Multiple sequence alignment - TraesCS5A01G066200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G066200 chr5A 100.000 4658 0 0 1 4658 73829658 73825001 0.000000e+00 8602.0
1 TraesCS5A01G066200 chr5A 76.997 1978 416 35 1049 3008 329994834 329992878 0.000000e+00 1096.0
2 TraesCS5A01G066200 chr5A 94.709 189 10 0 4470 4658 623320872 623321060 1.270000e-75 294.0
3 TraesCS5A01G066200 chr5B 90.286 3047 227 24 960 3999 86247000 86244016 0.000000e+00 3923.0
4 TraesCS5A01G066200 chr5B 78.509 1945 383 32 1034 2967 596393827 596395747 0.000000e+00 1243.0
5 TraesCS5A01G066200 chr5B 87.522 1122 77 28 3319 4425 85924135 85923062 0.000000e+00 1238.0
6 TraesCS5A01G066200 chr5B 78.478 1905 387 19 1073 2967 280605557 280603666 0.000000e+00 1225.0
7 TraesCS5A01G066200 chr5B 90.693 924 67 7 2309 3230 85946238 85945332 0.000000e+00 1212.0
8 TraesCS5A01G066200 chr5B 83.603 1299 166 20 1 1278 85968043 85966771 0.000000e+00 1175.0
9 TraesCS5A01G066200 chr5B 89.079 760 58 8 2 749 86250768 86250022 0.000000e+00 920.0
10 TraesCS5A01G066200 chr5B 94.845 582 30 0 1707 2288 85952017 85951436 0.000000e+00 909.0
11 TraesCS5A01G066200 chr5B 84.865 892 110 6 830 1712 85967082 85966207 0.000000e+00 876.0
12 TraesCS5A01G066200 chr5B 83.073 384 62 1 3282 3665 280647692 280647312 3.450000e-91 346.0
13 TraesCS5A01G066200 chr5B 95.789 190 8 0 4469 4658 185536624 185536813 1.630000e-79 307.0
14 TraesCS5A01G066200 chr5B 84.828 145 21 1 4183 4327 86241692 86241549 1.350000e-30 145.0
15 TraesCS5A01G066200 chr5D 94.831 2283 101 6 1835 4117 77017258 77014993 0.000000e+00 3546.0
16 TraesCS5A01G066200 chr5D 91.934 905 71 2 1 904 77053029 77052126 0.000000e+00 1266.0
17 TraesCS5A01G066200 chr5D 77.047 1991 408 42 1049 3015 246012390 246010425 0.000000e+00 1099.0
18 TraesCS5A01G066200 chr5D 85.618 890 115 13 926 1808 77051960 77051077 0.000000e+00 922.0
19 TraesCS5A01G066200 chr5D 85.946 370 50 2 544 912 77052126 77051758 1.210000e-105 394.0
20 TraesCS5A01G066200 chr5D 86.520 319 26 7 4095 4412 77014942 77014640 7.470000e-88 335.0
21 TraesCS5A01G066200 chr5D 100.000 59 0 0 4143 4201 77014997 77014939 4.930000e-20 110.0
22 TraesCS5A01G066200 chr7A 76.895 1913 401 32 1074 2967 19517141 19519031 0.000000e+00 1046.0
23 TraesCS5A01G066200 chr7A 76.452 947 210 10 2026 2967 3603248 3602310 6.960000e-138 501.0
24 TraesCS5A01G066200 chr7A 75.527 474 92 23 818 1279 2764119 2764580 1.310000e-50 211.0
25 TraesCS5A01G066200 chr4A 76.698 1914 403 34 1074 2967 713505169 713503279 0.000000e+00 1024.0
26 TraesCS5A01G066200 chr4A 73.096 1208 291 26 1390 2587 741183707 741184890 2.610000e-107 399.0
27 TraesCS5A01G066200 chr4A 95.238 189 8 1 4470 4658 655654409 655654596 9.800000e-77 298.0
28 TraesCS5A01G066200 chr4A 74.497 447 99 12 783 1221 742075972 742076411 3.700000e-41 180.0
29 TraesCS5A01G066200 chr4A 74.818 413 91 10 816 1221 739682017 739682423 1.720000e-39 174.0
30 TraesCS5A01G066200 chr4A 88.750 80 7 2 4394 4472 610327710 610327788 3.840000e-16 97.1
31 TraesCS5A01G066200 chr4A 95.082 61 3 0 4412 4472 655654302 655654362 3.840000e-16 97.1
32 TraesCS5A01G066200 chr4A 93.651 63 3 1 4411 4472 731087588 731087650 4.960000e-15 93.5
33 TraesCS5A01G066200 chr7D 75.504 2184 482 42 809 2967 19050665 19052820 0.000000e+00 1020.0
34 TraesCS5A01G066200 chr7D 74.538 2109 493 38 881 2967 2442895 2440809 0.000000e+00 880.0
35 TraesCS5A01G066200 chr2D 96.842 190 4 2 4470 4658 517194705 517194517 2.710000e-82 316.0
36 TraesCS5A01G066200 chr2D 97.268 183 5 0 4476 4658 351380263 351380081 1.260000e-80 311.0
37 TraesCS5A01G066200 chr2D 77.019 322 66 7 962 1279 66185957 66185640 1.330000e-40 178.0
38 TraesCS5A01G066200 chr2D 96.774 62 2 0 4411 4472 309068302 309068241 2.290000e-18 104.0
39 TraesCS5A01G066200 chr2D 96.667 60 2 0 4413 4472 351380375 351380316 2.970000e-17 100.0
40 TraesCS5A01G066200 chr1D 96.809 188 6 0 4470 4657 19526408 19526221 9.730000e-82 315.0
41 TraesCS5A01G066200 chr3D 96.296 189 7 0 4470 4658 565988536 565988724 1.260000e-80 311.0
42 TraesCS5A01G066200 chr2B 96.277 188 7 0 4470 4657 103962969 103963156 4.530000e-80 309.0
43 TraesCS5A01G066200 chr2B 94.681 188 10 0 4470 4657 103925645 103925832 4.560000e-75 292.0
44 TraesCS5A01G066200 chr6A 75.765 392 81 13 895 1279 115620195 115619811 7.960000e-43 185.0
45 TraesCS5A01G066200 chr6A 75.510 392 82 13 895 1279 115621073 115620689 3.700000e-41 180.0
46 TraesCS5A01G066200 chr7B 93.548 62 4 0 4411 4472 750214107 750214168 4.960000e-15 93.5
47 TraesCS5A01G066200 chrUn 91.304 69 3 3 4407 4472 236185539 236185607 1.780000e-14 91.6
48 TraesCS5A01G066200 chr6B 93.443 61 4 0 4412 4472 11555912 11555852 1.780000e-14 91.6
49 TraesCS5A01G066200 chr6B 91.045 67 3 2 4407 4472 38016571 38016507 2.310000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G066200 chr5A 73825001 73829658 4657 True 8602.000000 8602 100.000000 1 4658 1 chr5A.!!$R1 4657
1 TraesCS5A01G066200 chr5A 329992878 329994834 1956 True 1096.000000 1096 76.997000 1049 3008 1 chr5A.!!$R2 1959
2 TraesCS5A01G066200 chr5B 86241549 86250768 9219 True 1662.666667 3923 88.064333 2 4327 3 chr5B.!!$R7 4325
3 TraesCS5A01G066200 chr5B 596393827 596395747 1920 False 1243.000000 1243 78.509000 1034 2967 1 chr5B.!!$F2 1933
4 TraesCS5A01G066200 chr5B 85923062 85924135 1073 True 1238.000000 1238 87.522000 3319 4425 1 chr5B.!!$R1 1106
5 TraesCS5A01G066200 chr5B 280603666 280605557 1891 True 1225.000000 1225 78.478000 1073 2967 1 chr5B.!!$R4 1894
6 TraesCS5A01G066200 chr5B 85945332 85946238 906 True 1212.000000 1212 90.693000 2309 3230 1 chr5B.!!$R2 921
7 TraesCS5A01G066200 chr5B 85966207 85968043 1836 True 1025.500000 1175 84.234000 1 1712 2 chr5B.!!$R6 1711
8 TraesCS5A01G066200 chr5B 85951436 85952017 581 True 909.000000 909 94.845000 1707 2288 1 chr5B.!!$R3 581
9 TraesCS5A01G066200 chr5D 77014640 77017258 2618 True 1330.333333 3546 93.783667 1835 4412 3 chr5D.!!$R2 2577
10 TraesCS5A01G066200 chr5D 246010425 246012390 1965 True 1099.000000 1099 77.047000 1049 3015 1 chr5D.!!$R1 1966
11 TraesCS5A01G066200 chr5D 77051077 77053029 1952 True 860.666667 1266 87.832667 1 1808 3 chr5D.!!$R3 1807
