Multiple sequence alignment - TraesCS5A01G065700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G065700 chr5A 100.000 5199 0 0 1 5199 71463707 71458509 0.000000e+00 9601.0
1 TraesCS5A01G065700 chr5A 97.409 193 2 3 3316 3505 29678142 29678334 5.020000e-85 326.0
2 TraesCS5A01G065700 chr5A 96.335 191 5 2 3313 3503 101083265 101083453 3.910000e-81 313.0
3 TraesCS5A01G065700 chr5A 84.561 285 19 6 2833 3103 6768132 6767859 5.160000e-65 259.0
4 TraesCS5A01G065700 chr5B 93.617 1504 61 16 3502 4978 84668330 84666835 0.000000e+00 2213.0
5 TraesCS5A01G065700 chr5B 91.771 875 46 7 887 1755 84714103 84713249 0.000000e+00 1194.0
6 TraesCS5A01G065700 chr5B 93.012 830 35 11 2509 3321 84669491 84668668 0.000000e+00 1190.0
7 TraesCS5A01G065700 chr5B 93.540 774 35 7 1751 2513 84692826 84692057 0.000000e+00 1138.0
8 TraesCS5A01G065700 chr5B 76.891 714 131 23 1214 1900 72631224 72630518 1.770000e-99 374.0
9 TraesCS5A01G065700 chr5B 92.818 181 8 2 5013 5193 84666834 84666659 1.860000e-64 257.0
10 TraesCS5A01G065700 chr5B 94.000 50 3 0 2303 2352 322918769 322918720 5.580000e-10 76.8
11 TraesCS5A01G065700 chr5B 100.000 38 0 0 35 72 529232018 529231981 2.600000e-08 71.3
12 TraesCS5A01G065700 chr2D 92.221 1337 79 10 983 2301 30471170 30469841 0.000000e+00 1869.0
13 TraesCS5A01G065700 chr2D 90.698 989 66 9 3500 4486 30468586 30467622 0.000000e+00 1293.0
14 TraesCS5A01G065700 chr2D 87.577 974 52 18 2348 3321 30469842 30468938 0.000000e+00 1064.0
15 TraesCS5A01G065700 chr2D 79.363 659 117 14 1375 2031 30479235 30479876 3.690000e-121 446.0
16 TraesCS5A01G065700 chr2D 97.727 44 1 0 2303 2346 27072135 27072178 5.580000e-10 76.8
17 TraesCS5A01G065700 chr7B 88.813 1323 99 16 984 2301 681556262 681557540 0.000000e+00 1578.0
18 TraesCS5A01G065700 chr7B 88.653 802 75 11 3798 4587 681577182 681577979 0.000000e+00 963.0
19 TraesCS5A01G065700 chr7B 86.908 802 49 21 2348 3131 681557545 681558308 0.000000e+00 848.0
20 TraesCS5A01G065700 chr7B 88.235 306 34 2 3500 3803 681571804 681572109 1.060000e-96 364.0
21 TraesCS5A01G065700 chr2A 88.314 1198 105 12 3500 4688 32491669 32490498 0.000000e+00 1404.0
22 TraesCS5A01G065700 chr2A 79.418 1341 192 49 990 2284 14749672 14750974 0.000000e+00 870.0
23 TraesCS5A01G065700 chr2A 84.043 658 58 20 2665 3321 32492634 32492023 1.610000e-164 590.0
24 TraesCS5A01G065700 chr2A 76.445 934 168 33 1380 2280 32497547 32498461 4.740000e-125 459.0
25 TraesCS5A01G065700 chr2A 95.865 266 11 0 2036 2301 32493118 32492853 1.030000e-116 431.0
26 TraesCS5A01G065700 chr2A 77.403 801 132 37 1224 1992 49927386 49926603 1.030000e-116 431.0
27 TraesCS5A01G065700 chr5D 94.320 757 18 14 4070 4813 76024884 76024140 0.000000e+00 1136.0
28 TraesCS5A01G065700 chr5D 89.560 728 57 9 70 787 76030370 76029652 0.000000e+00 905.0
29 TraesCS5A01G065700 chr5D 94.845 194 9 1 4882 5075 76023828 76023636 8.460000e-78 302.0
30 TraesCS5A01G065700 chr5D 93.043 115 7 1 5076 5190 76023556 76023443 3.220000e-37 167.0
31 TraesCS5A01G065700 chr5D 98.889 90 1 0 772 861 76029639 76029550 1.500000e-35 161.0
32 TraesCS5A01G065700 chr5D 94.444 90 4 1 4798 4887 76024015 76023927 2.520000e-28 137.0
33 TraesCS5A01G065700 chr5D 97.297 74 2 0 865 938 76025089 76025016 5.470000e-25 126.0
34 TraesCS5A01G065700 chr5D 93.333 45 2 1 28 71 524494105 524494149 1.210000e-06 65.8
35 TraesCS5A01G065700 chr2B 78.984 1142 175 47 1185 2284 23046873 23047991 0.000000e+00 719.0
36 TraesCS5A01G065700 chr2B 76.645 912 168 33 1375 2265 49981180 49980293 3.670000e-126 462.0
37 TraesCS5A01G065700 chr2B 93.023 43 3 0 35 77 785746809 785746851 4.350000e-06 63.9
38 TraesCS5A01G065700 chr6A 97.826 184 4 0 3322 3505 494463098 494463281 8.400000e-83 318.0
39 TraesCS5A01G065700 chr6A 96.685 181 6 0 3325 3505 537876442 537876262 8.460000e-78 302.0
40 TraesCS5A01G065700 chr6A 96.216 185 4 2 3320 3503 45782682 45782864 3.040000e-77 300.0
41 TraesCS5A01G065700 chr6A 100.000 42 0 0 2305 2346 346567087 346567128 1.550000e-10 78.7
42 TraesCS5A01G065700 chr6A 88.235 51 2 4 24 72 116823305 116823353 2.020000e-04 58.4
43 TraesCS5A01G065700 chr4A 96.257 187 6 1 3320 3506 100636544 100636359 6.540000e-79 305.0
44 TraesCS5A01G065700 chr4A 73.277 595 112 34 1224 1778 487916666 487917253 1.920000e-39 174.0
45 TraesCS5A01G065700 chr4A 89.831 59 5 1 2289 2346 666935806 666935748 2.010000e-09 75.0
46 TraesCS5A01G065700 chr1A 96.721 183 6 0 3318 3500 44475866 44476048 6.540000e-79 305.0
47 TraesCS5A01G065700 chr1A 84.407 295 15 8 2831 3094 98574995 98575289 1.440000e-65 261.0
48 TraesCS5A01G065700 chr7A 95.722 187 6 2 3322 3507 509467305 509467120 3.040000e-77 300.0
49 TraesCS5A01G065700 chr3A 93.846 195 10 2 3313 3506 288535835 288535642 5.090000e-75 292.0
50 TraesCS5A01G065700 chr3A 100.000 42 0 0 2305 2346 278690966 278691007 1.550000e-10 78.7
51 TraesCS5A01G065700 chr3A 89.796 49 4 1 36 84 750255556 750255509 1.560000e-05 62.1
52 TraesCS5A01G065700 chr6D 78.492 451 83 7 3686 4124 56214160 56214608 3.060000e-72 283.0
53 TraesCS5A01G065700 chr6D 83.688 141 23 0 1229 1369 380576952 380576812 3.270000e-27 134.0
54 TraesCS5A01G065700 chr6D 97.143 35 1 0 5 39 449814467 449814433 5.620000e-05 60.2
55 TraesCS5A01G065700 chr6B 77.655 452 89 6 3684 4124 126607610 126608060 1.110000e-66 265.0
56 TraesCS5A01G065700 chr6B 91.304 46 3 1 28 72 720503136 720503181 1.560000e-05 62.1
57 TraesCS5A01G065700 chr7D 92.486 173 11 2 2832 3003 90076992 90077163 4.020000e-61 246.0
58 TraesCS5A01G065700 chr7D 95.833 48 2 0 2307 2354 51998809 51998762 1.550000e-10 78.7
59 TraesCS5A01G065700 chrUn 92.442 172 11 2 2833 3003 95567171 95567341 1.450000e-60 244.0
60 TraesCS5A01G065700 chrUn 97.674 43 1 0 2304 2346 176753872 176753914 2.010000e-09 75.0
61 TraesCS5A01G065700 chr4D 83.660 153 25 0 1224 1376 93761211 93761059 1.510000e-30 145.0
62 TraesCS5A01G065700 chr4B 83.007 153 26 0 1224 1376 132294954 132294802 7.020000e-29 139.0
63 TraesCS5A01G065700 chr4B 97.778 45 0 1 2302 2346 74685722 74685765 5.580000e-10 76.8
64 TraesCS5A01G065700 chr3B 97.500 40 1 0 35 74 157235149 157235188 9.340000e-08 69.4
65 TraesCS5A01G065700 chr3B 91.304 46 2 2 37 81 810667427 810667383 1.560000e-05 62.1
66 TraesCS5A01G065700 chr1B 97.222 36 1 0 37 72 15299178 15299143 1.560000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G065700 chr5A 71458509 71463707 5198 True 9601.000000 9601 100.000000 1 5199 1 chr5A.!!$R2 5198
1 TraesCS5A01G065700 chr5B 84666659 84669491 2832 True 1220.000000 2213 93.149000 2509 5193 3 chr5B.!!$R6 2684
2 TraesCS5A01G065700 chr5B 84713249 84714103 854 True 1194.000000 1194 91.771000 887 1755 1 chr5B.!!$R3 868
3 TraesCS5A01G065700 chr5B 84692057 84692826 769 True 1138.000000 1138 93.540000 1751 2513 1 chr5B.!!$R2 762
4 TraesCS5A01G065700 chr5B 72630518 72631224 706 True 374.000000 374 76.891000 1214 1900 1 chr5B.!!$R1 686
5 TraesCS5A01G065700 chr2D 30467622 30471170 3548 True 1408.666667 1869 90.165333 983 4486 3 chr2D.!!$R1 3503
6 TraesCS5A01G065700 chr2D 30479235 30479876 641 False 446.000000 446 79.363000 1375 2031 1 chr2D.!!$F2 656
7 TraesCS5A01G065700 chr7B 681556262 681558308 2046 False 1213.000000 1578 87.860500 984 3131 2 chr7B.!!$F3 2147
8 TraesCS5A01G065700 chr7B 681577182 681577979 797 False 963.000000 963 88.653000 3798 4587 1 chr7B.!!$F2 789
9 TraesCS5A01G065700 chr2A 14749672 14750974 1302 False 870.000000 870 79.418000 990 2284 1 chr2A.!!$F1 1294
10 TraesCS5A01G065700 chr2A 32490498 32493118 2620 True 808.333333 1404 89.407333 2036 4688 3 chr2A.!!$R2 2652
11 TraesCS5A01G065700 chr2A 32497547 32498461 914 False 459.000000 459 76.445000 1380 2280 1 chr2A.!!$F2 900
12 TraesCS5A01G065700 chr2A 49926603 49927386 783 True 431.000000 431 77.403000 1224 1992 1 chr2A.!!$R1 768
13 TraesCS5A01G065700 chr5D 76029550 76030370 820 True 533.000000 905 94.224500 70 861 2 chr5D.!!$R2 791
14 TraesCS5A01G065700 chr5D 76023443 76025089 1646 True 373.600000 1136 94.789800 865 5190 5 chr5D.!!$R1 4325
15 TraesCS5A01G065700 chr2B 23046873 23047991 1118 False 719.000000 719 78.984000 1185 2284 1 chr2B.!!$F1 1099
16 TraesCS5A01G065700 chr2B 49980293 49981180 887 True 462.000000 462 76.645000 1375 2265 1 chr2B.!!$R1 890

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
977 978 0.243636 CGGAAACCCCACAAATCAGC 59.756 55.000 0.0 0.0 34.14 4.26 F
978 979 0.243636 GGAAACCCCACAAATCAGCG 59.756 55.000 0.0 0.0 34.14 5.18 F
979 980 0.243636 GAAACCCCACAAATCAGCGG 59.756 55.000 0.0 0.0 0.00 5.52 F
983 984 0.897863 CCCCACAAATCAGCGGGAAA 60.898 55.000 0.0 0.0 41.62 3.13 F
