Multiple sequence alignment - TraesCS5A01G064000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G064000 chr5A 100.000 3495 0 0 1 3495 69233271 69229777 0.000000e+00 6455.0
1 TraesCS5A01G064000 chr3A 99.208 2778 16 1 724 3495 23447067 23449844 0.000000e+00 5003.0
2 TraesCS5A01G064000 chr3A 98.487 2776 27 1 720 3495 57277801 57275041 0.000000e+00 4879.0
3 TraesCS5A01G064000 chr4A 99.206 2772 22 0 724 3495 644772685 644769914 0.000000e+00 4998.0
4 TraesCS5A01G064000 chr1A 98.780 2788 18 2 723 3495 521287690 521284904 0.000000e+00 4946.0
5 TraesCS5A01G064000 chr1A 98.636 2785 21 3 727 3495 500074427 500071644 0.000000e+00 4916.0
6 TraesCS5A01G064000 chr7B 98.737 2772 20 1 724 3495 122624256 122627012 0.000000e+00 4911.0
7 TraesCS5A01G064000 chr7B 98.379 2467 23 3 709 3175 476795165 476792716 0.000000e+00 4318.0
8 TraesCS5A01G064000 chr2B 98.487 2776 22 7 720 3495 165276626 165279381 0.000000e+00 4876.0
9 TraesCS5A01G064000 chr5B 98.485 2772 27 5 724 3495 339081373 339084129 0.000000e+00 4872.0
10 TraesCS5A01G064000 chr5B 88.235 255 25 4 442 692 78216511 78216764 2.040000e-77 300.0
11 TraesCS5A01G064000 chr6A 98.997 2392 24 0 724 3115 97398564 97396173 0.000000e+00 4285.0
12 TraesCS5A01G064000 chr4B 97.644 2037 15 2 1477 3495 451450953 451448932 0.000000e+00 3465.0
13 TraesCS5A01G064000 chr5D 86.580 462 45 13 270 723 74148930 74148478 8.710000e-136 494.0
14 TraesCS5A01G064000 chr3D 75.966 233 40 10 1 232 413680282 413680065 4.770000e-19 106.0
15 TraesCS5A01G064000 chr3B 95.122 41 2 0 185 225 9061439 9061479 8.100000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G064000 chr5A 69229777 69233271 3494 True 6455 6455 100.000 1 3495 1 chr5A.!!$R1 3494
1 TraesCS5A01G064000 chr3A 23447067 23449844 2777 False 5003 5003 99.208 724 3495 1 chr3A.!!$F1 2771
2 TraesCS5A01G064000 chr3A 57275041 57277801 2760 True 4879 4879 98.487 720 3495 1 chr3A.!!$R1 2775
3 TraesCS5A01G064000 chr4A 644769914 644772685 2771 True 4998 4998 99.206 724 3495 1 chr4A.!!$R1 2771
4 TraesCS5A01G064000 chr1A 521284904 521287690 2786 True 4946 4946 98.780 723 3495 1 chr1A.!!$R2 2772
5 TraesCS5A01G064000 chr1A 500071644 500074427 2783 True 4916 4916 98.636 727 3495 1 chr1A.!!$R1 2768
6 TraesCS5A01G064000 chr7B 122624256 122627012 2756 False 4911 4911 98.737 724 3495 1 chr7B.!!$F1 2771
7 TraesCS5A01G064000 chr7B 476792716 476795165 2449 True 4318 4318 98.379 709 3175 1 chr7B.!!$R1 2466
8 TraesCS5A01G064000 chr2B 165276626 165279381 2755 False 4876 4876 98.487 720 3495 1 chr2B.!!$F1 2775
9 TraesCS5A01G064000 chr5B 339081373 339084129 2756 False 4872 4872 98.485 724 3495 1 chr5B.!!$F2 2771
10 TraesCS5A01G064000 chr6A 97396173 97398564 2391 True 4285 4285 98.997 724 3115 1 chr6A.!!$R1 2391
11 TraesCS5A01G064000 chr4B 451448932 451450953 2021 True 3465 3465 97.644 1477 3495 1 chr4B.!!$R1 2018

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
549 550 0.095935 CTTGATGCAAAGGTCGAGCG 59.904 55.0 9.28 0.0 0.0 5.03 F
559 560 0.106619 AGGTCGAGCGTTATCCTCCT 60.107 55.0 9.28 0.0 0.0 3.69 F
650 651 0.107066 TAGGTGGTGATCGAGCGGTA 60.107 55.0 0.00 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1671 1698 1.269206 ACAAAATCACTGCAGTTGCCG 60.269 47.619 18.94 6.04 41.18 5.69 R
2251 2278 3.718723 ACTCTAGCTTCTCTTGGGTGAT 58.281 45.455 0.00 0.00 30.02 3.06 R
2818 2845 4.666512 AGCCAAGTTGTAATGGATCAAGT 58.333 39.130 1.45 0.00 39.12 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 4.717313 GCCAACCACCTCGGGGAC 62.717 72.222 9.33 0.00 40.22 4.46
