 2.621338 GATTCGTGCTGACCATCTGAA 58.379 47.619 0.00 0.00 0.00 3.02
766 812 2.224281 TGCTGACCATCTGAAGTCGTTT 60.224 45.455 6.69 0.00 35.71 3.60
770 816 3.006430 TGACCATCTGAAGTCGTTTGCTA 59.994 43.478 6.69 0.00 35.71 3.49
781 827 1.083489 CGTTTGCTAGGAATCGCCAA 58.917 50.000 13.41 0.00 40.02 4.52
791 837 2.006888 GGAATCGCCAAAATCTGACGA 58.993 47.619 0.00 0.00 37.15 4.20
796 842 1.009829 GCCAAAATCTGACGATCGCT 58.990 50.000 16.60 2.00 0.00 4.93
797 843 2.201732 GCCAAAATCTGACGATCGCTA 58.798 47.619 16.60 3.10 0.00 4.26
802 848 5.570973 CCAAAATCTGACGATCGCTAGATAG 59.429 44.000 25.62 19.69 37.19 2.08
838 884 0.798159 TTCGCGAGCTGTCTACGTTA 59.202 50.000 9.59 0.00 0.00 3.18
844 890 3.481388 GCGAGCTGTCTACGTTATGTAAC 59.519 47.826 0.00 0.00 31.20 2.50
885 931 6.757897 TCCTGAAAATGCTGTGTTTATAGG 57.242 37.500 0.00 0.00 0.00 2.57
891 937 8.514594 TGAAAATGCTGTGTTTATAGGAAGAAG 58.485 33.333 0.00 0.00 0.00 2.85
902 950 6.737254 TTATAGGAAGAAGAAAAAGTGCCG 57.263 37.500 0.00 0.00 0.00 5.69
906 954 3.562557 GGAAGAAGAAAAAGTGCCGTGTA 59.437 43.478 0.00 0.00 0.00 2.90
1017 1069 0.108089 GGAAACTCCTCCCTTCTCGC 60.108 60.000 0.00 0.00 32.53 5.03
1370 1422 2.910688 TGGCTCGGTTTCTATGATCC 57.089 50.000 0.00 0.00 0.00 3.36
1413 1465 2.561733 TCTCACGATCTTCGCGATTT 57.438 45.000 10.88 0.00 45.12 2.17
1682 1734 5.446031 GGAACGGTCTTATAAGTTTGACG 57.554 43.478 12.19 12.08 0.00 4.35
1717 1769 3.003480 CCGACTTGTCAGAAAGGGAATC 58.997 50.000 1.59 0.00 0.00 2.52
1799 1851 7.801104 TGACTTATTGAGGCAATACCAAGATA 58.199 34.615 0.00 0.00 41.62 1.98
1803 1855 5.811399 TTGAGGCAATACCAAGATAAACG 57.189 39.130 0.00 0.00 43.14 3.60
2126 2179 4.520874 TCGCAAACATTCAGGGTCAAATTA 59.479 37.500 0.00 0.00 0.00 1.40
2209 2262 9.860898 AAAAAGGCTATTTCTAATTTAGCACAG 57.139 29.630 8.06 0.00 40.05 3.66
2337 2392 8.415950 TCAACAAACCCATTTTCATGTACTAT 57.584 30.769 0.00 0.00 0.00 2.12
2378 2433 8.333908 CAATAATGCTCACAGTATCAGAACTTC 58.666 37.037 0.00 0.00 36.09 3.01
2628 2683 2.237143 TCAGAGGACAAATGCTGGTAGG 59.763 50.000 0.00 0.00 0.00 3.18
2835 2890 7.526142 AAAGGGAAGAAATCTTTACAAGGAC 57.474 36.000 0.00 0.00 36.11 3.85
2970 3025 5.071788 TGAAAAGGAAAGAAGCAGAGTCCTA 59.928 40.000 0.00 0.00 37.75 2.94
3086 3141 6.374894 AGGTACGCCTCTAATACTATGACATC 59.625 42.308 0.00 0.00 42.67 3.06
3123 3178 9.778741 TGATAATCATAATGTAACTTCCTGGTC 57.221 33.333 0.00 0.00 0.00 4.02
3176 3231 6.644592 GTGATTTGTTTGCATTTTGGCTACTA 59.355 34.615 0.00 0.00 34.04 1.82
3217 3272 3.386932 AGTACCGTATCACCCACCTAA 57.613 47.619 0.00 0.00 0.00 2.69
3218 3273 3.919834 AGTACCGTATCACCCACCTAAT 58.080 45.455 0.00 0.00 0.00 1.73
3219 3274 5.065613 AGTACCGTATCACCCACCTAATA 57.934 43.478 0.00 0.00 0.00 0.98
3474 3643 9.912634 GATTGATTTGGAAGTCAAACTTATTGA 57.087 29.630 1.94 0.00 46.72 2.57
3767 3938 4.670896 ACTTGGAACTTTTTGACATGGG 57.329 40.909 0.00 0.00 0.00 4.00
3819 3990 1.617850 CAAATTACCCACTGCCTTGCA 59.382 47.619 0.00 0.00 36.92 4.08
3917 4111 2.439507 ACCAGCCTGAGTCTTTCTTTCA 59.560 45.455 0.00 0.00 0.00 2.69
3938 4132 2.981859 TAAAGATCTGCTTCGACCCC 57.018 50.000 0.00 0.00 35.24 4.95
3995 4189 1.900498 GGACTTGGCTGCAGCAGTT 60.900 57.895 37.63 19.86 44.36 3.16
4036 4230 2.647683 TGTGTGTCTGGCCACAAATA 57.352 45.000 0.00 0.00 46.22 1.40
4037 4231 3.153369 TGTGTGTCTGGCCACAAATAT 57.847 42.857 0.00 0.00 46.22 1.28
4038 4232 3.495331 TGTGTGTCTGGCCACAAATATT 58.505 40.909 0.00 0.00 46.22 1.28
4039 4233 3.894427 TGTGTGTCTGGCCACAAATATTT 59.106 39.130 0.00 0.00 46.22 1.40
4040 4234 4.343526 TGTGTGTCTGGCCACAAATATTTT 59.656 37.500 0.00 0.00 46.22 1.82
4041 4235 5.163364 TGTGTGTCTGGCCACAAATATTTTT 60.163 36.000 0.00 0.00 46.22 1.94
4285 4482 9.100197 ACTTACTATTGGATGTTGGGAATTTTT 57.900 29.630 0.00 0.00 0.00 1.94
4286 4483 9.369904 CTTACTATTGGATGTTGGGAATTTTTG 57.630 33.333 0.00 0.00 0.00 2.44
4294 4491 6.705825 GGATGTTGGGAATTTTTGGCATATAC 59.294 38.462 0.00 0.00 0.00 1.47
4298 4495 8.200792 TGTTGGGAATTTTTGGCATATACATAC 58.799 33.333 0.00 0.00 0.00 2.39
4300 4497 8.311395 TGGGAATTTTTGGCATATACATACAA 57.689 30.769 0.00 0.00 0.00 2.41
4338 4535 9.685828 TTGTTCCTAATGTATGCTTTTAACAAC 57.314 29.630 0.00 0.00 30.60 3.32