984 985 0.965439 CCCACAAATCAGCGGGAAAA 59.035 50.000 0.0 0.0 41.62 2.29 F
987 988 0.966179 ACAAATCAGCGGGAAAACCC 59.034 50.000 0.0 0.0 34.99 4.11 F
988 989 1.256812 CAAATCAGCGGGAAAACCCT 58.743 50.000 0.0 0.0 34.99 4.34 F
1121 1122 1.471676 GCTGCTTACCTACATCTGCGT 60.472 52.381 0.0 0.0 0.00 5.24 F
2346 2438 1.553690 ATTGTGGGACGGAGGGAGTG 61.554 60.000 0.0 0.0 0.00 3.51 F
2422 2514 1.697284 TCACAGTCAGTCAGTCAGCT 58.303 50.000 0.0 0.0 0.00 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2142 2223 1.324736 GGATCTTAACGCTTGCGACAG 59.675 52.381 22.03 12.94 0.00 3.51 R
2318 2405 2.035449 TCCGTCCCACAATATAAGAGCG 59.965 50.000 0.00 0.00 0.00 5.03 R
2453 2548 3.066291 TGGCACCTTAACATGTGGTAG 57.934 47.619 0.00 0.00 33.08 3.18 R
2881 3002 4.124910 GCAATAGCGGCTGTAGCA 57.875 55.556 13.86 0.00 44.36 3.49 R
3040 3249 6.851330 GTGAACTAGTGATGCTTGTTTGTAAC 59.149 38.462 0.00 0.00 41.80 2.50 R
3103 3315 5.373262 GCGGTTGCATTTAAGTTTTCATTG 58.627 37.500 0.00 0.00 42.15 2.82 R
3247 3459 2.490903 ACATTCCTGAGCTGATGCAAAC 59.509 45.455 0.00 0.00 42.74 2.93 R
3359 3732 3.008049 ACTTGTGGGAGGTTAGATGTGAC 59.992 47.826 0.00 0.00 0.00 3.67 R
4139 4538 1.534175 CGACTGCTCCGGAGTGAATAC 60.534 57.143 31.43 14.86 0.00 1.89 R
4608 5041 2.369394 CAAGGGGGTGATGTTCTAAGC 58.631 52.381 0.00 0.00 0.00 3.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 3.225272 CACATGTGTGGGCGTTAGA 57.775 52.632 18.03 0.00 42.10 2.10
28 29 0.796312 CACATGTGTGGGCGTTAGAC 59.204 55.000 18.03 0.00 42.10 2.59
29 30 0.685097 ACATGTGTGGGCGTTAGACT 59.315 50.000 0.00 0.00 0.00 3.24
30 31 1.071699 ACATGTGTGGGCGTTAGACTT 59.928 47.619 0.00 0.00 0.00 3.01
31 32 2.151202 CATGTGTGGGCGTTAGACTTT 58.849 47.619 0.00 0.00 0.00 2.66
32 33 2.335316 TGTGTGGGCGTTAGACTTTT 57.665 45.000 0.00 0.00 0.00 2.27
33 34 2.215196 TGTGTGGGCGTTAGACTTTTC 58.785 47.619 0.00 0.00 0.00 2.29
34 35 2.215196 GTGTGGGCGTTAGACTTTTCA 58.785 47.619 0.00 0.00 0.00 2.69
35 36 2.812011 GTGTGGGCGTTAGACTTTTCAT 59.188 45.455 0.00 0.00 0.00 2.57
36 37 3.998341 GTGTGGGCGTTAGACTTTTCATA 59.002 43.478 0.00 0.00 0.00 2.15
37 38 4.453136 GTGTGGGCGTTAGACTTTTCATAA 59.547 41.667 0.00 0.00 0.00 1.90
38 39 5.049267 GTGTGGGCGTTAGACTTTTCATAAA 60.049 40.000 0.00 0.00 0.00 1.40
39 40 5.531659 TGTGGGCGTTAGACTTTTCATAAAA 59.468 36.000 0.00 0.00 0.00 1.52
40 41 6.207810 TGTGGGCGTTAGACTTTTCATAAAAT 59.792 34.615 0.00 0.00 0.00 1.82
41 42 7.088272 GTGGGCGTTAGACTTTTCATAAAATT 58.912 34.615 0.00 0.00 0.00 1.82
42 43 8.238631 GTGGGCGTTAGACTTTTCATAAAATTA 58.761 33.333 0.00 0.00 0.00 1.40
43 44 8.794553 TGGGCGTTAGACTTTTCATAAAATTAA 58.205 29.630 0.00 0.00 0.00 1.40
44 45 9.285770 GGGCGTTAGACTTTTCATAAAATTAAG 57.714 33.333 0.00 0.00 0.00 1.85
45 46 9.836076 GGCGTTAGACTTTTCATAAAATTAAGT 57.164 29.630 0.00 0.00 0.00 2.24
65 66 9.765795 ATTAAGTCATCTATTTTAGAACGGAGG 57.234 33.333 0.00 0.00 38.50 4.30
66 67 6.163135 AGTCATCTATTTTAGAACGGAGGG 57.837 41.667 0.00 0.00 38.50 4.30
67 68 5.897824 AGTCATCTATTTTAGAACGGAGGGA 59.102 40.000 0.00 0.00 38.50 4.20
68 69 6.041069 AGTCATCTATTTTAGAACGGAGGGAG 59.959 42.308 0.00 0.00 38.50 4.30
77 78 0.338814 AACGGAGGGAGTAGGACCAT 59.661 55.000 0.00 0.00 0.00 3.55
94 95 3.105283 ACCATAGTTAGAGTGTGACCCC 58.895 50.000 0.00 0.00 0.00 4.95
95 96 2.434702 CCATAGTTAGAGTGTGACCCCC 59.565 54.545 0.00 0.00 0.00 5.40
96 97 3.104512 CATAGTTAGAGTGTGACCCCCA 58.895 50.000 0.00 0.00 0.00 4.96
97 98 1.349067 AGTTAGAGTGTGACCCCCAC 58.651 55.000 0.00 0.00 45.88 4.61
98 99 0.323957 GTTAGAGTGTGACCCCCACC 59.676 60.000 0.00 0.00 45.09 4.61
99 100 0.838987 TTAGAGTGTGACCCCCACCC 60.839 60.000 0.00 0.00 45.09 4.61
100 101 2.758852 TAGAGTGTGACCCCCACCCC 62.759 65.000 0.00 0.00 45.09 4.95
142 143 4.083271 GGTTAGAAAGACACAATGCCACTC 60.083 45.833 0.00 0.00 0.00 3.51
143 144 3.498774 AGAAAGACACAATGCCACTCT 57.501 42.857 0.00 0.00 0.00 3.24
144 145 3.406764 AGAAAGACACAATGCCACTCTC 58.593 45.455 0.00 0.00 0.00 3.20
145 146 2.936919 AAGACACAATGCCACTCTCA 57.063 45.000 0.00 0.00 0.00 3.27
146 147 2.936919 AGACACAATGCCACTCTCAA 57.063 45.000 0.00 0.00 0.00 3.02
147 148 3.213206 AGACACAATGCCACTCTCAAA 57.787 42.857 0.00 0.00 0.00 2.69
148 149 3.554934 AGACACAATGCCACTCTCAAAA 58.445 40.909 0.00 0.00 0.00 2.44
149 150 3.953612 AGACACAATGCCACTCTCAAAAA 59.046 39.130 0.00 0.00 0.00 1.94
150 151 4.586001 AGACACAATGCCACTCTCAAAAAT 59.414 37.500 0.00 0.00 0.00 1.82
151 152 4.624015 ACACAATGCCACTCTCAAAAATG 58.376 39.130 0.00 0.00 0.00 2.32
152 153 3.991773 CACAATGCCACTCTCAAAAATGG 59.008 43.478 0.00 0.00 35.17 3.16
153 154 3.642848 ACAATGCCACTCTCAAAAATGGT 59.357 39.130 0.00 0.00 34.50 3.55
154 155 3.947910 ATGCCACTCTCAAAAATGGTG 57.052 42.857 0.00 0.00 34.50 4.17
156 157 1.273327 GCCACTCTCAAAAATGGTGGG 59.727 52.381 11.56 0.00 45.15 4.61
157 158 1.273327 CCACTCTCAAAAATGGTGGGC 59.727 52.381 0.00 0.00 42.39 5.36
158 159 1.068333 CACTCTCAAAAATGGTGGGCG 60.068 52.381 0.00 0.00 0.00 6.13
159 160 1.247567 CTCTCAAAAATGGTGGGCGT 58.752 50.000 0.00 0.00 0.00 5.68
160 161 1.613437 CTCTCAAAAATGGTGGGCGTT 59.387 47.619 0.00 0.00 0.00 4.84
161 162 2.817258 CTCTCAAAAATGGTGGGCGTTA 59.183 45.455 0.00 0.00 0.00 3.18
162 163 3.426615 TCTCAAAAATGGTGGGCGTTAT 58.573 40.909 0.00 0.00 0.00 1.89
163 164 3.829601 TCTCAAAAATGGTGGGCGTTATT 59.170 39.130 0.00 0.00 0.00 1.40
164 165 4.282195 TCTCAAAAATGGTGGGCGTTATTT 59.718 37.500 0.00 0.00 0.00 1.40
165 166 4.962155 TCAAAAATGGTGGGCGTTATTTT 58.038 34.783 0.00 0.00 35.05 1.82
166 167 5.368989 TCAAAAATGGTGGGCGTTATTTTT 58.631 33.333 0.00 0.00 41.04 1.94
167 168 6.522054 TCAAAAATGGTGGGCGTTATTTTTA 58.478 32.000 0.00 0.00 39.40 1.52
168 169 6.990349 TCAAAAATGGTGGGCGTTATTTTTAA 59.010 30.769 0.00 0.00 39.40 1.52
169 170 7.497909 TCAAAAATGGTGGGCGTTATTTTTAAA 59.502 29.630 0.00 0.00 39.40 1.52
170 171 7.428282 AAAATGGTGGGCGTTATTTTTAAAG 57.572 32.000 0.00 0.00 30.86 1.85
171 172 4.522722 TGGTGGGCGTTATTTTTAAAGG 57.477 40.909 0.00 0.00 0.00 3.11
172 173 4.150359 TGGTGGGCGTTATTTTTAAAGGA 58.850 39.130 0.00 0.00 0.00 3.36
173 174 4.587684 TGGTGGGCGTTATTTTTAAAGGAA 59.412 37.500 0.00 0.00 0.00 3.36
174 175 5.070047 TGGTGGGCGTTATTTTTAAAGGAAA 59.930 36.000 0.00 0.00 0.00 3.13
175 176 6.167685 GGTGGGCGTTATTTTTAAAGGAAAT 58.832 36.000 0.00 0.00 0.00 2.17
176 177 6.091577 GGTGGGCGTTATTTTTAAAGGAAATG 59.908 38.462 0.00 0.00 0.00 2.32
177 178 6.869388 GTGGGCGTTATTTTTAAAGGAAATGA 59.131 34.615 0.00 0.00 0.00 2.57
178 179 7.385478 GTGGGCGTTATTTTTAAAGGAAATGAA 59.615 33.333 0.00 0.00 0.00 2.57
179 180 7.931948 TGGGCGTTATTTTTAAAGGAAATGAAA 59.068 29.630 0.00 0.00 0.00 2.69
180 181 8.941977 GGGCGTTATTTTTAAAGGAAATGAAAT 58.058 29.630 0.00 0.00 0.00 2.17
246 247 7.421087 AAGAACTTTCAGTAGTCCTATACCC 57.579 40.000 0.00 0.00 0.00 3.69
247 248 5.898397 AGAACTTTCAGTAGTCCTATACCCC 59.102 44.000 0.00 0.00 0.00 4.95
248 249 5.484734 ACTTTCAGTAGTCCTATACCCCT 57.515 43.478 0.00 0.00 0.00 4.79
249 250 5.851418 ACTTTCAGTAGTCCTATACCCCTT 58.149 41.667 0.00 0.00 0.00 3.95
250 251 6.989894 ACTTTCAGTAGTCCTATACCCCTTA 58.010 40.000 0.00 0.00 0.00 2.69
251 252 7.068061 ACTTTCAGTAGTCCTATACCCCTTAG 58.932 42.308 0.00 0.00 0.00 2.18
252 253 6.853669 TTCAGTAGTCCTATACCCCTTAGA 57.146 41.667 0.00 0.00 0.00 2.10
253 254 7.417811 TTCAGTAGTCCTATACCCCTTAGAT 57.582 40.000 0.00 0.00 0.00 1.98
254 255 8.529952 TTCAGTAGTCCTATACCCCTTAGATA 57.470 38.462 0.00 0.00 0.00 1.98
255 256 8.712168 TCAGTAGTCCTATACCCCTTAGATAT 57.288 38.462 0.00 0.00 0.00 1.63
256 257 9.136828 TCAGTAGTCCTATACCCCTTAGATATT 57.863 37.037 0.00 0.00 0.00 1.28
261 262 7.833183 AGTCCTATACCCCTTAGATATTACACG 59.167 40.741 0.00 0.00 0.00 4.49
262 263 7.831193 GTCCTATACCCCTTAGATATTACACGA 59.169 40.741 0.00 0.00 0.00 4.35
263 264 8.393259 TCCTATACCCCTTAGATATTACACGAA 58.607 37.037 0.00 0.00 0.00 3.85
264 265 8.684520 CCTATACCCCTTAGATATTACACGAAG 58.315 40.741 0.00 0.00 0.00 3.79
265 266 9.458727 CTATACCCCTTAGATATTACACGAAGA 57.541 37.037 0.00 0.00 0.00 2.87
266 267 8.896722 ATACCCCTTAGATATTACACGAAGAT 57.103 34.615 0.00 0.00 0.00 2.40
267 268 7.229581 ACCCCTTAGATATTACACGAAGATC 57.770 40.000 0.00 0.00 36.23 2.75
268 269 6.210984 ACCCCTTAGATATTACACGAAGATCC 59.789 42.308 0.00 0.00 36.58 3.36
269 270 6.210784 CCCCTTAGATATTACACGAAGATCCA 59.789 42.308 0.00 0.00 36.58 3.41
270 271 7.093289 CCCCTTAGATATTACACGAAGATCCAT 60.093 40.741 0.00 0.00 36.58 3.41
271 272 7.761704 CCCTTAGATATTACACGAAGATCCATG 59.238 40.741 0.00 0.00 36.58 3.66
272 273 7.276658 CCTTAGATATTACACGAAGATCCATGC 59.723 40.741 0.00 0.00 36.58 4.06
273 274 6.101650 AGATATTACACGAAGATCCATGCA 57.898 37.500 0.00 0.00 36.58 3.96
274 275 6.162079 AGATATTACACGAAGATCCATGCAG 58.838 40.000 0.00 0.00 36.58 4.41