12 TraesCS5A01G066200 chr7A 19517141 19519031 1890 False 1046.000000 1046 76.895000 1074 2967 1 chr7A.!!$F2 1893
13 TraesCS5A01G066200 chr7A 3602310 3603248 938 True 501.000000 501 76.452000 2026 2967 1 chr7A.!!$R1 941
14 TraesCS5A01G066200 chr4A 713503279 713505169 1890 True 1024.000000 1024 76.698000 1074 2967 1 chr4A.!!$R1 1893
15 TraesCS5A01G066200 chr4A 741183707 741184890 1183 False 399.000000 399 73.096000 1390 2587 1 chr4A.!!$F4 1197
16 TraesCS5A01G066200 chr7D 19050665 19052820 2155 False 1020.000000 1020 75.504000 809 2967 1 chr7D.!!$F1 2158
17 TraesCS5A01G066200 chr7D 2440809 2442895 2086 True 880.000000 880 74.538000 881 2967 1 chr7D.!!$R1 2086

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
115 128 0.471617 CCATAGCCAAGTCTCCCTGG 59.528 60.0 0.00 0.0 0.00 4.45 F
1318 4873 0.328258 GGCTAGGTTCCAAGCTTCCA 59.672 55.0 0.00 0.0 38.80 3.53 F
1463 5033 0.390472 GTGAGAGTTCGCCTTGAGGG 60.390 60.0 0.00 0.0 35.18 4.30 F
1471 5041 0.392998 TCGCCTTGAGGGAAATCAGC 60.393 55.0 0.00 0.0 37.23 4.26 F
1472 5042 0.393537 CGCCTTGAGGGAAATCAGCT 60.394 55.0 0.00 0.0 37.23 4.24 F
1608 5178 0.524392 CGTTGCGTGCCTCAAACAAA 60.524 50.0 0.00 0.0 0.00 2.83 F
3521 7109 0.944386 AAAGTGATCGCGTTTGCTGT 59.056 45.0 5.77 0.0 39.65 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1388 4943 0.534873 ACCAACCAAGTTGTTGCCAC 59.465 50.000 1.45 0.0 43.36 5.01 R
3054 6639 1.651987 TATTCGCTACTGCTTGGCAC 58.348 50.000 0.00 0.0 36.97 5.01 R
3197 6783 4.752101 ACTGCTAAACATATCGGCTCAATC 59.248 41.667 0.00 0.0 0.00 2.67 R
3349 6936 5.352284 CGTGAGCACTCCAAAACTATAGAT 58.648 41.667 6.78 0.0 0.00 1.98 R
3477 7065 0.321122 CTTTGCTTCGGACCTCAGCT 60.321 55.000 11.85 0.0 34.42 4.24 R
3550 7138 0.032403 GCTTGCTGCATTGTTGGACA 59.968 50.000 1.84 0.0 42.31 4.02 R
4583 10426 0.030235 GTTGGTGCACGGTTTCCTTC 59.970 55.000 11.45 0.0 0.00 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
115 128 0.471617 CCATAGCCAAGTCTCCCTGG 59.528 60.000 0.00 0.00 0.00 4.45
154 167 1.003839 TCAGCGCCTTGTAGTTGGG 60.004 57.895 2.29 0.00 0.00 4.12
192 218 0.846401 CACTGACAACACGACGACAG 59.154 55.000 0.00 0.00 0.00 3.51
193 219 0.870307 ACTGACAACACGACGACAGC 60.870 55.000 0.00 0.00 0.00 4.40
194 220 1.866171 CTGACAACACGACGACAGCG 61.866 60.000 0.00 0.00 44.79 5.18
195 221 2.645510 GACAACACGACGACAGCGG 61.646 63.158 0.00 0.00 43.17 5.52
196 222 4.059459 CAACACGACGACAGCGGC 62.059 66.667 0.00 0.00 43.80 6.53
237 264 1.077930 CGGTGTCTCTCTACGGGGA 60.078 63.158 0.00 0.00 0.00 4.81
322 349 1.291588 CTCTCGCACAACCAGCTCT 59.708 57.895 0.00 0.00 0.00 4.09
402 429 2.411904 GGCAATCAGATAAGAGGCTCG 58.588 52.381 9.22 0.00 0.00 5.03
458 485 0.535102 ACCCTGCGTCTTTCCAACAG 60.535 55.000 0.00 0.00 0.00 3.16
585 612 9.887406 ATAGGAAATTTAACACAACTAACAACG 57.113 29.630 0.00 0.00 0.00 4.10
599 626 6.893958 ACTAACAACGCTTCATCTTCATAG 57.106 37.500 0.00 0.00 0.00 2.23
606 633 7.172532 ACAACGCTTCATCTTCATAGTAACAAA 59.827 33.333 0.00 0.00 0.00 2.83
608 635 7.910304 ACGCTTCATCTTCATAGTAACAAATC 58.090 34.615 0.00 0.00 0.00 2.17
616 643 7.735917 TCTTCATAGTAACAAATCCATCGGAT 58.264 34.615 0.00 0.00 45.46 4.18
621 648 5.694995 AGTAACAAATCCATCGGATCCATT 58.305 37.500 13.41 0.04 42.27 3.16
661 688 4.733077 TTGGTAAACCTGGAGGATTTGA 57.267 40.909 0.00 0.00 38.94 2.69
662 689 4.946160 TGGTAAACCTGGAGGATTTGAT 57.054 40.909 0.00 0.00 38.94 2.57
698 725 5.250774 ACAAACTTACAGGATCCATACCAGT 59.749 40.000 15.82 6.17 0.00 4.00
729 756 6.488683 TGGGAAATTTGACTAAATTCACGACT 59.511 34.615 0.00 0.00 43.74 4.18
733 760 7.623268 AATTTGACTAAATTCACGACTTTGC 57.377 32.000 0.00 0.00 41.43 3.68
740 767 7.152645 ACTAAATTCACGACTTTGCTTCTCTA 58.847 34.615 0.00 0.00 0.00 2.43
789 3843 7.733773 TCCTCAAGAACTAGGTCATTTGATA 57.266 36.000 11.14 1.43 34.30 2.15
814 3868 5.602628 ACTTAGAGAACTTGTCGCTTTCTT 58.397 37.500 0.00 0.00 37.58 2.52
821 3875 5.353123 AGAACTTGTCGCTTTCTTACAACAA 59.647 36.000 0.00 0.00 0.00 2.83
834 3888 5.194432 TCTTACAACAAACTAACAGGCCAA 58.806 37.500 5.01 0.00 0.00 4.52
837 3891 5.351948 ACAACAAACTAACAGGCCAAATT 57.648 34.783 5.01 0.00 0.00 1.82
861 3915 4.401519 CCTCCAGAACTAGGTCGTTTGATA 59.598 45.833 1.15 0.00 0.00 2.15
863 3917 6.349243 TCCAGAACTAGGTCGTTTGATAAA 57.651 37.500 1.15 0.00 0.00 1.40
868 3922 9.199982 CAGAACTAGGTCGTTTGATAAACTTAA 57.800 33.333 1.15 0.00 39.23 1.85
883 3998 8.093927 TGATAAACTTAAAGAAATTGGGGCTTG 58.906 33.333 0.00 0.00 0.00 4.01
907 4022 4.643334 GTGAAAACAAACTAACAGGTCCCT 59.357 41.667 0.00 0.00 0.00 4.20
917 4032 0.930726 ACAGGTCCCTTCCCAAACAA 59.069 50.000 0.00 0.00 0.00 2.83
922 4037 3.858638 AGGTCCCTTCCCAAACAATCTAT 59.141 43.478 0.00 0.00 0.00 1.98
930 4045 7.344352 CCCTTCCCAAACAATCTATGGAATTTA 59.656 37.037 0.00 0.00 36.27 1.40
933 4048 8.073467 TCCCAAACAATCTATGGAATTTAACC 57.927 34.615 0.00 0.00 36.27 2.85
942 4057 9.533831 AATCTATGGAATTTAACCAAACTCACT 57.466 29.630 0.00 0.00 40.93 3.41
986 4101 0.967380 CTTTCTGGCCACATCCCACC 60.967 60.000 0.00 0.00 0.00 4.61
987 4102 1.724148 TTTCTGGCCACATCCCACCA 61.724 55.000 0.00 0.00 0.00 4.17
997 4112 0.755686 CATCCCACCAGAGCTAGGTC 59.244 60.000 14.19 14.19 37.23 3.85
998 4113 0.757188 ATCCCACCAGAGCTAGGTCG 60.757 60.000 15.91 10.79 37.23 4.79
1015 4130 7.937942 AGCTAGGTCGTATGATAAACTTAGAGA 59.062 37.037 8.59 0.00 0.00 3.10
1016 4131 8.732531 GCTAGGTCGTATGATAAACTTAGAGAT 58.267 37.037 8.59 0.00 0.00 2.75
1036 4151 5.821204 AGATCTTGTTTCTTGGTGAAAACG 58.179 37.500 0.00 0.00 45.10 3.60
1039 4154 3.791973 TGTTTCTTGGTGAAAACGCAT 57.208 38.095 0.00 0.00 45.10 4.73
1051 4166 3.004944 TGAAAACGCATTAACAGGTTCCC 59.995 43.478 0.00 0.00 0.00 3.97
1057 4316 3.161866 GCATTAACAGGTTCCCTTCCAA 58.838 45.455 0.00 0.00 0.00 3.53
1058 4317 3.576550 GCATTAACAGGTTCCCTTCCAAA 59.423 43.478 0.00 0.00 0.00 3.28
1061 4320 2.838637 ACAGGTTCCCTTCCAAACAA 57.161 45.000 0.00 0.00 0.00 2.83
1062 4321 3.328535 ACAGGTTCCCTTCCAAACAAT 57.671 42.857 0.00 0.00 0.00 2.71
1063 4322 3.230976 ACAGGTTCCCTTCCAAACAATC 58.769 45.455 0.00 0.00 0.00 2.67
1066 4325 5.222337 ACAGGTTCCCTTCCAAACAATCTAT 60.222 40.000 0.00 0.00 0.00 1.98
1068 4327 5.016831 GGTTCCCTTCCAAACAATCTATGT 58.983 41.667 0.00 0.00 46.82 2.29
1071 4330 7.362660 GGTTCCCTTCCAAACAATCTATGTAAC 60.363 40.741 0.00 0.00 42.99 2.50