4339 4536 9.073475 TGTTCCTAATGTATGCTTTTAACAACT 57.927 29.630 0.00 0.00 0.00 3.16
4363 4560 7.829706 ACTTATTAGATTTGACAAAGGGAGGAC 59.170 37.037 6.77 0.00 0.00 3.85
4364 4561 5.576563 TTAGATTTGACAAAGGGAGGACA 57.423 39.130 6.77 0.00 0.00 4.02
4434 4631 8.587608 AGATATCTTCAAAACAAAATCCTGCAA 58.412 29.630 0.00 0.00 0.00 4.08
4445 4642 7.193377 ACAAAATCCTGCAATTCATTTGTTC 57.807 32.000 9.95 0.00 36.44 3.18
4475 4672 2.362717 GTTCCTCTATCAGGGTCCTTCG 59.637 54.545 0.00 0.00 43.67 3.79
4631 4828 4.079253 ACCCACAGGAACACAATAATCAC 58.921 43.478 0.00 0.00 36.73 3.06
4633 4830 3.126858 CCACAGGAACACAATAATCACCG 59.873 47.826 0.00 0.00 0.00 4.94
4749 4946 3.637998 ATGCAGTTCAACAGCAGAAAG 57.362 42.857 13.52 0.00 43.73 2.62
4804 5001 1.071471 AGTCACAGCCCCTCAAACG 59.929 57.895 0.00 0.00 0.00 3.60
5118 5393 3.374402 AGCGTCGTGGGACTCAGG 61.374 66.667 0.00 0.00 41.16 3.86
5385 5723 2.034878 AGCACGATAGCTGGAGAATGA 58.965 47.619 0.00 0.00 44.66 2.57
5386 5724 2.432146 AGCACGATAGCTGGAGAATGAA 59.568 45.455 0.00 0.00 44.66 2.57
5387 5725 2.541762 GCACGATAGCTGGAGAATGAAC 59.458 50.000 0.00 0.00 42.67 3.18
5388 5726 3.126831 CACGATAGCTGGAGAATGAACC 58.873 50.000 0.00 0.00 42.67 3.62
5389 5727 2.766263 ACGATAGCTGGAGAATGAACCA 59.234 45.455 0.00 0.00 42.67 3.67
5396 5734 3.423539 TGGAGAATGAACCAGAACCAG 57.576 47.619 0.00 0.00 0.00 4.00
5397 5735 2.711009 TGGAGAATGAACCAGAACCAGT 59.289 45.455 0.00 0.00 0.00 4.00
5398 5736 3.907474 TGGAGAATGAACCAGAACCAGTA 59.093 43.478 0.00 0.00 0.00 2.74
5399 5737 4.536090 TGGAGAATGAACCAGAACCAGTAT 59.464 41.667 0.00 0.00 0.00 2.12
5400 5738 5.119694 GGAGAATGAACCAGAACCAGTATC 58.880 45.833 0.00 0.00 0.00 2.24
5401 5739 5.338381 GGAGAATGAACCAGAACCAGTATCA 60.338 44.000 0.00 0.00 0.00 2.15
5402 5740 6.319048 AGAATGAACCAGAACCAGTATCAT 57.681 37.500 0.00 0.00 0.00 2.45
5403 5741 6.352516 AGAATGAACCAGAACCAGTATCATC 58.647 40.000 0.00 0.00 0.00 2.92
5404 5742 4.487714 TGAACCAGAACCAGTATCATCC 57.512 45.455 0.00 0.00 0.00 3.51
5405 5743 3.199946 TGAACCAGAACCAGTATCATCCC 59.800 47.826 0.00 0.00 0.00 3.85
5406 5744 2.127708 ACCAGAACCAGTATCATCCCC 58.872 52.381 0.00 0.00 0.00 4.81
5407 5745 2.126882 CCAGAACCAGTATCATCCCCA 58.873 52.381 0.00 0.00 0.00 4.96
5408 5746 2.105477 CCAGAACCAGTATCATCCCCAG 59.895 54.545 0.00 0.00 0.00 4.45
5409 5747 2.105477 CAGAACCAGTATCATCCCCAGG 59.895 54.545 0.00 0.00 0.00 4.45
5410 5748 2.022035 AGAACCAGTATCATCCCCAGGA 60.022 50.000 0.00 0.00 35.55 3.86
5411 5749 2.109229 ACCAGTATCATCCCCAGGAG 57.891 55.000 0.00 0.00 34.05 3.69
5412 5750 1.580658 ACCAGTATCATCCCCAGGAGA 59.419 52.381 0.00 0.00 34.05 3.71
5413 5751 2.022035 ACCAGTATCATCCCCAGGAGAA 60.022 50.000 0.00 0.00 34.05 2.87
5414 5752 2.370189 CCAGTATCATCCCCAGGAGAAC 59.630 54.545 0.00 0.00 34.05 3.01
5415 5753 2.370189 CAGTATCATCCCCAGGAGAACC 59.630 54.545 0.00 0.00 34.05 3.62
5416 5754 2.022035 AGTATCATCCCCAGGAGAACCA 60.022 50.000 0.00 0.00 38.94 3.67
5417 5755 2.219216 ATCATCCCCAGGAGAACCAT 57.781 50.000 0.00 0.00 38.94 3.55
5418 5756 1.511613 TCATCCCCAGGAGAACCATC 58.488 55.000 0.00 0.00 38.94 3.51
5419 5757 1.216064 CATCCCCAGGAGAACCATCA 58.784 55.000 0.00 0.00 38.94 3.07
5420 5758 1.779092 CATCCCCAGGAGAACCATCAT 59.221 52.381 0.00 0.00 38.94 2.45
5421 5759 1.511613 TCCCCAGGAGAACCATCATC 58.488 55.000 0.00 0.00 38.94 2.92
5422 5760 1.216064 CCCCAGGAGAACCATCATCA 58.784 55.000 0.00 0.00 38.94 3.07
5423 5761 1.142465 CCCCAGGAGAACCATCATCAG 59.858 57.143 0.00 0.00 38.94 2.90
5424 5762 2.121948 CCCAGGAGAACCATCATCAGA 58.878 52.381 0.00 0.00 38.94 3.27
5425 5763 2.507058 CCCAGGAGAACCATCATCAGAA 59.493 50.000 0.00 0.00 38.94 3.02
5426 5764 3.137913 CCCAGGAGAACCATCATCAGAAT 59.862 47.826 0.00 0.00 38.94 2.40
5427 5765 4.135306 CCAGGAGAACCATCATCAGAATG 58.865 47.826 0.00 0.00 38.94 2.67
5428 5766 4.135306 CAGGAGAACCATCATCAGAATGG 58.865 47.826 0.06 0.06 41.10 3.16
5429 5767 3.137913 AGGAGAACCATCATCAGAATGGG 59.862 47.826 6.15 0.00 39.68 4.00
5430 5768 2.883386 GAGAACCATCATCAGAATGGGC 59.117 50.000 6.15 0.00 39.68 5.36
5431 5769 2.242965 AGAACCATCATCAGAATGGGCA 59.757 45.455 6.15 0.00 39.68 5.36