42 43 3.221222 GGGACCACCAGGATCGAG 58.779 66.667 0.00 0.00 39.85 4.04
43 44 2.501610 GGACCACCAGGATCGAGC 59.498 66.667 0.00 0.00 38.69 5.03
44 45 2.105128 GACCACCAGGATCGAGCG 59.895 66.667 0.00 0.00 38.69 5.03
45 46 3.432051 GACCACCAGGATCGAGCGG 62.432 68.421 0.00 0.00 38.69 5.52
46 47 3.147595 CCACCAGGATCGAGCGGA 61.148 66.667 1.40 0.00 36.89 5.54
47 48 2.415010 CACCAGGATCGAGCGGAG 59.585 66.667 1.40 0.00 0.00 4.63
70 71 4.214327 GGCGAGGGCGAGGAGAAG 62.214 72.222 0.00 0.00 41.24 2.85
71 72 4.882396 GCGAGGGCGAGGAGAAGC 62.882 72.222 0.00 0.00 40.82 3.86
79 80 3.157949 GAGGAGAAGCCGGGGGAG 61.158 72.222 2.18 0.00 43.43 4.30
80 81 4.806339 AGGAGAAGCCGGGGGAGG 62.806 72.222 2.18 0.00 43.43 4.30
138 139 4.867599 GCGACCCGGTCCGACATC 62.868 72.222 14.39 6.09 0.00 3.06
139 140 4.547905 CGACCCGGTCCGACATCG 62.548 72.222 14.39 14.47 39.44 3.84
140 141 3.446570 GACCCGGTCCGACATCGT 61.447 66.667 14.39 0.01 37.74 3.73
141 142 3.695022 GACCCGGTCCGACATCGTG 62.695 68.421 14.39 0.00 37.74 4.35
142 143 4.508128 CCCGGTCCGACATCGTGG 62.508 72.222 14.39 0.00 37.74 4.94
143 144 3.445687 CCGGTCCGACATCGTGGA 61.446 66.667 14.39 0.00 37.74 4.02
146 147 2.879462 GTCCGACATCGTGGACGC 60.879 66.667 0.00 0.00 44.68 5.19
147 148 4.124351 TCCGACATCGTGGACGCC 62.124 66.667 0.00 0.00 39.60 5.68
166 167 4.767255 CAGCCGGAGTGGACAGCC 62.767 72.222 5.05 0.00 42.00 4.85
230 231 3.535962 GCGCAGAGGAGGAGGGAG 61.536 72.222 0.30 0.00 0.00 4.30
231 232 2.837291 CGCAGAGGAGGAGGGAGG 60.837 72.222 0.00 0.00 0.00 4.30
232 233 2.693017 GCAGAGGAGGAGGGAGGA 59.307 66.667 0.00 0.00 0.00 3.71
233 234 1.002274 GCAGAGGAGGAGGGAGGAA 59.998 63.158 0.00 0.00 0.00 3.36
234 235 1.048160 GCAGAGGAGGAGGGAGGAAG 61.048 65.000 0.00 0.00 0.00 3.46
235 236 1.048160 CAGAGGAGGAGGGAGGAAGC 61.048 65.000 0.00 0.00 0.00 3.86
236 237 2.042435 AGGAGGAGGGAGGAAGCG 60.042 66.667 0.00 0.00 0.00 4.68
237 238 3.855853 GGAGGAGGGAGGAAGCGC 61.856 72.222 0.00 0.00 0.00 5.92
238 239 3.077556 GAGGAGGGAGGAAGCGCA 61.078 66.667 11.47 0.00 0.00 6.09
239 240 3.378399 GAGGAGGGAGGAAGCGCAC 62.378 68.421 11.47 2.54 0.00 5.34
240 241 4.821589 GGAGGGAGGAAGCGCACG 62.822 72.222 11.47 0.00 0.00 5.34
251 252 2.740826 GCGCACGCTCAGGGTTAA 60.741 61.111 7.96 0.00 38.26 2.01
252 253 2.322081 GCGCACGCTCAGGGTTAAA 61.322 57.895 7.96 0.00 38.26 1.52
253 254 1.495951 CGCACGCTCAGGGTTAAAC 59.504 57.895 0.00 0.00 0.00 2.01
254 255 1.873863 GCACGCTCAGGGTTAAACC 59.126 57.895 0.00 0.00 37.60 3.27
255 256 0.605589 GCACGCTCAGGGTTAAACCT 60.606 55.000 6.12 6.12 43.08 3.50
263 264 2.951229 AGGGTTAAACCTGTGAGTGG 57.049 50.000 12.48 0.00 40.04 4.00
264 265 1.202891 AGGGTTAAACCTGTGAGTGGC 60.203 52.381 12.48 0.00 40.04 5.01
265 266 1.202891 GGGTTAAACCTGTGAGTGGCT 60.203 52.381 0.96 0.00 38.64 4.75
266 267 1.880027 GGTTAAACCTGTGAGTGGCTG 59.120 52.381 0.00 0.00 34.73 4.85
267 268 2.486548 GGTTAAACCTGTGAGTGGCTGA 60.487 50.000 0.00 0.00 34.73 4.26
268 269 3.211045 GTTAAACCTGTGAGTGGCTGAA 58.789 45.455 0.00 0.00 0.00 3.02
269 270 2.435372 AAACCTGTGAGTGGCTGAAA 57.565 45.000 0.00 0.00 0.00 2.69
270 271 2.435372 AACCTGTGAGTGGCTGAAAA 57.565 45.000 0.00 0.00 0.00 2.29
271 272 2.664402 ACCTGTGAGTGGCTGAAAAT 57.336 45.000 0.00 0.00 0.00 1.82
272 273 2.949447 ACCTGTGAGTGGCTGAAAATT 58.051 42.857 0.00 0.00 0.00 1.82
273 274 4.098914 ACCTGTGAGTGGCTGAAAATTA 57.901 40.909 0.00 0.00 0.00 1.40
274 275 4.666512 ACCTGTGAGTGGCTGAAAATTAT 58.333 39.130 0.00 0.00 0.00 1.28
