Multiple sequence alignment - TraesCS5A01G065500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G065500 chr5A 100.000 3043 0 0 448 3490 71396657 71399699 0.000000e+00 5620.0
1 TraesCS5A01G065500 chr5A 100.000 48 0 0 1 48 71396210 71396257 4.800000e-14 89.8
2 TraesCS5A01G065500 chr5B 94.367 2450 108 12 852 3294 84626351 84628777 0.000000e+00 3733.0
3 TraesCS5A01G065500 chr5B 92.857 210 12 3 3282 3490 84628828 84629035 5.660000e-78 302.0
4 TraesCS5A01G065500 chr5B 79.743 311 35 6 594 897 84626064 84626353 2.120000e-47 200.0
5 TraesCS5A01G065500 chr5D 94.090 2369 111 16 683 3041 75918824 75921173 0.000000e+00 3572.0
6 TraesCS5A01G065500 chr5D 88.770 374 31 8 2931 3295 75921095 75921466 6.870000e-122 448.0
7 TraesCS5A01G065500 chr5D 92.432 185 10 4 3282 3465 75921514 75921695 9.610000e-66 261.0
8 TraesCS5A01G065500 chr5D 79.612 206 41 1 3286 3490 442097244 442097039 2.810000e-31 147.0
9 TraesCS5A01G065500 chr5D 84.694 98 10 3 593 685 75918645 75918742 3.710000e-15 93.5
10 TraesCS5A01G065500 chr2D 89.365 1890 129 39 685 2530 22111199 22109338 0.000000e+00 2311.0
11 TraesCS5A01G065500 chr2D 85.601 1132 130 16 1388 2518 22151180 22152279 0.000000e+00 1157.0
12 TraesCS5A01G065500 chr2D 89.665 358 36 1 1259 1616 22150611 22150967 4.110000e-124 455.0
13 TraesCS5A01G065500 chr2D 83.520 358 55 4 2139 2494 22127933 22128288 7.220000e-87 331.0
14 TraesCS5A01G065500 chr2B 88.745 1546 132 26 981 2516 35124122 35125635 0.000000e+00 1853.0
15 TraesCS5A01G065500 chr2B 81.643 207 36 2 3286 3490 406878360 406878154 1.670000e-38 171.0
16 TraesCS5A01G065500 chr2B 90.000 120 12 0 449 568 793313592 793313473 4.660000e-34 156.0
17 TraesCS5A01G065500 chr7B 89.182 1174 89 19 935 2088 681580551 681579396 0.000000e+00 1430.0
18 TraesCS5A01G065500 chr7B 88.966 725 78 2 2132 2855 681579250 681578527 0.000000e+00 894.0
19 TraesCS5A01G065500 chr7B 90.833 120 11 0 449 568 550684411 550684530 1.000000e-35 161.0
20 TraesCS5A01G065500 chr7B 89.744 117 12 0 449 565 550672359 550672475 2.170000e-32 150.0
21 TraesCS5A01G065500 chr2A 90.484 620 46 5 1440 2059 23967763 23968369 0.000000e+00 806.0
22 TraesCS5A01G065500 chr2A 93.780 418 26 0 1026 1443 23966662 23967079 2.290000e-176 628.0
23 TraesCS5A01G065500 chr2A 84.818 494 67 7 2452 2938 23951128 23950636 1.130000e-134 490.0
24 TraesCS5A01G065500 chr2A 87.302 378 45 3 2150 2527 23968441 23968815 2.490000e-116 429.0
25 TraesCS5A01G065500 chr2A 83.832 167 26 1 3308 3473 5670562 5670728 1.300000e-34 158.0
26 TraesCS5A01G065500 chr2A 88.525 122 13 1 449 570 45179062 45178942 2.810000e-31 147.0
27 TraesCS5A01G065500 chr6B 81.863 204 34 3 3286 3487 684441248 684441046 5.990000e-38 169.0
28 TraesCS5A01G065500 chr3B 82.090 201 32 4 3292 3490 577515074 577515272 5.990000e-38 169.0
29 TraesCS5A01G065500 chr4D 82.723 191 30 3 3282 3471 57485341 57485529 2.150000e-37 167.0
30 TraesCS5A01G065500 chr4D 86.842 152 14 3 449 595 108202867 108202717 7.750000e-37 165.0
31 TraesCS5A01G065500 chr3D 86.207 145 17 1 449 593 346353418 346353559 1.680000e-33 154.0
32 TraesCS5A01G065500 chr3D 85.124 121 15 3 3189 3307 266414756 266414875 1.700000e-23 121.0
33 TraesCS5A01G065500 chr4A 89.256 121 13 0 449 569 169692011 169691891 6.030000e-33 152.0
34 TraesCS5A01G065500 chr6A 89.344 122 10 3 449 569 36144019 36143900 2.170000e-32 150.0
35 TraesCS5A01G065500 chr7D 89.167 120 12 1 449 568 261626753 261626635 7.800000e-32 148.0
36 TraesCS5A01G065500 chr3A 80.402 199 29 7 3293 3490 400099593 400099782 3.630000e-30 143.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G065500 chr5A 71396210 71399699 3489 False 2854.900000 5620 100.0000 1 3490 2 chr5A.!!$F1 3489