5432 5770 2.062971 ACCATCATCAGAATGGGCAC 57.937 50.000 6.15 0.00 39.68 5.01
5433 5771 0.949397 CCATCATCAGAATGGGCACG 59.051 55.000 0.00 0.00 36.16 5.34
5434 5772 1.475571 CCATCATCAGAATGGGCACGA 60.476 52.381 0.00 0.00 36.16 4.35
5435 5773 2.501261 CATCATCAGAATGGGCACGAT 58.499 47.619 0.00 0.00 36.16 3.73
5436 5774 3.557686 CCATCATCAGAATGGGCACGATA 60.558 47.826 0.00 0.00 36.16 2.92
5437 5775 3.391506 TCATCAGAATGGGCACGATAG 57.608 47.619 0.00 0.00 38.76 2.08
5438 5776 1.802960 CATCAGAATGGGCACGATAGC 59.197 52.381 0.00 0.00 36.35 2.97
5439 5777 1.123077 TCAGAATGGGCACGATAGCT 58.877 50.000 0.00 0.00 36.35 3.32
5440 5778 1.202568 TCAGAATGGGCACGATAGCTG 60.203 52.381 0.00 0.00 36.35 4.24
5441 5779 0.107456 AGAATGGGCACGATAGCTGG 59.893 55.000 0.00 0.00 42.67 4.85
5442 5780 0.106708 GAATGGGCACGATAGCTGGA 59.893 55.000 0.00 0.00 42.67 3.86
5443 5781 0.107456 AATGGGCACGATAGCTGGAG 59.893 55.000 0.00 0.00 42.67 3.86
5444 5782 0.760567 ATGGGCACGATAGCTGGAGA 60.761 55.000 0.00 0.00 42.67 3.71
5445 5783 0.975556 TGGGCACGATAGCTGGAGAA 60.976 55.000 0.00 0.00 42.67 2.87
5446 5784 0.394565 GGGCACGATAGCTGGAGAAT 59.605 55.000 0.00 0.00 42.67 2.40
5447 5785 1.506493 GGCACGATAGCTGGAGAATG 58.494 55.000 0.00 0.00 42.67 2.67
5499 5837 4.407621 ACCATCATCAGAATTACCGGTACA 59.592 41.667 15.53 6.38 0.00 2.90
5599 5937 2.357836 CCATGGCAGCTGAAGGGT 59.642 61.111 20.43 0.00 0.00 4.34
5630 5968 4.556942 TTGTGCAGTCACTTGAGAATTG 57.443 40.909 0.00 0.00 43.49 2.32
5633 5971 3.188048 GTGCAGTCACTTGAGAATTGGAG 59.812 47.826 0.00 0.00 40.03 3.86
5638 5976 2.711009 TCACTTGAGAATTGGAGGGTGT 59.289 45.455 0.00 0.00 0.00 4.16
5716 6054 5.167845 GCTTCTTTCTTTTGGTTTGTCACA 58.832 37.500 0.00 0.00 0.00 3.58
5732 6070 7.173218 GGTTTGTCACACTCTTTTATCAGATGA 59.827 37.037 0.00 0.00 0.00 2.92
5734 6072 8.484641 TTGTCACACTCTTTTATCAGATGATC 57.515 34.615 0.00 0.00 36.05 2.92
5855 6193 9.025041 TGGAGATTAGAAGATATATTTCGCTGA 57.975 33.333 0.00 0.00 0.00 4.26
5942 6283 4.440839 AAAGAACTGGATTTTGATCCGC 57.559 40.909 1.37 0.00 43.62 5.54
5946 6287 0.028505 CTGGATTTTGATCCGCAGCG 59.971 55.000 8.18 8.18 43.62 5.18
5971 6312 1.128188 ACCAGCTCCTCCCGTTTCTT 61.128 55.000 0.00 0.00 0.00 2.52
5982 6323 4.159879 CCTCCCGTTTCTTGTGTACTAGAT 59.840 45.833 0.00 0.00 0.00 1.98
6056 6397 5.836024 TTTAGTCTGAACCCCTTATGTGT 57.164 39.130 0.00 0.00 0.00 3.72
6057 6398 3.983044 AGTCTGAACCCCTTATGTGTC 57.017 47.619 0.00 0.00 0.00 3.67
6058 6399 3.521727 AGTCTGAACCCCTTATGTGTCT 58.478 45.455 0.00 0.00 0.00 3.41
6059 6400 4.684724 AGTCTGAACCCCTTATGTGTCTA 58.315 43.478 0.00 0.00 0.00 2.59
6060 6401 4.466726 AGTCTGAACCCCTTATGTGTCTAC 59.533 45.833 0.00 0.00 0.00 2.59
6061 6402 4.222145 GTCTGAACCCCTTATGTGTCTACA 59.778 45.833 0.00 0.00 41.89 2.74
6233 6588 1.293924 CGATCTGGGTTTGCTAGCAG 58.706 55.000 18.45 5.23 0.00 4.24
6275 6630 5.874810 CCTATCTTCCGAAAGACAATGTTCA 59.125 40.000 0.00 0.00 44.13 3.18
6281 6636 6.721571 TCCGAAAGACAATGTTCAATCTAC 57.278 37.500 0.00 0.00 0.00 2.59
6283 6638 5.411361 CCGAAAGACAATGTTCAATCTACCA 59.589 40.000 0.00 0.00 0.00 3.25
6299 6654 0.835941 ACCATGCAGAAGCTCCCTAG 59.164 55.000 0.00 0.00 42.74 3.02
6302 6657 1.761784 CATGCAGAAGCTCCCTAGTCT 59.238 52.381 0.00 0.00 42.74 3.24
6310 6665 6.542370 GCAGAAGCTCCCTAGTCTCTATATAG 59.458 46.154 3.10 3.10 37.91 1.31
6338 6693 0.329596 CCAAGCTGCTAAAGGGGTCT 59.670 55.000 0.90 0.00 0.00 3.85
6486 6844 1.173913 GCATGGAGTTTTACGCCCTT 58.826 50.000 0.00 0.00 37.25 3.95
6487 6845 1.135402 GCATGGAGTTTTACGCCCTTG 60.135 52.381 0.00 0.00 37.25 3.61
6568 6926 0.605050 TGGCTACAAACGCAGCATCA 60.605 50.000 0.00 0.00 39.63 3.07
6586 6944 4.787598 CATCAGTGTTAACTTTCAGCCAC 58.212 43.478 7.22 0.00 32.98 5.01
6593 6951 1.145571 AACTTTCAGCCACCCCACTA 58.854 50.000 0.00 0.00 0.00 2.74
6638 7066 2.286872 CTGCATGACTTGGTCCAGATC 58.713 52.381 0.00 0.00 0.00 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.400782 CGATATCACCAAATCTGACTCGAAG 59.599 44.000 3.12 0.00 32.08 3.79
3 4 4.860072 TCGATATCACCAAATCTGACTCG 58.140 43.478 3.12 0.00 31.85 4.18
8 9 4.880759 AGAGCTCGATATCACCAAATCTG 58.119 43.478 8.37 0.00 0.00 2.90