1135 4394 0.331616 TGGACACATCCCTCGAGAGA 59.668 55.000 15.71 6.54 45.59 3.10
1160 4563 8.871629 ATAGGTCGTATGATGAACTTAGAGAT 57.128 34.615 0.00 0.00 32.52 2.75
1245 4799 9.823647 ACTAAGGTCACTGTCATAGATTTAATG 57.176 33.333 0.00 0.00 0.00 1.90
1318 4873 0.328258 GGCTAGGTTCCAAGCTTCCA 59.672 55.000 0.00 0.00 38.80 3.53
1388 4943 1.394917 GCTGCAGTATTTCACCGTCAG 59.605 52.381 16.64 0.00 0.00 3.51
1413 4968 2.499693 CAACAACTTGGTTGGTCCCTTT 59.500 45.455 13.75 0.00 41.92 3.11
1462 5032 0.605589 AGTGAGAGTTCGCCTTGAGG 59.394 55.000 0.00 0.00 34.29 3.86
1463 5033 0.390472 GTGAGAGTTCGCCTTGAGGG 60.390 60.000 0.00 0.00 35.18 4.30
1464 5034 0.541998 TGAGAGTTCGCCTTGAGGGA 60.542 55.000 0.00 0.00 37.23 4.20
1465 5035 0.608640 GAGAGTTCGCCTTGAGGGAA 59.391 55.000 0.00 0.00 44.51 3.97
1470 5040 2.113860 TTCGCCTTGAGGGAAATCAG 57.886 50.000 0.00 0.00 43.82 2.90
1471 5041 0.392998 TCGCCTTGAGGGAAATCAGC 60.393 55.000 0.00 0.00 37.23 4.26
1472 5042 0.393537 CGCCTTGAGGGAAATCAGCT 60.394 55.000 0.00 0.00 37.23 4.24
1473 5043 1.101331 GCCTTGAGGGAAATCAGCTG 58.899 55.000 7.63 7.63 37.23 4.24
1474 5044 1.760192 CCTTGAGGGAAATCAGCTGG 58.240 55.000 15.13 0.00 37.23 4.85
1475 5045 1.283029 CCTTGAGGGAAATCAGCTGGA 59.717 52.381 15.13 0.57 37.23 3.86
1476 5046 2.291153 CCTTGAGGGAAATCAGCTGGAA 60.291 50.000 15.13 0.00 37.23 3.53
1485 5055 5.457342 GGGAAATCAGCTGGAAGGAGATATT 60.457 44.000 15.13 0.00 0.00 1.28
1523 5093 7.878127 AGTTCACCCGAATCTTGTATATATTGG 59.122 37.037 0.00 0.00 32.61 3.16
1608 5178 0.524392 CGTTGCGTGCCTCAAACAAA 60.524 50.000 0.00 0.00 0.00 2.83
1712 5282 3.831911 GGACAAATCCCACCAGAAATTGA 59.168 43.478 0.00 0.00 39.39 2.57
1765 5336 6.817765 TTGGTAATAACTTGCTTCAAGGAG 57.182 37.500 10.80 0.00 44.81 3.69
1851 5422 2.053865 TGGGTCGATACACGGGTCC 61.054 63.158 0.00 0.00 42.82 4.46
2038 5609 5.056480 TGCTCGAGAACTTGAATCTTTCAA 58.944 37.500 18.75 2.96 46.68 2.69
2292 5869 9.998106 GTTTTACTAGCTATAATTCCTGATCCA 57.002 33.333 0.00 0.00 0.00 3.41
2325 5908 3.056107 TGCTCATCACCACAGTAGTAACC 60.056 47.826 0.00 0.00 0.00 2.85
2326 5909 3.679083 GCTCATCACCACAGTAGTAACCC 60.679 52.174 0.00 0.00 0.00 4.11
2443 6026 8.682936 AGATCTGTACAAGAAAATTGTTGACT 57.317 30.769 9.68 0.00 38.79 3.41
2644 6227 7.446769 TGTGAAGTTATTTGGCTACTGTTCTA 58.553 34.615 0.00 0.00 0.00 2.10
2720 6303 8.355913 AGCAGAATCTTTAAAGAACAAGGAAAG 58.644 33.333 21.26 6.63 38.77 2.62
2967 6550 3.636764 GGTATCTTGCCCCAGGTAAAATG 59.363 47.826 0.00 0.00 0.00 2.32
2969 6552 3.534357 TCTTGCCCCAGGTAAAATGAA 57.466 42.857 0.00 0.00 0.00 2.57
2970 6553 3.161866 TCTTGCCCCAGGTAAAATGAAC 58.838 45.455 0.00 0.00 0.00 3.18
3002 6587 6.368791 TCTGTTAGATCTGTGTGTTGTTATGC 59.631 38.462 5.18 0.00 0.00 3.14
3031 6616 7.710907 TCTTTCTCGTCCGATCAAATATGAAAT 59.289 33.333 0.00 0.00 39.49 2.17
3034 6619 7.630026 TCTCGTCCGATCAAATATGAAATTTG 58.370 34.615 0.00 4.46 39.49 2.32
3197 6783 4.771590 ACAATCTACATTGCCAACAGTG 57.228 40.909 0.00 0.00 43.03 3.66
3237 6823 5.968676 AGCAGTTGGGTAATAATAGACCA 57.031 39.130 0.00 0.00 37.47 4.02
3245 6831 8.403236 GTTGGGTAATAATAGACCATTGTTGTC 58.597 37.037 0.00 0.00 37.47 3.18
3277 6863 7.957002 TCTAGATTCAGTTTCTTGAAGTGTCT 58.043 34.615 0.00 0.00 40.16 3.41
3349 6936 1.608025 GGGTGACAGAGAAATGCGACA 60.608 52.381 0.00 0.00 0.00 4.35
3421 7009 5.107133 CAGGTGATTTTCTTTCATCCATGC 58.893 41.667 0.00 0.00 0.00 4.06
3477 7065 3.083349 CGGATCCCACTCCCTGCA 61.083 66.667 6.06 0.00 31.04 4.41
3487 7075 3.005539 TCCCTGCAGCTGAGGTCC 61.006 66.667 20.43 0.00 0.00 4.46
3488 7076 4.463879 CCCTGCAGCTGAGGTCCG 62.464 72.222 20.43 5.37 0.00 4.79
3521 7109 0.944386 AAAGTGATCGCGTTTGCTGT 59.056 45.000 5.77 0.00 39.65 4.40
3537 7125 1.369625 CTGTTCGGTGCATAGAACCC 58.630 55.000 24.69 6.73 44.30 4.11
3550 7138 0.620556 AGAACCCAATCCATCACGCT 59.379 50.000 0.00 0.00 0.00 5.07
3564 7152 0.386352 CACGCTGTCCAACAATGCAG 60.386 55.000 0.00 0.00 0.00 4.41
3761 7351 1.808234 GCTTCGCGCCACGTACTATG 61.808 60.000 0.00 0.00 44.19 2.23
3919 7532 6.925165 CCATTCAACTGGTAATTTCATATGCC 59.075 38.462 0.00 0.00 0.00 4.40
3920 7533 6.463995 TTCAACTGGTAATTTCATATGCCC 57.536 37.500 0.00 0.00 0.00 5.36
3922 7535 4.431416 ACTGGTAATTTCATATGCCCGA 57.569 40.909 0.00 0.00 0.00 5.14
3977 7590 7.361894 TCCTTTAGTATGTTGCCGTTTAAAAC 58.638 34.615 0.00 0.00 0.00 2.43
3983 7596 7.134163 AGTATGTTGCCGTTTAAAACTGTTAC 58.866 34.615 0.00 0.00 0.00 2.50
4038 9725 6.332901 AGGGGATAGAAATGGTATAAAGCACT 59.667 38.462 0.00 0.00 35.57 4.40
4039 9726 7.516209 AGGGGATAGAAATGGTATAAAGCACTA 59.484 37.037 0.00 0.00 35.57 2.74
4040 9727 8.161425 GGGGATAGAAATGGTATAAAGCACTAA 58.839 37.037 0.00 0.00 35.57 2.24
4041 9728 9.569122 GGGATAGAAATGGTATAAAGCACTAAA 57.431 33.333 0.00 0.00 35.57 1.85
4044 9731 7.938140 AGAAATGGTATAAAGCACTAAAGCA 57.062 32.000 0.00 0.00 35.57 3.91
4104 9863 6.038714 AGTTCTCAACAAAGGAAAGCTACTTG 59.961 38.462 0.00 0.00 0.00 3.16
4219 10060 2.355363 GCAGTACGGTCGCACACA 60.355 61.111 0.00 0.00 0.00 3.72
4224 10065 1.299544 TACGGTCGCACACACACTG 60.300 57.895 0.00 0.00 0.00 3.66
4225 10066 2.686956 TACGGTCGCACACACACTGG 62.687 60.000 0.00 0.00 0.00 4.00
4228 10069 1.219522 GGTCGCACACACACTGGTAC 61.220 60.000 0.00 0.00 0.00 3.34
4275 10116 2.036346 GCCTGCAGGTTCTGAACAATTT 59.964 45.455 32.81 2.15 37.57 1.82
4276 10117 3.255642 GCCTGCAGGTTCTGAACAATTTA 59.744 43.478 32.81 3.78 37.57 1.40
4335 10178 9.006839 AGGCATAATATATTGCATTATCCATCG 57.993 33.333 8.28 0.00 40.66 3.84
4353 10196 1.205655 TCGGAAGTGATCTCAGCTTGG 59.794 52.381 0.00 0.00 0.00 3.61
4412 10255 7.839680 AACTGATTTTCCTGGTAACTTGATT 57.160 32.000 0.00 0.00 37.61 2.57
4413 10256 7.839680 ACTGATTTTCCTGGTAACTTGATTT 57.160 32.000 0.00 0.00 37.61 2.17
4459 10302 7.849804 ATATCAAGCGGATATCAATTACACC 57.150 36.000 4.83 0.00 44.17 4.16
4460 10303 4.385825 TCAAGCGGATATCAATTACACCC 58.614 43.478 4.83 0.00 0.00 4.61
4461 10304 3.040147 AGCGGATATCAATTACACCCG 57.960 47.619 4.83 0.00 38.58 5.28
4462 10305 2.073816 GCGGATATCAATTACACCCGG 58.926 52.381 4.83 0.00 36.35 5.73
4463 10306 2.073816 CGGATATCAATTACACCCGGC 58.926 52.381 4.83 0.00 32.64 6.13
4464 10307 2.433436 GGATATCAATTACACCCGGCC 58.567 52.381 4.83 0.00 0.00 6.13
4465 10308 2.039879 GGATATCAATTACACCCGGCCT 59.960 50.000 0.00 0.00 0.00 5.19