1 TraesCS5A01G065500 chr5B 84626064 84629035 2971 False 1411.666667 3733 88.9890 594 3490 3 chr5B.!!$F1 2896
2 TraesCS5A01G065500 chr5D 75918645 75921695 3050 False 1093.625000 3572 89.9965 593 3465 4 chr5D.!!$F1 2872
3 TraesCS5A01G065500 chr2D 22109338 22111199 1861 True 2311.000000 2311 89.3650 685 2530 1 chr2D.!!$R1 1845
4 TraesCS5A01G065500 chr2D 22150611 22152279 1668 False 806.000000 1157 87.6330 1259 2518 2 chr2D.!!$F2 1259
5 TraesCS5A01G065500 chr2B 35124122 35125635 1513 False 1853.000000 1853 88.7450 981 2516 1 chr2B.!!$F1 1535
6 TraesCS5A01G065500 chr7B 681578527 681580551 2024 True 1162.000000 1430 89.0740 935 2855 2 chr7B.!!$R1 1920
7 TraesCS5A01G065500 chr2A 23966662 23968815 2153 False 621.000000 806 90.5220 1026 2527 3 chr2A.!!$F2 1501

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
34 35 0.318441 TGCCCACTCTTGTCTTCGAG 59.682 55.0 0.0 0.0 0.00 4.04 F
35 36 0.390472 GCCCACTCTTGTCTTCGAGG 60.390 60.0 0.0 0.0 0.00 4.63 F
47 48 0.601558 CTTCGAGGAGTTTCGGTCCA 59.398 55.0 0.0 0.0 40.83 4.02 F
1356 1530 0.661552 CGTCCGTGATGGTCTACGAT 59.338 55.0 0.0 0.0 42.54 3.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1827 2720 0.176910 GGACTACTGAGCAAGGAGGC 59.823 60.0 3.89 0.0 45.69 4.70 R
1831 2724 0.179124 GCGAGGACTACTGAGCAAGG 60.179 60.0 0.00 0.0 31.84 3.61 R
1832 2725 0.528017 TGCGAGGACTACTGAGCAAG 59.472 55.0 0.00 0.0 36.77 4.01 R
3190 4294 0.555769 ACTTGTTTGGGGCTGAAGGA 59.444 50.0 0.00 0.0 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.965888 GGATTGCCCACTCTTGTCT 57.034 52.632 0.00 0.00 34.14 3.41
30 31 2.206576 GGATTGCCCACTCTTGTCTT 57.793 50.000 0.00 0.00 34.14 3.01
31 32 2.087646 GGATTGCCCACTCTTGTCTTC 58.912 52.381 0.00 0.00 34.14 2.87
32 33 1.734465 GATTGCCCACTCTTGTCTTCG 59.266 52.381 0.00 0.00 0.00 3.79
33 34 0.756294 TTGCCCACTCTTGTCTTCGA 59.244 50.000 0.00 0.00 0.00 3.71
34 35 0.318441 TGCCCACTCTTGTCTTCGAG 59.682 55.000 0.00 0.00 0.00 4.04
35 36 0.390472 GCCCACTCTTGTCTTCGAGG 60.390 60.000 0.00 0.00 0.00 4.63
36 37 1.257743 CCCACTCTTGTCTTCGAGGA 58.742 55.000 0.00 0.00 0.00 3.71
37 38 1.203523 CCCACTCTTGTCTTCGAGGAG 59.796 57.143 0.00 0.00 0.00 3.69
38 39 1.889829 CCACTCTTGTCTTCGAGGAGT 59.110 52.381 0.00 0.00 0.00 3.85
39 40 2.297597 CCACTCTTGTCTTCGAGGAGTT 59.702 50.000 0.00 0.00 0.00 3.01
40 41 3.243907 CCACTCTTGTCTTCGAGGAGTTT 60.244 47.826 0.00 0.00 0.00 2.66
41 42 3.984633 CACTCTTGTCTTCGAGGAGTTTC 59.015 47.826 0.00 0.00 0.00 2.78
42 43 3.238441 CTCTTGTCTTCGAGGAGTTTCG 58.762 50.000 0.00 0.00 41.79 3.46
43 44 2.030185 TCTTGTCTTCGAGGAGTTTCGG 60.030 50.000 0.00 0.00 40.83 4.30
44 45 1.325355 TGTCTTCGAGGAGTTTCGGT 58.675 50.000 0.00 0.00 40.83 4.69
45 46 1.268899 TGTCTTCGAGGAGTTTCGGTC 59.731 52.381 0.00 0.00 40.83 4.79
46 47 0.886563 TCTTCGAGGAGTTTCGGTCC 59.113 55.000 0.00 0.00 40.83 4.46
47 48 0.601558 CTTCGAGGAGTTTCGGTCCA 59.398 55.000 0.00 0.00 40.83 4.02
480 481 6.926280 ATTTTGTGTTGCATGTATTACGTG 57.074 33.333 11.03 11.03 38.13 4.49
481 482 5.425577 TTTGTGTTGCATGTATTACGTGT 57.574 34.783 15.60 0.00 37.43 4.49
482 483 5.425577 TTGTGTTGCATGTATTACGTGTT 57.574 34.783 15.60 0.00 37.43 3.32
483 484 4.777823 TGTGTTGCATGTATTACGTGTTG 58.222 39.130 15.60 1.08 37.43 3.33
484 485 3.602062 GTGTTGCATGTATTACGTGTTGC 59.398 43.478 15.60 9.78 37.43 4.17
486 487 1.395262 TGCATGTATTACGTGTTGCGG 59.605 47.619 15.60 0.00 46.52 5.69
487 488 1.854434 GCATGTATTACGTGTTGCGGC 60.854 52.381 15.60 0.00 46.52 6.53
488 489 1.011333 ATGTATTACGTGTTGCGGCC 58.989 50.000 0.00 0.00 46.52 6.13
489 490 1.020333 TGTATTACGTGTTGCGGCCC 61.020 55.000 0.00 0.00 46.52 5.80
490 491 1.020333 GTATTACGTGTTGCGGCCCA 61.020 55.000 0.00 0.00 46.52 5.36
491 492 1.020333 TATTACGTGTTGCGGCCCAC 61.020 55.000 0.00 9.17 46.52 4.61
492 493 4.992511 TACGTGTTGCGGCCCACC 62.993 66.667 12.47 0.00 46.52 4.61