9 10 5.543507 AAGAGCTCGATATCACCAAATCT 57.456 39.130 8.37 0.00 0.00 2.40
10 11 7.715265 TTTAAGAGCTCGATATCACCAAATC 57.285 36.000 8.37 0.00 0.00 2.17
11 12 7.933577 TGATTTAAGAGCTCGATATCACCAAAT 59.066 33.333 8.37 3.69 0.00 2.32
12 13 7.272244 TGATTTAAGAGCTCGATATCACCAAA 58.728 34.615 8.37 0.00 0.00 3.28
13 14 6.816136 TGATTTAAGAGCTCGATATCACCAA 58.184 36.000 8.37 0.00 0.00 3.67
14 15 6.405278 TGATTTAAGAGCTCGATATCACCA 57.595 37.500 8.37 0.00 0.00 4.17
15 16 6.128688 GCTTGATTTAAGAGCTCGATATCACC 60.129 42.308 17.89 11.71 38.76 4.02
16 17 6.644592 AGCTTGATTTAAGAGCTCGATATCAC 59.355 38.462 17.89 11.38 42.80 3.06
17 18 6.753180 AGCTTGATTTAAGAGCTCGATATCA 58.247 36.000 8.37 13.13 42.80 2.15
18 19 7.650834 AAGCTTGATTTAAGAGCTCGATATC 57.349 36.000 8.37 10.84 45.42 1.63
19 20 8.580720 TCTAAGCTTGATTTAAGAGCTCGATAT 58.419 33.333 9.86 1.23 45.42 1.63
20 21 7.941919 TCTAAGCTTGATTTAAGAGCTCGATA 58.058 34.615 9.86 2.99 45.42 2.92
21 22 6.810911 TCTAAGCTTGATTTAAGAGCTCGAT 58.189 36.000 9.86 4.07 45.42 3.59
22 23 6.095580 TCTCTAAGCTTGATTTAAGAGCTCGA 59.904 38.462 9.86 0.00 45.42 4.04
23 24 6.269315 TCTCTAAGCTTGATTTAAGAGCTCG 58.731 40.000 9.86 0.00 45.42 5.03
24 25 7.011016 GGTTCTCTAAGCTTGATTTAAGAGCTC 59.989 40.741 9.86 5.27 45.42 4.09
26 27 6.595716 TGGTTCTCTAAGCTTGATTTAAGAGC 59.404 38.462 9.86 4.86 38.76 4.09
27 28 7.065204 GGTGGTTCTCTAAGCTTGATTTAAGAG 59.935 40.741 9.86 12.01 38.76 2.85
28 29 6.879458 GGTGGTTCTCTAAGCTTGATTTAAGA 59.121 38.462 9.86 1.38 38.76 2.10
29 30 6.881602 AGGTGGTTCTCTAAGCTTGATTTAAG 59.118 38.462 9.86 0.00 39.49 1.85
30 31 6.779860 AGGTGGTTCTCTAAGCTTGATTTAA 58.220 36.000 9.86 0.00 34.13 1.52
31 32 6.374417 AGGTGGTTCTCTAAGCTTGATTTA 57.626 37.500 9.86 0.00 34.13 1.40
32 33 5.248380 AGGTGGTTCTCTAAGCTTGATTT 57.752 39.130 9.86 0.00 34.13 2.17
33 34 4.917906 AGGTGGTTCTCTAAGCTTGATT 57.082 40.909 9.86 0.00 34.13 2.57
34 35 4.141824 GCTAGGTGGTTCTCTAAGCTTGAT 60.142 45.833 9.86 0.00 34.13 2.57
35 36 3.195825 GCTAGGTGGTTCTCTAAGCTTGA 59.804 47.826 9.86 3.84 34.13 3.02
36 37 3.526534 GCTAGGTGGTTCTCTAAGCTTG 58.473 50.000 9.86 0.00 34.13 4.01
37 38 2.502130 GGCTAGGTGGTTCTCTAAGCTT 59.498 50.000 3.48 3.48 34.13 3.74
38 39 2.112190 GGCTAGGTGGTTCTCTAAGCT 58.888 52.381 0.00 0.00 34.13 3.74
39 40 1.139256 GGGCTAGGTGGTTCTCTAAGC 59.861 57.143 0.00 0.00 0.00 3.09
40 41 1.763545 GGGGCTAGGTGGTTCTCTAAG 59.236 57.143 0.00 0.00 0.00 2.18
41 42 1.365028 AGGGGCTAGGTGGTTCTCTAA 59.635 52.381 0.00 0.00 0.00 2.10
42 43 1.016415 AGGGGCTAGGTGGTTCTCTA 58.984 55.000 0.00 0.00 0.00 2.43
43 44 0.618968 CAGGGGCTAGGTGGTTCTCT 60.619 60.000 0.00 0.00 0.00 3.10
44 45 0.617820 TCAGGGGCTAGGTGGTTCTC 60.618 60.000 0.00 0.00 0.00 2.87
45 46 0.044855 ATCAGGGGCTAGGTGGTTCT 59.955 55.000 0.00 0.00 0.00 3.01
46 47 1.694696 CTATCAGGGGCTAGGTGGTTC 59.305 57.143 0.00 0.00 0.00 3.62
47 48 1.009675 ACTATCAGGGGCTAGGTGGTT 59.990 52.381 0.00 0.00 0.00 3.67
48 49 0.642710 ACTATCAGGGGCTAGGTGGT 59.357 55.000 0.00 0.00 0.00 4.16
49 50 1.694696 GAACTATCAGGGGCTAGGTGG 59.305 57.143 0.00 0.00 0.00 4.61
50 51 2.398588 TGAACTATCAGGGGCTAGGTG 58.601 52.381 0.00 0.00 0.00 4.00
51 52 2.868964 TGAACTATCAGGGGCTAGGT 57.131 50.000 0.00 0.00 0.00 3.08
61 62 8.822805 ACCCTTTTAGTATTGTCTGAACTATCA 58.177 33.333 0.00 0.00 0.00 2.15
62 63 9.668497 AACCCTTTTAGTATTGTCTGAACTATC 57.332 33.333 0.00 0.00 0.00 2.08
63 64 9.449719 CAACCCTTTTAGTATTGTCTGAACTAT 57.550 33.333 0.00 0.00 0.00 2.12
64 65 7.881232 CCAACCCTTTTAGTATTGTCTGAACTA 59.119 37.037 0.00 0.00 0.00 2.24
65 66 6.715264 CCAACCCTTTTAGTATTGTCTGAACT 59.285 38.462 0.00 0.00 0.00 3.01
66 67 6.713450 TCCAACCCTTTTAGTATTGTCTGAAC 59.287 38.462 0.00 0.00 0.00 3.18
67 68 6.713450 GTCCAACCCTTTTAGTATTGTCTGAA 59.287 38.462 0.00 0.00 0.00 3.02
68 69 6.235664 GTCCAACCCTTTTAGTATTGTCTGA 58.764 40.000 0.00 0.00 0.00 3.27
69 70 5.121768 CGTCCAACCCTTTTAGTATTGTCTG 59.878 44.000 0.00 0.00 0.00 3.51
70 71 5.243207 CGTCCAACCCTTTTAGTATTGTCT 58.757 41.667 0.00 0.00 0.00 3.41
71 72 4.142752 GCGTCCAACCCTTTTAGTATTGTC 60.143 45.833 0.00 0.00 0.00 3.18
72 73 3.754850 GCGTCCAACCCTTTTAGTATTGT 59.245 43.478 0.00 0.00 0.00 2.71