275 276 3.885724 TTACACGAAGATCCATGCAGA 57.114 42.857 0.00 0.00 0.00 4.26
276 277 2.996249 ACACGAAGATCCATGCAGAT 57.004 45.000 0.00 0.00 0.00 2.90
277 278 3.272574 ACACGAAGATCCATGCAGATT 57.727 42.857 0.00 0.00 0.00 2.40
278 279 3.614092 ACACGAAGATCCATGCAGATTT 58.386 40.909 0.00 0.00 0.00 2.17
279 280 4.012374 ACACGAAGATCCATGCAGATTTT 58.988 39.130 0.00 0.00 0.00 1.82
280 281 5.185454 ACACGAAGATCCATGCAGATTTTA 58.815 37.500 0.00 0.00 0.00 1.52
281 282 5.647658 ACACGAAGATCCATGCAGATTTTAA 59.352 36.000 0.00 0.00 0.00 1.52
282 283 6.150976 ACACGAAGATCCATGCAGATTTTAAA 59.849 34.615 0.00 0.00 0.00 1.52
283 284 7.148018 ACACGAAGATCCATGCAGATTTTAAAT 60.148 33.333 0.00 0.00 0.00 1.40
284 285 8.344831 CACGAAGATCCATGCAGATTTTAAATA 58.655 33.333 0.00 0.00 0.00 1.40
285 286 8.902806 ACGAAGATCCATGCAGATTTTAAATAA 58.097 29.630 0.00 0.00 0.00 1.40
286 287 9.734620 CGAAGATCCATGCAGATTTTAAATAAA 57.265 29.630 0.00 0.00 0.00 1.40
293 294 9.212687 CCATGCAGATTTTAAATAAATTTTGCG 57.787 29.630 0.00 5.69 38.44 4.85
294 295 8.726836 CATGCAGATTTTAAATAAATTTTGCGC 58.273 29.630 0.00 0.00 38.44 6.09
295 296 6.952635 TGCAGATTTTAAATAAATTTTGCGCG 59.047 30.769 0.00 0.00 38.44 6.86
296 297 6.407753 GCAGATTTTAAATAAATTTTGCGCGG 59.592 34.615 8.83 0.00 31.67 6.46
297 298 7.670916 CAGATTTTAAATAAATTTTGCGCGGA 58.329 30.769 8.83 0.00 0.00 5.54
298 299 8.327429 CAGATTTTAAATAAATTTTGCGCGGAT 58.673 29.630 8.83 0.00 0.00 4.18
299 300 8.539674 AGATTTTAAATAAATTTTGCGCGGATC 58.460 29.630 8.83 0.00 0.00 3.36
300 301 7.820044 TTTTAAATAAATTTTGCGCGGATCT 57.180 28.000 8.83 0.00 0.00 2.75
301 302 7.444558 TTTAAATAAATTTTGCGCGGATCTC 57.555 32.000 8.83 0.00 0.00 2.75
302 303 3.626028 ATAAATTTTGCGCGGATCTCC 57.374 42.857 8.83 0.00 0.00 3.71
317 318 4.945246 GGATCTCCGCATAAAGTTAGACA 58.055 43.478 0.00 0.00 0.00 3.41
318 319 4.985409 GGATCTCCGCATAAAGTTAGACAG 59.015 45.833 0.00 0.00 0.00 3.51
319 320 5.221263 GGATCTCCGCATAAAGTTAGACAGA 60.221 44.000 0.00 0.00 0.00 3.41
320 321 5.854010 TCTCCGCATAAAGTTAGACAGAT 57.146 39.130 0.00 0.00 0.00 2.90
321 322 6.222038 TCTCCGCATAAAGTTAGACAGATT 57.778 37.500 0.00 0.00 0.00 2.40
322 323 6.640518 TCTCCGCATAAAGTTAGACAGATTT 58.359 36.000 0.00 0.00 0.00 2.17
323 324 7.103641 TCTCCGCATAAAGTTAGACAGATTTT 58.896 34.615 0.00 0.00 0.00 1.82
324 325 7.064609 TCTCCGCATAAAGTTAGACAGATTTTG 59.935 37.037 0.00 0.00 0.00 2.44
325 326 5.739161 CCGCATAAAGTTAGACAGATTTTGC 59.261 40.000 0.00 0.00 0.00 3.68
326 327 6.314018 CGCATAAAGTTAGACAGATTTTGCA 58.686 36.000 0.00 0.00 0.00 4.08
327 328 6.968904 CGCATAAAGTTAGACAGATTTTGCAT 59.031 34.615 0.00 0.00 0.00 3.96
328 329 7.485913 CGCATAAAGTTAGACAGATTTTGCATT 59.514 33.333 0.00 0.00 0.00 3.56
329 330 8.589629 GCATAAAGTTAGACAGATTTTGCATTG 58.410 33.333 0.00 0.00 0.00 2.82
330 331 9.844790 CATAAAGTTAGACAGATTTTGCATTGA 57.155 29.630 0.00 0.00 0.00 2.57
331 332 9.846248 ATAAAGTTAGACAGATTTTGCATTGAC 57.154 29.630 0.00 0.00 0.00 3.18
332 333 7.516198 AAGTTAGACAGATTTTGCATTGACT 57.484 32.000 0.00 0.00 0.00 3.41
333 334 7.516198 AGTTAGACAGATTTTGCATTGACTT 57.484 32.000 0.00 0.00 0.00 3.01
334 335 8.621532 AGTTAGACAGATTTTGCATTGACTTA 57.378 30.769 0.00 0.00 0.00 2.24
335 336 9.066892 AGTTAGACAGATTTTGCATTGACTTAA 57.933 29.630 0.00 0.00 0.00 1.85
336 337 9.334693 GTTAGACAGATTTTGCATTGACTTAAG 57.665 33.333 0.00 0.00 0.00 1.85
337 338 7.516198 AGACAGATTTTGCATTGACTTAAGT 57.484 32.000 8.13 8.13 0.00 2.24
338 339 7.945134 AGACAGATTTTGCATTGACTTAAGTT 58.055 30.769 10.02 0.00 0.00 2.66
339 340 7.864379 AGACAGATTTTGCATTGACTTAAGTTG 59.136 33.333 10.02 5.49 0.00 3.16
340 341 7.715657 ACAGATTTTGCATTGACTTAAGTTGA 58.284 30.769 10.02 1.92 0.00 3.18
341 342 7.649306 ACAGATTTTGCATTGACTTAAGTTGAC 59.351 33.333 10.02 0.00 0.00 3.18
342 343 7.864379 CAGATTTTGCATTGACTTAAGTTGACT 59.136 33.333 10.02 0.00 0.00 3.41
343 344 9.066892 AGATTTTGCATTGACTTAAGTTGACTA 57.933 29.630 10.02 0.00 0.00 2.59
344 345 9.677567 GATTTTGCATTGACTTAAGTTGACTAA 57.322 29.630 10.02 1.71 0.00 2.24
345 346 9.683069 ATTTTGCATTGACTTAAGTTGACTAAG 57.317 29.630 10.02 0.00 0.00 2.18
346 347 8.445275 TTTGCATTGACTTAAGTTGACTAAGA 57.555 30.769 10.02 0.00 0.00 2.10
347 348 8.621532 TTGCATTGACTTAAGTTGACTAAGAT 57.378 30.769 10.02 0.00 0.00 2.40
348 349 8.621532 TGCATTGACTTAAGTTGACTAAGATT 57.378 30.769 10.02 0.00 0.00 2.40
349 350 9.066892 TGCATTGACTTAAGTTGACTAAGATTT 57.933 29.630 10.02 0.00 0.00 2.17
353 354 9.772973 TTGACTTAAGTTGACTAAGATTTAGCA 57.227 29.630 10.02 0.00 0.00 3.49
354 355 9.772973 TGACTTAAGTTGACTAAGATTTAGCAA 57.227 29.630 10.02 0.40 0.00 3.91
376 377 8.742777 AGCAAAATCAAAATGATACTTAGCTCA 58.257 29.630 0.00 0.00 35.76 4.26
377 378 9.357652 GCAAAATCAAAATGATACTTAGCTCAA 57.642 29.630 0.00 0.00 35.76 3.02
394 395 6.944234 AGCTCAAGTAGTGCTAAAAAGTTT 57.056 33.333 0.00 0.00 44.69 2.66
395 396 6.960468 AGCTCAAGTAGTGCTAAAAAGTTTC 58.040 36.000 0.00 0.00 44.69 2.78
396 397 6.542370 AGCTCAAGTAGTGCTAAAAAGTTTCA 59.458 34.615 0.00 0.00 44.69 2.69
397 398 7.067008 AGCTCAAGTAGTGCTAAAAAGTTTCAA 59.933 33.333 0.00 0.00 44.69 2.69
398 399 7.700656 GCTCAAGTAGTGCTAAAAAGTTTCAAA 59.299 33.333 0.00 0.00 34.02 2.69
399 400 9.736023 CTCAAGTAGTGCTAAAAAGTTTCAAAT 57.264 29.630 0.00 0.00 0.00 2.32
400 401 9.730420 TCAAGTAGTGCTAAAAAGTTTCAAATC 57.270 29.630 0.00 0.00 0.00 2.17
401 402 9.515020 CAAGTAGTGCTAAAAAGTTTCAAATCA 57.485 29.630 0.00 0.00 0.00 2.57
455 456 1.609208 AAAAAGATGCTGGCGTCACT 58.391 45.000 15.79 1.43 34.59 3.41
456 457 0.877071 AAAAGATGCTGGCGTCACTG 59.123 50.000 15.79 0.00 34.59 3.66
457 458 0.957395 AAAGATGCTGGCGTCACTGG 60.957 55.000 15.79 0.00 34.59 4.00
458 459 1.830587 AAGATGCTGGCGTCACTGGA 61.831 55.000 15.79 0.00 34.59 3.86
459 460 2.046892 ATGCTGGCGTCACTGGAC 60.047 61.111 0.00 0.00 40.77 4.02
460 461 2.513026 GATGCTGGCGTCACTGGACT 62.513 60.000 9.59 0.00 42.05 3.85
461 462 2.031163 GCTGGCGTCACTGGACTT 59.969 61.111 0.00 0.00 42.05 3.01
462 463 1.292223 GCTGGCGTCACTGGACTTA 59.708 57.895 0.00 0.00 42.05 2.24
463 464 0.737715 GCTGGCGTCACTGGACTTAG 60.738 60.000 0.00 0.00 42.05 2.18
464 465 0.888619 CTGGCGTCACTGGACTTAGA 59.111 55.000 0.00 0.00 42.05 2.10
465 466 0.601558 TGGCGTCACTGGACTTAGAC 59.398 55.000 0.00 0.00 42.05 2.59
466 467 0.889306 GGCGTCACTGGACTTAGACT 59.111 55.000 0.00 0.00 42.05 3.24
467 468 1.135344 GGCGTCACTGGACTTAGACTC 60.135 57.143 0.00 0.00 42.05 3.36
468 469 1.540267 GCGTCACTGGACTTAGACTCA 59.460 52.381 0.00 0.00 42.05 3.41
469 470 2.030185 GCGTCACTGGACTTAGACTCAA 60.030 50.000 0.00 0.00 42.05 3.02
470 471 3.566523 CGTCACTGGACTTAGACTCAAC 58.433 50.000 0.00 0.00 42.05 3.18
471 472 3.253677 CGTCACTGGACTTAGACTCAACT 59.746 47.826 0.00 0.00 42.05 3.16
472 473 4.454847 CGTCACTGGACTTAGACTCAACTA 59.545 45.833 0.00 0.00 42.05 2.24
473 474 5.048921 CGTCACTGGACTTAGACTCAACTAA 60.049 44.000 0.00 0.00 42.05 2.24
486 487 6.484818 GACTCAACTAAGTCTAAGTCGACT 57.515 41.667 13.58 13.58 45.73 4.18
487 488 6.243811 ACTCAACTAAGTCTAAGTCGACTG 57.756 41.667 20.85 7.79 43.14 3.51
488 489 5.996513 ACTCAACTAAGTCTAAGTCGACTGA 59.003 40.000 20.85 11.31 43.14 3.41
489 490 6.148150 ACTCAACTAAGTCTAAGTCGACTGAG 59.852 42.308 22.32 22.32 44.71 3.35
490 491 6.228995 TCAACTAAGTCTAAGTCGACTGAGA 58.771 40.000 26.12 26.12 42.73 3.27
491 492 6.879993 TCAACTAAGTCTAAGTCGACTGAGAT 59.120 38.462 30.95 20.39 42.73 2.75
492 493 6.913873 ACTAAGTCTAAGTCGACTGAGATC 57.086 41.667 30.95 23.58 42.73 2.75
493 494 6.646267 ACTAAGTCTAAGTCGACTGAGATCT 58.354 40.000 30.95 25.04 42.73 2.75
494 495 7.784037 ACTAAGTCTAAGTCGACTGAGATCTA 58.216 38.462 30.95 22.96 42.73 1.98
495 496 7.924412 ACTAAGTCTAAGTCGACTGAGATCTAG 59.076 40.741 30.95 29.83 42.73 2.43
496 497 5.607477 AGTCTAAGTCGACTGAGATCTAGG 58.393 45.833 30.95 6.35 42.39 3.02
497 498 4.212636 GTCTAAGTCGACTGAGATCTAGGC 59.787 50.000 30.95 19.38 35.96 3.93
498 499 1.975660 AGTCGACTGAGATCTAGGCC 58.024 55.000 19.30 0.00 0.00 5.19
499 500 1.493022 AGTCGACTGAGATCTAGGCCT 59.507 52.381 19.30 11.78 0.00 5.19
500 501 1.606668 GTCGACTGAGATCTAGGCCTG 59.393 57.143 17.99 5.60 0.00 4.85
501 502 1.490910 TCGACTGAGATCTAGGCCTGA 59.509 52.381 17.99 11.61 0.00 3.86
502 503 1.879380 CGACTGAGATCTAGGCCTGAG 59.121 57.143 17.99 9.21 0.00 3.35
503 504 2.748132 CGACTGAGATCTAGGCCTGAGT 60.748 54.545 17.99 5.43 29.71 3.41
504 505 3.295973 GACTGAGATCTAGGCCTGAGTT 58.704 50.000 17.99 4.05 27.25 3.01
505 506 3.295973 ACTGAGATCTAGGCCTGAGTTC 58.704 50.000 17.99 12.78 0.00 3.01
506 507 3.295093 CTGAGATCTAGGCCTGAGTTCA 58.705 50.000 17.99 15.68 0.00 3.18
507 508 3.703556 CTGAGATCTAGGCCTGAGTTCAA 59.296 47.826 17.99 5.76 0.00 2.69