4466 10309 2.922740 TATCAATTACACCCGGCCTC 57.077 50.000 0.00 0.00 0.00 4.70
4467 10310 1.213296 ATCAATTACACCCGGCCTCT 58.787 50.000 0.00 0.00 0.00 3.69
4468 10311 0.251916 TCAATTACACCCGGCCTCTG 59.748 55.000 0.00 0.00 0.00 3.35
4469 10312 1.077716 AATTACACCCGGCCTCTGC 60.078 57.895 0.00 0.00 0.00 4.26
4470 10313 1.847798 AATTACACCCGGCCTCTGCA 61.848 55.000 0.00 0.00 40.13 4.41
4471 10314 1.847798 ATTACACCCGGCCTCTGCAA 61.848 55.000 0.00 0.00 40.13 4.08
4472 10315 2.058125 TTACACCCGGCCTCTGCAAA 62.058 55.000 0.00 0.00 40.13 3.68
4473 10316 2.058125 TACACCCGGCCTCTGCAAAA 62.058 55.000 0.00 0.00 40.13 2.44
4474 10317 2.282462 ACCCGGCCTCTGCAAAAG 60.282 61.111 0.00 0.00 40.13 2.27
4475 10318 2.034066 CCCGGCCTCTGCAAAAGA 59.966 61.111 0.00 0.00 40.13 2.52
4476 10319 1.603455 CCCGGCCTCTGCAAAAGAA 60.603 57.895 0.00 0.00 40.13 2.52
4477 10320 1.178534 CCCGGCCTCTGCAAAAGAAA 61.179 55.000 0.00 0.00 40.13 2.52
4478 10321 0.673437 CCGGCCTCTGCAAAAGAAAA 59.327 50.000 0.00 0.00 40.13 2.29
4479 10322 1.068434 CCGGCCTCTGCAAAAGAAAAA 59.932 47.619 0.00 0.00 40.13 1.94
4510 10353 3.573558 GCCAAACGGATCAGCGAA 58.426 55.556 0.00 0.00 0.00 4.70
4511 10354 1.425428 GCCAAACGGATCAGCGAAG 59.575 57.895 0.00 0.00 0.00 3.79
4512 10355 1.298859 GCCAAACGGATCAGCGAAGT 61.299 55.000 0.00 0.00 0.00 3.01
4513 10356 2.004583 CCAAACGGATCAGCGAAGTA 57.995 50.000 0.00 0.00 0.00 2.24
4514 10357 1.927174 CCAAACGGATCAGCGAAGTAG 59.073 52.381 0.00 0.00 0.00 2.57
4515 10358 1.927174 CAAACGGATCAGCGAAGTAGG 59.073 52.381 0.00 0.00 0.00 3.18
4516 10359 1.471119 AACGGATCAGCGAAGTAGGA 58.529 50.000 0.00 0.00 0.00 2.94
4517 10360 1.025812 ACGGATCAGCGAAGTAGGAG 58.974 55.000 0.00 0.00 0.00 3.69
4518 10361 0.312416 CGGATCAGCGAAGTAGGAGG 59.688 60.000 0.00 0.00 0.00 4.30
4519 10362 1.693627 GGATCAGCGAAGTAGGAGGA 58.306 55.000 0.00 0.00 0.00 3.71
4520 10363 2.032620 GGATCAGCGAAGTAGGAGGAA 58.967 52.381 0.00 0.00 0.00 3.36
4521 10364 2.223852 GGATCAGCGAAGTAGGAGGAAC 60.224 54.545 0.00 0.00 0.00 3.62
4523 10366 3.361281 TCAGCGAAGTAGGAGGAACTA 57.639 47.619 0.00 0.00 41.55 2.24
4524 10367 3.015327 TCAGCGAAGTAGGAGGAACTAC 58.985 50.000 0.00 0.00 41.55 2.73
4525 10368 2.099427 CAGCGAAGTAGGAGGAACTACC 59.901 54.545 0.00 0.00 43.28 3.18
4526 10369 2.097825 GCGAAGTAGGAGGAACTACCA 58.902 52.381 0.00 0.00 43.28 3.25
4527 10370 2.159268 GCGAAGTAGGAGGAACTACCAC 60.159 54.545 0.00 0.00 43.28 4.16
4528 10371 2.426381 CGAAGTAGGAGGAACTACCACC 59.574 54.545 0.00 0.00 43.28 4.61
4532 10375 2.768046 GGAGGAACTACCACCACCA 58.232 57.895 0.00 0.00 46.47 4.17
4533 10376 0.613777 GGAGGAACTACCACCACCAG 59.386 60.000 0.00 0.00 46.47 4.00
4534 10377 1.640917 GAGGAACTACCACCACCAGA 58.359 55.000 0.00 0.00 41.55 3.86
4535 10378 1.550976 GAGGAACTACCACCACCAGAG 59.449 57.143 0.00 0.00 41.55 3.35
4536 10379 1.149288 AGGAACTACCACCACCAGAGA 59.851 52.381 0.00 0.00 42.04 3.10
4537 10380 1.275573 GGAACTACCACCACCAGAGAC 59.724 57.143 0.00 0.00 38.79 3.36
4538 10381 1.275573 GAACTACCACCACCAGAGACC 59.724 57.143 0.00 0.00 0.00 3.85
4539 10382 0.544595 ACTACCACCACCAGAGACCC 60.545 60.000 0.00 0.00 0.00 4.46
4540 10383 1.229400 TACCACCACCAGAGACCCC 60.229 63.158 0.00 0.00 0.00 4.95
4541 10384 2.038545 TACCACCACCAGAGACCCCA 62.039 60.000 0.00 0.00 0.00 4.96
4542 10385 2.750350 CACCACCAGAGACCCCAC 59.250 66.667 0.00 0.00 0.00 4.61
4543 10386 2.146724 CACCACCAGAGACCCCACA 61.147 63.158 0.00 0.00 0.00 4.17
4544 10387 1.385347 ACCACCAGAGACCCCACAA 60.385 57.895 0.00 0.00 0.00 3.33
4545 10388 1.376466 CCACCAGAGACCCCACAAG 59.624 63.158 0.00 0.00 0.00 3.16
4546 10389 1.376466 CACCAGAGACCCCACAAGG 59.624 63.158 0.00 0.00 0.00 3.61
4547 10390 1.127567 CACCAGAGACCCCACAAGGA 61.128 60.000 0.00 0.00 38.24 3.36
4548 10391 1.128188 ACCAGAGACCCCACAAGGAC 61.128 60.000 0.00 0.00 38.24 3.85
4549 10392 0.838122 CCAGAGACCCCACAAGGACT 60.838 60.000 0.00 0.00 38.24 3.85
4550 10393 0.322975 CAGAGACCCCACAAGGACTG 59.677 60.000 0.00 0.00 38.24 3.51
4551 10394 1.003233 GAGACCCCACAAGGACTGC 60.003 63.158 0.00 0.00 38.24 4.40
4552 10395 1.768684 GAGACCCCACAAGGACTGCA 61.769 60.000 0.00 0.00 38.24 4.41
4553 10396 1.150536 GACCCCACAAGGACTGCAA 59.849 57.895 0.00 0.00 38.24 4.08
4554 10397 0.467290 GACCCCACAAGGACTGCAAA 60.467 55.000 0.00 0.00 38.24 3.68
4555 10398 0.032615 ACCCCACAAGGACTGCAAAA 60.033 50.000 0.00 0.00 38.24 2.44
4556 10399 1.118838 CCCCACAAGGACTGCAAAAA 58.881 50.000 0.00 0.00 38.24 1.94
4577 10420 2.151295 GTTCTCCAAGAACGACGCC 58.849 57.895 4.24 0.00 44.22 5.68
4578 10421 0.319641 GTTCTCCAAGAACGACGCCT 60.320 55.000 4.24 0.00 44.22 5.52
4579 10422 0.038526 TTCTCCAAGAACGACGCCTC 60.039 55.000 0.00 0.00 0.00 4.70
4580 10423 1.446272 CTCCAAGAACGACGCCTCC 60.446 63.158 0.00 0.00 0.00 4.30
4581 10424 2.154798 CTCCAAGAACGACGCCTCCA 62.155 60.000 0.00 0.00 0.00 3.86
4582 10425 1.301401 CCAAGAACGACGCCTCCAA 60.301 57.895 0.00 0.00 0.00 3.53
4583 10426 1.291877 CCAAGAACGACGCCTCCAAG 61.292 60.000 0.00 0.00 0.00 3.61
4584 10427 0.319555 CAAGAACGACGCCTCCAAGA 60.320 55.000 0.00 0.00 0.00 3.02
4585 10428 0.391597 AAGAACGACGCCTCCAAGAA 59.608 50.000 0.00 0.00 0.00 2.52
4586 10429 0.038159 AGAACGACGCCTCCAAGAAG 60.038 55.000 0.00 0.00 0.00 2.85
4587 10430 1.004918 AACGACGCCTCCAAGAAGG 60.005 57.895 0.00 0.00 39.62 3.46
4588 10431 1.469335 AACGACGCCTCCAAGAAGGA 61.469 55.000 0.00 0.00 46.75 3.36
4596 10439 3.015516 TCCAAGAAGGAAACCGTGC 57.984 52.632 0.00 0.00 45.65 5.34
4597 10440 0.181587 TCCAAGAAGGAAACCGTGCA 59.818 50.000 0.00 0.00 45.65 4.57
4598 10441 0.310854 CCAAGAAGGAAACCGTGCAC 59.689 55.000 6.82 6.82 41.22 4.57
4599 10442 0.310854 CAAGAAGGAAACCGTGCACC 59.689 55.000 12.15 0.00 0.00 5.01
4600 10443 0.106918 AAGAAGGAAACCGTGCACCA 60.107 50.000 12.15 0.00 0.00 4.17
4601 10444 0.106918 AGAAGGAAACCGTGCACCAA 60.107 50.000 12.15 0.00 0.00 3.67
4602 10445 0.030235 GAAGGAAACCGTGCACCAAC 59.970 55.000 12.15 0.00 0.00 3.77
4603 10446 0.681564 AAGGAAACCGTGCACCAACA 60.682 50.000 12.15 0.00 0.00 3.33
4604 10447 1.065109 GGAAACCGTGCACCAACAC 59.935 57.895 12.15 0.30 37.19 3.32
4605 10448 1.658686 GGAAACCGTGCACCAACACA 61.659 55.000 12.15 0.00 40.73 3.72
4606 10449 0.248458 GAAACCGTGCACCAACACAG 60.248 55.000 12.15 0.00 40.73 3.66