497 498 3.712907 GTTGCGGCCCACCTCCTA 61.713 66.667 0.00 0.00 0.00 2.94
498 499 3.399181 TTGCGGCCCACCTCCTAG 61.399 66.667 0.00 0.00 0.00 3.02
499 500 4.715130 TGCGGCCCACCTCCTAGT 62.715 66.667 0.00 0.00 0.00 2.57
500 501 3.851128 GCGGCCCACCTCCTAGTC 61.851 72.222 0.00 0.00 0.00 2.59
501 502 2.363795 CGGCCCACCTCCTAGTCA 60.364 66.667 0.00 0.00 0.00 3.41
502 503 1.762460 CGGCCCACCTCCTAGTCAT 60.762 63.158 0.00 0.00 0.00 3.06
503 504 1.832912 GGCCCACCTCCTAGTCATG 59.167 63.158 0.00 0.00 0.00 3.07
504 505 0.983378 GGCCCACCTCCTAGTCATGT 60.983 60.000 0.00 0.00 0.00 3.21
505 506 1.691482 GGCCCACCTCCTAGTCATGTA 60.691 57.143 0.00 0.00 0.00 2.29
506 507 2.330216 GCCCACCTCCTAGTCATGTAT 58.670 52.381 0.00 0.00 0.00 2.29
507 508 3.507411 GCCCACCTCCTAGTCATGTATA 58.493 50.000 0.00 0.00 0.00 1.47
508 509 3.511934 GCCCACCTCCTAGTCATGTATAG 59.488 52.174 0.00 0.00 0.00 1.31
509 510 4.742012 CCCACCTCCTAGTCATGTATAGT 58.258 47.826 0.00 0.00 0.00 2.12
510 511 5.148502 CCCACCTCCTAGTCATGTATAGTT 58.851 45.833 0.00 0.00 0.00 2.24
511 512 6.312529 CCCACCTCCTAGTCATGTATAGTTA 58.687 44.000 0.00 0.00 0.00 2.24
512 513 6.781014 CCCACCTCCTAGTCATGTATAGTTAA 59.219 42.308 0.00 0.00 0.00 2.01
513 514 7.039644 CCCACCTCCTAGTCATGTATAGTTAAG 60.040 44.444 0.00 0.00 0.00 1.85
514 515 7.724506 CCACCTCCTAGTCATGTATAGTTAAGA 59.275 40.741 0.00 0.00 0.00 2.10
515 516 9.303116 CACCTCCTAGTCATGTATAGTTAAGAT 57.697 37.037 0.00 0.00 0.00 2.40
516 517 9.884814 ACCTCCTAGTCATGTATAGTTAAGATT 57.115 33.333 0.00 0.00 0.00 2.40
551 552 8.981724 ACTGTATTTATATATACGTGCACCAG 57.018 34.615 12.15 9.59 34.42 4.00
552 553 7.544566 ACTGTATTTATATATACGTGCACCAGC 59.455 37.037 12.15 0.00 36.23 4.85
553 554 7.379750 TGTATTTATATATACGTGCACCAGCA 58.620 34.615 12.15 0.00 39.82 4.41
563 564 3.502164 GCACCAGCACCCTATCAAT 57.498 52.632 0.00 0.00 41.58 2.57
564 565 2.638480 GCACCAGCACCCTATCAATA 57.362 50.000 0.00 0.00 41.58 1.90
565 566 2.222027 GCACCAGCACCCTATCAATAC 58.778 52.381 0.00 0.00 41.58 1.89
566 567 2.421388 GCACCAGCACCCTATCAATACA 60.421 50.000 0.00 0.00 41.58 2.29
567 568 3.884895 CACCAGCACCCTATCAATACAA 58.115 45.455 0.00 0.00 0.00 2.41
568 569 3.627577 CACCAGCACCCTATCAATACAAC 59.372 47.826 0.00 0.00 0.00 3.32
569 570 3.265737 ACCAGCACCCTATCAATACAACA 59.734 43.478 0.00 0.00 0.00 3.33
570 571 3.627577 CCAGCACCCTATCAATACAACAC 59.372 47.826 0.00 0.00 0.00 3.32
571 572 3.309682 CAGCACCCTATCAATACAACACG 59.690 47.826 0.00 0.00 0.00 4.49
572 573 3.055385 AGCACCCTATCAATACAACACGT 60.055 43.478 0.00 0.00 0.00 4.49
573 574 4.160814 AGCACCCTATCAATACAACACGTA 59.839 41.667 0.00 0.00 0.00 3.57
574 575 5.054477 GCACCCTATCAATACAACACGTAT 58.946 41.667 0.00 0.00 42.91 3.06
576 577 6.702723 GCACCCTATCAATACAACACGTATTA 59.297 38.462 0.00 0.00 46.88 0.98
577 578 7.306983 GCACCCTATCAATACAACACGTATTAC 60.307 40.741 0.00 0.00 46.88 1.89
578 579 7.707464 CACCCTATCAATACAACACGTATTACA 59.293 37.037 0.00 0.00 46.88 2.41
579 580 8.259411 ACCCTATCAATACAACACGTATTACAA 58.741 33.333 0.00 0.00 46.88 2.41
580 581 9.100554 CCCTATCAATACAACACGTATTACAAA 57.899 33.333 0.00 0.00 46.88 2.83
588 589 7.052565 ACAACACGTATTACAAAACTATCCG 57.947 36.000 0.00 0.00 0.00 4.18
589 590 6.646240 ACAACACGTATTACAAAACTATCCGT 59.354 34.615 0.00 0.00 0.00 4.69
590 591 6.875926 ACACGTATTACAAAACTATCCGTC 57.124 37.500 0.00 0.00 0.00 4.79
591 592 6.624423 ACACGTATTACAAAACTATCCGTCT 58.376 36.000 0.00 0.00 0.00 4.18
611 612 5.488341 GTCTATAGTCCCTTTTGTTGCTGA 58.512 41.667 0.00 0.00 0.00 4.26
614 615 1.615392 AGTCCCTTTTGTTGCTGATGC 59.385 47.619 0.00 0.00 40.20 3.91
615 616 0.968405 TCCCTTTTGTTGCTGATGCC 59.032 50.000 0.00 0.00 38.71 4.40
645 646 4.693283 CGTGCTCCTTCCTATGTATTTCA 58.307 43.478 0.00 0.00 0.00 2.69