508 509 3.703556 TGAGATCTAGGCCTGAGTTCAAG 59.296 47.826 17.99 2.12 0.00 3.02
509 510 3.704061 GAGATCTAGGCCTGAGTTCAAGT 59.296 47.826 17.99 0.00 0.00 3.16
510 511 3.450457 AGATCTAGGCCTGAGTTCAAGTG 59.550 47.826 17.99 0.00 0.00 3.16
511 512 2.609747 TCTAGGCCTGAGTTCAAGTGT 58.390 47.619 17.99 0.00 0.00 3.55
512 513 3.774734 TCTAGGCCTGAGTTCAAGTGTA 58.225 45.455 17.99 0.00 0.00 2.90
513 514 4.157246 TCTAGGCCTGAGTTCAAGTGTAA 58.843 43.478 17.99 0.00 0.00 2.41
514 515 4.777896 TCTAGGCCTGAGTTCAAGTGTAAT 59.222 41.667 17.99 0.00 0.00 1.89
515 516 3.944087 AGGCCTGAGTTCAAGTGTAATC 58.056 45.455 3.11 0.00 0.00 1.75
516 517 3.010420 GGCCTGAGTTCAAGTGTAATCC 58.990 50.000 0.00 0.00 0.00 3.01
517 518 3.559171 GGCCTGAGTTCAAGTGTAATCCA 60.559 47.826 0.00 0.00 0.00 3.41
518 519 3.437049 GCCTGAGTTCAAGTGTAATCCAC 59.563 47.826 0.00 0.00 44.89 4.02
555 556 9.970395 TTAATGTAGGTTAGAATATACGGTGTG 57.030 33.333 0.00 0.00 0.00 3.82
556 557 7.828508 ATGTAGGTTAGAATATACGGTGTGA 57.171 36.000 0.00 0.00 0.00 3.58
557 558 7.828508 TGTAGGTTAGAATATACGGTGTGAT 57.171 36.000 0.00 0.00 0.00 3.06
558 559 8.241497 TGTAGGTTAGAATATACGGTGTGATT 57.759 34.615 0.00 0.00 0.00 2.57
559 560 8.698210 TGTAGGTTAGAATATACGGTGTGATTT 58.302 33.333 0.00 0.00 0.00 2.17
560 561 8.975439 GTAGGTTAGAATATACGGTGTGATTTG 58.025 37.037 0.00 0.00 0.00 2.32
561 562 6.482308 AGGTTAGAATATACGGTGTGATTTGC 59.518 38.462 0.00 0.00 0.00 3.68
562 563 6.259167 GGTTAGAATATACGGTGTGATTTGCA 59.741 38.462 0.00 0.00 0.00 4.08
563 564 7.201661 GGTTAGAATATACGGTGTGATTTGCAA 60.202 37.037 0.00 0.00 0.00 4.08
564 565 6.751514 AGAATATACGGTGTGATTTGCAAA 57.248 33.333 15.44 15.44 0.00 3.68
565 566 6.551736 AGAATATACGGTGTGATTTGCAAAC 58.448 36.000 15.41 9.24 33.73 2.93
566 567 6.374333 AGAATATACGGTGTGATTTGCAAACT 59.626 34.615 15.41 3.86 34.96 2.66
567 568 7.551262 AGAATATACGGTGTGATTTGCAAACTA 59.449 33.333 15.41 3.37 34.96 2.24
568 569 3.896648 ACGGTGTGATTTGCAAACTAG 57.103 42.857 15.41 4.73 34.96 2.57
569 570 3.472652 ACGGTGTGATTTGCAAACTAGA 58.527 40.909 15.41 1.98 34.96 2.43
570 571 3.880490 ACGGTGTGATTTGCAAACTAGAA 59.120 39.130 15.41 0.00 34.96 2.10
571 572 4.336993 ACGGTGTGATTTGCAAACTAGAAA 59.663 37.500 15.41 0.00 34.96 2.52
572 573 5.009610 ACGGTGTGATTTGCAAACTAGAAAT 59.990 36.000 15.41 0.00 34.96 2.17
573 574 5.920273 CGGTGTGATTTGCAAACTAGAAATT 59.080 36.000 15.41 0.00 34.96 1.82
574 575 7.081349 CGGTGTGATTTGCAAACTAGAAATTA 58.919 34.615 15.41 0.00 34.96 1.40
575 576 7.271223 CGGTGTGATTTGCAAACTAGAAATTAG 59.729 37.037 15.41 0.00 34.96 1.73
576 577 7.542130 GGTGTGATTTGCAAACTAGAAATTAGG 59.458 37.037 15.41 0.00 34.96 2.69
577 578 7.062255 GTGTGATTTGCAAACTAGAAATTAGGC 59.938 37.037 15.41 0.00 31.66 3.93
578 579 7.090173 GTGATTTGCAAACTAGAAATTAGGCA 58.910 34.615 15.41 0.00 0.00 4.75
579 580 7.761249 GTGATTTGCAAACTAGAAATTAGGCAT 59.239 33.333 15.41 0.00 0.00 4.40
580 581 8.313292 TGATTTGCAAACTAGAAATTAGGCATT 58.687 29.630 15.41 0.00 0.00 3.56
581 582 9.154847 GATTTGCAAACTAGAAATTAGGCATTT 57.845 29.630 15.41 0.00 37.84 2.32
582 583 8.900983 TTTGCAAACTAGAAATTAGGCATTTT 57.099 26.923 8.05 0.00 35.02 1.82
583 584 8.900983 TTGCAAACTAGAAATTAGGCATTTTT 57.099 26.923 0.00 0.00 35.02 1.94
610 611 9.965824 TTAGAGGACAGAAAATTCAAATGAAAC 57.034 29.630 0.00 0.00 37.61 2.78
611 612 8.242729 AGAGGACAGAAAATTCAAATGAAACT 57.757 30.769 0.00 0.00 37.61 2.66
612 613 9.354673 AGAGGACAGAAAATTCAAATGAAACTA 57.645 29.630 0.00 0.00 37.61 2.24
661 662 9.720769 TTTCATTTAGCAGCTTTTAGTAGTACT 57.279 29.630 8.14 8.14 0.00 2.73
663 664 9.798994 TCATTTAGCAGCTTTTAGTAGTACTAC 57.201 33.333 23.03 23.03 36.35 2.73
664 665 9.582431 CATTTAGCAGCTTTTAGTAGTACTACA 57.418 33.333 29.87 15.95 38.48 2.74
693 694 7.187244 GATGAAATCTACATGGATCTGTGTG 57.813 40.000 11.97 1.13 41.17 3.82
694 695 6.053632 TGAAATCTACATGGATCTGTGTGT 57.946 37.500 11.97 6.10 0.00 3.72
695 696 7.181569 TGAAATCTACATGGATCTGTGTGTA 57.818 36.000 11.97 6.76 0.00 2.90
696 697 7.619965 TGAAATCTACATGGATCTGTGTGTAA 58.380 34.615 11.97 1.21 0.00 2.41
697 698 8.100164 TGAAATCTACATGGATCTGTGTGTAAA 58.900 33.333 11.97 0.00 0.00 2.01
698 699 7.849804 AATCTACATGGATCTGTGTGTAAAC 57.150 36.000 11.97 0.00 0.00 2.01
699 700 6.605471 TCTACATGGATCTGTGTGTAAACT 57.395 37.500 11.97 0.00 0.00 2.66
700 701 6.631016 TCTACATGGATCTGTGTGTAAACTC 58.369 40.000 11.97 0.00 0.00 3.01
701 702 5.489792 ACATGGATCTGTGTGTAAACTCT 57.510 39.130 0.00 0.00 0.00 3.24
702 703 5.240891 ACATGGATCTGTGTGTAAACTCTG 58.759 41.667 0.00 0.00 0.00 3.35
703 704 4.955811 TGGATCTGTGTGTAAACTCTGT 57.044 40.909 0.00 0.00 0.00 3.41
704 705 4.883083 TGGATCTGTGTGTAAACTCTGTC 58.117 43.478 0.00 0.00 0.00 3.51
705 706 4.588951 TGGATCTGTGTGTAAACTCTGTCT 59.411 41.667 0.00 0.00 0.00 3.41
706 707 5.070446 TGGATCTGTGTGTAAACTCTGTCTT 59.930 40.000 0.00 0.00 0.00 3.01
707 708 5.992217 GGATCTGTGTGTAAACTCTGTCTTT 59.008 40.000 0.00 0.00 0.00 2.52
708 709 6.483640 GGATCTGTGTGTAAACTCTGTCTTTT 59.516 38.462 0.00 0.00 0.00 2.27
709 710 7.012421 GGATCTGTGTGTAAACTCTGTCTTTTT 59.988 37.037 0.00 0.00 0.00 1.94
757 758 8.934023 AAGTACACAATCCTAATTCTTTTGGA 57.066 30.769 0.00 0.00 40.34 3.53
758 759 9.533831 AAGTACACAATCCTAATTCTTTTGGAT 57.466 29.630 0.00 0.00 45.63 3.41
800 801 8.819643 AGAGAGTTGAACAGAACAAATACTAC 57.180 34.615 0.00 0.00 0.00 2.73
801 802 8.643324 AGAGAGTTGAACAGAACAAATACTACT 58.357 33.333 0.00 0.00 0.00 2.57
802 803 9.909644 GAGAGTTGAACAGAACAAATACTACTA 57.090 33.333 0.00 0.00 0.00 1.82
833 834 9.871175 TTTTAGGGGAGAAAACAAATACTAAGT 57.129 29.630 0.00 0.00 0.00 2.24
834 835 9.871175 TTTAGGGGAGAAAACAAATACTAAGTT 57.129 29.630 0.00 0.00 0.00 2.66
835 836 9.871175 TTAGGGGAGAAAACAAATACTAAGTTT 57.129 29.630 0.00 0.00 37.08 2.66
836 837 8.777578 AGGGGAGAAAACAAATACTAAGTTTT 57.222 30.769 0.00 0.00 45.16 2.43
837 838 9.209048 AGGGGAGAAAACAAATACTAAGTTTTT 57.791 29.630 0.00 0.00 43.26 1.94
945 946 4.121317 CCTAGTCTCCACTACACTAGTCG 58.879 52.174 0.00 0.00 38.56 4.18
950 951 0.248134 CCACTACACTAGTCGCTCGC 60.248 60.000 0.00 0.00 36.76 5.03
968 969 3.702048 CTCCGCTCGGAAACCCCA 61.702 66.667 12.42 0.00 44.66 4.96
977 978 0.243636 CGGAAACCCCACAAATCAGC 59.756 55.000 0.00 0.00 34.14 4.26
978 979 0.243636 GGAAACCCCACAAATCAGCG 59.756 55.000 0.00 0.00 34.14 5.18
979 980 0.243636 GAAACCCCACAAATCAGCGG 59.756 55.000 0.00 0.00 0.00 5.52
980 981 1.184970 AAACCCCACAAATCAGCGGG 61.185 55.000 0.00 0.00 39.85 6.13
981 982 2.075355 AACCCCACAAATCAGCGGGA 62.075 55.000 0.00 0.00 41.62 5.14
982 983 1.304052 CCCCACAAATCAGCGGGAA 60.304 57.895 0.00 0.00 41.62 3.97
983 984 0.897863 CCCCACAAATCAGCGGGAAA 60.898 55.000 0.00 0.00 41.62 3.13
984 985 0.965439 CCCACAAATCAGCGGGAAAA 59.035 50.000 0.00 0.00 41.62 2.29
985 986 1.336795 CCCACAAATCAGCGGGAAAAC 60.337 52.381 0.00 0.00 41.62 2.43
986 987 1.336795 CCACAAATCAGCGGGAAAACC 60.337 52.381 0.00 0.00 0.00 3.27
987 988 0.966179 ACAAATCAGCGGGAAAACCC 59.034 50.000 0.00 0.00 34.99 4.11
988 989 1.256812 CAAATCAGCGGGAAAACCCT 58.743 50.000 0.00 0.00 34.99 4.34
1121 1122 1.471676 GCTGCTTACCTACATCTGCGT 60.472 52.381 0.00 0.00 0.00 5.24
1548 1592 1.801332 CGACCTCGTCCTCGTCAAT 59.199 57.895 0.00 0.00 38.33 2.57
2269 2350 6.367983 ACTGCATATCATGGTAATTTCCACT 58.632 36.000 5.87 0.00 40.51 4.00
2310 2397 9.661563 TTTTACATGTTATTACTCCCACTAGTG 57.338 33.333 16.34 16.34 0.00 2.74
2311 2398 6.869206 ACATGTTATTACTCCCACTAGTGT 57.131 37.500 21.18 5.57 0.00 3.55
2312 2399 6.875076 ACATGTTATTACTCCCACTAGTGTC 58.125 40.000 21.18 0.52 0.00 3.67
2314 2401 6.921486 TGTTATTACTCCCACTAGTGTCAA 57.079 37.500 21.18 7.96 0.00 3.18
2315 2402 7.305813 TGTTATTACTCCCACTAGTGTCAAA 57.694 36.000 21.18 8.60 0.00 2.69
2316 2403 7.737869 TGTTATTACTCCCACTAGTGTCAAAA 58.262 34.615 21.18 9.25 0.00 2.44
2317 2404 8.212312 TGTTATTACTCCCACTAGTGTCAAAAA 58.788 33.333 21.18 10.22 0.00 1.94
2318 2405 8.501580 GTTATTACTCCCACTAGTGTCAAAAAC 58.498 37.037 21.18 10.73 0.00 2.43
2319 2406 3.463944 ACTCCCACTAGTGTCAAAAACG 58.536 45.455 21.18 3.53 0.00 3.60
2346 2438 1.553690 ATTGTGGGACGGAGGGAGTG 61.554 60.000 0.00 0.00 0.00 3.51
2383 2475 4.096833 TGTGTTCTGATTGAATGCATAGGC 59.903 41.667 0.00 0.00 36.99 3.93
2420 2512 3.930634 TCATCACAGTCAGTCAGTCAG 57.069 47.619 0.00 0.00 0.00 3.51
2421 2513 2.029560 TCATCACAGTCAGTCAGTCAGC 60.030 50.000 0.00 0.00 0.00 4.26
2422 2514 1.697284 TCACAGTCAGTCAGTCAGCT 58.303 50.000 0.00 0.00 0.00 4.24
2426 2521 2.697751 ACAGTCAGTCAGTCAGCTCTTT 59.302 45.455 0.00 0.00 0.00 2.52
2450 2545 6.321848 TGGTGAATGCTGATAATTATGCAG 57.678 37.500 13.87 14.57 38.87 4.41
2453 2548 6.860023 GGTGAATGCTGATAATTATGCAGTTC 59.140 38.462 13.87 15.17 38.87 3.01
2504 2599 6.584184 CGTCAGCGATCATGTCTTCTTTATAT 59.416 38.462 0.00 0.00 41.33 0.86