4607 10450 0.963355 AAACCGTGCACCAACACAGT 60.963 50.000 12.15 0.00 40.73 3.55
4608 10451 1.373590 AACCGTGCACCAACACAGTC 61.374 55.000 12.15 0.00 40.73 3.51
4609 10452 2.625906 CGTGCACCAACACAGTCG 59.374 61.111 12.15 0.00 40.73 4.18
4610 10453 2.171079 CGTGCACCAACACAGTCGT 61.171 57.895 12.15 0.00 40.73 4.34
4611 10454 1.641677 GTGCACCAACACAGTCGTC 59.358 57.895 5.22 0.00 40.40 4.20
4612 10455 1.880796 TGCACCAACACAGTCGTCG 60.881 57.895 0.00 0.00 0.00 5.12
4613 10456 2.928361 CACCAACACAGTCGTCGC 59.072 61.111 0.00 0.00 0.00 5.19
4614 10457 2.279918 ACCAACACAGTCGTCGCC 60.280 61.111 0.00 0.00 0.00 5.54
4615 10458 2.029073 CCAACACAGTCGTCGCCT 59.971 61.111 0.00 0.00 0.00 5.52
4616 10459 2.310233 CCAACACAGTCGTCGCCTG 61.310 63.158 0.94 0.94 36.01 4.85
4617 10460 1.299850 CAACACAGTCGTCGCCTGA 60.300 57.895 10.73 0.00 34.04 3.86
4618 10461 0.667487 CAACACAGTCGTCGCCTGAT 60.667 55.000 10.73 0.00 34.04 2.90
4619 10462 0.388649 AACACAGTCGTCGCCTGATC 60.389 55.000 10.73 0.00 34.04 2.92
4620 10463 1.212751 CACAGTCGTCGCCTGATCA 59.787 57.895 10.73 0.00 34.04 2.92
4621 10464 1.073216 CACAGTCGTCGCCTGATCAC 61.073 60.000 10.73 0.00 34.04 3.06
4622 10465 1.212751 CAGTCGTCGCCTGATCACA 59.787 57.895 0.00 0.00 31.38 3.58
4623 10466 0.799917 CAGTCGTCGCCTGATCACAG 60.800 60.000 0.00 0.00 43.12 3.66
4624 10467 0.960861 AGTCGTCGCCTGATCACAGA 60.961 55.000 0.00 0.00 46.03 3.41
4625 10468 0.101399 GTCGTCGCCTGATCACAGAT 59.899 55.000 0.00 0.00 46.03 2.90
4626 10469 0.382158 TCGTCGCCTGATCACAGATC 59.618 55.000 0.00 0.15 46.03 2.75
4627 10470 0.101219 CGTCGCCTGATCACAGATCA 59.899 55.000 9.15 9.15 46.03 2.92
4628 10471 1.269465 CGTCGCCTGATCACAGATCAT 60.269 52.381 9.86 0.00 46.03 2.45
4629 10472 2.133553 GTCGCCTGATCACAGATCATG 58.866 52.381 9.86 8.63 46.03 3.07
4630 10473 1.069668 TCGCCTGATCACAGATCATGG 59.930 52.381 9.86 13.13 46.03 3.66
4631 10474 1.876837 CGCCTGATCACAGATCATGGG 60.877 57.143 18.44 15.68 46.03 4.00
4632 10475 1.142465 GCCTGATCACAGATCATGGGT 59.858 52.381 18.44 0.00 46.03 4.51
4633 10476 2.422519 GCCTGATCACAGATCATGGGTT 60.423 50.000 18.44 0.00 46.03 4.11
4634 10477 3.894759 CCTGATCACAGATCATGGGTTT 58.105 45.455 9.86 0.00 46.03 3.27
4635 10478 4.275810 CCTGATCACAGATCATGGGTTTT 58.724 43.478 9.86 0.00 46.03 2.43
4636 10479 4.337555 CCTGATCACAGATCATGGGTTTTC 59.662 45.833 9.86 0.00 46.03 2.29
4637 10480 4.920999 TGATCACAGATCATGGGTTTTCA 58.079 39.130 5.63 0.00 32.41 2.69
4638 10481 4.701651 TGATCACAGATCATGGGTTTTCAC 59.298 41.667 5.63 0.00 32.41 3.18
4639 10482 3.420893 TCACAGATCATGGGTTTTCACC 58.579 45.455 0.00 0.00 43.37 4.02
4651 10494 4.569761 GGTTTTCACCCTGAAGAAAGTC 57.430 45.455 0.00 0.00 37.70 3.01
4652 10495 4.207955 GGTTTTCACCCTGAAGAAAGTCT 58.792 43.478 0.00 0.00 37.70 3.24
4653 10496 4.036852 GGTTTTCACCCTGAAGAAAGTCTG 59.963 45.833 0.00 0.00 37.70 3.51
4654 10497 4.771114 TTTCACCCTGAAGAAAGTCTGA 57.229 40.909 0.00 0.00 37.70 3.27
4655 10498 3.753294 TCACCCTGAAGAAAGTCTGAC 57.247 47.619 0.00 0.00 0.00 3.51
4656 10499 3.309296 TCACCCTGAAGAAAGTCTGACT 58.691 45.455 4.06 4.06 0.00 3.41
4657 10500 3.070159 TCACCCTGAAGAAAGTCTGACTG 59.930 47.826 11.71 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
115 128 3.016736 ACGACATGTTTCCCCATGATTC 58.983 45.455 0.00 0.00 43.99 2.52
154 167 4.778143 AGCGCACCGGATTCCACC 62.778 66.667 9.46 0.00 0.00 4.61
176 189 1.942223 CGCTGTCGTCGTGTTGTCA 60.942 57.895 0.00 0.00 0.00 3.58
237 264 1.834263 AGCGACCCTCTTAGCTTCAAT 59.166 47.619 0.00 0.00 36.41 2.57
322 349 1.340405 GCTTGAAGGAATGCTCCCAGA 60.340 52.381 0.00 0.00 43.64 3.86
458 485 1.604278 GAACTGACCCAACAAGCTCAC 59.396 52.381 0.00 0.00 0.00 3.51
567 594 6.179504 TGAAGCGTTGTTAGTTGTGTTAAA 57.820 33.333 0.00 0.00 0.00 1.52
576 603 6.398918 ACTATGAAGATGAAGCGTTGTTAGT 58.601 36.000 0.00 0.00 0.00 2.24
585 612 8.213518 TGGATTTGTTACTATGAAGATGAAGC 57.786 34.615 0.00 0.00 0.00 3.86
599 626 5.048713 GGAATGGATCCGATGGATTTGTTAC 60.049 44.000 7.39 0.00 43.27 2.50
616 643 5.444744 TTTCTTATTTCCCGAGGAATGGA 57.555 39.130 6.25 0.00 41.71 3.41
621 648 5.576128 ACCAAATTTCTTATTTCCCGAGGA 58.424 37.500 0.00 0.00 0.00 3.71
661 688 6.594159 CCTGTAAGTTTGTTCAATCCGAGTAT 59.406 38.462 0.00 0.00 0.00 2.12
662 689 5.929992 CCTGTAAGTTTGTTCAATCCGAGTA 59.070 40.000 0.00 0.00 0.00 2.59
721 748 3.306088 CCCTAGAGAAGCAAAGTCGTGAA 60.306 47.826 0.00 0.00 0.00 3.18
729 756 3.830755 AGTCGTTACCCTAGAGAAGCAAA 59.169 43.478 0.00 0.00 0.00 3.68
733 760 4.701171 AGACAAGTCGTTACCCTAGAGAAG 59.299 45.833 0.00 0.00 34.09 2.85
740 767 0.320697 GCCAGACAAGTCGTTACCCT 59.679 55.000 0.00 0.00 34.09 4.34
789 3843 6.049790 AGAAAGCGACAAGTTCTCTAAGTTT 58.950 36.000 0.00 0.00 0.00 2.66
795 3849 4.945246 TGTAAGAAAGCGACAAGTTCTCT 58.055 39.130 0.00 0.00 31.26 3.10
799 3853 5.554822 TTGTTGTAAGAAAGCGACAAGTT 57.445 34.783 0.00 0.00 34.97 2.66
801 3855 5.569413 AGTTTGTTGTAAGAAAGCGACAAG 58.431 37.500 0.00 0.00 39.34 3.16
805 3859 6.238266 CCTGTTAGTTTGTTGTAAGAAAGCGA 60.238 38.462 0.00 0.00 0.00 4.93
806 3860 5.907391 CCTGTTAGTTTGTTGTAAGAAAGCG 59.093 40.000 0.00 0.00 0.00 4.68
814 3868 6.461788 GGAATTTGGCCTGTTAGTTTGTTGTA 60.462 38.462 3.32 0.00 0.00 2.41
821 3875 3.181423 TGGAGGAATTTGGCCTGTTAGTT 60.181 43.478 3.32 0.00 35.44 2.24
834 3888 3.442076 ACGACCTAGTTCTGGAGGAATT 58.558 45.455 0.00 0.00 36.24 2.17
837 3891 2.561419 CAAACGACCTAGTTCTGGAGGA 59.439 50.000 0.00 0.00 36.61 3.71
861 3915 5.131977 ACCAAGCCCCAATTTCTTTAAGTTT 59.868 36.000 0.00 0.00 0.00 2.66
863 3917 4.040339 CACCAAGCCCCAATTTCTTTAAGT 59.960 41.667 0.00 0.00 0.00 2.24
868 3922 2.397044 TCACCAAGCCCCAATTTCTT 57.603 45.000 0.00 0.00 0.00 2.52
883 3998 4.202080 GGGACCTGTTAGTTTGTTTTCACC 60.202 45.833 0.00 0.00 0.00 4.02
907 4022 8.536175 GGTTAAATTCCATAGATTGTTTGGGAA 58.464 33.333 0.00 0.00 38.63 3.97
955 4070 4.082408 GTGGCCAGAAAGTTGGTTATTACC 60.082 45.833 5.11 0.00 45.26 2.85
958 4073 3.571590 TGTGGCCAGAAAGTTGGTTATT 58.428 40.909 5.11 0.00 40.49 1.40
972 4087 2.531428 TCTGGTGGGATGTGGCCA 60.531 61.111 0.00 0.00 0.00 5.36
975 4090 0.467384 CTAGCTCTGGTGGGATGTGG 59.533 60.000 0.00 0.00 0.00 4.17
986 4101 6.320494 AGTTTATCATACGACCTAGCTCTG 57.680 41.667 0.00 0.00 0.00 3.35
987 4102 6.963083 AAGTTTATCATACGACCTAGCTCT 57.037 37.500 0.00 0.00 0.00 4.09