73 74 3.181514 CGCGTCCAACCCTTTTAGTATTG 60.182 47.826 0.00 0.00 0.00 1.90
81 82 0.535553 TAAAGCGCGTCCAACCCTTT 60.536 50.000 8.43 9.34 0.00 3.11
112 113 8.413229 GGAATAAAGAATTATAAACCAGCAGCA 58.587 33.333 0.00 0.00 31.44 4.41
113 114 8.413229 TGGAATAAAGAATTATAAACCAGCAGC 58.587 33.333 0.00 0.00 31.44 5.25
135 155 7.876068 ACGCCTTATATTTCGAAATAGATGGAA 59.124 33.333 36.89 23.56 38.59 3.53
159 179 8.856247 GGTTTGGCTTTTCAAATAACTAATACG 58.144 33.333 0.00 0.00 38.64 3.06
169 190 8.532186 AATTTAAAGGGTTTGGCTTTTCAAAT 57.468 26.923 0.00 0.00 38.64 2.32
293 317 3.564511 CCAAAAACATCGACATCCACAC 58.435 45.455 0.00 0.00 0.00 3.82
307 331 1.136891 ACCAAGTGCAGAGCCAAAAAC 59.863 47.619 0.00 0.00 0.00 2.43
360 386 9.125026 CTCAGCTCCAAATTATAAGGTGTATTT 57.875 33.333 10.84 0.00 38.18 1.40
387 413 1.074889 ACCCGCCAAACCAAATACTCT 59.925 47.619 0.00 0.00 0.00 3.24
432 458 6.380095 AACACCGCACTATAAACAAAAAGA 57.620 33.333 0.00 0.00 0.00 2.52
433 459 7.334009 CAAAACACCGCACTATAAACAAAAAG 58.666 34.615 0.00 0.00 0.00 2.27
439 465 4.223659 CACCAAAACACCGCACTATAAAC 58.776 43.478 0.00 0.00 0.00 2.01
442 468 2.038689 TCCACCAAAACACCGCACTATA 59.961 45.455 0.00 0.00 0.00 1.31
446 474 1.065109 GTCCACCAAAACACCGCAC 59.935 57.895 0.00 0.00 0.00 5.34
463 496 2.158957 ACAGAATCACACCGTGAACAGT 60.159 45.455 5.28 0.03 45.96 3.55
465 498 2.209273 CACAGAATCACACCGTGAACA 58.791 47.619 5.28 0.00 45.96 3.18
466 499 2.210116 ACACAGAATCACACCGTGAAC 58.790 47.619 5.28 0.00 45.96 3.18
492 525 9.693739 TTTCCACATATGTATTGGTTGATTAGT 57.306 29.630 8.32 0.00 0.00 2.24
508 541 9.010029 ACAGACGTAGAAAATTTTTCCACATAT 57.990 29.630 16.36 0.00 0.00 1.78
516 549 6.183360 TGCAGACACAGACGTAGAAAATTTTT 60.183 34.615 4.63 0.00 0.00 1.94
532 567 6.424812 GCATCAATATAGTACATGCAGACACA 59.575 38.462 10.06 0.00 39.76 3.72
536 571 7.895759 TGTAGCATCAATATAGTACATGCAGA 58.104 34.615 15.05 4.06 41.98 4.26
589 624 4.962362 TCTGTGCATCCTCTCATTACCTAA 59.038 41.667 0.00 0.00 0.00 2.69
657 693 8.186163 GCTCATGATTTTGACTTGTCAATGATA 58.814 33.333 15.67 5.56 0.00 2.15
660 696 5.575606 GGCTCATGATTTTGACTTGTCAATG 59.424 40.000 15.67 11.08 0.00 2.82
667 704 5.302568 TGAACTTGGCTCATGATTTTGACTT 59.697 36.000 0.00 0.00 0.00 3.01
704 741 1.143183 ACGCCACGTCAGTTGAAGT 59.857 52.632 0.00 0.00 33.69 3.01
722 759 2.270434 ATCCTAAAGCAGTGGAGGGA 57.730 50.000 0.00 0.00 32.95 4.20
730 767 2.349886 GTCAGCACGAATCCTAAAGCAG 59.650 50.000 0.00 0.00 0.00 4.24
731 768 2.346803 GTCAGCACGAATCCTAAAGCA 58.653 47.619 0.00 0.00 0.00 3.91
747 784 2.158449 GCAAACGACTTCAGATGGTCAG 59.842 50.000 0.00 0.00 33.19 3.51
756 793 3.250744 CGATTCCTAGCAAACGACTTCA 58.749 45.455 0.00 0.00 0.00 3.02
759 796 1.641577 GCGATTCCTAGCAAACGACT 58.358 50.000 0.00 0.00 0.00 4.18
766 812 2.945008 CAGATTTTGGCGATTCCTAGCA 59.055 45.455 0.00 0.00 35.26 3.49
781 827 4.728534 GCTATCTAGCGATCGTCAGATTT 58.271 43.478 27.24 14.97 39.82 2.17
797 843 7.699812 GCGAAAAAGATGAAGAAAATGCTATCT 59.300 33.333 0.00 0.00 0.00 1.98
802 848 4.616802 TCGCGAAAAAGATGAAGAAAATGC 59.383 37.500 6.20 0.00 0.00 3.56
806 852 3.498397 AGCTCGCGAAAAAGATGAAGAAA 59.502 39.130 11.33 0.00 0.00 2.52
807 853 3.067106 AGCTCGCGAAAAAGATGAAGAA 58.933 40.909 11.33 0.00 0.00 2.52
808 854 2.413112 CAGCTCGCGAAAAAGATGAAGA 59.587 45.455 11.33 0.00 30.55 2.87
809 855 2.158449 ACAGCTCGCGAAAAAGATGAAG 59.842 45.455 16.74 0.00 33.27 3.02
810 856 2.143122 ACAGCTCGCGAAAAAGATGAA 58.857 42.857 16.74 0.00 33.27 2.57
811 857 1.726791 GACAGCTCGCGAAAAAGATGA 59.273 47.619 16.74 0.00 33.27 2.92
812 858 1.728971 AGACAGCTCGCGAAAAAGATG 59.271 47.619 11.33 10.21 35.11 2.90
813 859 2.086054 AGACAGCTCGCGAAAAAGAT 57.914 45.000 11.33 0.00 0.00 2.40
814 860 2.325761 GTAGACAGCTCGCGAAAAAGA 58.674 47.619 11.33 0.00 0.00 2.52
815 861 1.057847 CGTAGACAGCTCGCGAAAAAG 59.942 52.381 11.33 0.00 0.00 2.27
821 867 1.113253 CATAACGTAGACAGCTCGCG 58.887 55.000 0.00 0.00 0.00 5.87
857 903 8.907222 ATAAACACAGCATTTTCAGGATTTTT 57.093 26.923 0.00 0.00 0.00 1.94
858 904 9.643693 CTATAAACACAGCATTTTCAGGATTTT 57.356 29.630 0.00 0.00 0.00 1.82
867 913 8.635765 TCTTCTTCCTATAAACACAGCATTTT 57.364 30.769 0.00 0.00 0.00 1.82