2679 2789 6.072112 ACACAGCATCTAAATGTTCGTTTT 57.928 33.333 0.00 0.00 35.18 2.43
2694 2815 6.491394 TGTTCGTTTTCTTATTTCACACTGG 58.509 36.000 0.00 0.00 0.00 4.00
2705 2826 2.636647 TCACACTGGTGCATTTGAGA 57.363 45.000 0.00 0.00 44.87 3.27
2968 3089 4.664150 TTTTTAGCAGGAAAACAGGGTG 57.336 40.909 0.00 0.00 0.00 4.61
3037 3246 6.403866 ACTGAAACAAGCATCACCAATTAA 57.596 33.333 0.00 0.00 0.00 1.40
3040 3249 7.439056 ACTGAAACAAGCATCACCAATTAAAAG 59.561 33.333 0.00 0.00 0.00 2.27
3165 3377 2.478879 GCGTAATTTTGGCCATAGCGTT 60.479 45.455 6.09 1.02 41.24 4.84
3241 3453 7.060633 GGGCGATTTTAATCTTTGCATAATACG 59.939 37.037 0.00 0.00 33.24 3.06
3243 3455 9.588774 GCGATTTTAATCTTTGCATAATACGTA 57.411 29.630 0.00 0.00 33.24 3.57
3373 3746 8.561738 TTTTTAAGGATGTCACATCTAACCTC 57.438 34.615 17.46 0.00 0.00 3.85
3374 3747 4.762289 AAGGATGTCACATCTAACCTCC 57.238 45.455 17.46 0.18 32.24 4.30
3375 3748 3.041946 AGGATGTCACATCTAACCTCCC 58.958 50.000 17.46 0.00 32.42 4.30
3377 3750 3.432326 GGATGTCACATCTAACCTCCCAC 60.432 52.174 17.46 0.00 0.00 4.61
3378 3751 2.615391 TGTCACATCTAACCTCCCACA 58.385 47.619 0.00 0.00 0.00 4.17
3379 3752 2.976185 TGTCACATCTAACCTCCCACAA 59.024 45.455 0.00 0.00 0.00 3.33
3380 3753 3.007940 TGTCACATCTAACCTCCCACAAG 59.992 47.826 0.00 0.00 0.00 3.16
3381 3754 3.008049 GTCACATCTAACCTCCCACAAGT 59.992 47.826 0.00 0.00 0.00 3.16
3382 3755 4.222145 GTCACATCTAACCTCCCACAAGTA 59.778 45.833 0.00 0.00 0.00 2.24
3383 3756 5.030147 TCACATCTAACCTCCCACAAGTAT 58.970 41.667 0.00 0.00 0.00 2.12
3384 3757 6.097839 GTCACATCTAACCTCCCACAAGTATA 59.902 42.308 0.00 0.00 0.00 1.47
3386 3759 8.008332 TCACATCTAACCTCCCACAAGTATATA 58.992 37.037 0.00 0.00 0.00 0.86
3387 3760 8.647796 CACATCTAACCTCCCACAAGTATATAA 58.352 37.037 0.00 0.00 0.00 0.98
3389 3762 9.658799 CATCTAACCTCCCACAAGTATATAATG 57.341 37.037 0.00 0.00 0.00 1.90
3390 3763 7.676947 TCTAACCTCCCACAAGTATATAATGC 58.323 38.462 0.00 0.00 0.00 3.56
3391 3764 5.904984 ACCTCCCACAAGTATATAATGCA 57.095 39.130 0.00 0.00 0.00 3.96
3392 3765 6.454223 ACCTCCCACAAGTATATAATGCAT 57.546 37.500 0.00 0.00 0.00 3.96
3393 3766 6.476378 ACCTCCCACAAGTATATAATGCATC 58.524 40.000 0.00 0.00 0.00 3.91
3394 3767 6.044287 ACCTCCCACAAGTATATAATGCATCA 59.956 38.462 0.00 0.00 0.00 3.07
3395 3768 6.942005 CCTCCCACAAGTATATAATGCATCAA 59.058 38.462 0.00 0.00 0.00 2.57
3399 3772 8.077991 CCCACAAGTATATAATGCATCAACAAG 58.922 37.037 0.00 0.00 0.00 3.16
3446 3819 7.639113 AAAAATAGACCACAAACAGAGTGAA 57.361 32.000 0.00 0.00 39.30 3.18
3447 3820 7.639113 AAAATAGACCACAAACAGAGTGAAA 57.361 32.000 0.00 0.00 39.30 2.69
3449 3822 7.823745 AATAGACCACAAACAGAGTGAAAAT 57.176 32.000 0.00 0.00 39.30 1.82
3450 3823 5.757850 AGACCACAAACAGAGTGAAAATC 57.242 39.130 0.00 0.00 39.30 2.17
3451 3824 5.192927 AGACCACAAACAGAGTGAAAATCA 58.807 37.500 0.00 0.00 39.30 2.57
3456 3829 7.122055 ACCACAAACAGAGTGAAAATCAGTTTA 59.878 33.333 0.00 0.00 46.29 2.01
3459 3832 9.125026 ACAAACAGAGTGAAAATCAGTTTAGAT 57.875 29.630 0.00 0.00 46.29 1.98
3460 3833 9.390795 CAAACAGAGTGAAAATCAGTTTAGATG 57.609 33.333 0.00 0.00 46.29 2.90
3461 3834 8.682936 AACAGAGTGAAAATCAGTTTAGATGT 57.317 30.769 0.00 0.00 37.35 3.06
3462 3835 8.092521 ACAGAGTGAAAATCAGTTTAGATGTG 57.907 34.615 0.00 0.00 30.01 3.21
3463 3836 7.933577 ACAGAGTGAAAATCAGTTTAGATGTGA 59.066 33.333 0.00 0.00 30.01 3.58
3465 3838 7.933577 AGAGTGAAAATCAGTTTAGATGTGACA 59.066 33.333 0.00 0.00 30.01 3.58
3466 3839 8.627208 AGTGAAAATCAGTTTAGATGTGACAT 57.373 30.769 0.00 0.00 0.00 3.06
3474 3847 8.902540 TCAGTTTAGATGTGACATAACTTTGT 57.097 30.769 8.96 0.00 0.00 2.83
3475 3848 8.988934 TCAGTTTAGATGTGACATAACTTTGTC 58.011 33.333 8.96 0.00 45.05 3.18
3502 3900 2.741145 AGATGTGTCCTAGACAGACCC 58.259 52.381 0.00 0.00 43.57 4.46
3506 3904 2.832129 TGTGTCCTAGACAGACCCATTC 59.168 50.000 0.00 0.00 43.57 2.67
3519 3917 5.545723 ACAGACCCATTCCCTCTAGATATTG 59.454 44.000 0.00 0.00 0.00 1.90
3546 3944 2.851263 TACTTGTTCCTTCATGCGGT 57.149 45.000 0.00 0.00 0.00 5.68
3627 4025 5.690464 ATTACCATCAGAGCTCTTCACTT 57.310 39.130 15.27 1.09 0.00 3.16
3633 4031 6.609212 ACCATCAGAGCTCTTCACTTTCTATA 59.391 38.462 15.27 0.00 0.00 1.31
3716 4114 4.151157 GCTTTCTTCATTCACCAAATGTGC 59.849 41.667 0.00 0.00 45.03 4.57
3728 4126 3.958147 AATGTGCGCACCTCCCTCG 62.958 63.158 35.72 0.00 0.00 4.63
4052 4451 3.188048 CCAAGTGCTGCTTCTTAAGAGTG 59.812 47.826 5.12 4.43 34.69 3.51
4139 4538 0.601046 TTCAACAGTGGAGAGCAGCG 60.601 55.000 0.00 0.00 0.00 5.18
4257 4656 6.839124 TTTTGGATGTGCTGAACTATGAAT 57.161 33.333 0.00 0.00 0.00 2.57
4690 5124 6.308766 CCTTTGTTGCTTTGCATGTAACTATC 59.691 38.462 17.10 0.00 38.76 2.08
4694 5128 5.756195 TGCTTTGCATGTAACTATCATCC 57.244 39.130 0.00 0.00 31.71 3.51
4734 5180 2.858344 TCGCGTGCTTATCTCTTTTAGC 59.142 45.455 5.77 0.00 0.00 3.09
4737 5183 4.582459 GCGTGCTTATCTCTTTTAGCTTG 58.418 43.478 0.00 0.00 34.77 4.01
4801 5247 9.644993 TCGTTTGATCTATAAATTTACATTGCG 57.355 29.630 0.00 0.54 0.00 4.85
4813 5397 2.686558 ACATTGCGTTGCTAGTTGTG 57.313 45.000 0.00 0.00 0.00 3.33
4820 5404 2.223157 GCGTTGCTAGTTGTGTGTTCAA 60.223 45.455 0.00 0.00 0.00 2.69
4895 5583 5.948742 ACCTCGGTAGTACTTAGTAGAGT 57.051 43.478 0.00 0.00 0.00 3.24
4938 5626 7.543947 TTGAGTAGAATGAACTGCATGTATG 57.456 36.000 0.00 0.00 37.28 2.39
4993 5681 3.915437 ACAAACCTGTGATAAAAGCCG 57.085 42.857 0.00 0.00 33.30 5.52
4995 5683 1.173913 AACCTGTGATAAAAGCCGGC 58.826 50.000 21.89 21.89 0.00 6.13
5001 5689 0.958382 TGATAAAAGCCGGCGCAACT 60.958 50.000 23.20 7.24 37.52 3.16
5072 5760 5.874810 GGTGTCATCAGCATACTACAGAAAA 59.125 40.000 0.00 0.00 41.16 2.29
5109 5876 0.179032 TGGTTGTCACGGCTCACATT 60.179 50.000 0.00 0.00 0.00 2.71
5138 5905 5.217978 ACCGTTCACATGTTTAAGACCTA 57.782 39.130 0.00 0.00 0.00 3.08
5141 5908 5.642063 CCGTTCACATGTTTAAGACCTACAT 59.358 40.000 0.00 0.00 32.98 2.29
5175 5942 7.231317 TGAAATCTGTTGCCTCACTTTCTAATT 59.769 33.333 0.00 0.00 0.00 1.40
5184 5951 5.185828 GCCTCACTTTCTAATTGGGAATGTT 59.814 40.000 9.90 0.00 31.67 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 0.685097 AGTCTAACGCCCACACATGT 59.315 50.000 0.00 0.00 0.00 3.21
11 12 1.808411 AAGTCTAACGCCCACACATG 58.192 50.000 0.00 0.00 0.00 3.21
12 13 2.561478 AAAGTCTAACGCCCACACAT 57.439 45.000 0.00 0.00 0.00 3.21
13 14 2.215196 GAAAAGTCTAACGCCCACACA 58.785 47.619 0.00 0.00 0.00 3.72
14 15 2.215196 TGAAAAGTCTAACGCCCACAC 58.785 47.619 0.00 0.00 0.00 3.82
15 16 2.623878 TGAAAAGTCTAACGCCCACA 57.376 45.000 0.00 0.00 0.00 4.17
16 17 5.616488 TTTATGAAAAGTCTAACGCCCAC 57.384 39.130 0.00 0.00 0.00 4.61
17 18 6.827586 ATTTTATGAAAAGTCTAACGCCCA 57.172 33.333 0.00 0.00 33.22 5.36
18 19 9.285770 CTTAATTTTATGAAAAGTCTAACGCCC 57.714 33.333 0.00 0.00 33.22 6.13
19 20 9.836076 ACTTAATTTTATGAAAAGTCTAACGCC 57.164 29.630 0.00 0.00 33.22 5.68
39 40 9.765795 CCTCCGTTCTAAAATAGATGACTTAAT 57.234 33.333 0.00 0.00 34.22 1.40
40 41 8.202137 CCCTCCGTTCTAAAATAGATGACTTAA 58.798 37.037 0.00 0.00 34.22 1.85
41 42 7.562454 TCCCTCCGTTCTAAAATAGATGACTTA 59.438 37.037 0.00 0.00 34.22 2.24
42 43 6.383147 TCCCTCCGTTCTAAAATAGATGACTT 59.617 38.462 0.00 0.00 34.22 3.01
43 44 5.897824 TCCCTCCGTTCTAAAATAGATGACT 59.102 40.000 0.00 0.00 34.22 3.41
44 45 6.158023 TCCCTCCGTTCTAAAATAGATGAC 57.842 41.667 0.00 0.00 34.22 3.06
45 46 5.897824 ACTCCCTCCGTTCTAAAATAGATGA 59.102 40.000 0.00 0.00 34.22 2.92
46 47 6.163135 ACTCCCTCCGTTCTAAAATAGATG 57.837 41.667 0.00 0.00 34.22 2.90
47 48 6.494146 CCTACTCCCTCCGTTCTAAAATAGAT 59.506 42.308 0.00 0.00 34.22 1.98
48 49 5.832060 CCTACTCCCTCCGTTCTAAAATAGA 59.168 44.000 0.00 0.00 0.00 1.98
49 50 5.832060 TCCTACTCCCTCCGTTCTAAAATAG 59.168 44.000 0.00 0.00 0.00 1.73
50 51 5.595952 GTCCTACTCCCTCCGTTCTAAAATA 59.404 44.000 0.00 0.00 0.00 1.40
51 52 4.405036 GTCCTACTCCCTCCGTTCTAAAAT 59.595 45.833 0.00 0.00 0.00 1.82
52 53 3.766051 GTCCTACTCCCTCCGTTCTAAAA 59.234 47.826 0.00 0.00 0.00 1.52
53 54 3.359950 GTCCTACTCCCTCCGTTCTAAA 58.640 50.000 0.00 0.00 0.00 1.85
54 55 2.357569 GGTCCTACTCCCTCCGTTCTAA 60.358 54.545 0.00 0.00 0.00 2.10
55 56 1.213926 GGTCCTACTCCCTCCGTTCTA 59.786 57.143 0.00 0.00 0.00 2.10
56 57 0.033306 GGTCCTACTCCCTCCGTTCT 60.033 60.000 0.00 0.00 0.00 3.01
57 58 0.324091 TGGTCCTACTCCCTCCGTTC 60.324 60.000 0.00 0.00 0.00 3.95
58 59 0.338814 ATGGTCCTACTCCCTCCGTT 59.661 55.000 0.00 0.00 0.00 4.44
59 60 1.145325 CTATGGTCCTACTCCCTCCGT 59.855 57.143 0.00 0.00 0.00 4.69
60 61 1.145325 ACTATGGTCCTACTCCCTCCG 59.855 57.143 0.00 0.00 0.00 4.63
61 62 3.331718 AACTATGGTCCTACTCCCTCC 57.668 52.381 0.00 0.00 0.00 4.30
62 63 5.163066 ACTCTAACTATGGTCCTACTCCCTC 60.163 48.000 0.00 0.00 0.00 4.30