1015 4130 4.142271 TGCGTTTTCACCAAGAAACAAGAT 60.142 37.500 0.00 0.00 45.48 2.40
1016 4131 3.191581 TGCGTTTTCACCAAGAAACAAGA 59.808 39.130 0.00 0.00 45.48 3.02
1017 4132 3.506810 TGCGTTTTCACCAAGAAACAAG 58.493 40.909 0.00 0.00 45.48 3.16
1022 4137 5.250235 TGTTAATGCGTTTTCACCAAGAA 57.750 34.783 0.00 0.00 0.00 2.52
1051 4166 8.237267 GGTCAAGTTACATAGATTGTTTGGAAG 58.763 37.037 0.00 0.00 39.87 3.46
1057 4316 8.691661 AGTTTGGTCAAGTTACATAGATTGTT 57.308 30.769 0.00 0.00 39.87 2.83
1058 4317 7.936847 TGAGTTTGGTCAAGTTACATAGATTGT 59.063 33.333 0.00 0.00 42.62 2.71
1061 4320 7.680730 AGTGAGTTTGGTCAAGTTACATAGAT 58.319 34.615 0.00 0.00 28.51 1.98
1062 4321 7.062749 AGTGAGTTTGGTCAAGTTACATAGA 57.937 36.000 0.00 0.00 28.51 1.98
1071 4330 8.200792 AGCTCTAATATAGTGAGTTTGGTCAAG 58.799 37.037 0.00 0.00 0.00 3.02
1103 4362 4.215613 GGATGTGTCCAGAAAGTTGGTTAC 59.784 45.833 0.00 0.00 44.42 2.50
1135 4394 8.871629 ATCTCTAAGTTCATCATACGACCTAT 57.128 34.615 0.00 0.00 0.00 2.57
1160 4563 5.284861 TGTGTTGTAACTAAGGCTCAAGA 57.715 39.130 4.02 0.00 0.00 3.02
1245 4799 3.442273 TGTGTCCAGAAAGTTGGTTGAAC 59.558 43.478 0.00 0.00 39.35 3.18
1318 4873 5.645497 GCAAGTCACCAGAGAGATTGTTAAT 59.355 40.000 0.00 0.00 0.00 1.40
1388 4943 0.534873 ACCAACCAAGTTGTTGCCAC 59.465 50.000 1.45 0.00 43.36 5.01
1462 5032 3.574354 ATCTCCTTCCAGCTGATTTCC 57.426 47.619 17.39 0.00 0.00 3.13
1463 5033 6.997476 AGAAATATCTCCTTCCAGCTGATTTC 59.003 38.462 17.39 17.43 33.16 2.17
1464 5034 6.771749 CAGAAATATCTCCTTCCAGCTGATTT 59.228 38.462 17.39 9.54 32.03 2.17
1465 5035 6.100859 TCAGAAATATCTCCTTCCAGCTGATT 59.899 38.462 17.39 0.00 32.03 2.57
1466 5036 5.605908 TCAGAAATATCTCCTTCCAGCTGAT 59.394 40.000 17.39 0.59 32.03 2.90
1467 5037 4.964897 TCAGAAATATCTCCTTCCAGCTGA 59.035 41.667 17.39 0.00 32.03 4.26
1468 5038 5.070180 TCTCAGAAATATCTCCTTCCAGCTG 59.930 44.000 6.78 6.78 32.03 4.24
1469 5039 5.215069 TCTCAGAAATATCTCCTTCCAGCT 58.785 41.667 0.00 0.00 32.03 4.24
1470 5040 5.543507 TCTCAGAAATATCTCCTTCCAGC 57.456 43.478 0.00 0.00 32.03 4.85
1471 5041 6.465948 CCATCTCAGAAATATCTCCTTCCAG 58.534 44.000 0.00 0.00 32.03 3.86
1472 5042 5.309020 CCCATCTCAGAAATATCTCCTTCCA 59.691 44.000 0.00 0.00 32.03 3.53
1473 5043 5.545723 TCCCATCTCAGAAATATCTCCTTCC 59.454 44.000 0.00 0.00 32.03 3.46
1474 5044 6.269769 ACTCCCATCTCAGAAATATCTCCTTC 59.730 42.308 0.00 0.00 32.03 3.46
1475 5045 6.149616 ACTCCCATCTCAGAAATATCTCCTT 58.850 40.000 0.00 0.00 32.03 3.36
1476 5046 5.725490 ACTCCCATCTCAGAAATATCTCCT 58.275 41.667 0.00 0.00 32.03 3.69
1485 5055 1.909302 GGGTGAACTCCCATCTCAGAA 59.091 52.381 7.02 0.00 46.30 3.02
1541 5111 5.458041 ACCATCAGAAAGTTGACCAAATG 57.542 39.130 0.00 0.00 0.00 2.32
1608 5178 8.821686 TTTGTGGTATGAATCCAGTGATATTT 57.178 30.769 0.00 0.00 35.49 1.40
1712 5282 3.558931 TGAACAATGCCGATAGACCAT 57.441 42.857 0.00 0.00 39.76 3.55
1765 5336 5.258051 TGTTCCAATTTCCTGTGGTATACC 58.742 41.667 15.50 15.50 36.23 2.73
1905 5476 0.861837 GTTCGATAGGAATGCTGCCG 59.138 55.000 0.00 0.00 36.92 5.69
2010 5581 2.462456 TCAAGTTCTCGAGCATGCTT 57.538 45.000 23.61 5.39 0.00 3.91
2038 5609 1.936203 GCTGCCGTTCAATGCATTGTT 60.936 47.619 32.67 1.90 38.84 2.83
2288 5865 5.587844 GTGATGAGCACAAGAGTTATTGGAT 59.412 40.000 0.00 0.00 46.91 3.41
2290 5867 5.227238 GTGATGAGCACAAGAGTTATTGG 57.773 43.478 0.00 0.00 46.91 3.16
2443 6026 2.940994 TCACCAAAATTCTCCGTGGA 57.059 45.000 0.00 0.00 35.04 4.02
2644 6227 2.307098 CCAGAAATCTTCCCTGAGGTGT 59.693 50.000 0.00 0.00 0.00 4.16
2720 6303 9.507329 TTCTTATCCAATCCAATTCAGCTATAC 57.493 33.333 0.00 0.00 0.00 1.47
2967 6550 9.081997 CACACAGATCTAACAGAAATAGAGTTC 57.918 37.037 0.00 0.00 33.17 3.01
2969 6552 8.128322 ACACACAGATCTAACAGAAATAGAGT 57.872 34.615 0.00 0.00 33.17 3.24
2970 6553 8.867935 CAACACACAGATCTAACAGAAATAGAG 58.132 37.037 0.00 0.00 33.17 2.43
3002 6587 5.786401 ATTTGATCGGACGAGAAAGAAAG 57.214 39.130 0.00 0.00 0.00 2.62
3031 6616 7.362574 GCACCCTTAGCAGAATAAACATACAAA 60.363 37.037 0.00 0.00 0.00 2.83
3034 6619 5.008712 GGCACCCTTAGCAGAATAAACATAC 59.991 44.000 0.00 0.00 0.00 2.39
3054 6639 1.651987 TATTCGCTACTGCTTGGCAC 58.348 50.000 0.00 0.00 36.97 5.01
3197 6783 4.752101 ACTGCTAAACATATCGGCTCAATC 59.248 41.667 0.00 0.00 0.00 2.67
3237 6823 5.485353 TGAATCTAGAGGACCAGACAACAAT 59.515 40.000 0.00 0.00 0.00 2.71
3245 6831 5.930837 AGAAACTGAATCTAGAGGACCAG 57.069 43.478 0.00 5.40 35.48 4.00
3277 6863 8.336235 ACCAATATTGAAGGGTTAGATTTCTCA 58.664 33.333 17.23 0.00 0.00 3.27
3349 6936 5.352284 CGTGAGCACTCCAAAACTATAGAT 58.648 41.667 6.78 0.00 0.00 1.98
3477 7065 0.321122 CTTTGCTTCGGACCTCAGCT 60.321 55.000 11.85 0.00 34.42 4.24
3487 7075 5.729883 CGATCACTTTGAATACTTTGCTTCG 59.270 40.000 0.00 0.00 0.00 3.79
3488 7076 5.509622 GCGATCACTTTGAATACTTTGCTTC 59.490 40.000 0.00 0.00 0.00 3.86
3521 7109 2.639065 GATTGGGTTCTATGCACCGAA 58.361 47.619 0.00 0.00 36.56 4.30
3537 7125 1.131126 GTTGGACAGCGTGATGGATTG 59.869 52.381 0.00 0.00 0.00 2.67
3550 7138 0.032403 GCTTGCTGCATTGTTGGACA 59.968 50.000 1.84 0.00 42.31 4.02
3564 7152 2.035066 AGTGAACACCTTGATTGCTTGC 59.965 45.455 1.11 0.00 0.00 4.01
3761 7351 3.936453 TCCATCGCTTACAACCAACATAC 59.064 43.478 0.00 0.00 0.00 2.39
3919 7532 1.526887 CAGCACGCCAATATAACTCGG 59.473 52.381 0.00 0.00 0.00 4.63
3920 7533 2.469826 TCAGCACGCCAATATAACTCG 58.530 47.619 0.00 0.00 0.00 4.18
3922 7535 5.126067 AGAAATCAGCACGCCAATATAACT 58.874 37.500 0.00 0.00 0.00 2.24
3977 7590 9.559958 CAGTTGAAGGCTAAATATTTGTAACAG 57.440 33.333 11.05 1.02 0.00 3.16
3983 7596 8.050778 TGTACCAGTTGAAGGCTAAATATTTG 57.949 34.615 11.05 2.59 0.00 2.32
4038 9725 3.879295 GCATTCTGATGGCTACTGCTTTA 59.121 43.478 0.00 0.00 39.59 1.85
4039 9726 2.686915 GCATTCTGATGGCTACTGCTTT 59.313 45.455 0.00 0.00 39.59 3.51
4040 9727 2.092538 AGCATTCTGATGGCTACTGCTT 60.093 45.455 2.20 0.00 35.06 3.91
4041 9728 1.489649 AGCATTCTGATGGCTACTGCT 59.510 47.619 2.20 0.00 39.59 4.24
4042 9729 1.964552 AGCATTCTGATGGCTACTGC 58.035 50.000 2.20 0.00 33.72 4.40
4104 9863 5.473504 AGTGATCCACATTTTGTCCTGTTAC 59.526 40.000 0.00 0.00 36.74 2.50
4155 9914 2.037208 GGCTTGGGGGCTGCTTAA 59.963 61.111 0.00 0.00 37.53 1.85
4156 9915 4.060667 GGGCTTGGGGGCTGCTTA 62.061 66.667 0.00 0.00 40.65 3.09