873 919 9.884465 CACTTTTTCTTCTTCCTATAAACACAG 57.116 33.333 0.00 0.00 0.00 3.66
885 931 3.692791 ACACGGCACTTTTTCTTCTTC 57.307 42.857 0.00 0.00 0.00 2.87
891 937 3.242016 GCTTTGTTACACGGCACTTTTTC 59.758 43.478 4.34 0.00 0.00 2.29
902 950 5.068067 TGGGGTTTTAAGAGCTTTGTTACAC 59.932 40.000 0.00 0.00 0.00 2.90
906 954 5.047306 GCTATGGGGTTTTAAGAGCTTTGTT 60.047 40.000 0.00 0.00 0.00 2.83
1017 1069 2.186903 CGACCGTTGGGGATGGAG 59.813 66.667 0.00 0.00 39.97 3.86
1159 1211 2.187946 CAGCCTCCGACCCATCAC 59.812 66.667 0.00 0.00 0.00 3.06
1370 1422 1.515081 ATTTCCGTGTACGTTGTGGG 58.485 50.000 0.00 0.00 37.74 4.61
1413 1465 1.034838 AGGCCAACAAACGCAGAACA 61.035 50.000 5.01 0.00 0.00 3.18
1454 1506 4.564769 AGAAGCAAAATTTCGACGCAAAAA 59.435 33.333 0.00 0.00 0.00 1.94
1455 1507 4.109050 AGAAGCAAAATTTCGACGCAAAA 58.891 34.783 0.00 0.00 0.00 2.44
1461 1513 3.735746 CCACCAAGAAGCAAAATTTCGAC 59.264 43.478 0.00 0.00 0.00 4.20
1641 1693 0.236449 CGTTTCCAGTTTGTACCCGC 59.764 55.000 0.00 0.00 0.00 6.13
1644 1696 2.032636 CGTTCCGTTTCCAGTTTGTACC 60.033 50.000 0.00 0.00 0.00 3.34
1682 1734 2.080286 AGTCGGTACACATTGCTCAC 57.920 50.000 0.00 0.00 0.00 3.51
1717 1769 6.816640 TGTTACAACTCAAATATCTTCTCCCG 59.183 38.462 0.00 0.00 0.00 5.14
1799 1851 8.287503 GGACATCAGAAATTAACAGTTACGTTT 58.712 33.333 0.00 0.00 0.00 3.60
1856 1908 6.314784 GCCATCTACATTTCACAAAGTACAC 58.685 40.000 0.00 0.00 0.00 2.90
2126 2179 6.118170 CACTGGATACTTCACATCTCCAAAT 58.882 40.000 0.00 0.00 35.67 2.32
2305 2360 9.662545 CATGAAAATGGGTTTGTTGAAATTAAC 57.337 29.630 0.00 0.00 0.00 2.01
2337 2392 9.684448 TGAGCATTATTGTGTTTAATTTCGAAA 57.316 25.926 13.91 13.91 0.00 3.46
2628 2683 7.137426 CAGTGCCATAGCTTTCTTTGATTATC 58.863 38.462 0.00 0.00 40.80 1.75
2744 2799 7.234355 ACTCCAGAAAATCTCAACCTACATTT 58.766 34.615 0.00 0.00 0.00 2.32
2747 2802 5.825593 ACTCCAGAAAATCTCAACCTACA 57.174 39.130 0.00 0.00 0.00 2.74
2835 2890 2.227388 GCAAACCTGTCTCATGGTCTTG 59.773 50.000 0.00 0.00 35.17 3.02
2970 3025 4.218312 ACCCTCTTGCATGTTTTTCTTCT 58.782 39.130 0.00 0.00 0.00 2.85
3116 3171 5.015178 ACATTATTTTTCCCAGAGACCAGGA 59.985 40.000 0.00 0.00 0.00 3.86
3176 3231 4.528596 ACTACAGGTATTTCAGACACTGCT 59.471 41.667 0.00 0.00 0.00 4.24
3217 3272 9.763837 AAAATACTTTACCACTTTAGCCCTTAT 57.236 29.630 0.00 0.00 0.00 1.73
3219 3274 9.763837 ATAAAATACTTTACCACTTTAGCCCTT 57.236 29.630 0.00 0.00 29.82 3.95
3264 3319 9.553064 GGATAAGATGATCTGAAAACTGTACAT 57.447 33.333 0.00 0.00 0.00 2.29
3474 3643 7.141758 TCAATAGCTGAGACCTCCAAATATT 57.858 36.000 0.00 0.00 0.00 1.28
3477 3646 5.643421 ATCAATAGCTGAGACCTCCAAAT 57.357 39.130 0.00 0.00 37.52 2.32
3779 3950 1.420532 AAGGTGCACCCGGGTAAAGA 61.421 55.000 32.29 7.46 38.74 2.52
3780 3951 0.958876 GAAGGTGCACCCGGGTAAAG 60.959 60.000 32.29 16.32 38.74 1.85
3830 4022 8.822805 TCCAGTTCATGTTCTACTAGGTTAAAT 58.177 33.333 0.00 0.00 0.00 1.40
3892 4084 0.536006 AAAGACTCAGGCTGGTGTGC 60.536 55.000 15.73 8.32 0.00 4.57
3917 4111 3.199946 TGGGGTCGAAGCAGATCTTTAAT 59.800 43.478 0.00 0.00 34.56 1.40
3938 4132 2.629617 AGGAGGAAACCAAACATGCTTG 59.370 45.455 1.68 1.68 0.00 4.01
3995 4189 1.208776 CTGTCATGATGGCTCCTCACA 59.791 52.381 0.00 0.00 0.00 3.58
4042 4236 7.002250 TCAATGATATTTGTGGCCAGAAAAA 57.998 32.000 29.53 19.19 0.00 1.94
4043 4237 6.602410 TCAATGATATTTGTGGCCAGAAAA 57.398 33.333 29.53 21.59 0.00 2.29
4044 4238 6.154877 ACATCAATGATATTTGTGGCCAGAAA 59.845 34.615 28.25 28.25 0.00 2.52
4045 4239 5.657745 ACATCAATGATATTTGTGGCCAGAA 59.342 36.000 12.06 12.06 0.00 3.02
4046 4240 5.202765 ACATCAATGATATTTGTGGCCAGA 58.797 37.500 5.11 0.00 0.00 3.86
4047 4241 5.524971 ACATCAATGATATTTGTGGCCAG 57.475 39.130 5.11 0.00 0.00 4.85
4048 4242 5.936187 AACATCAATGATATTTGTGGCCA 57.064 34.783 0.00 0.00 0.00 5.36
4049 4243 7.660112 TCATAACATCAATGATATTTGTGGCC 58.340 34.615 0.00 0.00 0.00 5.36
4050 4244 9.701098 AATCATAACATCAATGATATTTGTGGC 57.299 29.630 0.00 0.00 41.99 5.01
4336 4533 8.390921 TCCTCCCTTTGTCAAATCTAATAAGTT 58.609 33.333 0.00 0.00 0.00 2.66
4337 4534 7.829706 GTCCTCCCTTTGTCAAATCTAATAAGT 59.170 37.037 0.00 0.00 0.00 2.24