275 276 5.815581 ACCTGTGAGTGGCTGAAAATTATA 58.184 37.500 0.00 0.00 0.00 0.98
276 277 6.245408 ACCTGTGAGTGGCTGAAAATTATAA 58.755 36.000 0.00 0.00 0.00 0.98
277 278 6.891908 ACCTGTGAGTGGCTGAAAATTATAAT 59.108 34.615 0.00 0.00 0.00 1.28
278 279 7.397192 ACCTGTGAGTGGCTGAAAATTATAATT 59.603 33.333 4.81 4.81 0.00 1.40
279 280 8.902806 CCTGTGAGTGGCTGAAAATTATAATTA 58.097 33.333 11.07 0.00 0.00 1.40
280 281 9.941664 CTGTGAGTGGCTGAAAATTATAATTAG 57.058 33.333 11.07 6.61 0.00 1.73
281 282 9.461312 TGTGAGTGGCTGAAAATTATAATTAGT 57.539 29.630 11.07 2.90 0.00 2.24
305 306 9.541884 AGTATTCTTCTCTACCTTCTCTCTTTT 57.458 33.333 0.00 0.00 0.00 2.27
308 309 7.234661 TCTTCTCTACCTTCTCTCTTTTTCC 57.765 40.000 0.00 0.00 0.00 3.13
309 310 5.646577 TCTCTACCTTCTCTCTTTTTCCG 57.353 43.478 0.00 0.00 0.00 4.30
310 311 5.078256 TCTCTACCTTCTCTCTTTTTCCGT 58.922 41.667 0.00 0.00 0.00 4.69
311 312 5.183522 TCTCTACCTTCTCTCTTTTTCCGTC 59.816 44.000 0.00 0.00 0.00 4.79
312 313 5.078256 TCTACCTTCTCTCTTTTTCCGTCT 58.922 41.667 0.00 0.00 0.00 4.18
313 314 4.691326 ACCTTCTCTCTTTTTCCGTCTT 57.309 40.909 0.00 0.00 0.00 3.01
314 315 4.633175 ACCTTCTCTCTTTTTCCGTCTTC 58.367 43.478 0.00 0.00 0.00 2.87
315 316 4.101119 ACCTTCTCTCTTTTTCCGTCTTCA 59.899 41.667 0.00 0.00 0.00 3.02
316 317 5.221742 ACCTTCTCTCTTTTTCCGTCTTCAT 60.222 40.000 0.00 0.00 0.00 2.57
317 318 6.014499 ACCTTCTCTCTTTTTCCGTCTTCATA 60.014 38.462 0.00 0.00 0.00 2.15
318 319 7.044798 CCTTCTCTCTTTTTCCGTCTTCATAT 58.955 38.462 0.00 0.00 0.00 1.78
319 320 7.223777 CCTTCTCTCTTTTTCCGTCTTCATATC 59.776 40.741 0.00 0.00 0.00 1.63
320 321 7.411486 TCTCTCTTTTTCCGTCTTCATATCT 57.589 36.000 0.00 0.00 0.00 1.98
321 322 8.521170 TCTCTCTTTTTCCGTCTTCATATCTA 57.479 34.615 0.00 0.00 0.00 1.98
322 323 9.137459 TCTCTCTTTTTCCGTCTTCATATCTAT 57.863 33.333 0.00 0.00 0.00 1.98
323 324 9.405587 CTCTCTTTTTCCGTCTTCATATCTATC 57.594 37.037 0.00 0.00 0.00 2.08
324 325 9.137459 TCTCTTTTTCCGTCTTCATATCTATCT 57.863 33.333 0.00 0.00 0.00 1.98
325 326 9.190858 CTCTTTTTCCGTCTTCATATCTATCTG 57.809 37.037 0.00 0.00 0.00 2.90
326 327 8.696374 TCTTTTTCCGTCTTCATATCTATCTGT 58.304 33.333 0.00 0.00 0.00 3.41
327 328 9.967346 CTTTTTCCGTCTTCATATCTATCTGTA 57.033 33.333 0.00 0.00 0.00 2.74
331 332 9.914131 TTCCGTCTTCATATCTATCTGTATTTG 57.086 33.333 0.00 0.00 0.00 2.32
332 333 8.029522 TCCGTCTTCATATCTATCTGTATTTGC 58.970 37.037 0.00 0.00 0.00 3.68
333 334 7.276658 CCGTCTTCATATCTATCTGTATTTGCC 59.723 40.741 0.00 0.00 0.00 4.52
334 335 8.031864 CGTCTTCATATCTATCTGTATTTGCCT 58.968 37.037 0.00 0.00 0.00 4.75
343 344 8.657387 TCTATCTGTATTTGCCTATAGAAGCT 57.343 34.615 0.00 0.00 0.00 3.74
344 345 9.755122 TCTATCTGTATTTGCCTATAGAAGCTA 57.245 33.333 0.00 0.00 0.00 3.32
347 348 9.664332 ATCTGTATTTGCCTATAGAAGCTAATG 57.336 33.333 15.56 5.14 35.66 1.90
348 349 8.651389 TCTGTATTTGCCTATAGAAGCTAATGT 58.349 33.333 15.56 1.27 35.66 2.71
349 350 9.929180 CTGTATTTGCCTATAGAAGCTAATGTA 57.071 33.333 15.56 7.70 35.66 2.29
354 355 8.948631 TTGCCTATAGAAGCTAATGTATATGC 57.051 34.615 0.00 0.00 0.00 3.14
355 356 8.078060 TGCCTATAGAAGCTAATGTATATGCA 57.922 34.615 0.00 7.84 33.46 3.96
356 357 8.539544 TGCCTATAGAAGCTAATGTATATGCAA 58.460 33.333 0.00 0.00 33.18 4.08
357 358 9.039870 GCCTATAGAAGCTAATGTATATGCAAG 57.960 37.037 0.00 0.00 29.23 4.01
358 359 9.539825 CCTATAGAAGCTAATGTATATGCAAGG 57.460 37.037 0.00 0.00 0.00 3.61
359 360 7.856145 ATAGAAGCTAATGTATATGCAAGGC 57.144 36.000 0.00 3.10 0.00 4.35
360 361 5.874093 AGAAGCTAATGTATATGCAAGGCT 58.126 37.500 10.79 10.79 0.00 4.58