63 64 4.732957 ACTCTAACTATGGTCCTACTCCCT 59.267 45.833 0.00 0.00 0.00 4.20
64 65 4.828387 CACTCTAACTATGGTCCTACTCCC 59.172 50.000 0.00 0.00 0.00 4.30
65 66 5.299782 CACACTCTAACTATGGTCCTACTCC 59.700 48.000 0.00 0.00 0.00 3.85
66 67 6.038492 GTCACACTCTAACTATGGTCCTACTC 59.962 46.154 0.00 0.00 0.00 2.59
67 68 5.887035 GTCACACTCTAACTATGGTCCTACT 59.113 44.000 0.00 0.00 0.00 2.57
68 69 5.067544 GGTCACACTCTAACTATGGTCCTAC 59.932 48.000 0.00 0.00 0.00 3.18
77 78 2.532843 GTGGGGGTCACACTCTAACTA 58.467 52.381 0.00 0.00 45.39 2.24
94 95 5.952947 TGTATTAAAGTTATGTTGGGGGTGG 59.047 40.000 0.00 0.00 0.00 4.61
95 96 6.096282 CCTGTATTAAAGTTATGTTGGGGGTG 59.904 42.308 0.00 0.00 0.00 4.61
96 97 6.192044 CCTGTATTAAAGTTATGTTGGGGGT 58.808 40.000 0.00 0.00 0.00 4.95
97 98 6.192044 ACCTGTATTAAAGTTATGTTGGGGG 58.808 40.000 0.00 0.00 0.00 5.40
98 99 7.712204 AACCTGTATTAAAGTTATGTTGGGG 57.288 36.000 0.00 0.00 0.00 4.96
99 100 9.675464 TCTAACCTGTATTAAAGTTATGTTGGG 57.325 33.333 0.00 0.00 0.00 4.12
132 133 3.991773 CACCATTTTTGAGAGTGGCATTG 59.008 43.478 0.00 0.00 35.11 2.82
142 143 3.866883 ATAACGCCCACCATTTTTGAG 57.133 42.857 0.00 0.00 0.00 3.02
143 144 4.608948 AAATAACGCCCACCATTTTTGA 57.391 36.364 0.00 0.00 0.00 2.69
144 145 5.681337 AAAAATAACGCCCACCATTTTTG 57.319 34.783 0.00 0.00 38.49 2.44
145 146 7.041030 CCTTTAAAAATAACGCCCACCATTTTT 60.041 33.333 8.42 8.42 41.21 1.94
146 147 6.428465 CCTTTAAAAATAACGCCCACCATTTT 59.572 34.615 0.00 0.00 33.24 1.82
147 148 5.935206 CCTTTAAAAATAACGCCCACCATTT 59.065 36.000 0.00 0.00 0.00 2.32
148 149 5.246429 TCCTTTAAAAATAACGCCCACCATT 59.754 36.000 0.00 0.00 0.00 3.16
149 150 4.773149 TCCTTTAAAAATAACGCCCACCAT 59.227 37.500 0.00 0.00 0.00 3.55
150 151 4.150359 TCCTTTAAAAATAACGCCCACCA 58.850 39.130 0.00 0.00 0.00 4.17
151 152 4.787260 TCCTTTAAAAATAACGCCCACC 57.213 40.909 0.00 0.00 0.00 4.61
152 153 6.869388 TCATTTCCTTTAAAAATAACGCCCAC 59.131 34.615 0.00 0.00 0.00 4.61
153 154 6.994221 TCATTTCCTTTAAAAATAACGCCCA 58.006 32.000 0.00 0.00 0.00 5.36
154 155 7.892778 TTCATTTCCTTTAAAAATAACGCCC 57.107 32.000 0.00 0.00 0.00 6.13
227 228 7.296098 TCTAAGGGGTATAGGACTACTGAAAG 58.704 42.308 0.00 0.00 42.29 2.62
228 229 7.229951 TCTAAGGGGTATAGGACTACTGAAA 57.770 40.000 0.00 0.00 0.00 2.69
229 230 6.853669 TCTAAGGGGTATAGGACTACTGAA 57.146 41.667 0.00 0.00 0.00 3.02
230 231 8.712168 ATATCTAAGGGGTATAGGACTACTGA 57.288 38.462 0.00 0.00 0.00 3.41
235 236 7.833183 CGTGTAATATCTAAGGGGTATAGGACT 59.167 40.741 0.00 0.00 0.00 3.85
236 237 7.831193 TCGTGTAATATCTAAGGGGTATAGGAC 59.169 40.741 0.00 0.00 0.00 3.85
237 238 7.932134 TCGTGTAATATCTAAGGGGTATAGGA 58.068 38.462 0.00 0.00 0.00 2.94
238 239 8.585471 TTCGTGTAATATCTAAGGGGTATAGG 57.415 38.462 0.00 0.00 0.00 2.57
239 240 9.458727 TCTTCGTGTAATATCTAAGGGGTATAG 57.541 37.037 0.00 0.00 0.00 1.31
240 241 9.986157 ATCTTCGTGTAATATCTAAGGGGTATA 57.014 33.333 0.00 0.00 0.00 1.47
241 242 8.896722 ATCTTCGTGTAATATCTAAGGGGTAT 57.103 34.615 0.00 0.00 0.00 2.73
242 243 7.395489 GGATCTTCGTGTAATATCTAAGGGGTA 59.605 40.741 0.00 0.00 0.00 3.69
243 244 6.210984 GGATCTTCGTGTAATATCTAAGGGGT 59.789 42.308 0.00 0.00 0.00 4.95
244 245 6.210784 TGGATCTTCGTGTAATATCTAAGGGG 59.789 42.308 0.00 0.00 0.00 4.79
245 246 7.228314 TGGATCTTCGTGTAATATCTAAGGG 57.772 40.000 0.00 0.00 0.00 3.95
246 247 7.276658 GCATGGATCTTCGTGTAATATCTAAGG 59.723 40.741 0.00 0.00 0.00 2.69
247 248 7.814587 TGCATGGATCTTCGTGTAATATCTAAG 59.185 37.037 0.00 0.00 0.00 2.18
248 249 7.666623 TGCATGGATCTTCGTGTAATATCTAA 58.333 34.615 0.00 0.00 0.00 2.10
249 250 7.176690 TCTGCATGGATCTTCGTGTAATATCTA 59.823 37.037 0.00 0.00 0.00 1.98
250 251 6.015095 TCTGCATGGATCTTCGTGTAATATCT 60.015 38.462 0.00 0.00 0.00 1.98
251 252 6.159293 TCTGCATGGATCTTCGTGTAATATC 58.841 40.000 0.00 0.00 0.00 1.63
252 253 6.101650 TCTGCATGGATCTTCGTGTAATAT 57.898 37.500 0.00 0.00 0.00 1.28
253 254 5.529581 TCTGCATGGATCTTCGTGTAATA 57.470 39.130 0.00 0.00 0.00 0.98
254 255 4.406648 TCTGCATGGATCTTCGTGTAAT 57.593 40.909 0.00 0.00 0.00 1.89
255 256 3.885724 TCTGCATGGATCTTCGTGTAA 57.114 42.857 0.00 0.00 0.00 2.41
256 257 4.406648 AATCTGCATGGATCTTCGTGTA 57.593 40.909 0.00 0.00 0.00 2.90
257 258 2.996249 ATCTGCATGGATCTTCGTGT 57.004 45.000 0.00 0.00 0.00 4.49
258 259 4.627611 AAAATCTGCATGGATCTTCGTG 57.372 40.909 0.00 0.00 0.00 4.35
259 260 6.757897 TTTAAAATCTGCATGGATCTTCGT 57.242 33.333 0.00 0.00 0.00 3.85
260 261 9.734620 TTTATTTAAAATCTGCATGGATCTTCG 57.265 29.630 0.00 0.00 0.00 3.79
267 268 9.212687 CGCAAAATTTATTTAAAATCTGCATGG 57.787 29.630 13.44 0.00 31.74 3.66
268 269 8.726836 GCGCAAAATTTATTTAAAATCTGCATG 58.273 29.630 0.30 0.00 31.74 4.06
269 270 7.635587 CGCGCAAAATTTATTTAAAATCTGCAT 59.364 29.630 8.75 0.00 31.74 3.96
270 271 6.952635 CGCGCAAAATTTATTTAAAATCTGCA 59.047 30.769 8.75 0.00 31.74 4.41
271 272 6.407753 CCGCGCAAAATTTATTTAAAATCTGC 59.592 34.615 8.75 0.00 0.00 4.26
272 273 7.670916 TCCGCGCAAAATTTATTTAAAATCTG 58.329 30.769 8.75 0.00 0.00 2.90
273 274 7.820044 TCCGCGCAAAATTTATTTAAAATCT 57.180 28.000 8.75 0.00 0.00 2.40
274 275 8.539674 AGATCCGCGCAAAATTTATTTAAAATC 58.460 29.630 8.75 0.00 0.00 2.17
275 276 8.419076 AGATCCGCGCAAAATTTATTTAAAAT 57.581 26.923 8.75 0.00 0.00 1.82
276 277 7.009723 GGAGATCCGCGCAAAATTTATTTAAAA 59.990 33.333 8.75 0.00 0.00 1.52
277 278 6.474102 GGAGATCCGCGCAAAATTTATTTAAA 59.526 34.615 8.75 0.00 0.00 1.52
278 279 5.974751 GGAGATCCGCGCAAAATTTATTTAA 59.025 36.000 8.75 0.00 0.00 1.52
279 280 5.516090 GGAGATCCGCGCAAAATTTATTTA 58.484 37.500 8.75 0.00 0.00 1.40
280 281 4.359706 GGAGATCCGCGCAAAATTTATTT 58.640 39.130 8.75 0.00 0.00 1.40
281 282 3.964909 GGAGATCCGCGCAAAATTTATT 58.035 40.909 8.75 0.00 0.00 1.40
282 283 3.626028 GGAGATCCGCGCAAAATTTAT 57.374 42.857 8.75 0.00 0.00 1.40
295 296 4.945246 TGTCTAACTTTATGCGGAGATCC 58.055 43.478 0.00 0.00 0.00 3.36
296 297 5.833082 TCTGTCTAACTTTATGCGGAGATC 58.167 41.667 0.00 0.00 0.00 2.75
297 298 5.854010 TCTGTCTAACTTTATGCGGAGAT 57.146 39.130 0.00 0.00 0.00 2.75
298 299 5.854010 ATCTGTCTAACTTTATGCGGAGA 57.146 39.130 0.00 0.00 0.00 3.71
299 300 6.910536 AAATCTGTCTAACTTTATGCGGAG 57.089 37.500 0.00 0.00 0.00 4.63
300 301 6.403200 GCAAAATCTGTCTAACTTTATGCGGA 60.403 38.462 0.00 0.00 0.00 5.54
301 302 5.739161 GCAAAATCTGTCTAACTTTATGCGG 59.261 40.000 0.00 0.00 0.00 5.69
302 303 6.314018 TGCAAAATCTGTCTAACTTTATGCG 58.686 36.000 0.00 0.00 0.00 4.73
303 304 8.589629 CAATGCAAAATCTGTCTAACTTTATGC 58.410 33.333 0.00 0.00 0.00 3.14
304 305 9.844790 TCAATGCAAAATCTGTCTAACTTTATG 57.155 29.630 0.00 0.00 0.00 1.90
305 306 9.846248 GTCAATGCAAAATCTGTCTAACTTTAT 57.154 29.630 0.00 0.00 0.00 1.40
306 307 9.066892 AGTCAATGCAAAATCTGTCTAACTTTA 57.933 29.630 0.00 0.00 0.00 1.85
307 308 7.945134 AGTCAATGCAAAATCTGTCTAACTTT 58.055 30.769 0.00 0.00 0.00 2.66
308 309 7.516198 AGTCAATGCAAAATCTGTCTAACTT 57.484 32.000 0.00 0.00 0.00 2.66
309 310 7.516198 AAGTCAATGCAAAATCTGTCTAACT 57.484 32.000 0.00 0.00 0.00 2.24
310 311 9.334693 CTTAAGTCAATGCAAAATCTGTCTAAC 57.665 33.333 0.00 0.00 0.00 2.34
311 312 9.066892 ACTTAAGTCAATGCAAAATCTGTCTAA 57.933 29.630 1.12 0.00 0.00 2.10
312 313 8.621532 ACTTAAGTCAATGCAAAATCTGTCTA 57.378 30.769 1.12 0.00 0.00 2.59
313 314 7.516198 ACTTAAGTCAATGCAAAATCTGTCT 57.484 32.000 1.12 0.00 0.00 3.41
314 315 7.862372 TCAACTTAAGTCAATGCAAAATCTGTC 59.138 33.333 8.95 0.00 0.00 3.51
315 316 7.649306 GTCAACTTAAGTCAATGCAAAATCTGT 59.351 33.333 8.95 0.00 0.00 3.41
316 317 7.864379 AGTCAACTTAAGTCAATGCAAAATCTG 59.136 33.333 8.95 0.00 0.00 2.90
317 318 7.945134 AGTCAACTTAAGTCAATGCAAAATCT 58.055 30.769 8.95 0.00 0.00 2.40
318 319 9.677567 TTAGTCAACTTAAGTCAATGCAAAATC 57.322 29.630 8.95 0.00 0.00 2.17
319 320 9.683069 CTTAGTCAACTTAAGTCAATGCAAAAT 57.317 29.630 8.95 0.00 0.00 1.82
320 321 8.898761 TCTTAGTCAACTTAAGTCAATGCAAAA 58.101 29.630 8.95 0.00 0.00 2.44
321 322 8.445275 TCTTAGTCAACTTAAGTCAATGCAAA 57.555 30.769 8.95 0.00 0.00 3.68
322 323 8.621532 ATCTTAGTCAACTTAAGTCAATGCAA 57.378 30.769 8.95 0.00 0.00 4.08
323 324 8.621532 AATCTTAGTCAACTTAAGTCAATGCA 57.378 30.769 8.95 0.00 0.00 3.96
327 328 9.772973 TGCTAAATCTTAGTCAACTTAAGTCAA 57.227 29.630 8.95 0.00 0.00 3.18
328 329 9.772973 TTGCTAAATCTTAGTCAACTTAAGTCA 57.227 29.630 8.95 0.00 0.00 3.41
350 351 8.742777 TGAGCTAAGTATCATTTTGATTTTGCT 58.257 29.630 9.20 9.20 37.91 3.91
351 352 8.915871 TGAGCTAAGTATCATTTTGATTTTGC 57.084 30.769 0.00 0.00 38.26 3.68
370 371 7.713507 TGAAACTTTTTAGCACTACTTGAGCTA 59.286 33.333 0.00 0.00 42.42 3.32
371 372 6.542370 TGAAACTTTTTAGCACTACTTGAGCT 59.458 34.615 0.00 0.00 44.49 4.09
372 373 6.725246 TGAAACTTTTTAGCACTACTTGAGC 58.275 36.000 0.00 0.00 0.00 4.26