4338 4535 7.829211 TGTCCTCCCTTTGTCAAATCTAATAAG 59.171 37.037 0.00 0.00 0.00 1.73
4339 4536 7.695055 TGTCCTCCCTTTGTCAAATCTAATAA 58.305 34.615 0.00 0.00 0.00 1.40
4349 4546 2.305927 GGAATCTGTCCTCCCTTTGTCA 59.694 50.000 0.00 0.00 43.98 3.58
4350 4547 2.356227 GGGAATCTGTCCTCCCTTTGTC 60.356 54.545 0.00 0.00 46.91 3.18
4363 4560 0.995024 ACCTTGTGGGAGGGAATCTG 59.005 55.000 0.00 0.00 41.31 2.90
4364 4561 0.995024 CACCTTGTGGGAGGGAATCT 59.005 55.000 0.00 0.00 41.31 2.40
4375 4572 1.318576 GTTCCCAGGTTCACCTTGTG 58.681 55.000 0.00 0.00 46.09 3.33
4434 4631 7.480378 AGGAACTGCTGATGGAACAAATGAAT 61.480 38.462 0.00 0.00 39.65 2.57
4445 4642 3.244146 CCTGATAGAGGAACTGCTGATGG 60.244 52.174 0.00 0.00 46.33 3.51
4475 4672 0.318120 CTGGTTTGCCATGTTGGACC 59.682 55.000 0.00 0.00 45.05 4.46
4571 4768 3.578716 GTGCAGGAGTAGGCCTATGATTA 59.421 47.826 17.38 0.00 36.22 1.75
4631 4828 1.067635 ACTTTATTTTGCTGCTGCCGG 60.068 47.619 13.47 0.00 38.71 6.13
4633 4830 1.728425 GCACTTTATTTTGCTGCTGCC 59.272 47.619 13.47 0.00 38.71 4.85
4749 4946 5.036117 TCCATAGGAGTTGGCTTTGATAC 57.964 43.478 0.00 0.00 34.06 2.24
5118 5393 0.953727 TGCTGGTGTGTCTTTGCATC 59.046 50.000 0.00 0.00 0.00 3.91
5153 5428 0.461870 TATCACCGTGAGCATGTGGC 60.462 55.000 7.41 0.00 45.30 5.01
5297 5572 1.227527 CCCGCGACCATGCTGATTA 60.228 57.895 8.23 0.00 0.00 1.75
5365 5640 2.034878 TCATTCTCCAGCTATCGTGCT 58.965 47.619 0.00 0.00 45.18 4.40
5385 5723 2.509964 GGGGATGATACTGGTTCTGGTT 59.490 50.000 0.00 0.00 0.00 3.67
5386 5724 2.127708 GGGGATGATACTGGTTCTGGT 58.872 52.381 0.00 0.00 0.00 4.00
5387 5725 2.105477 CTGGGGATGATACTGGTTCTGG 59.895 54.545 0.00 0.00 0.00 3.86
5388 5726 2.105477 CCTGGGGATGATACTGGTTCTG 59.895 54.545 0.00 0.00 0.00 3.02
5389 5727 2.022035 TCCTGGGGATGATACTGGTTCT 60.022 50.000 0.00 0.00 0.00 3.01
5390 5728 2.370189 CTCCTGGGGATGATACTGGTTC 59.630 54.545 0.00 0.00 0.00 3.62
5391 5729 2.022035 TCTCCTGGGGATGATACTGGTT 60.022 50.000 0.00 0.00 0.00 3.67
5392 5730 1.580658 TCTCCTGGGGATGATACTGGT 59.419 52.381 0.00 0.00 0.00 4.00
5393 5731 2.370189 GTTCTCCTGGGGATGATACTGG 59.630 54.545 0.00 0.00 0.00 4.00
5394 5732 2.370189 GGTTCTCCTGGGGATGATACTG 59.630 54.545 0.00 0.00 0.00 2.74
5395 5733 2.022035 TGGTTCTCCTGGGGATGATACT 60.022 50.000 0.00 0.00 34.23 2.12
5396 5734 2.408565 TGGTTCTCCTGGGGATGATAC 58.591 52.381 0.00 0.00 34.23 2.24
5397 5735 2.887454 TGGTTCTCCTGGGGATGATA 57.113 50.000 0.00 0.00 34.23 2.15
5398 5736 2.061061 GATGGTTCTCCTGGGGATGAT 58.939 52.381 0.00 0.00 34.23 2.45
5399 5737 1.274358 TGATGGTTCTCCTGGGGATGA 60.274 52.381 0.00 0.00 34.23 2.92
5400 5738 1.216064 TGATGGTTCTCCTGGGGATG 58.784 55.000 0.00 0.00 34.23 3.51
5401 5739 2.061061 GATGATGGTTCTCCTGGGGAT 58.939 52.381 0.00 0.00 34.23 3.85
5402 5740 1.274358 TGATGATGGTTCTCCTGGGGA 60.274 52.381 0.00 0.00 34.23 4.81
5403 5741 1.142465 CTGATGATGGTTCTCCTGGGG 59.858 57.143 0.00 0.00 34.23 4.96
5404 5742 2.121948 TCTGATGATGGTTCTCCTGGG 58.878 52.381 0.00 0.00 34.23 4.45
5405 5743 3.920231 TTCTGATGATGGTTCTCCTGG 57.080 47.619 0.00 0.00 34.23 4.45
5406 5744 4.135306 CCATTCTGATGATGGTTCTCCTG 58.865 47.826 0.98 0.00 35.16 3.86
5407 5745 3.137913 CCCATTCTGATGATGGTTCTCCT 59.862 47.826 7.42 0.00 35.16 3.69
5408 5746 3.484407 CCCATTCTGATGATGGTTCTCC 58.516 50.000 7.42 0.00 35.16 3.71
5409 5747 2.883386 GCCCATTCTGATGATGGTTCTC 59.117 50.000 7.42 0.00 35.16 2.87
5410 5748 2.242965 TGCCCATTCTGATGATGGTTCT 59.757 45.455 7.42 0.00 35.16 3.01
5411 5749 2.360165 GTGCCCATTCTGATGATGGTTC 59.640 50.000 7.42 1.11 35.16 3.62
5412 5750 2.381911 GTGCCCATTCTGATGATGGTT 58.618 47.619 7.42 0.00 35.16 3.67
5413 5751 1.748244 CGTGCCCATTCTGATGATGGT 60.748 52.381 7.42 0.00 35.16 3.55
5414 5752 0.949397 CGTGCCCATTCTGATGATGG 59.051 55.000 2.01 2.01 35.16 3.51
5415 5753 1.957668 TCGTGCCCATTCTGATGATG 58.042 50.000 0.00 0.00 35.16 3.07
5416 5754 2.945080 ATCGTGCCCATTCTGATGAT 57.055 45.000 0.00 0.00 35.16 2.45
5417 5755 2.548707 GCTATCGTGCCCATTCTGATGA 60.549 50.000 0.00 0.00 35.16 2.92
5418 5756 1.802960 GCTATCGTGCCCATTCTGATG 59.197 52.381 0.00 0.00 0.00 3.07
5419 5757 1.696336 AGCTATCGTGCCCATTCTGAT 59.304 47.619 0.00 0.00 0.00 2.90