361 362 5.936956 AGAAGCTAATGTATATGCAAGGCTC 59.063 40.000 14.78 10.45 0.00 4.70
362 363 5.495926 AGCTAATGTATATGCAAGGCTCT 57.504 39.130 10.79 0.00 0.00 4.09
363 364 5.874093 AGCTAATGTATATGCAAGGCTCTT 58.126 37.500 10.79 0.00 0.00 2.85
364 365 5.936956 AGCTAATGTATATGCAAGGCTCTTC 59.063 40.000 10.79 0.00 0.00 2.87
365 366 5.123027 GCTAATGTATATGCAAGGCTCTTCC 59.877 44.000 0.00 0.00 0.00 3.46
383 384 6.704056 TCTTCCTTAAGAGTTGATTCCCTT 57.296 37.500 3.36 0.00 36.80 3.95
384 385 7.091533 TCTTCCTTAAGAGTTGATTCCCTTT 57.908 36.000 3.36 0.00 36.80 3.11
385 386 8.214721 TCTTCCTTAAGAGTTGATTCCCTTTA 57.785 34.615 3.36 0.00 36.80 1.85
386 387 8.836735 TCTTCCTTAAGAGTTGATTCCCTTTAT 58.163 33.333 3.36 0.00 36.80 1.40
387 388 9.467796 CTTCCTTAAGAGTTGATTCCCTTTATT 57.532 33.333 3.36 0.00 34.37 1.40
414 415 8.555166 TTATTTTTCATGTCTTTCACGTTCAC 57.445 30.769 0.00 0.00 0.00 3.18
415 416 5.553290 TTTTCATGTCTTTCACGTTCACA 57.447 34.783 0.00 0.00 0.00 3.58
416 417 5.749596 TTTCATGTCTTTCACGTTCACAT 57.250 34.783 0.00 0.00 0.00 3.21
417 418 6.852858 TTTCATGTCTTTCACGTTCACATA 57.147 33.333 0.00 0.00 0.00 2.29
418 419 6.466308 TTCATGTCTTTCACGTTCACATAG 57.534 37.500 0.00 0.00 0.00 2.23
419 420 5.778862 TCATGTCTTTCACGTTCACATAGA 58.221 37.500 0.00 0.00 0.00 1.98
420 421 5.633601 TCATGTCTTTCACGTTCACATAGAC 59.366 40.000 0.00 0.00 0.00 2.59
421 422 4.939271 TGTCTTTCACGTTCACATAGACA 58.061 39.130 0.00 0.00 38.44 3.41
422 423 5.353111 TGTCTTTCACGTTCACATAGACAA 58.647 37.500 0.00 0.00 37.99 3.18
423 424 5.813157 TGTCTTTCACGTTCACATAGACAAA 59.187 36.000 0.00 0.00 37.99 2.83
424 425 6.314152 TGTCTTTCACGTTCACATAGACAAAA 59.686 34.615 0.00 0.00 37.99 2.44
425 426 7.148390 TGTCTTTCACGTTCACATAGACAAAAA 60.148 33.333 0.00 0.00 37.99 1.94
426 427 7.373441 GTCTTTCACGTTCACATAGACAAAAAG 59.627 37.037 0.00 0.00 32.79 2.27
427 428 6.912203 TTCACGTTCACATAGACAAAAAGA 57.088 33.333 0.00 0.00 0.00 2.52
428 429 6.281848 TCACGTTCACATAGACAAAAAGAC 57.718 37.500 0.00 0.00 0.00 3.01
429 430 5.813157 TCACGTTCACATAGACAAAAAGACA 59.187 36.000 0.00 0.00 0.00 3.41
430 431 6.481976 TCACGTTCACATAGACAAAAAGACAT 59.518 34.615 0.00 0.00 0.00 3.06
431 432 6.574832 CACGTTCACATAGACAAAAAGACATG 59.425 38.462 0.00 0.00 0.00 3.21
432 433 6.260050 ACGTTCACATAGACAAAAAGACATGT 59.740 34.615 0.00 0.00 0.00 3.21
433 434 7.439955 ACGTTCACATAGACAAAAAGACATGTA 59.560 33.333 0.00 0.00 0.00 2.29
434 435 8.279800 CGTTCACATAGACAAAAAGACATGTAA 58.720 33.333 0.00 0.00 0.00 2.41
438 439 9.345517 CACATAGACAAAAAGACATGTAATTGG 57.654 33.333 0.00 0.00 0.00 3.16
439 440 9.077885 ACATAGACAAAAAGACATGTAATTGGT 57.922 29.630 0.00 0.00 0.00 3.67
440 441 9.559958 CATAGACAAAAAGACATGTAATTGGTC 57.440 33.333 13.55 13.55 0.00 4.02
441 442 7.581213 AGACAAAAAGACATGTAATTGGTCA 57.419 32.000 19.52 0.00 34.04 4.02
442 443 8.181904 AGACAAAAAGACATGTAATTGGTCAT 57.818 30.769 19.52 8.48 34.04 3.06
443 444 9.295825 AGACAAAAAGACATGTAATTGGTCATA 57.704 29.630 19.52 0.00 34.04 2.15
444 445 9.906660 GACAAAAAGACATGTAATTGGTCATAA 57.093 29.630 15.36 0.00 34.04 1.90
450 451 9.466497 AAGACATGTAATTGGTCATAAATCTGT 57.534 29.630 0.00 0.00 34.04 3.41
451 452 9.113838 AGACATGTAATTGGTCATAAATCTGTC 57.886 33.333 0.00 0.00 34.04 3.51
452 453 8.806429 ACATGTAATTGGTCATAAATCTGTCA 57.194 30.769 0.00 0.00 0.00 3.58
453 454 9.412460 ACATGTAATTGGTCATAAATCTGTCAT 57.588 29.630 0.00 0.00 0.00 3.06
471 472 8.748380 TCTGTCATTATACTTCATCTAATGCG 57.252 34.615 0.00 0.00 34.39 4.73
472 473 7.329471 TCTGTCATTATACTTCATCTAATGCGC 59.671 37.037 0.00 0.00 34.39 6.09