4201 10042 2.049433 GTGTGCGACCGTACTGCT 60.049 61.111 11.49 0.00 0.00 4.24
4202 10043 2.355363 TGTGTGCGACCGTACTGC 60.355 61.111 11.49 5.75 0.00 4.40
4211 10052 1.299544 CGTACCAGTGTGTGTGCGA 60.300 57.895 3.13 0.00 42.10 5.10
4219 10060 0.318445 GAGTGCGTTCGTACCAGTGT 60.318 55.000 9.49 0.00 0.00 3.55
4224 10065 0.172803 AGGATGAGTGCGTTCGTACC 59.827 55.000 9.49 3.21 0.00 3.34
4225 10066 1.992170 AAGGATGAGTGCGTTCGTAC 58.008 50.000 5.39 5.39 0.00 3.67
4228 10069 3.616821 TCAATTAAGGATGAGTGCGTTCG 59.383 43.478 0.00 0.00 0.00 3.95
4335 10178 2.777832 ACCAAGCTGAGATCACTTCC 57.222 50.000 0.00 0.00 0.00 3.46
4374 10217 7.403231 AGGAAAATCAGTTAAGGATGAGAGGTA 59.597 37.037 0.00 0.00 0.00 3.08
4433 10276 9.378551 GGTGTAATTGATATCCGCTTGATATTA 57.621 33.333 0.00 1.71 44.89 0.98
4434 10277 7.336931 GGGTGTAATTGATATCCGCTTGATATT 59.663 37.037 0.00 0.00 44.89 1.28
4436 10279 6.170506 GGGTGTAATTGATATCCGCTTGATA 58.829 40.000 0.00 0.00 40.20 2.15
4437 10280 5.003804 GGGTGTAATTGATATCCGCTTGAT 58.996 41.667 0.00 0.00 37.49 2.57
4438 10281 4.385825 GGGTGTAATTGATATCCGCTTGA 58.614 43.478 0.00 0.00 0.00 3.02
4439 10282 3.186409 CGGGTGTAATTGATATCCGCTTG 59.814 47.826 0.00 0.00 0.00 4.01
4440 10283 3.399330 CGGGTGTAATTGATATCCGCTT 58.601 45.455 0.00 0.00 0.00 4.68
4441 10284 2.289444 CCGGGTGTAATTGATATCCGCT 60.289 50.000 0.00 0.00 35.28 5.52
4442 10285 2.073816 CCGGGTGTAATTGATATCCGC 58.926 52.381 0.00 0.00 35.28 5.54
4443 10286 2.073816 GCCGGGTGTAATTGATATCCG 58.926 52.381 2.18 3.87 36.23 4.18
4444 10287 2.039879 AGGCCGGGTGTAATTGATATCC 59.960 50.000 2.18 0.00 0.00 2.59
4445 10288 3.008049 AGAGGCCGGGTGTAATTGATATC 59.992 47.826 2.18 0.00 0.00 1.63
4446 10289 2.979678 AGAGGCCGGGTGTAATTGATAT 59.020 45.455 2.18 0.00 0.00 1.63
4447 10290 2.104111 CAGAGGCCGGGTGTAATTGATA 59.896 50.000 2.18 0.00 0.00 2.15
4448 10291 1.134098 CAGAGGCCGGGTGTAATTGAT 60.134 52.381 2.18 0.00 0.00 2.57
4449 10292 0.251916 CAGAGGCCGGGTGTAATTGA 59.748 55.000 2.18 0.00 0.00 2.57
4450 10293 1.376609 GCAGAGGCCGGGTGTAATTG 61.377 60.000 2.18 0.00 0.00 2.32
4451 10294 1.077716 GCAGAGGCCGGGTGTAATT 60.078 57.895 2.18 0.00 0.00 1.40
4452 10295 1.847798 TTGCAGAGGCCGGGTGTAAT 61.848 55.000 2.18 0.00 40.13 1.89
4453 10296 2.058125 TTTGCAGAGGCCGGGTGTAA 62.058 55.000 2.18 0.00 40.13 2.41
4454 10297 2.058125 TTTTGCAGAGGCCGGGTGTA 62.058 55.000 2.18 0.00 40.13 2.90
4455 10298 3.429372 TTTTGCAGAGGCCGGGTGT 62.429 57.895 2.18 0.00 40.13 4.16
4456 10299 2.597217 TTTTGCAGAGGCCGGGTG 60.597 61.111 2.18 0.00 40.13 4.61
4457 10300 2.282462 CTTTTGCAGAGGCCGGGT 60.282 61.111 2.18 0.00 40.13 5.28
4458 10301 1.178534 TTTCTTTTGCAGAGGCCGGG 61.179 55.000 2.18 0.00 40.13 5.73
4459 10302 0.673437 TTTTCTTTTGCAGAGGCCGG 59.327 50.000 0.00 0.00 40.13 6.13
4460 10303 2.507339 TTTTTCTTTTGCAGAGGCCG 57.493 45.000 0.00 0.00 40.13 6.13
4476 10319 6.074642 CGTTTGGCGTTTTTCTTTTCTTTTT 58.925 32.000 0.00 0.00 35.54 1.94
4477 10320 5.390040 CCGTTTGGCGTTTTTCTTTTCTTTT 60.390 36.000 0.00 0.00 39.32 2.27
4478 10321 4.092237 CCGTTTGGCGTTTTTCTTTTCTTT 59.908 37.500 0.00 0.00 39.32 2.52
4479 10322 3.615056 CCGTTTGGCGTTTTTCTTTTCTT 59.385 39.130 0.00 0.00 39.32 2.52
4480 10323 3.119424 TCCGTTTGGCGTTTTTCTTTTCT 60.119 39.130 0.00 0.00 39.32 2.52
4481 10324 3.180613 TCCGTTTGGCGTTTTTCTTTTC 58.819 40.909 0.00 0.00 39.32 2.29
4482 10325 3.233684 TCCGTTTGGCGTTTTTCTTTT 57.766 38.095 0.00 0.00 39.32 2.27
4483 10326 2.943449 TCCGTTTGGCGTTTTTCTTT 57.057 40.000 0.00 0.00 39.32 2.52
4484 10327 2.359531 TGATCCGTTTGGCGTTTTTCTT 59.640 40.909 0.00 0.00 39.32 2.52
4485 10328 1.950909 TGATCCGTTTGGCGTTTTTCT 59.049 42.857 0.00 0.00 39.32 2.52
4486 10329 2.315901 CTGATCCGTTTGGCGTTTTTC 58.684 47.619 0.00 0.00 39.32 2.29
4487 10330 1.601914 GCTGATCCGTTTGGCGTTTTT 60.602 47.619 0.00 0.00 39.32 1.94
4488 10331 0.039527 GCTGATCCGTTTGGCGTTTT 60.040 50.000 0.00 0.00 39.32 2.43
4489 10332 1.579429 GCTGATCCGTTTGGCGTTT 59.421 52.632 0.00 0.00 39.32 3.60
4490 10333 2.677003 CGCTGATCCGTTTGGCGTT 61.677 57.895 0.00 0.00 40.78 4.84
4491 10334 3.118454 CGCTGATCCGTTTGGCGT 61.118 61.111 0.00 0.00 40.78 5.68
4492 10335 2.296692 CTTCGCTGATCCGTTTGGCG 62.297 60.000 0.00 0.00 45.93 5.69
4493 10336 1.298859 ACTTCGCTGATCCGTTTGGC 61.299 55.000 0.00 0.00 34.14 4.52
4494 10337 1.927174 CTACTTCGCTGATCCGTTTGG 59.073 52.381 0.00 0.00 0.00 3.28
4495 10338 1.927174 CCTACTTCGCTGATCCGTTTG 59.073 52.381 0.00 0.00 0.00 2.93
4496 10339 1.822990 TCCTACTTCGCTGATCCGTTT 59.177 47.619 0.00 0.00 0.00 3.60
4497 10340 1.405821 CTCCTACTTCGCTGATCCGTT 59.594 52.381 0.00 0.00 0.00 4.44
4498 10341 1.025812 CTCCTACTTCGCTGATCCGT 58.974 55.000 0.00 0.00 0.00 4.69
4499 10342 0.312416 CCTCCTACTTCGCTGATCCG 59.688 60.000 0.00 0.00 0.00 4.18
4500 10343 1.693627 TCCTCCTACTTCGCTGATCC 58.306 55.000 0.00 0.00 0.00 3.36
4501 10344 2.691011 AGTTCCTCCTACTTCGCTGATC 59.309 50.000 0.00 0.00 0.00 2.92
4502 10345 2.741145 AGTTCCTCCTACTTCGCTGAT 58.259 47.619 0.00 0.00 0.00 2.90
4503 10346 2.217510 AGTTCCTCCTACTTCGCTGA 57.782 50.000 0.00 0.00 0.00 4.26
4504 10347 2.099427 GGTAGTTCCTCCTACTTCGCTG 59.901 54.545 0.00 0.00 37.92 5.18
4505 10348 2.291411 TGGTAGTTCCTCCTACTTCGCT 60.291 50.000 0.00 0.00 37.92 4.93
4506 10349 2.097825 TGGTAGTTCCTCCTACTTCGC 58.902 52.381 0.00 0.00 37.92 4.70
4507 10350 2.426381 GGTGGTAGTTCCTCCTACTTCG 59.574 54.545 0.00 0.00 44.12 3.79
4508 10351 3.195182 GTGGTGGTAGTTCCTCCTACTTC 59.805 52.174 8.21 0.00 46.71 3.01
4509 10352 3.171528 GTGGTGGTAGTTCCTCCTACTT 58.828 50.000 8.21 0.00 46.71 2.24
4510 10353 2.559252 GGTGGTGGTAGTTCCTCCTACT 60.559 54.545 8.21 0.00 46.71 2.57
4511 10354 1.829849 GGTGGTGGTAGTTCCTCCTAC 59.170 57.143 8.21 5.16 46.71 3.18
4512 10355 1.433985 TGGTGGTGGTAGTTCCTCCTA 59.566 52.381 8.21 0.00 46.71 2.94
4513 10356 0.192566 TGGTGGTGGTAGTTCCTCCT 59.807 55.000 8.21 0.00 46.71 3.69
4514 10357 0.613777 CTGGTGGTGGTAGTTCCTCC 59.386 60.000 0.12 0.12 46.75 4.30
4515 10358 1.550976 CTCTGGTGGTGGTAGTTCCTC 59.449 57.143 0.00 0.00 37.07 3.71
4516 10359 1.149288 TCTCTGGTGGTGGTAGTTCCT 59.851 52.381 0.00 0.00 37.07 3.36
4517 10360 1.275573 GTCTCTGGTGGTGGTAGTTCC 59.724 57.143 0.00 0.00 0.00 3.62
4518 10361 1.275573 GGTCTCTGGTGGTGGTAGTTC 59.724 57.143 0.00 0.00 0.00 3.01