646 647 5.116180 CGTGCTCCTTCCTATGTATTTCAA 58.884 41.667 0.00 0.00 0.00 2.69
647 648 5.760253 CGTGCTCCTTCCTATGTATTTCAAT 59.240 40.000 0.00 0.00 0.00 2.57
656 658 7.786178 TCCTATGTATTTCAATTGAACTCGG 57.214 36.000 20.35 13.04 33.13 4.63
658 660 6.765989 CCTATGTATTTCAATTGAACTCGGGA 59.234 38.462 20.35 5.44 33.13 5.14
673 679 2.752354 CTCGGGATTTATGTTTGCCACA 59.248 45.455 0.00 0.00 40.71 4.17
732 822 8.474831 GGGCATTATATTAATTTAAAGCGGGAT 58.525 33.333 15.10 0.00 0.00 3.85
761 853 5.607119 TGCGTCTTCATTCTAAAGAAACC 57.393 39.130 0.00 0.00 37.61 3.27
776 869 2.301870 AGAAACCTAAGTCGTGGCATGA 59.698 45.455 5.03 5.03 0.00 3.07
814 907 4.152402 CACCTTCCGTGTCAACTTGATTAG 59.848 45.833 0.00 0.00 37.73 1.73
815 908 4.202326 ACCTTCCGTGTCAACTTGATTAGT 60.202 41.667 0.00 0.00 39.32 2.24
850 944 3.780294 TGACTTGGTAGGTCATAGCCATT 59.220 43.478 0.00 0.00 38.57 3.16
879 1014 6.385467 AGAGAAGCTTCCCATCACTACTTATT 59.615 38.462 22.81 0.00 0.00 1.40
914 1049 1.680735 CTCTACTCGAATCCTGCAGCT 59.319 52.381 8.66 0.00 0.00 4.24
915 1050 2.100584 CTCTACTCGAATCCTGCAGCTT 59.899 50.000 8.66 3.57 0.00 3.74
926 1061 4.133526 TCCTGCAGCTTCCCTATATACT 57.866 45.455 8.66 0.00 0.00 2.12
946 1091 5.689383 ACTGTACTTATTGCCAACACTTG 57.311 39.130 0.00 0.00 0.00 3.16
951 1096 3.828451 ACTTATTGCCAACACTTGCATCT 59.172 39.130 0.00 0.00 37.33 2.90
963 1108 4.202253 ACACTTGCATCTTACACTCACTCA 60.202 41.667 0.00 0.00 0.00 3.41
969 1114 5.174395 GCATCTTACACTCACTCACTTCAT 58.826 41.667 0.00 0.00 0.00 2.57
976 1121 5.185454 ACACTCACTCACTTCATTGAAACA 58.815 37.500 0.01 0.00 0.00 2.83
977 1122 5.824624 ACACTCACTCACTTCATTGAAACAT 59.175 36.000 0.01 0.00 0.00 2.71
978 1123 6.017605 ACACTCACTCACTTCATTGAAACATC 60.018 38.462 0.01 0.00 0.00 3.06
979 1124 5.471456 ACTCACTCACTTCATTGAAACATCC 59.529 40.000 0.01 0.00 0.00 3.51
1006 1177 2.663602 CGAGAAAACAGAGACATGGACG 59.336 50.000 0.00 0.00 0.00 4.79
1356 1530 0.661552 CGTCCGTGATGGTCTACGAT 59.338 55.000 0.00 0.00 42.54 3.73
1462 2323 3.674050 ATCTACGGGGAGGCGTGGT 62.674 63.158 0.00 0.00 0.00 4.16
1825 2718 1.228063 ATGTCATGGCTGGATCGGC 60.228 57.895 0.00 1.31 34.56 5.54
1826 2719 1.986632 ATGTCATGGCTGGATCGGCA 61.987 55.000 0.00 5.61 43.95 5.69
1827 2720 1.890979 GTCATGGCTGGATCGGCAG 60.891 63.158 10.64 3.56 43.02 4.85
1828 2721 3.285215 CATGGCTGGATCGGCAGC 61.285 66.667 13.76 13.76 43.02 5.25
1832 2725 4.925861 GCTGGATCGGCAGCCTCC 62.926 72.222 10.54 11.46 38.42 4.30
1833 2726 3.160047 CTGGATCGGCAGCCTCCT 61.160 66.667 18.43 0.00 0.00 3.69
1834 2727 2.688666 TGGATCGGCAGCCTCCTT 60.689 61.111 18.43 0.00 0.00 3.36
1835 2728 2.203126 GGATCGGCAGCCTCCTTG 60.203 66.667 10.54 0.00 0.00 3.61
1836 2729 2.899339 GATCGGCAGCCTCCTTGC 60.899 66.667 10.54 0.00 40.80 4.01
1837 2730 3.397613 GATCGGCAGCCTCCTTGCT 62.398 63.158 10.54 0.00 44.00 3.91
1838 2731 3.397613 ATCGGCAGCCTCCTTGCTC 62.398 63.158 10.54 0.00 40.32 4.26
1839 2732 4.399395 CGGCAGCCTCCTTGCTCA 62.399 66.667 10.54 0.00 40.32 4.26
1840 2733 2.438075 GGCAGCCTCCTTGCTCAG 60.438 66.667 3.29 0.00 40.32 3.35
1851 2760 0.528017 CTTGCTCAGTAGTCCTCGCA 59.472 55.000 0.00 0.00 0.00 5.10
1982 2891 3.826157 CGGAAGATATCTCAAGAGCTCCT 59.174 47.826 10.93 0.00 0.00 3.69
2022 2931 2.233431 TGGATTAATTGTGCCTTGGTGC 59.767 45.455 0.00 0.00 0.00 5.01
2059 2968 0.884704 CGCGCATAAGGCCATAGGTT 60.885 55.000 8.75 0.00 40.31 3.50
2146 3199 7.947332 TGCCAATAATATTGCCTACTTTGGATA 59.053 33.333 7.45 0.00 35.49 2.59
2363 3416 2.268796 TCAGGAAGGTGATGGATGGA 57.731 50.000 0.00 0.00 0.00 3.41
2421 3475 1.213926 GGATGAGGATGGCCAAAGAGT 59.786 52.381 10.96 0.00 36.29 3.24
2429 3483 1.702182 TGGCCAAAGAGTCAATGCAA 58.298 45.000 0.61 0.00 0.00 4.08
2438 3492 2.909006 AGAGTCAATGCAAGAAGGAGGA 59.091 45.455 0.00 0.00 0.00 3.71