473 474 6.368791 TGTCATTATACTTCATCTAATGCGCC 59.631 38.462 4.18 0.00 34.39 6.53
474 475 6.368791 GTCATTATACTTCATCTAATGCGCCA 59.631 38.462 4.18 0.00 34.39 5.69
475 476 6.591448 TCATTATACTTCATCTAATGCGCCAG 59.409 38.462 4.18 0.00 34.39 4.85
476 477 1.303309 ACTTCATCTAATGCGCCAGC 58.697 50.000 4.18 0.00 45.41 4.85
477 478 1.134280 ACTTCATCTAATGCGCCAGCT 60.134 47.619 4.18 0.00 45.42 4.24
478 479 1.945394 CTTCATCTAATGCGCCAGCTT 59.055 47.619 4.18 0.00 45.42 3.74
479 480 2.908688 TCATCTAATGCGCCAGCTTA 57.091 45.000 4.18 0.00 45.42 3.09
480 481 2.759191 TCATCTAATGCGCCAGCTTAG 58.241 47.619 4.18 7.33 45.42 2.18
481 482 1.196354 CATCTAATGCGCCAGCTTAGC 59.804 52.381 4.18 0.00 45.42 3.09
488 489 2.711924 GCCAGCTTAGCGCATGTC 59.288 61.111 11.47 0.00 42.61 3.06
489 490 2.108514 GCCAGCTTAGCGCATGTCA 61.109 57.895 11.47 0.00 42.61 3.58
490 491 1.647545 GCCAGCTTAGCGCATGTCAA 61.648 55.000 11.47 0.00 42.61 3.18
491 492 1.019673 CCAGCTTAGCGCATGTCAAT 58.980 50.000 11.47 0.00 42.61 2.57
492 493 2.212652 CCAGCTTAGCGCATGTCAATA 58.787 47.619 11.47 0.00 42.61 1.90
493 494 2.810274 CCAGCTTAGCGCATGTCAATAT 59.190 45.455 11.47 0.00 42.61 1.28
494 495 3.996363 CCAGCTTAGCGCATGTCAATATA 59.004 43.478 11.47 0.00 42.61 0.86
495 496 4.633126 CCAGCTTAGCGCATGTCAATATAT 59.367 41.667 11.47 0.00 42.61 0.86
496 497 5.812127 CCAGCTTAGCGCATGTCAATATATA 59.188 40.000 11.47 0.00 42.61 0.86
497 498 6.237942 CCAGCTTAGCGCATGTCAATATATAC 60.238 42.308 11.47 0.00 42.61 1.47
498 499 6.533012 CAGCTTAGCGCATGTCAATATATACT 59.467 38.462 11.47 0.00 42.61 2.12
499 500 7.702348 CAGCTTAGCGCATGTCAATATATACTA 59.298 37.037 11.47 0.00 42.61 1.82
500 501 7.702772 AGCTTAGCGCATGTCAATATATACTAC 59.297 37.037 11.47 0.00 42.61 2.73
501 502 7.043325 GCTTAGCGCATGTCAATATATACTACC 60.043 40.741 11.47 0.00 38.92 3.18
502 503 6.280855 AGCGCATGTCAATATATACTACCA 57.719 37.500 11.47 0.00 0.00 3.25
503 504 6.333416 AGCGCATGTCAATATATACTACCAG 58.667 40.000 11.47 0.00 0.00 4.00
504 505 6.071334 AGCGCATGTCAATATATACTACCAGT 60.071 38.462 11.47 0.00 0.00 4.00
505 506 7.122204 AGCGCATGTCAATATATACTACCAGTA 59.878 37.037 11.47 0.00 34.82 2.74
506 507 7.921214 GCGCATGTCAATATATACTACCAGTAT 59.079 37.037 0.30 4.39 43.36 2.12
522 523 9.431887 ACTACCAGTATAAATATTATGGCGTTG 57.568 33.333 0.00 0.00 0.00 4.10
523 524 9.431887 CTACCAGTATAAATATTATGGCGTTGT 57.568 33.333 0.00 0.00 0.00 3.32
524 525 8.094798 ACCAGTATAAATATTATGGCGTTGTG 57.905 34.615 0.00 0.00 0.00 3.33
525 526 7.021196 CCAGTATAAATATTATGGCGTTGTGC 58.979 38.462 0.00 0.00 45.38 4.57
545 546 3.127081 CATCACTTGATGCAAAGGTCG 57.873 47.619 6.29 0.00 44.44 4.79
546 547 2.542020 TCACTTGATGCAAAGGTCGA 57.458 45.000 3.31 0.00 0.00 4.20
547 548 2.416747 TCACTTGATGCAAAGGTCGAG 58.583 47.619 3.31 2.34 33.06 4.04
548 549 1.135859 CACTTGATGCAAAGGTCGAGC 60.136 52.381 6.48 6.48 30.45 5.03
549 550 0.095935 CTTGATGCAAAGGTCGAGCG 59.904 55.000 9.28 0.00 0.00 5.03
550 551 0.602638 TTGATGCAAAGGTCGAGCGT 60.603 50.000 9.28 2.41 0.00 5.07
551 552 0.602638 TGATGCAAAGGTCGAGCGTT 60.603 50.000 10.03 10.03 0.00 4.84
552 553 1.337354 TGATGCAAAGGTCGAGCGTTA 60.337 47.619 15.20 1.95 0.00 3.18
553 554 1.933853 GATGCAAAGGTCGAGCGTTAT 59.066 47.619 15.20 6.84 0.00 1.89
554 555 1.355971 TGCAAAGGTCGAGCGTTATC 58.644 50.000 15.20 10.69 0.00 1.75
555 556 0.651031 GCAAAGGTCGAGCGTTATCC 59.349 55.000 15.20 4.15 0.00 2.59
556 557 1.739371 GCAAAGGTCGAGCGTTATCCT 60.739 52.381 15.20 0.00 0.00 3.24
557 558 2.194271 CAAAGGTCGAGCGTTATCCTC 58.806 52.381 15.20 0.00 0.00 3.71