4519 10362 1.349067 GGTCTCTGGTGGTGGTAGTT 58.651 55.000 0.00 0.00 0.00 2.24
4520 10363 0.544595 GGGTCTCTGGTGGTGGTAGT 60.545 60.000 0.00 0.00 0.00 2.73
4521 10364 1.265454 GGGGTCTCTGGTGGTGGTAG 61.265 65.000 0.00 0.00 0.00 3.18
4522 10365 1.229400 GGGGTCTCTGGTGGTGGTA 60.229 63.158 0.00 0.00 0.00 3.25
4523 10366 2.529389 GGGGTCTCTGGTGGTGGT 60.529 66.667 0.00 0.00 0.00 4.16
4524 10367 2.529136 TGGGGTCTCTGGTGGTGG 60.529 66.667 0.00 0.00 0.00 4.61
4525 10368 1.705002 TTGTGGGGTCTCTGGTGGTG 61.705 60.000 0.00 0.00 0.00 4.17
4526 10369 1.385347 TTGTGGGGTCTCTGGTGGT 60.385 57.895 0.00 0.00 0.00 4.16
4527 10370 1.376466 CTTGTGGGGTCTCTGGTGG 59.624 63.158 0.00 0.00 0.00 4.61
4528 10371 1.127567 TCCTTGTGGGGTCTCTGGTG 61.128 60.000 0.00 0.00 35.33 4.17
4529 10372 1.128188 GTCCTTGTGGGGTCTCTGGT 61.128 60.000 0.00 0.00 35.33 4.00
4530 10373 0.838122 AGTCCTTGTGGGGTCTCTGG 60.838 60.000 0.00 0.00 35.33 3.86
4531 10374 0.322975 CAGTCCTTGTGGGGTCTCTG 59.677 60.000 0.00 0.00 35.33 3.35
4532 10375 1.484444 GCAGTCCTTGTGGGGTCTCT 61.484 60.000 0.00 0.00 35.33 3.10
4533 10376 1.003233 GCAGTCCTTGTGGGGTCTC 60.003 63.158 0.00 0.00 35.33 3.36
4534 10377 1.352622 TTGCAGTCCTTGTGGGGTCT 61.353 55.000 0.00 0.00 35.33 3.85
4535 10378 0.467290 TTTGCAGTCCTTGTGGGGTC 60.467 55.000 0.00 0.00 35.33 4.46
4536 10379 0.032615 TTTTGCAGTCCTTGTGGGGT 60.033 50.000 0.00 0.00 35.33 4.95
4537 10380 1.118838 TTTTTGCAGTCCTTGTGGGG 58.881 50.000 0.00 0.00 35.33 4.96
4560 10403 0.038526 GAGGCGTCGTTCTTGGAGAA 60.039 55.000 0.00 0.00 0.00 2.87
4561 10404 1.585006 GAGGCGTCGTTCTTGGAGA 59.415 57.895 0.00 0.00 0.00 3.71
4562 10405 1.446272 GGAGGCGTCGTTCTTGGAG 60.446 63.158 0.00 0.00 0.00 3.86
4563 10406 1.750341 TTGGAGGCGTCGTTCTTGGA 61.750 55.000 0.00 0.00 0.00 3.53
4564 10407 1.291877 CTTGGAGGCGTCGTTCTTGG 61.292 60.000 0.00 0.00 0.00 3.61
4565 10408 0.319555 TCTTGGAGGCGTCGTTCTTG 60.320 55.000 0.00 0.00 0.00 3.02
4566 10409 0.391597 TTCTTGGAGGCGTCGTTCTT 59.608 50.000 0.00 0.00 0.00 2.52
4567 10410 0.038159 CTTCTTGGAGGCGTCGTTCT 60.038 55.000 0.00 0.00 0.00 3.01
4568 10411 1.014564 CCTTCTTGGAGGCGTCGTTC 61.015 60.000 0.00 0.00 38.35 3.95
4569 10412 1.004918 CCTTCTTGGAGGCGTCGTT 60.005 57.895 0.00 0.00 38.35 3.85
4570 10413 1.906824 TCCTTCTTGGAGGCGTCGT 60.907 57.895 0.00 0.00 40.56 4.34
4571 10414 2.970639 TCCTTCTTGGAGGCGTCG 59.029 61.111 0.00 0.00 40.56 5.12
4578 10421 0.181587 TGCACGGTTTCCTTCTTGGA 59.818 50.000 0.00 0.00 44.51 3.53
4579 10422 0.310854 GTGCACGGTTTCCTTCTTGG 59.689 55.000 0.00 0.00 37.10 3.61
4580 10423 0.310854 GGTGCACGGTTTCCTTCTTG 59.689 55.000 11.45 0.00 0.00 3.02
4581 10424 0.106918 TGGTGCACGGTTTCCTTCTT 60.107 50.000 11.45 0.00 0.00 2.52
4582 10425 0.106918 TTGGTGCACGGTTTCCTTCT 60.107 50.000 11.45 0.00 0.00 2.85
4583 10426 0.030235 GTTGGTGCACGGTTTCCTTC 59.970 55.000 11.45 0.00 0.00 3.46
4584 10427 0.681564 TGTTGGTGCACGGTTTCCTT 60.682 50.000 11.45 0.00 0.00 3.36
4585 10428 1.077357 TGTTGGTGCACGGTTTCCT 60.077 52.632 11.45 0.00 0.00 3.36
4586 10429 1.065109 GTGTTGGTGCACGGTTTCC 59.935 57.895 11.45 0.00 0.00 3.13
4587 10430 0.248458 CTGTGTTGGTGCACGGTTTC 60.248 55.000 11.45 2.00 41.94 2.78
4588 10431 1.806568 CTGTGTTGGTGCACGGTTT 59.193 52.632 11.45 0.00 41.94 3.27
4589 10432 3.508474 CTGTGTTGGTGCACGGTT 58.492 55.556 11.45 0.00 41.94 4.44
4592 10435 2.089433 GACGACTGTGTTGGTGCACG 62.089 60.000 11.45 0.00 41.94 5.34
4593 10436 1.641677 GACGACTGTGTTGGTGCAC 59.358 57.895 8.80 8.80 39.65 4.57
4594 10437 1.880796 CGACGACTGTGTTGGTGCA 60.881 57.895 0.00 0.00 0.00 4.57
4595 10438 2.928361 CGACGACTGTGTTGGTGC 59.072 61.111 0.00 0.00 0.00 5.01
4596 10439 2.594962 GGCGACGACTGTGTTGGTG 61.595 63.158 0.00 0.00 0.00 4.17
4597 10440 2.279918 GGCGACGACTGTGTTGGT 60.280 61.111 0.00 0.00 0.00 3.67
4598 10441 2.029073 AGGCGACGACTGTGTTGG 59.971 61.111 0.08 0.00 0.00 3.77
4599 10442 0.667487 ATCAGGCGACGACTGTGTTG 60.667 55.000 29.00 5.51 40.10 3.33
4600 10443 0.388649 GATCAGGCGACGACTGTGTT 60.389 55.000 29.00 15.79 40.10 3.32
4601 10444 1.213013 GATCAGGCGACGACTGTGT 59.787 57.895 29.00 19.23 40.10 3.72
4602 10445 1.073216 GTGATCAGGCGACGACTGTG 61.073 60.000 29.00 7.14 40.10 3.66
4603 10446 1.213013 GTGATCAGGCGACGACTGT 59.787 57.895 29.00 17.01 40.10 3.55
4604 10447 0.799917 CTGTGATCAGGCGACGACTG 60.800 60.000 25.10 25.10 40.64 3.51
4605 10448 0.960861 TCTGTGATCAGGCGACGACT 60.961 55.000 0.00 0.00 41.59 4.18
4606 10449 0.101399 ATCTGTGATCAGGCGACGAC 59.899 55.000 0.00 0.00 41.59 4.34
4607 10450 0.382158 GATCTGTGATCAGGCGACGA 59.618 55.000 0.00 0.00 41.59 4.20
4608 10451 0.101219 TGATCTGTGATCAGGCGACG 59.899 55.000 0.00 0.00 41.59 5.12
4609 10452 2.133553 CATGATCTGTGATCAGGCGAC 58.866 52.381 14.35 0.00 41.59 5.19
4610 10453 1.069668 CCATGATCTGTGATCAGGCGA 59.930 52.381 14.37 0.00 41.59 5.54
4611 10454 1.509703 CCATGATCTGTGATCAGGCG 58.490 55.000 14.37 6.53 41.59 5.52
4612 10455 1.142465 ACCCATGATCTGTGATCAGGC 59.858 52.381 14.37 0.00 41.59 4.85
4613 10456 3.572632 AACCCATGATCTGTGATCAGG 57.427 47.619 14.35 13.79 41.59 3.86
4614 10457 4.945543 TGAAAACCCATGATCTGTGATCAG 59.054 41.667 14.35 5.42 42.54 2.90
4615 10458 4.701651 GTGAAAACCCATGATCTGTGATCA 59.298 41.667 11.90 11.90 0.00 2.92
4616 10459 4.096984 GGTGAAAACCCATGATCTGTGATC 59.903 45.833 0.00 0.98 0.00 2.92
4617 10460 4.019174 GGTGAAAACCCATGATCTGTGAT 58.981 43.478 0.00 0.00 0.00 3.06
4618 10461 3.420893 GGTGAAAACCCATGATCTGTGA 58.579 45.455 0.00 0.00 0.00 3.58
4619 10462 3.855689 GGTGAAAACCCATGATCTGTG 57.144 47.619 0.00 0.00 0.00 3.66
4630 10473 4.036852 CAGACTTTCTTCAGGGTGAAAACC 59.963 45.833 0.00 0.00 35.73 3.27
4631 10474 4.881850 TCAGACTTTCTTCAGGGTGAAAAC 59.118 41.667 0.00 0.00 35.73 2.43
4632 10475 4.881850 GTCAGACTTTCTTCAGGGTGAAAA 59.118 41.667 0.00 0.00 35.73 2.29
4633 10476 4.164221 AGTCAGACTTTCTTCAGGGTGAAA 59.836 41.667 0.00 0.00 35.73 2.69
4634 10477 3.711704 AGTCAGACTTTCTTCAGGGTGAA 59.288 43.478 0.00 0.00 34.79 3.18
4635 10478 3.070159 CAGTCAGACTTTCTTCAGGGTGA 59.930 47.826 0.00 0.00 0.00 4.02
4636 10479 3.397482 CAGTCAGACTTTCTTCAGGGTG 58.603 50.000 0.00 0.00 0.00 4.61
4637 10480 3.760580 CAGTCAGACTTTCTTCAGGGT 57.239 47.619 0.00 0.00 0.00 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.