2441 3495 2.163211 GTCAATGCAAGAAGGAGGAAGC 59.837 50.000 0.00 0.00 0.00 3.86
2459 3513 5.105063 GGAAGCTCTGACAAAAATATTGCC 58.895 41.667 0.00 0.00 0.00 4.52
2542 3599 9.533253 TCAATAGTCATCGCATATTATGTATGG 57.467 33.333 15.31 3.00 0.00 2.74
2648 3705 7.283329 AGTTTTCTTGTCTGAGTGACCTTAAT 58.717 34.615 0.00 0.00 44.75 1.40
2656 3713 8.918202 TGTCTGAGTGACCTTAATACAAATTT 57.082 30.769 0.00 0.00 44.75 1.82
2680 3737 7.461182 TGTTTTCTATTGAGTTACCAATGGG 57.539 36.000 3.55 0.00 37.34 4.00
2699 3756 2.895404 GGGTTGACTATACCTCGGCATA 59.105 50.000 0.00 0.00 35.92 3.14
2707 3764 0.870393 TACCTCGGCATATCGTCGAC 59.130 55.000 5.18 5.18 46.94 4.20
2768 3825 5.394802 CACATAGGTGTAAGCGCTAGATAG 58.605 45.833 12.05 0.00 40.95 2.08
2943 4001 3.317711 ACGTTTTGCCTCATTTGATGTCA 59.682 39.130 0.00 0.00 0.00 3.58
2986 4044 5.296780 GTCACACTCATTCAGACCAGAAAAA 59.703 40.000 0.00 0.00 0.00 1.94
2987 4045 5.528690 TCACACTCATTCAGACCAGAAAAAG 59.471 40.000 0.00 0.00 0.00 2.27
2992 4050 1.981256 TCAGACCAGAAAAAGGGTGC 58.019 50.000 0.00 0.00 37.57 5.01
3183 4287 9.595823 TGATCGGTTCTCCTAAGTTAATTTAAG 57.404 33.333 0.00 0.00 0.00 1.85
3225 4329 1.625818 CAAGTTGGACTGGGCTAGAGT 59.374 52.381 4.33 0.00 0.00 3.24
3260 4364 9.995003 ATAAGATCTAGAAACCAACTCATGATC 57.005 33.333 0.00 0.00 0.00 2.92
3271 4375 0.176449 CTCATGATCCTGGCACGTGA 59.824 55.000 22.23 0.00 0.00 4.35
3365 4531 4.083324 GCTTTAACTGTCTGCAATGCACTA 60.083 41.667 2.72 0.00 33.79 2.74
3374 4540 3.438087 TCTGCAATGCACTAGAGCTTTTC 59.562 43.478 13.47 8.32 33.79 2.29
3375 4541 3.148412 TGCAATGCACTAGAGCTTTTCA 58.852 40.909 13.47 10.67 31.71 2.69
3394 4560 6.726258 TTTCAAGGCATGCGATGTATATAG 57.274 37.500 12.44 0.00 0.00 1.31
3427 4593 5.545658 TCAAACGATGTTGGATAAGCTTC 57.454 39.130 0.00 0.00 0.00 3.86
3473 4639 9.708092 CAACTCTGTCATGTATATCATCATTCT 57.292 33.333 0.00 0.00 34.09 2.40
3479 4645 9.276590 TGTCATGTATATCATCATTCTGAAACC 57.723 33.333 0.00 0.00 34.09 3.27
3484 4650 7.819415 TGTATATCATCATTCTGAAACCGATCC 59.181 37.037 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 2.087646 GAAGACAAGAGTGGGCAATCC 58.912 52.381 0.00 0.00 0.00 3.01
12 13 1.734465 CGAAGACAAGAGTGGGCAATC 59.266 52.381 0.00 0.00 0.00 2.67
13 14 1.347707 TCGAAGACAAGAGTGGGCAAT 59.652 47.619 0.00 0.00 0.00 3.56
14 15 0.756294 TCGAAGACAAGAGTGGGCAA 59.244 50.000 0.00 0.00 0.00 4.52
15 16 0.318441 CTCGAAGACAAGAGTGGGCA 59.682 55.000 0.00 0.00 0.00 5.36
16 17 0.390472 CCTCGAAGACAAGAGTGGGC 60.390 60.000 0.00 0.00 32.88 5.36
17 18 1.203523 CTCCTCGAAGACAAGAGTGGG 59.796 57.143 0.00 0.00 32.88 4.61
18 19 1.889829 ACTCCTCGAAGACAAGAGTGG 59.110 52.381 0.00 0.00 35.72 4.00
19 20 3.651803 AACTCCTCGAAGACAAGAGTG 57.348 47.619 0.00 0.00 36.72 3.51
20 21 3.304794 CGAAACTCCTCGAAGACAAGAGT 60.305 47.826 0.00 0.00 41.44 3.24
21 22 3.238441 CGAAACTCCTCGAAGACAAGAG 58.762 50.000 0.00 0.00 41.44 2.85
22 23 2.030185 CCGAAACTCCTCGAAGACAAGA 60.030 50.000 0.00 0.00 41.44 3.02
23 24 2.288273 ACCGAAACTCCTCGAAGACAAG 60.288 50.000 0.00 0.00 41.44 3.16
24 25 1.684983 ACCGAAACTCCTCGAAGACAA 59.315 47.619 0.00 0.00 41.44 3.18
25 26 1.268899 GACCGAAACTCCTCGAAGACA 59.731 52.381 0.00 0.00 41.44 3.41
26 27 1.402588 GGACCGAAACTCCTCGAAGAC 60.403 57.143 0.00 0.00 41.44 3.01
27 28 0.886563 GGACCGAAACTCCTCGAAGA 59.113 55.000 0.00 0.00 41.44 2.87
28 29 0.601558 TGGACCGAAACTCCTCGAAG 59.398 55.000 0.00 0.00 41.44 3.79
29 30 2.736197 TGGACCGAAACTCCTCGAA 58.264 52.632 0.00 0.00 41.44 3.71
30 31 4.506039 TGGACCGAAACTCCTCGA 57.494 55.556 0.00 0.00 41.44 4.04
454 455 9.709600 CACGTAATACATGCAACACAAAATATA 57.290 29.630 0.00 0.00 0.00 0.86
455 456 8.240682 ACACGTAATACATGCAACACAAAATAT 58.759 29.630 0.00 0.00 0.00 1.28
456 457 7.585867 ACACGTAATACATGCAACACAAAATA 58.414 30.769 0.00 0.00 0.00 1.40