373 374 9.736023 ATTTGAAACTTTTTAGCACTACTTGAG 57.264 29.630 0.00 0.00 0.00 3.02
374 375 9.730420 GATTTGAAACTTTTTAGCACTACTTGA 57.270 29.630 0.00 0.00 0.00 3.02
375 376 9.515020 TGATTTGAAACTTTTTAGCACTACTTG 57.485 29.630 0.00 0.00 0.00 3.16
436 437 1.267806 CAGTGACGCCAGCATCTTTTT 59.732 47.619 0.00 0.00 0.00 1.94
437 438 0.877071 CAGTGACGCCAGCATCTTTT 59.123 50.000 0.00 0.00 0.00 2.27
438 439 0.957395 CCAGTGACGCCAGCATCTTT 60.957 55.000 0.00 0.00 0.00 2.52
439 440 1.376424 CCAGTGACGCCAGCATCTT 60.376 57.895 0.00 0.00 0.00 2.40
440 441 2.267006 CCAGTGACGCCAGCATCT 59.733 61.111 0.00 0.00 0.00 2.90
441 442 2.103042 GTCCAGTGACGCCAGCATC 61.103 63.158 0.00 0.00 0.00 3.91
442 443 2.046892 GTCCAGTGACGCCAGCAT 60.047 61.111 0.00 0.00 0.00 3.79
443 444 1.468506 TAAGTCCAGTGACGCCAGCA 61.469 55.000 0.00 0.00 46.51 4.41
444 445 0.737715 CTAAGTCCAGTGACGCCAGC 60.738 60.000 0.00 0.00 46.51 4.85
445 446 0.888619 TCTAAGTCCAGTGACGCCAG 59.111 55.000 0.00 0.00 46.51 4.85
446 447 0.601558 GTCTAAGTCCAGTGACGCCA 59.398 55.000 0.00 0.00 46.51 5.69
447 448 0.889306 AGTCTAAGTCCAGTGACGCC 59.111 55.000 0.00 0.00 46.51 5.68
448 449 1.540267 TGAGTCTAAGTCCAGTGACGC 59.460 52.381 0.00 0.00 46.51 5.19
449 450 3.253677 AGTTGAGTCTAAGTCCAGTGACG 59.746 47.826 0.00 0.00 46.51 4.35
450 451 4.857509 AGTTGAGTCTAAGTCCAGTGAC 57.142 45.455 0.00 0.00 42.09 3.67
451 452 6.576662 CTTAGTTGAGTCTAAGTCCAGTGA 57.423 41.667 0.00 0.00 40.84 3.41
474 475 4.212636 GCCTAGATCTCAGTCGACTTAGAC 59.787 50.000 27.22 20.55 41.23 2.59
475 476 4.382291 GCCTAGATCTCAGTCGACTTAGA 58.618 47.826 26.94 26.94 31.55 2.10
476 477 3.500680 GGCCTAGATCTCAGTCGACTTAG 59.499 52.174 17.26 18.13 0.00 2.18
477 478 3.136809 AGGCCTAGATCTCAGTCGACTTA 59.863 47.826 17.26 7.41 0.00 2.24
478 479 2.092103 AGGCCTAGATCTCAGTCGACTT 60.092 50.000 17.26 0.01 0.00 3.01
479 480 1.493022 AGGCCTAGATCTCAGTCGACT 59.507 52.381 13.58 13.58 0.00 4.18
480 481 1.606668 CAGGCCTAGATCTCAGTCGAC 59.393 57.143 3.98 7.70 0.00 4.20
481 482 1.490910 TCAGGCCTAGATCTCAGTCGA 59.509 52.381 3.98 0.00 0.00 4.20
482 483 1.879380 CTCAGGCCTAGATCTCAGTCG 59.121 57.143 3.98 0.00 0.00 4.18
483 484 2.944129 ACTCAGGCCTAGATCTCAGTC 58.056 52.381 3.98 0.00 0.00 3.51
484 485 3.295973 GAACTCAGGCCTAGATCTCAGT 58.704 50.000 3.98 0.00 0.00 3.41
485 486 3.295093 TGAACTCAGGCCTAGATCTCAG 58.705 50.000 3.98 0.00 0.00 3.35
486 487 3.388552 TGAACTCAGGCCTAGATCTCA 57.611 47.619 3.98 8.34 0.00 3.27
487 488 3.704061 ACTTGAACTCAGGCCTAGATCTC 59.296 47.826 3.98 5.93 0.00 2.75
488 489 3.450457 CACTTGAACTCAGGCCTAGATCT 59.550 47.826 3.98 0.00 0.00 2.75
489 490 3.196685 ACACTTGAACTCAGGCCTAGATC 59.803 47.826 3.98 8.61 0.00 2.75
490 491 3.177228 ACACTTGAACTCAGGCCTAGAT 58.823 45.455 3.98 0.00 0.00 1.98
491 492 2.609747 ACACTTGAACTCAGGCCTAGA 58.390 47.619 3.98 4.66 0.00 2.43
492 493 4.537135 TTACACTTGAACTCAGGCCTAG 57.463 45.455 3.98 6.30 0.00 3.02
493 494 4.081087 GGATTACACTTGAACTCAGGCCTA 60.081 45.833 3.98 0.00 0.00 3.93
494 495 3.307762 GGATTACACTTGAACTCAGGCCT 60.308 47.826 0.00 0.00 0.00 5.19
495 496 3.010420 GGATTACACTTGAACTCAGGCC 58.990 50.000 0.00 0.00 0.00 5.19
496 497 3.437049 GTGGATTACACTTGAACTCAGGC 59.563 47.826 0.00 0.00 46.72 4.85
529 530 9.970395 CACACCGTATATTCTAACCTACATTAA 57.030 33.333 0.00 0.00 0.00 1.40
530 531 9.353431 TCACACCGTATATTCTAACCTACATTA 57.647 33.333 0.00 0.00 0.00 1.90
531 532 8.241497 TCACACCGTATATTCTAACCTACATT 57.759 34.615 0.00 0.00 0.00 2.71
532 533 7.828508 TCACACCGTATATTCTAACCTACAT 57.171 36.000 0.00 0.00 0.00 2.29
533 534 7.828508 ATCACACCGTATATTCTAACCTACA 57.171 36.000 0.00 0.00 0.00 2.74
534 535 8.975439 CAAATCACACCGTATATTCTAACCTAC 58.025 37.037 0.00 0.00 0.00 3.18
535 536 7.654520 GCAAATCACACCGTATATTCTAACCTA 59.345 37.037 0.00 0.00 0.00 3.08
536 537 6.482308 GCAAATCACACCGTATATTCTAACCT 59.518 38.462 0.00 0.00 0.00 3.50
537 538 6.259167 TGCAAATCACACCGTATATTCTAACC 59.741 38.462 0.00 0.00 0.00 2.85
538 539 7.241663 TGCAAATCACACCGTATATTCTAAC 57.758 36.000 0.00 0.00 0.00 2.34
539 540 7.851387 TTGCAAATCACACCGTATATTCTAA 57.149 32.000 0.00 0.00 0.00 2.10
540 541 7.551262 AGTTTGCAAATCACACCGTATATTCTA 59.449 33.333 16.21 0.00 0.00 2.10
541 542 6.374333 AGTTTGCAAATCACACCGTATATTCT 59.626 34.615 16.21 0.00 0.00 2.40
542 543 6.551736 AGTTTGCAAATCACACCGTATATTC 58.448 36.000 16.21 0.00 0.00 1.75
543 544 6.509418 AGTTTGCAAATCACACCGTATATT 57.491 33.333 16.21 0.00 0.00 1.28
544 545 7.045416 TCTAGTTTGCAAATCACACCGTATAT 58.955 34.615 16.21 0.00 0.00 0.86
545 546 6.399743 TCTAGTTTGCAAATCACACCGTATA 58.600 36.000 16.21 0.00 0.00 1.47
546 547 5.242434 TCTAGTTTGCAAATCACACCGTAT 58.758 37.500 16.21 0.00 0.00 3.06
547 548 4.633175 TCTAGTTTGCAAATCACACCGTA 58.367 39.130 16.21 0.00 0.00 4.02
548 549 3.472652 TCTAGTTTGCAAATCACACCGT 58.527 40.909 16.21 0.00 0.00 4.83
549 550 4.481930 TTCTAGTTTGCAAATCACACCG 57.518 40.909 16.21 0.76 0.00 4.94
550 551 7.542130 CCTAATTTCTAGTTTGCAAATCACACC 59.458 37.037 16.21 0.80 0.00 4.16
551 552 7.062255 GCCTAATTTCTAGTTTGCAAATCACAC 59.938 37.037 16.21 2.24 0.00 3.82
552 553 7.090173 GCCTAATTTCTAGTTTGCAAATCACA 58.910 34.615 16.21 0.24 0.00 3.58
553 554 7.090173 TGCCTAATTTCTAGTTTGCAAATCAC 58.910 34.615 16.21 3.08 0.00 3.06
554 555 7.225784 TGCCTAATTTCTAGTTTGCAAATCA 57.774 32.000 16.21 5.36 0.00 2.57
555 556 8.707938 AATGCCTAATTTCTAGTTTGCAAATC 57.292 30.769 16.21 9.21 0.00 2.17
556 557 9.506018 AAAATGCCTAATTTCTAGTTTGCAAAT 57.494 25.926 16.21 7.20 37.51 2.32
557 558 8.900983 AAAATGCCTAATTTCTAGTTTGCAAA 57.099 26.923 8.05 8.05 37.51 3.68
558 559 8.900983 AAAAATGCCTAATTTCTAGTTTGCAA 57.099 26.923 0.00 0.00 37.51 4.08
584 585 9.965824 GTTTCATTTGAATTTTCTGTCCTCTAA 57.034 29.630 0.00 0.00 33.54 2.10
585 586 9.354673 AGTTTCATTTGAATTTTCTGTCCTCTA 57.645 29.630 0.00 0.00 33.54 2.43
586 587 8.242729 AGTTTCATTTGAATTTTCTGTCCTCT 57.757 30.769 0.00 0.00 33.54 3.69
635 636 9.720769 AGTACTACTAAAAGCTGCTAAATGAAA 57.279 29.630 0.90 0.00 0.00 2.69
637 638 9.798994 GTAGTACTACTAAAAGCTGCTAAATGA 57.201 33.333 23.17 0.00 31.62 2.57
638 639 9.582431 TGTAGTACTACTAAAAGCTGCTAAATG 57.418 33.333 28.56 0.00 37.00 2.32
666 667 8.878211 ACACAGATCCATGTAGATTTCATCTAT 58.122 33.333 0.00 0.00 43.25 1.98
667 668 8.146412 CACACAGATCCATGTAGATTTCATCTA 58.854 37.037 0.00 0.00 40.76 1.98
668 669 6.990939 CACACAGATCCATGTAGATTTCATCT 59.009 38.462 0.00 0.00 43.33 2.90
669 670 6.765036 ACACACAGATCCATGTAGATTTCATC 59.235 38.462 0.00 0.00 0.00 2.92
670 671 6.656902 ACACACAGATCCATGTAGATTTCAT 58.343 36.000 0.00 0.00 0.00 2.57
671 672 6.053632 ACACACAGATCCATGTAGATTTCA 57.946 37.500 0.00 0.00 0.00 2.69
672 673 8.391106 GTTTACACACAGATCCATGTAGATTTC 58.609 37.037 0.00 0.00 0.00 2.17
673 674 8.103305 AGTTTACACACAGATCCATGTAGATTT 58.897 33.333 0.00 0.00 0.00 2.17
674 675 7.624549 AGTTTACACACAGATCCATGTAGATT 58.375 34.615 0.00 0.00 0.00 2.40
675 676 7.124901 AGAGTTTACACACAGATCCATGTAGAT 59.875 37.037 0.00 0.00 0.00 1.98
676 677 6.437477 AGAGTTTACACACAGATCCATGTAGA 59.563 38.462 0.00 0.00 0.00 2.59
677 678 6.533012 CAGAGTTTACACACAGATCCATGTAG 59.467 42.308 0.00 0.00 0.00 2.74
678 679 6.014584 ACAGAGTTTACACACAGATCCATGTA 60.015 38.462 0.00 0.00 0.00 2.29
679 680 5.221722 ACAGAGTTTACACACAGATCCATGT 60.222 40.000 0.00 0.00 0.00 3.21
680 681 5.240891 ACAGAGTTTACACACAGATCCATG 58.759 41.667 0.00 0.00 0.00 3.66
681 682 5.247110 AGACAGAGTTTACACACAGATCCAT 59.753 40.000 0.00 0.00 0.00 3.41
682 683 4.588951 AGACAGAGTTTACACACAGATCCA 59.411 41.667 0.00 0.00 0.00 3.41
683 684 5.140747 AGACAGAGTTTACACACAGATCC 57.859 43.478 0.00 0.00 0.00 3.36
684 685 7.484035 AAAAGACAGAGTTTACACACAGATC 57.516 36.000 0.00 0.00 0.00 2.75
685 686 7.865706 AAAAAGACAGAGTTTACACACAGAT 57.134 32.000 0.00 0.00 0.00 2.90
731 732 9.362151 TCCAAAAGAATTAGGATTGTGTACTTT 57.638 29.630 0.00 0.00 28.83 2.66
732 733 8.934023 TCCAAAAGAATTAGGATTGTGTACTT 57.066 30.769 0.00 0.00 28.83 2.24
733 734 9.533831 AATCCAAAAGAATTAGGATTGTGTACT 57.466 29.630 4.86 0.00 45.56 2.73
774 775 9.262358 GTAGTATTTGTTCTGTTCAACTCTCTT 57.738 33.333 0.00 0.00 0.00 2.85
775 776 8.643324 AGTAGTATTTGTTCTGTTCAACTCTCT 58.357 33.333 0.00 0.00 0.00 3.10
776 777 8.819643 AGTAGTATTTGTTCTGTTCAACTCTC 57.180 34.615 0.00 0.00 0.00 3.20
807 808 9.871175 ACTTAGTATTTGTTTTCTCCCCTAAAA 57.129 29.630 0.00 0.00 0.00 1.52
808 809 9.871175 AACTTAGTATTTGTTTTCTCCCCTAAA 57.129 29.630 0.00 0.00 0.00 1.85
809 810 9.871175 AAACTTAGTATTTGTTTTCTCCCCTAA 57.129 29.630 0.00 0.00 30.84 2.69
810 811 9.871175 AAAACTTAGTATTTGTTTTCTCCCCTA 57.129 29.630 0.00 0.00 38.91 3.53
811 812 8.777578 AAAACTTAGTATTTGTTTTCTCCCCT 57.222 30.769 0.00 0.00 38.91 4.79