558 559 0.745468 AAGGTCGAGCGTTATCCTCC 59.255 55.000 9.28 0.00 0.00 4.30
559 560 0.106619 AGGTCGAGCGTTATCCTCCT 60.107 55.000 9.28 0.00 0.00 3.69
560 561 0.745468 GGTCGAGCGTTATCCTCCTT 59.255 55.000 0.00 0.00 0.00 3.36
561 562 1.136500 GGTCGAGCGTTATCCTCCTTT 59.864 52.381 0.00 0.00 0.00 3.11
562 563 2.461903 GTCGAGCGTTATCCTCCTTTC 58.538 52.381 0.00 0.00 0.00 2.62
563 564 1.407979 TCGAGCGTTATCCTCCTTTCC 59.592 52.381 0.00 0.00 0.00 3.13
564 565 1.136305 CGAGCGTTATCCTCCTTTCCA 59.864 52.381 0.00 0.00 0.00 3.53
565 566 2.418197 CGAGCGTTATCCTCCTTTCCAA 60.418 50.000 0.00 0.00 0.00 3.53
566 567 3.606687 GAGCGTTATCCTCCTTTCCAAA 58.393 45.455 0.00 0.00 0.00 3.28
567 568 4.007659 GAGCGTTATCCTCCTTTCCAAAA 58.992 43.478 0.00 0.00 0.00 2.44
568 569 4.403734 AGCGTTATCCTCCTTTCCAAAAA 58.596 39.130 0.00 0.00 0.00 1.94
594 595 8.757982 AAAGTACTAATAGGTTAGGATCGTCA 57.242 34.615 0.00 0.00 41.33 4.35
595 596 8.937207 AAGTACTAATAGGTTAGGATCGTCAT 57.063 34.615 0.00 0.00 41.33 3.06
596 597 8.338072 AGTACTAATAGGTTAGGATCGTCATG 57.662 38.462 0.00 0.00 41.33 3.07
597 598 7.943447 AGTACTAATAGGTTAGGATCGTCATGT 59.057 37.037 0.00 0.00 41.33 3.21
598 599 6.982852 ACTAATAGGTTAGGATCGTCATGTG 58.017 40.000 0.00 0.00 41.33 3.21
599 600 4.873746 ATAGGTTAGGATCGTCATGTGG 57.126 45.455 0.00 0.00 0.00 4.17
600 601 1.139058 AGGTTAGGATCGTCATGTGGC 59.861 52.381 0.00 0.00 0.00 5.01
601 602 1.134521 GGTTAGGATCGTCATGTGGCA 60.135 52.381 0.00 0.00 0.00 4.92
602 603 2.485479 GGTTAGGATCGTCATGTGGCAT 60.485 50.000 0.00 0.00 0.00 4.40
603 604 2.531522 TAGGATCGTCATGTGGCATG 57.468 50.000 2.93 2.93 0.00 4.06
604 605 0.816825 AGGATCGTCATGTGGCATGC 60.817 55.000 9.90 9.90 0.00 4.06
605 606 0.816825 GGATCGTCATGTGGCATGCT 60.817 55.000 18.92 0.00 0.00 3.79
606 607 0.306840 GATCGTCATGTGGCATGCTG 59.693 55.000 18.92 8.06 0.00 4.41
607 608 1.099295 ATCGTCATGTGGCATGCTGG 61.099 55.000 18.92 3.07 0.00 4.85
608 609 2.042259 CGTCATGTGGCATGCTGGT 61.042 57.895 18.92 0.00 0.00 4.00
609 610 1.588824 CGTCATGTGGCATGCTGGTT 61.589 55.000 18.92 0.00 0.00 3.67
610 611 0.171903 GTCATGTGGCATGCTGGTTC 59.828 55.000 18.92 0.10 0.00 3.62
611 612 0.966875 TCATGTGGCATGCTGGTTCC 60.967 55.000 18.92 0.00 0.00 3.62
612 613 0.968901 CATGTGGCATGCTGGTTCCT 60.969 55.000 18.92 0.00 0.00 3.36
613 614 0.968901 ATGTGGCATGCTGGTTCCTG 60.969 55.000 18.92 0.00 0.00 3.86
614 615 2.036098 TGGCATGCTGGTTCCTGG 59.964 61.111 18.92 0.00 0.00 4.45
615 616 3.455469 GGCATGCTGGTTCCTGGC 61.455 66.667 18.92 0.00 0.00 4.85
616 617 2.362120 GCATGCTGGTTCCTGGCT 60.362 61.111 11.37 0.00 0.00 4.75
617 618 2.413142 GCATGCTGGTTCCTGGCTC 61.413 63.158 11.37 0.00 0.00 4.70
618 619 2.110967 CATGCTGGTTCCTGGCTCG 61.111 63.158 0.00 0.00 0.00 5.03
619 620 3.984193 ATGCTGGTTCCTGGCTCGC 62.984 63.158 0.00 0.00 0.00 5.03
621 622 4.069232 CTGGTTCCTGGCTCGCGA 62.069 66.667 9.26 9.26 0.00 5.87
622 623 4.373116 TGGTTCCTGGCTCGCGAC 62.373 66.667 3.71 1.87 0.00 5.19
623 624 4.373116 GGTTCCTGGCTCGCGACA 62.373 66.667 3.71 0.98 0.00 4.35
624 625 2.357034 GTTCCTGGCTCGCGACAA 60.357 61.111 3.71 0.00 0.00 3.18
625 626 1.741770 GTTCCTGGCTCGCGACAAT 60.742 57.895 3.71 0.00 0.00 2.71
626 627 1.003839 TTCCTGGCTCGCGACAATT 60.004 52.632 3.71 0.00 0.00 2.32
627 628 0.248012 TTCCTGGCTCGCGACAATTA 59.752 50.000 3.71 0.00 0.00 1.40
628 629 0.248012 TCCTGGCTCGCGACAATTAA 59.752 50.000 3.71 0.00 0.00 1.40
629 630 0.373716 CCTGGCTCGCGACAATTAAC 59.626 55.000 3.71 0.00 0.00 2.01
630 631 1.075542 CTGGCTCGCGACAATTAACA 58.924 50.000 3.71 0.00 0.00 2.41