457 458 6.442952 ACACGTAATACATGCAACACAAAAT 58.557 32.000 0.00 0.00 0.00 1.82
458 459 5.822278 ACACGTAATACATGCAACACAAAA 58.178 33.333 0.00 0.00 0.00 2.44
459 460 5.425577 ACACGTAATACATGCAACACAAA 57.574 34.783 0.00 0.00 0.00 2.83
460 461 5.208503 CAACACGTAATACATGCAACACAA 58.791 37.500 0.00 0.00 0.00 3.33
461 462 4.777823 CAACACGTAATACATGCAACACA 58.222 39.130 0.00 0.00 0.00 3.72
462 463 3.602062 GCAACACGTAATACATGCAACAC 59.398 43.478 0.00 0.00 34.10 3.32
463 464 3.665585 CGCAACACGTAATACATGCAACA 60.666 43.478 0.00 0.00 36.87 3.33
464 465 2.837878 CGCAACACGTAATACATGCAAC 59.162 45.455 0.00 0.00 36.87 4.17
465 466 2.159639 CCGCAACACGTAATACATGCAA 60.160 45.455 0.00 0.00 41.42 4.08
466 467 1.395262 CCGCAACACGTAATACATGCA 59.605 47.619 0.00 0.00 41.42 3.96
467 468 1.854434 GCCGCAACACGTAATACATGC 60.854 52.381 0.00 0.00 41.42 4.06
468 469 1.267832 GGCCGCAACACGTAATACATG 60.268 52.381 0.00 0.00 41.42 3.21
469 470 1.011333 GGCCGCAACACGTAATACAT 58.989 50.000 0.00 0.00 41.42 2.29
470 471 1.020333 GGGCCGCAACACGTAATACA 61.020 55.000 0.00 0.00 41.42 2.29
471 472 1.020333 TGGGCCGCAACACGTAATAC 61.020 55.000 0.00 0.00 41.42 1.89
472 473 1.020333 GTGGGCCGCAACACGTAATA 61.020 55.000 13.30 0.00 41.42 0.98
473 474 2.032834 TGGGCCGCAACACGTAAT 59.967 55.556 0.00 0.00 41.42 1.89
474 475 2.973600 GTGGGCCGCAACACGTAA 60.974 61.111 13.30 0.00 41.42 3.18
475 476 4.992511 GGTGGGCCGCAACACGTA 62.993 66.667 20.39 0.00 41.42 3.57
480 481 3.682292 CTAGGAGGTGGGCCGCAAC 62.682 68.421 20.39 11.58 40.50 4.17
481 482 3.399181 CTAGGAGGTGGGCCGCAA 61.399 66.667 20.39 0.00 40.50 4.85
482 483 4.715130 ACTAGGAGGTGGGCCGCA 62.715 66.667 20.39 0.00 40.50 5.69
483 484 3.851128 GACTAGGAGGTGGGCCGC 61.851 72.222 9.05 9.05 40.50 6.53
484 485 1.762460 ATGACTAGGAGGTGGGCCG 60.762 63.158 0.00 0.00 40.50 6.13
485 486 0.983378 ACATGACTAGGAGGTGGGCC 60.983 60.000 0.00 0.00 0.00 5.80
486 487 1.789523 TACATGACTAGGAGGTGGGC 58.210 55.000 0.00 0.00 0.00 5.36
487 488 4.742012 ACTATACATGACTAGGAGGTGGG 58.258 47.826 0.00 0.00 0.00 4.61
488 489 7.724506 TCTTAACTATACATGACTAGGAGGTGG 59.275 40.741 0.00 0.00 0.00 4.61
489 490 8.693120 TCTTAACTATACATGACTAGGAGGTG 57.307 38.462 0.00 0.00 0.00 4.00
490 491 9.884814 AATCTTAACTATACATGACTAGGAGGT 57.115 33.333 0.00 0.00 0.00 3.85
526 527 7.544566 GCTGGTGCACGTATATATAAATACAGT 59.455 37.037 11.45 0.00 39.41 3.55
527 528 7.544217 TGCTGGTGCACGTATATATAAATACAG 59.456 37.037 11.45 8.06 45.31 2.74
528 529 7.379750 TGCTGGTGCACGTATATATAAATACA 58.620 34.615 11.45 0.00 45.31 2.29
529 530 7.821595 TGCTGGTGCACGTATATATAAATAC 57.178 36.000 11.45 0.00 45.31 1.89
545 546 2.222027 GTATTGATAGGGTGCTGGTGC 58.778 52.381 0.00 0.00 40.20 5.01
546 547 3.558931 TGTATTGATAGGGTGCTGGTG 57.441 47.619 0.00 0.00 0.00 4.17
547 548 3.265737 TGTTGTATTGATAGGGTGCTGGT 59.734 43.478 0.00 0.00 0.00 4.00
548 549 3.627577 GTGTTGTATTGATAGGGTGCTGG 59.372 47.826 0.00 0.00 0.00 4.85
549 550 3.309682 CGTGTTGTATTGATAGGGTGCTG 59.690 47.826 0.00 0.00 0.00 4.41
550 551 3.055385 ACGTGTTGTATTGATAGGGTGCT 60.055 43.478 0.00 0.00 0.00 4.40
551 552 3.267483 ACGTGTTGTATTGATAGGGTGC 58.733 45.455 0.00 0.00 0.00 5.01
562 563 8.810427 CGGATAGTTTTGTAATACGTGTTGTAT 58.190 33.333 7.91 0.00 45.81 2.29
563 564 7.812191 ACGGATAGTTTTGTAATACGTGTTGTA 59.188 33.333 7.91 0.00 37.49 2.41
564 565 6.646240 ACGGATAGTTTTGTAATACGTGTTGT 59.354 34.615 7.91 0.00 0.00 3.32
565 566 7.052565 ACGGATAGTTTTGTAATACGTGTTG 57.947 36.000 7.91 0.00 0.00 3.33
566 567 7.092716 AGACGGATAGTTTTGTAATACGTGTT 58.907 34.615 2.29 2.29 31.72 3.32
567 568 6.624423 AGACGGATAGTTTTGTAATACGTGT 58.376 36.000 0.00 0.00 31.72 4.49
568 569 8.792831 ATAGACGGATAGTTTTGTAATACGTG 57.207 34.615 0.00 0.00 31.72 4.49