5420 5758 1.123077 AGCTATCGTGCCCATTCTGA 58.877 50.000 0.00 0.00 0.00 3.27
5421 5759 1.224075 CAGCTATCGTGCCCATTCTG 58.776 55.000 0.00 0.00 0.00 3.02
5422 5760 0.107456 CCAGCTATCGTGCCCATTCT 59.893 55.000 0.00 0.00 0.00 2.40
5423 5761 0.106708 TCCAGCTATCGTGCCCATTC 59.893 55.000 0.00 0.00 0.00 2.67
5424 5762 0.107456 CTCCAGCTATCGTGCCCATT 59.893 55.000 0.00 0.00 0.00 3.16
5425 5763 0.760567 TCTCCAGCTATCGTGCCCAT 60.761 55.000 0.00 0.00 0.00 4.00
5426 5764 0.975556 TTCTCCAGCTATCGTGCCCA 60.976 55.000 0.00 0.00 0.00 5.36
5427 5765 0.394565 ATTCTCCAGCTATCGTGCCC 59.605 55.000 0.00 0.00 0.00 5.36
5428 5766 1.069204 TCATTCTCCAGCTATCGTGCC 59.931 52.381 0.00 0.00 0.00 5.01
5429 5767 2.515926 TCATTCTCCAGCTATCGTGC 57.484 50.000 0.00 0.00 0.00 5.34
5430 5768 3.126831 GGTTCATTCTCCAGCTATCGTG 58.873 50.000 0.00 0.00 0.00 4.35
5431 5769 2.766263 TGGTTCATTCTCCAGCTATCGT 59.234 45.455 0.00 0.00 0.00 3.73
5432 5770 3.126831 GTGGTTCATTCTCCAGCTATCG 58.873 50.000 0.00 0.00 34.16 2.92
5433 5771 4.142609 TGTGGTTCATTCTCCAGCTATC 57.857 45.455 0.00 0.00 34.16 2.08
5434 5772 4.265073 GTTGTGGTTCATTCTCCAGCTAT 58.735 43.478 0.00 0.00 34.16 2.97
5435 5773 3.559171 GGTTGTGGTTCATTCTCCAGCTA 60.559 47.826 0.00 0.00 34.16 3.32
5436 5774 2.508526 GTTGTGGTTCATTCTCCAGCT 58.491 47.619 0.00 0.00 34.16 4.24
5437 5775 1.541588 GGTTGTGGTTCATTCTCCAGC 59.458 52.381 0.00 0.00 34.16 4.85
5438 5776 2.816087 CTGGTTGTGGTTCATTCTCCAG 59.184 50.000 0.00 0.00 35.90 3.86
5439 5777 2.174639 ACTGGTTGTGGTTCATTCTCCA 59.825 45.455 0.00 0.00 0.00 3.86
5440 5778 2.863809 ACTGGTTGTGGTTCATTCTCC 58.136 47.619 0.00 0.00 0.00 3.71
5441 5779 5.245531 TGATACTGGTTGTGGTTCATTCTC 58.754 41.667 0.00 0.00 0.00 2.87
5442 5780 5.241403 TGATACTGGTTGTGGTTCATTCT 57.759 39.130 0.00 0.00 0.00 2.40
5443 5781 5.066505 GGATGATACTGGTTGTGGTTCATTC 59.933 44.000 0.00 0.00 30.04 2.67
5444 5782 4.949856 GGATGATACTGGTTGTGGTTCATT 59.050 41.667 0.00 0.00 30.04 2.57
5445 5783 4.526970 GGATGATACTGGTTGTGGTTCAT 58.473 43.478 0.00 0.00 31.45 2.57
5446 5784 3.308117 GGGATGATACTGGTTGTGGTTCA 60.308 47.826 0.00 0.00 0.00 3.18
5447 5785 3.279434 GGGATGATACTGGTTGTGGTTC 58.721 50.000 0.00 0.00 0.00 3.62
5599 5937 3.390135 GTGACTGCACAAAGTACTGCTA 58.610 45.455 0.00 0.00 44.51 3.49
5630 5968 0.698818 AATGGGAGTTGACACCCTCC 59.301 55.000 16.07 10.65 45.60 4.30
5633 5971 2.296190 GACAAAATGGGAGTTGACACCC 59.704 50.000 9.42 9.42 45.61 4.61
5638 5976 4.163441 TGACTGACAAAATGGGAGTTGA 57.837 40.909 0.00 0.00 0.00 3.18
5942 6283 2.743928 GAGCTGGTTGGGACGCTG 60.744 66.667 0.00 0.00 31.96 5.18
5946 6287 2.671682 GGAGGAGCTGGTTGGGAC 59.328 66.667 0.00 0.00 0.00 4.46
5971 6312 0.830648 GCCCCAGCATCTAGTACACA 59.169 55.000 0.00 0.00 39.53 3.72
6052 6393 9.883142 TGATGTGTTATTTGATATGTAGACACA 57.117 29.630 8.21 8.21 46.65 3.72
6142 6483 3.797039 TGGTGCTATCTGAGTGTAATGC 58.203 45.455 0.00 0.00 0.00 3.56
6150 6491 0.875040 CGCTGCTGGTGCTATCTGAG 60.875 60.000 0.00 0.00 40.48 3.35
6275 6630 2.158696 GGGAGCTTCTGCATGGTAGATT 60.159 50.000 0.00 0.00 42.74 2.40
6281 6636 0.835941 ACTAGGGAGCTTCTGCATGG 59.164 55.000 0.00 0.00 42.74 3.66
6283 6638 2.038659 GAGACTAGGGAGCTTCTGCAT 58.961 52.381 0.00 0.00 42.74 3.96
6299 6654 6.128007 GCTTGGAGAGAGCACTATATAGAGAC 60.128 46.154 16.79 6.71 39.89 3.36
6302 6657 5.709631 CAGCTTGGAGAGAGCACTATATAGA 59.290 44.000 16.79 0.00 42.56 1.98
6310 6665 0.534412 TAGCAGCTTGGAGAGAGCAC 59.466 55.000 0.00 0.00 42.56 4.40
6338 6693 7.708752 GGTTATTTCAAACATTTTGTCACCTGA 59.291 33.333 0.00 0.00 0.00 3.86
6486 6844 2.897350 TGGGTAGACTTGTAAGAGCCA 58.103 47.619 0.00 0.00 35.40 4.75
6487 6845 3.197983 ACATGGGTAGACTTGTAAGAGCC 59.802 47.826 0.00 0.00 0.00 4.70
6568 6926 2.583143 GGGTGGCTGAAAGTTAACACT 58.417 47.619 8.61 0.00 35.30 3.55
6586 6944 2.829023 TGGACTAAACCTCTAGTGGGG 58.171 52.381 15.12 6.69 32.14 4.96
6593 6951 4.273300 AGCCTAGATGGACTAAACCTCT 57.727 45.455 0.00 0.00 38.35 3.69
6638 7066 3.752747 TGCCATATGTCAGTGTTGAACAG 59.247 43.478 0.00 0.00 34.49 3.16
6723 7458 7.819900 TGCAAAACTACATTGTTACTTTTTGGT 59.180 29.630 17.38 0.00 34.51 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.