631 632 1.665679 CTGGCTCGCGACAATTAACAT 59.334 47.619 3.71 0.00 0.00 2.71
632 633 2.863740 CTGGCTCGCGACAATTAACATA 59.136 45.455 3.71 0.00 0.00 2.29
633 634 2.863740 TGGCTCGCGACAATTAACATAG 59.136 45.455 3.71 0.00 0.00 2.23
634 635 2.221055 GGCTCGCGACAATTAACATAGG 59.779 50.000 3.71 0.00 0.00 2.57
635 636 2.864343 GCTCGCGACAATTAACATAGGT 59.136 45.455 3.71 0.00 0.00 3.08
636 637 3.302480 GCTCGCGACAATTAACATAGGTG 60.302 47.826 3.71 0.00 0.00 4.00
637 638 3.191669 TCGCGACAATTAACATAGGTGG 58.808 45.455 3.71 0.00 0.00 4.61
638 639 2.933906 CGCGACAATTAACATAGGTGGT 59.066 45.455 0.00 0.00 0.00 4.16
639 640 3.242284 CGCGACAATTAACATAGGTGGTG 60.242 47.826 0.00 0.00 0.00 4.17
640 641 3.936453 GCGACAATTAACATAGGTGGTGA 59.064 43.478 0.00 0.00 0.00 4.02
641 642 4.574828 GCGACAATTAACATAGGTGGTGAT 59.425 41.667 0.00 0.00 0.00 3.06
642 643 5.277345 GCGACAATTAACATAGGTGGTGATC 60.277 44.000 0.00 0.00 0.00 2.92
643 644 5.051039 CGACAATTAACATAGGTGGTGATCG 60.051 44.000 0.00 0.00 0.00 3.69
644 645 5.984725 ACAATTAACATAGGTGGTGATCGA 58.015 37.500 0.00 0.00 0.00 3.59
645 646 6.049149 ACAATTAACATAGGTGGTGATCGAG 58.951 40.000 0.00 0.00 0.00 4.04
646 647 2.604046 AACATAGGTGGTGATCGAGC 57.396 50.000 0.00 0.00 0.00 5.03
647 648 0.385751 ACATAGGTGGTGATCGAGCG 59.614 55.000 0.00 0.00 0.00 5.03
648 649 0.319040 CATAGGTGGTGATCGAGCGG 60.319 60.000 0.00 0.00 0.00 5.52
649 650 0.755698 ATAGGTGGTGATCGAGCGGT 60.756 55.000 0.00 0.00 0.00 5.68
650 651 0.107066 TAGGTGGTGATCGAGCGGTA 60.107 55.000 0.00 0.00 0.00 4.02
651 652 0.755698 AGGTGGTGATCGAGCGGTAT 60.756 55.000 0.00 0.00 0.00 2.73
652 653 0.597637 GGTGGTGATCGAGCGGTATG 60.598 60.000 0.00 0.00 0.00 2.39
653 654 1.067416 TGGTGATCGAGCGGTATGC 59.933 57.895 0.00 0.00 46.98 3.14
665 666 2.864968 GCGGTATGCTACTAATCCTCG 58.135 52.381 0.00 0.00 41.73 4.63
666 667 2.486982 GCGGTATGCTACTAATCCTCGA 59.513 50.000 0.00 0.00 41.73 4.04
667 668 3.670091 GCGGTATGCTACTAATCCTCGAC 60.670 52.174 0.00 0.00 41.73 4.20
668 669 3.119919 CGGTATGCTACTAATCCTCGACC 60.120 52.174 0.00 0.00 0.00 4.79
669 670 3.193056 GGTATGCTACTAATCCTCGACCC 59.807 52.174 0.00 0.00 0.00 4.46
670 671 1.315690 TGCTACTAATCCTCGACCCG 58.684 55.000 0.00 0.00 0.00 5.28
671 672 1.134007 TGCTACTAATCCTCGACCCGA 60.134 52.381 0.00 0.00 0.00 5.14
672 673 2.161030 GCTACTAATCCTCGACCCGAT 58.839 52.381 0.00 0.00 34.61 4.18
673 674 3.244665 TGCTACTAATCCTCGACCCGATA 60.245 47.826 0.00 0.00 34.61 2.92
674 675 3.946558 GCTACTAATCCTCGACCCGATAT 59.053 47.826 0.00 0.00 34.61 1.63
675 676 4.201930 GCTACTAATCCTCGACCCGATATG 60.202 50.000 0.00 0.00 34.61 1.78
676 677 2.492484 ACTAATCCTCGACCCGATATGC 59.508 50.000 0.00 0.00 34.61 3.14
677 678 1.633774 AATCCTCGACCCGATATGCT 58.366 50.000 0.00 0.00 34.61 3.79
678 679 2.509166 ATCCTCGACCCGATATGCTA 57.491 50.000 0.00 0.00 34.61 3.49
679 680 1.531423 TCCTCGACCCGATATGCTAC 58.469 55.000 0.00 0.00 34.61 3.58
680 681 1.073444 TCCTCGACCCGATATGCTACT 59.927 52.381 0.00 0.00 34.61 2.57
681 682 1.887198 CCTCGACCCGATATGCTACTT 59.113 52.381 0.00 0.00 34.61 2.24
682 683 2.095161 CCTCGACCCGATATGCTACTTC 60.095 54.545 0.00 0.00 34.61 3.01
683 684 2.814919 CTCGACCCGATATGCTACTTCT 59.185 50.000 0.00 0.00 34.61 2.85
684 685 4.001652 CTCGACCCGATATGCTACTTCTA 58.998 47.826 0.00 0.00 34.61 2.10
685 686 4.001652 TCGACCCGATATGCTACTTCTAG 58.998 47.826 0.00 0.00 0.00 2.43
686 687 3.752222 CGACCCGATATGCTACTTCTAGT 59.248 47.826 0.00 0.00 0.00 2.57
687 688 4.378563 CGACCCGATATGCTACTTCTAGTG 60.379 50.000 0.00 0.00 0.00 2.74