573 574 8.583296 GGGACTATAGACGGATAGTTTTGTAAT 58.417 37.037 6.78 0.00 41.68 1.89
574 575 7.781693 AGGGACTATAGACGGATAGTTTTGTAA 59.218 37.037 6.78 0.00 41.68 2.41
575 576 7.293073 AGGGACTATAGACGGATAGTTTTGTA 58.707 38.462 6.78 0.00 41.68 2.41
576 577 6.134754 AGGGACTATAGACGGATAGTTTTGT 58.865 40.000 6.78 0.00 41.68 2.83
577 578 6.651975 AGGGACTATAGACGGATAGTTTTG 57.348 41.667 6.78 0.00 41.68 2.44
578 579 7.672122 AAAGGGACTATAGACGGATAGTTTT 57.328 36.000 6.78 3.82 41.68 2.43
579 580 7.125356 ACAAAAGGGACTATAGACGGATAGTTT 59.875 37.037 6.78 0.00 41.68 2.66
580 581 6.610425 ACAAAAGGGACTATAGACGGATAGTT 59.390 38.462 6.78 0.00 41.68 2.24
581 582 6.134754 ACAAAAGGGACTATAGACGGATAGT 58.865 40.000 6.78 6.61 43.79 2.12
582 583 6.651975 ACAAAAGGGACTATAGACGGATAG 57.348 41.667 6.78 0.00 38.49 2.08
583 584 6.684613 GCAACAAAAGGGACTATAGACGGATA 60.685 42.308 6.78 0.00 38.49 2.59
584 585 5.671493 CAACAAAAGGGACTATAGACGGAT 58.329 41.667 6.78 0.00 38.49 4.18
585 586 4.622220 GCAACAAAAGGGACTATAGACGGA 60.622 45.833 6.78 0.00 38.49 4.69
586 587 3.621715 GCAACAAAAGGGACTATAGACGG 59.378 47.826 6.78 0.00 38.49 4.79
587 588 4.330074 CAGCAACAAAAGGGACTATAGACG 59.670 45.833 6.78 0.00 38.49 4.18
588 589 5.488341 TCAGCAACAAAAGGGACTATAGAC 58.512 41.667 6.78 0.00 38.49 2.59
589 590 5.755409 TCAGCAACAAAAGGGACTATAGA 57.245 39.130 6.78 0.00 38.49 1.98
590 591 5.220931 GCATCAGCAACAAAAGGGACTATAG 60.221 44.000 0.00 0.00 38.37 1.31
591 592 4.640201 GCATCAGCAACAAAAGGGACTATA 59.360 41.667 0.00 0.00 38.37 1.31
645 646 6.099341 GCAAACATAAATCCCGAGTTCAATT 58.901 36.000 0.00 0.00 0.00 2.32
646 647 5.394115 GGCAAACATAAATCCCGAGTTCAAT 60.394 40.000 0.00 0.00 0.00 2.57
647 648 4.082463 GGCAAACATAAATCCCGAGTTCAA 60.082 41.667 0.00 0.00 0.00 2.69
673 679 5.577164 GCGAGTAAGTCACATAGTTCACAAT 59.423 40.000 0.00 0.00 0.00 2.71
728 818 0.729690 GAAGACGCAAGAAGCATCCC 59.270 55.000 0.00 0.00 46.13 3.85
732 822 2.771089 AGAATGAAGACGCAAGAAGCA 58.229 42.857 0.00 0.00 46.13 3.91
761 853 2.672961 TTCCTCATGCCACGACTTAG 57.327 50.000 0.00 0.00 0.00 2.18
776 869 3.307762 GGAAGGTGCTCATGTAGTTTCCT 60.308 47.826 0.00 0.00 32.20 3.36
814 907 3.311596 ACCAAGTCACTTTCACGCTTAAC 59.688 43.478 0.00 0.00 0.00 2.01
815 908 3.537580 ACCAAGTCACTTTCACGCTTAA 58.462 40.909 0.00 0.00 0.00 1.85
850 944 2.499289 GTGATGGGAAGCTTCTCTGAGA 59.501 50.000 26.24 7.23 0.00 3.27
879 1014 0.978151 TAGAGTGGCGGGCAAGTAAA 59.022 50.000 5.57 0.00 0.00 2.01
914 1049 8.730093 TGGCAATAAGTACAGTATATAGGGAA 57.270 34.615 0.00 0.00 0.00 3.97
915 1050 8.591072 GTTGGCAATAAGTACAGTATATAGGGA 58.409 37.037 1.92 0.00 0.00 4.20
926 1061 3.885901 TGCAAGTGTTGGCAATAAGTACA 59.114 39.130 1.92 0.00 37.03 2.90
946 1091 4.560128 TGAAGTGAGTGAGTGTAAGATGC 58.440 43.478 0.00 0.00 0.00 3.91
951 1096 6.821160 TGTTTCAATGAAGTGAGTGAGTGTAA 59.179 34.615 0.00 0.00 0.00 2.41
963 1108 4.559300 CGGCTTTGGATGTTTCAATGAAGT 60.559 41.667 0.00 0.00 0.00 3.01
969 1114 2.857483 TCTCGGCTTTGGATGTTTCAA 58.143 42.857 0.00 0.00 0.00 2.69
976 1121 3.077359 CTCTGTTTTCTCGGCTTTGGAT 58.923 45.455 0.00 0.00 0.00 3.41
977 1122 2.104111 TCTCTGTTTTCTCGGCTTTGGA 59.896 45.455 0.00 0.00 0.00 3.53
978 1123 2.224314 GTCTCTGTTTTCTCGGCTTTGG 59.776 50.000 0.00 0.00 0.00 3.28
979 1124 2.872245 TGTCTCTGTTTTCTCGGCTTTG 59.128 45.455 0.00 0.00 0.00 2.77
1575 2436 1.273438 ACGTCCAGGTACTTGGGGTAT 60.273 52.381 22.71 4.88 34.60 2.73
1810 2671 2.507452 CTGCCGATCCAGCCATGA 59.493 61.111 0.00 0.00 0.00 3.07
1825 2718 0.901124 ACTACTGAGCAAGGAGGCTG 59.099 55.000 0.00 0.00 45.99 4.85
1826 2719 1.190643 GACTACTGAGCAAGGAGGCT 58.809 55.000 3.89 0.00 42.55 4.58
1827 2720 0.176910 GGACTACTGAGCAAGGAGGC 59.823 60.000 3.89 0.00 45.69 4.70
1828 2721 1.754226 GAGGACTACTGAGCAAGGAGG 59.246 57.143 3.89 0.00 41.85 4.30