838 839 9.223099 GCTCACTTAGTATTTGTTTAACCCTAA 57.777 33.333 0.00 0.00 0.00 2.69
839 840 8.377034 TGCTCACTTAGTATTTGTTTAACCCTA 58.623 33.333 0.00 0.00 0.00 3.53
840 841 7.228590 TGCTCACTTAGTATTTGTTTAACCCT 58.771 34.615 0.00 0.00 0.00 4.34
841 842 7.443259 TGCTCACTTAGTATTTGTTTAACCC 57.557 36.000 0.00 0.00 0.00 4.11
842 843 7.021790 GCTGCTCACTTAGTATTTGTTTAACC 58.978 38.462 0.00 0.00 0.00 2.85
843 844 7.021790 GGCTGCTCACTTAGTATTTGTTTAAC 58.978 38.462 0.00 0.00 0.00 2.01
844 845 6.712998 TGGCTGCTCACTTAGTATTTGTTTAA 59.287 34.615 0.00 0.00 0.00 1.52
845 846 6.234920 TGGCTGCTCACTTAGTATTTGTTTA 58.765 36.000 0.00 0.00 0.00 2.01
846 847 5.070001 TGGCTGCTCACTTAGTATTTGTTT 58.930 37.500 0.00 0.00 0.00 2.83
847 848 4.651778 TGGCTGCTCACTTAGTATTTGTT 58.348 39.130 0.00 0.00 0.00 2.83
848 849 4.286297 TGGCTGCTCACTTAGTATTTGT 57.714 40.909 0.00 0.00 0.00 2.83
849 850 4.036027 CCATGGCTGCTCACTTAGTATTTG 59.964 45.833 0.00 0.00 0.00 2.32
850 851 4.202441 CCATGGCTGCTCACTTAGTATTT 58.798 43.478 0.00 0.00 0.00 1.40
851 852 3.434167 CCCATGGCTGCTCACTTAGTATT 60.434 47.826 6.09 0.00 0.00 1.89
852 853 2.105477 CCCATGGCTGCTCACTTAGTAT 59.895 50.000 6.09 0.00 0.00 2.12
853 854 1.486310 CCCATGGCTGCTCACTTAGTA 59.514 52.381 6.09 0.00 0.00 1.82
854 855 0.254178 CCCATGGCTGCTCACTTAGT 59.746 55.000 6.09 0.00 0.00 2.24
855 856 1.099879 GCCCATGGCTGCTCACTTAG 61.100 60.000 6.09 0.00 46.69 2.18
856 857 1.077501 GCCCATGGCTGCTCACTTA 60.078 57.895 6.09 0.00 46.69 2.24
857 858 2.362120 GCCCATGGCTGCTCACTT 60.362 61.111 6.09 0.00 46.69 3.16
950 951 4.468689 GGGGTTTCCGAGCGGAGG 62.469 72.222 11.80 0.00 46.06 4.30
1066 1067 3.461773 CAGCTCGTGGGGGTCGAT 61.462 66.667 0.00 0.00 36.73 3.59
1232 1245 3.147595 CGGGGAGGACGCTGATGA 61.148 66.667 0.00 0.00 37.50 2.92
1603 1647 1.009900 CGATGTAGAGGCGGACGAC 60.010 63.158 0.00 0.00 0.00 4.34
2142 2223 1.324736 GGATCTTAACGCTTGCGACAG 59.675 52.381 22.03 12.94 0.00 3.51
2303 2390 4.795970 AAGAGCGTTTTTGACACTAGTG 57.204 40.909 21.44 21.44 0.00 2.74
2304 2391 8.656849 CAATATAAGAGCGTTTTTGACACTAGT 58.343 33.333 0.00 0.00 0.00 2.57
2305 2392 8.656849 ACAATATAAGAGCGTTTTTGACACTAG 58.343 33.333 0.00 0.00 0.00 2.57
2306 2393 8.440059 CACAATATAAGAGCGTTTTTGACACTA 58.560 33.333 0.00 0.00 0.00 2.74
2307 2394 7.298122 CACAATATAAGAGCGTTTTTGACACT 58.702 34.615 0.00 0.00 0.00 3.55
2308 2395 6.523201 CCACAATATAAGAGCGTTTTTGACAC 59.477 38.462 0.00 0.00 0.00 3.67
2310 2397 6.027749 CCCACAATATAAGAGCGTTTTTGAC 58.972 40.000 0.00 0.00 0.00 3.18
2311 2398 5.941058 TCCCACAATATAAGAGCGTTTTTGA 59.059 36.000 0.00 0.00 0.00 2.69
2312 2399 6.027749 GTCCCACAATATAAGAGCGTTTTTG 58.972 40.000 0.00 0.00 0.00 2.44
2314 2401 4.331717 CGTCCCACAATATAAGAGCGTTTT 59.668 41.667 0.00 0.00 0.00 2.43
2315 2402 3.869246 CGTCCCACAATATAAGAGCGTTT 59.131 43.478 0.00 0.00 0.00 3.60
2316 2403 3.454375 CGTCCCACAATATAAGAGCGTT 58.546 45.455 0.00 0.00 0.00 4.84
2317 2404 2.223971 CCGTCCCACAATATAAGAGCGT 60.224 50.000 0.00 0.00 0.00 5.07
2318 2405 2.035449 TCCGTCCCACAATATAAGAGCG 59.965 50.000 0.00 0.00 0.00 5.03
2319 2406 3.555168 CCTCCGTCCCACAATATAAGAGC 60.555 52.174 0.00 0.00 0.00 4.09
2346 2438 4.036262 TCAGAACACACACCATTTACAAGC 59.964 41.667 0.00 0.00 0.00 4.01
2383 2475 8.517878 ACTGTGATGAATAAATGACTTGAAAGG 58.482 33.333 0.00 0.00 0.00 3.11
2420 2512 3.863142 ATCAGCATTCACCAAAAGAGC 57.137 42.857 0.00 0.00 0.00 4.09
2421 2513 9.459640 CATAATTATCAGCATTCACCAAAAGAG 57.540 33.333 0.00 0.00 0.00 2.85
2422 2514 7.922278 GCATAATTATCAGCATTCACCAAAAGA 59.078 33.333 0.00 0.00 0.00 2.52
2426 2521 6.321945 ACTGCATAATTATCAGCATTCACCAA 59.678 34.615 17.61 0.00 36.28 3.67
2450 2545 3.439129 GGCACCTTAACATGTGGTAGAAC 59.561 47.826 0.00 0.00 33.08 3.01
2453 2548 3.066291 TGGCACCTTAACATGTGGTAG 57.934 47.619 0.00 0.00 33.08 3.18
2679 2789 5.534278 TCAAATGCACCAGTGTGAAATAAGA 59.466 36.000 0.00 0.00 45.76 2.10
2881 3002 4.124910 GCAATAGCGGCTGTAGCA 57.875 55.556 13.86 0.00 44.36 3.49
3037 3246 7.568199 ACTAGTGATGCTTGTTTGTAACTTT 57.432 32.000 0.00 0.00 29.05 2.66
3040 3249 6.851330 GTGAACTAGTGATGCTTGTTTGTAAC 59.149 38.462 0.00 0.00 41.80 2.50
3099 3311 6.654582 GGTTGCATTTAAGTTTTCATTGGGAT 59.345 34.615 0.00 0.00 0.00 3.85
3103 3315 5.373262 GCGGTTGCATTTAAGTTTTCATTG 58.627 37.500 0.00 0.00 42.15 2.82
3241 3453 3.868077 CCTGAGCTGATGCAAACTAGTAC 59.132 47.826 0.00 0.00 42.74 2.73
3243 3455 2.568956 TCCTGAGCTGATGCAAACTAGT 59.431 45.455 0.00 0.00 42.74 2.57
3244 3456 3.257469 TCCTGAGCTGATGCAAACTAG 57.743 47.619 0.00 0.00 42.74 2.57
3246 3458 2.574006 TTCCTGAGCTGATGCAAACT 57.426 45.000 0.00 0.00 42.74 2.66
3247 3459 2.490903 ACATTCCTGAGCTGATGCAAAC 59.509 45.455 0.00 0.00 42.74 2.93
3348 3721 7.610305 GGAGGTTAGATGTGACATCCTTAAAAA 59.390 37.037 21.05 4.81 42.00 1.94
3356 3729 3.197766 TGTGGGAGGTTAGATGTGACATC 59.802 47.826 17.46 17.46 0.00 3.06
3359 3732 3.008049 ACTTGTGGGAGGTTAGATGTGAC 59.992 47.826 0.00 0.00 0.00 3.67
3361 3734 3.703001 ACTTGTGGGAGGTTAGATGTG 57.297 47.619 0.00 0.00 0.00 3.21
3363 3736 9.658799 CATTATATACTTGTGGGAGGTTAGATG 57.341 37.037 0.00 0.00 0.00 2.90
3366 3739 7.450074 TGCATTATATACTTGTGGGAGGTTAG 58.550 38.462 0.00 0.00 0.00 2.34
3368 3741 6.260700 TGCATTATATACTTGTGGGAGGTT 57.739 37.500 0.00 0.00 0.00 3.50
3371 3744 7.445096 TGTTGATGCATTATATACTTGTGGGAG 59.555 37.037 0.00 0.00 0.00 4.30
3372 3745 7.286313 TGTTGATGCATTATATACTTGTGGGA 58.714 34.615 0.00 0.00 0.00 4.37
3373 3746 7.509141 TGTTGATGCATTATATACTTGTGGG 57.491 36.000 0.00 0.00 0.00 4.61
3374 3747 8.839343 TCTTGTTGATGCATTATATACTTGTGG 58.161 33.333 0.00 0.00 0.00 4.17
3434 3807 9.390795 CATCTAAACTGATTTTCACTCTGTTTG 57.609 33.333 14.59 7.92 41.71 2.93
3435 3808 9.125026 ACATCTAAACTGATTTTCACTCTGTTT 57.875 29.630 11.33 11.33 43.11 2.83
3437 3810 7.933577 TCACATCTAAACTGATTTTCACTCTGT 59.066 33.333 0.00 0.00 0.00 3.41
3441 3814 8.627208 ATGTCACATCTAAACTGATTTTCACT 57.373 30.769 0.00 0.00 0.00 3.41
3449 3822 8.902540 ACAAAGTTATGTCACATCTAAACTGA 57.097 30.769 5.38 0.00 0.00 3.41
3477 3850 5.240623 GGTCTGTCTAGGACACATCTAGATG 59.759 48.000 27.63 27.63 43.25 2.90
3479 3852 4.385421 GGGTCTGTCTAGGACACATCTAGA 60.385 50.000 0.00 0.00 37.67 2.43
3480 3853 3.886505 GGGTCTGTCTAGGACACATCTAG 59.113 52.174 0.00 0.00 37.67 2.43
3483 3856 2.457598 TGGGTCTGTCTAGGACACATC 58.542 52.381 0.00 0.00 41.46 3.06
3488 3861 1.763545 GGGAATGGGTCTGTCTAGGAC 59.236 57.143 0.00 0.00 0.00 3.85
3491 3864 3.039252 AGAGGGAATGGGTCTGTCTAG 57.961 52.381 0.00 0.00 0.00 2.43
3492 3865 3.792114 TCTAGAGGGAATGGGTCTGTCTA 59.208 47.826 0.00 0.00 0.00 2.59
3495 3868 3.715648 ATCTAGAGGGAATGGGTCTGT 57.284 47.619 0.00 0.00 0.00 3.41
3496 3869 5.570439 GCAATATCTAGAGGGAATGGGTCTG 60.570 48.000 0.00 0.00 0.00 3.51
3497 3870 4.534103 GCAATATCTAGAGGGAATGGGTCT 59.466 45.833 0.00 0.00 0.00 3.85
3498 3871 4.287067 TGCAATATCTAGAGGGAATGGGTC 59.713 45.833 0.00 0.00 0.00 4.46
3506 3904 9.376075 CAAGTATTACATGCAATATCTAGAGGG 57.624 37.037 1.72 0.00 0.00 4.30
3519 3917 5.973565 GCATGAAGGAACAAGTATTACATGC 59.026 40.000 0.00 0.00 46.32 4.06
3633 4031 6.773976 TCACTTTCCACAACAGAAGAAAAT 57.226 33.333 0.00 0.00 0.00 1.82
3728 4126 3.686726 CAGTCAATAGTTGGAGAGCAACC 59.313 47.826 0.00 0.00 33.33 3.77
3860 4259 1.670811 CCCTCGGAATTCACGGAAATG 59.329 52.381 7.93 0.00 0.00 2.32
4139 4538 1.534175 CGACTGCTCCGGAGTGAATAC 60.534 57.143 31.43 14.86 0.00 1.89
4257 4656 5.378230 AAAGAAGCAGATACCATGGATGA 57.622 39.130 21.47 3.16 0.00 2.92
4608 5041 2.369394 CAAGGGGGTGATGTTCTAAGC 58.631 52.381 0.00 0.00 0.00 3.09
4618 5051 3.567902 AAAAATGGCAAGGGGGTGA 57.432 47.368 0.00 0.00 0.00 4.02
4639 5072 4.842531 TTCAGATATGTGAAAGGCCTGA 57.157 40.909 5.69 0.00 33.41 3.86
4694 5128 4.290155 GCGAGTATGCAACCCATAAATTG 58.710 43.478 0.00 0.00 38.11 2.32
4734 5180 4.445453 TGCATCAGACCTAATGCTACAAG 58.555 43.478 6.69 0.00 46.64 3.16
4737 5183 4.635223 TCATGCATCAGACCTAATGCTAC 58.365 43.478 6.69 0.00 46.64 3.58
4801 5247 6.885735 AAATTTGAACACACAACTAGCAAC 57.114 33.333 0.00 0.00 0.00 4.17
4895 5583 9.261180 CTACTCAAACTCTATCAGAACAACAAA 57.739 33.333 0.00 0.00 0.00 2.83
4938 5626 2.418976 GGCATCAAGTTTTACCGAGGTC 59.581 50.000 0.00 0.00 0.00 3.85
4993 5681 1.008538 CACAGGTTTCAGTTGCGCC 60.009 57.895 4.18 0.00 0.00 6.53
4995 5683 4.481930 TTTATCACAGGTTTCAGTTGCG 57.518 40.909 0.00 0.00 0.00 4.85
5001 5689 2.817258 CCGGCTTTTATCACAGGTTTCA 59.183 45.455 0.00 0.00 0.00 2.69
5109 5876 1.107114 ACATGTGAACGGTTTGCCAA 58.893 45.000 0.00 0.00 34.09 4.52
5138 5905 4.261741 GCAACAGATTTCAGTCAACCATGT 60.262 41.667 0.00 0.00 0.00 3.21
5141 5908 2.622942 GGCAACAGATTTCAGTCAACCA 59.377 45.455 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.