1829 2722 1.403679 CGAGGACTACTGAGCAAGGAG 59.596 57.143 0.00 0.00 43.41 3.69
1830 2723 1.464734 CGAGGACTACTGAGCAAGGA 58.535 55.000 0.00 0.00 0.00 3.36
1831 2724 0.179124 GCGAGGACTACTGAGCAAGG 60.179 60.000 0.00 0.00 31.84 3.61
1832 2725 0.528017 TGCGAGGACTACTGAGCAAG 59.472 55.000 0.00 0.00 36.77 4.01
1833 2726 1.135139 GATGCGAGGACTACTGAGCAA 59.865 52.381 0.00 0.00 41.02 3.91
1834 2727 0.741326 GATGCGAGGACTACTGAGCA 59.259 55.000 0.00 0.00 41.61 4.26
1835 2728 1.028905 AGATGCGAGGACTACTGAGC 58.971 55.000 0.00 0.00 0.00 4.26
1836 2729 4.320861 CCATAAGATGCGAGGACTACTGAG 60.321 50.000 0.00 0.00 0.00 3.35
1837 2730 3.570125 CCATAAGATGCGAGGACTACTGA 59.430 47.826 0.00 0.00 0.00 3.41
1838 2731 3.305676 CCCATAAGATGCGAGGACTACTG 60.306 52.174 0.00 0.00 0.00 2.74
1839 2732 2.894126 CCCATAAGATGCGAGGACTACT 59.106 50.000 0.00 0.00 0.00 2.57
1840 2733 2.891580 TCCCATAAGATGCGAGGACTAC 59.108 50.000 0.00 0.00 0.00 2.73
1851 2760 2.628657 GCTGTAGACCGTCCCATAAGAT 59.371 50.000 0.00 0.00 0.00 2.40
1982 2891 0.539438 ATTTTCCTCGCACCTGCCAA 60.539 50.000 0.00 0.00 37.91 4.52
1993 2902 6.225981 AGGCACAATTAATCCATTTTCCTC 57.774 37.500 0.00 0.00 0.00 3.71
2022 2931 1.301293 GAGAACCTCAAGCTGGGGG 59.699 63.158 5.06 5.06 44.22 5.40
2384 3437 6.071672 TCCTCATCCATTTTGTCGCATTTTTA 60.072 34.615 0.00 0.00 0.00 1.52
2421 3475 2.040813 AGCTTCCTCCTTCTTGCATTGA 59.959 45.455 0.00 0.00 0.00 2.57
2429 3483 2.317371 TGTCAGAGCTTCCTCCTTCT 57.683 50.000 0.00 0.00 38.96 2.85
2438 3492 4.458989 TCGGCAATATTTTTGTCAGAGCTT 59.541 37.500 0.00 0.00 0.00 3.74
2441 3495 7.669098 CAAATTCGGCAATATTTTTGTCAGAG 58.331 34.615 0.00 0.00 0.00 3.35
2459 3513 6.655062 TGATAAATACTTAGCCGCAAATTCG 58.345 36.000 0.00 0.00 0.00 3.34
2565 3622 5.466728 TGACATTGCTCTGTAAAGTGAAGAC 59.533 40.000 0.00 0.00 0.00 3.01
2579 3636 2.245096 GTGAATGCGTTGACATTGCTC 58.755 47.619 3.15 0.00 40.31 4.26
2634 3691 9.965824 AAACAAATTTGTATTAAGGTCACTCAG 57.034 29.630 23.53 0.00 41.31 3.35
2656 3713 7.007723 ACCCATTGGTAACTCAATAGAAAACA 58.992 34.615 1.20 0.00 45.45 2.83
2680 3737 4.082895 ACGATATGCCGAGGTATAGTCAAC 60.083 45.833 6.14 0.00 0.00 3.18
2699 3756 1.401931 CCACAACCTTACGTCGACGAT 60.402 52.381 41.52 27.15 43.02 3.73
2707 3764 7.095607 GCATATCTAATTCTCCACAACCTTACG 60.096 40.741 0.00 0.00 0.00 3.18
2768 3825 3.118629 TGGTGGTAGCAAGTGATCATCTC 60.119 47.826 0.00 0.00 0.00 2.75
2890 3948 6.541934 ACTTCTTAAATCGGGTAACTAGCT 57.458 37.500 0.00 0.00 0.00 3.32
2891 3949 7.606858 AAACTTCTTAAATCGGGTAACTAGC 57.393 36.000 0.00 0.00 0.00 3.42
2922 3980 3.899734 TGACATCAAATGAGGCAAAACG 58.100 40.909 0.00 0.00 0.00 3.60
2943 4001 4.407296 GTGACAATGGTCTTAGGAGGATCT 59.593 45.833 1.02 0.00 44.61 2.75
2986 4044 6.018433 AGTTGGAGAATATAATTGCACCCT 57.982 37.500 0.00 0.00 0.00 4.34
2987 4045 6.064717 AGAGTTGGAGAATATAATTGCACCC 58.935 40.000 0.00 0.00 0.00 4.61
3183 4287 1.923356 TGGGGCTGAAGGATTTGTTC 58.077 50.000 0.00 0.00 0.00 3.18
3190 4294 0.555769 ACTTGTTTGGGGCTGAAGGA 59.444 50.000 0.00 0.00 0.00 3.36
3214 4318 3.713826 TGGGTTTTAACTCTAGCCCAG 57.286 47.619 0.00 0.00 40.82 4.45
3216 4320 5.997843 TCTTATGGGTTTTAACTCTAGCCC 58.002 41.667 0.00 0.00 36.73 5.19
3260 4364 1.933853 GTTAGCTATTCACGTGCCAGG 59.066 52.381 11.67 2.41 0.00 4.45
3271 4375 3.197116 AGGGTGCGTGTAAGTTAGCTATT 59.803 43.478 0.00 0.00 0.00 1.73
3365 4531 0.524862 CGCATGCCTTGAAAAGCTCT 59.475 50.000 13.15 0.00 44.44 4.09
3374 4540 3.310774 GGCTATATACATCGCATGCCTTG 59.689 47.826 13.15 12.36 36.52 3.61
3375 4541 3.055167 TGGCTATATACATCGCATGCCTT 60.055 43.478 13.15 0.00 39.77 4.35
3394 4560 4.370364 ACATCGTTTGATATGGTTTGGC 57.630 40.909 0.00 0.00 32.18 4.52
3427 4593 1.936547 GGGCTAGCTTCGATTGAACAG 59.063 52.381 15.72 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.