688 689 4.726583 ACCCGATATGCTACTTCTAGTGA 58.273 43.478 0.00 0.00 0.00 3.41
689 690 5.138276 ACCCGATATGCTACTTCTAGTGAA 58.862 41.667 0.00 0.00 0.00 3.18
690 691 5.009811 ACCCGATATGCTACTTCTAGTGAAC 59.990 44.000 0.00 0.00 0.00 3.18
691 692 5.241949 CCCGATATGCTACTTCTAGTGAACT 59.758 44.000 0.00 0.00 0.00 3.01
692 693 6.430308 CCCGATATGCTACTTCTAGTGAACTA 59.570 42.308 0.00 0.00 0.00 2.24
693 694 7.121463 CCCGATATGCTACTTCTAGTGAACTAT 59.879 40.741 0.00 0.00 0.00 2.12
694 695 8.516234 CCGATATGCTACTTCTAGTGAACTATT 58.484 37.037 0.00 0.00 0.00 1.73
804 805 4.513692 TGCTAATTTTTGCGTGTCAGTACT 59.486 37.500 0.00 0.00 0.00 2.73
1213 1222 7.092623 GGGTTAGGGTTTCATATTTGGGATTTT 60.093 37.037 0.00 0.00 0.00 1.82
2251 2278 5.979288 GGTAACTAAGTGTCAGGAGAAGA 57.021 43.478 0.00 0.00 0.00 2.87
2812 2839 5.882000 CACTGATCCATTACAACTTGATCCA 59.118 40.000 0.00 0.00 32.70 3.41
2813 2840 6.544931 CACTGATCCATTACAACTTGATCCAT 59.455 38.462 0.00 0.00 32.70 3.41
2814 2841 7.067859 CACTGATCCATTACAACTTGATCCATT 59.932 37.037 0.00 0.00 32.70 3.16
2815 2842 8.274322 ACTGATCCATTACAACTTGATCCATTA 58.726 33.333 0.00 0.00 32.70 1.90
2816 2843 8.450578 TGATCCATTACAACTTGATCCATTAC 57.549 34.615 0.00 0.00 32.70 1.89
2817 2844 8.052141 TGATCCATTACAACTTGATCCATTACA 58.948 33.333 0.00 0.00 32.70 2.41
2818 2845 8.821686 ATCCATTACAACTTGATCCATTACAA 57.178 30.769 0.00 0.00 0.00 2.41
2819 2846 8.050778 TCCATTACAACTTGATCCATTACAAC 57.949 34.615 0.00 0.00 0.00 3.32
2820 2847 7.888021 TCCATTACAACTTGATCCATTACAACT 59.112 33.333 0.00 0.00 0.00 3.16
2821 2848 8.522830 CCATTACAACTTGATCCATTACAACTT 58.477 33.333 0.00 0.00 0.00 2.66
3184 3286 6.040247 CACCGTGCTATTAAGATACACAAGA 58.960 40.000 4.81 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 4.717313 GTCCCCGAGGTGGTTGGC 62.717 72.222 0.00 0.00 35.15 4.52
13 14 4.029809 GGTCCCCGAGGTGGTTGG 62.030 72.222 0.00 0.00 35.15 3.77
14 15 3.246112 TGGTCCCCGAGGTGGTTG 61.246 66.667 0.00 0.00 35.15 3.77
15 16 3.246880 GTGGTCCCCGAGGTGGTT 61.247 66.667 0.00 0.00 35.15 3.67
18 19 3.706373 CTGGTGGTCCCCGAGGTG 61.706 72.222 0.00 0.00 0.00 4.00
20 21 4.715130 TCCTGGTGGTCCCCGAGG 62.715 72.222 0.00 0.00 34.23 4.63
21 22 2.365635 ATCCTGGTGGTCCCCGAG 60.366 66.667 0.00 0.00 34.23 4.63
22 23 2.365105 GATCCTGGTGGTCCCCGA 60.365 66.667 0.00 0.00 34.23 5.14
23 24 3.849951 CGATCCTGGTGGTCCCCG 61.850 72.222 0.00 0.00 34.23 5.73
24 25 2.365105 TCGATCCTGGTGGTCCCC 60.365 66.667 0.00 0.00 34.23 4.81
25 26 3.095347 GCTCGATCCTGGTGGTCCC 62.095 68.421 0.00 0.00 34.23 4.46
26 27 2.501610 GCTCGATCCTGGTGGTCC 59.498 66.667 0.00 0.00 34.23 4.46
27 28 2.105128 CGCTCGATCCTGGTGGTC 59.895 66.667 0.00 0.00 34.23 4.02
28 29 3.461773 CCGCTCGATCCTGGTGGT 61.462 66.667 0.00 0.00 34.23 4.16
29 30 3.144120 CTCCGCTCGATCCTGGTGG 62.144 68.421 0.00 0.00 0.00 4.61
30 31 2.415010 CTCCGCTCGATCCTGGTG 59.585 66.667 0.00 0.00 0.00 4.17
31 32 3.532155 GCTCCGCTCGATCCTGGT 61.532 66.667 0.00 0.00 0.00 4.00
32 33 3.531207 TGCTCCGCTCGATCCTGG 61.531 66.667 0.00 0.00 0.00 4.45
33 34 2.279120 GTGCTCCGCTCGATCCTG 60.279 66.667 0.00 0.00 0.00 3.86
34 35 2.755876 TGTGCTCCGCTCGATCCT 60.756 61.111 0.00 0.00 0.00 3.24
35 36 2.279120 CTGTGCTCCGCTCGATCC 60.279 66.667 0.00 0.00 0.00 3.36
36 37 2.279120 CCTGTGCTCCGCTCGATC 60.279 66.667 0.00 0.00 0.00 3.69
37 38 3.842923 CCCTGTGCTCCGCTCGAT 61.843 66.667 0.00 0.00 0.00 3.59
53 54 4.214327 CTTCTCCTCGCCCTCGCC 62.214 72.222 0.00 0.00 35.26 5.54
54 55 4.882396 GCTTCTCCTCGCCCTCGC 62.882 72.222 0.00 0.00 35.26 5.03
55 56 4.214327 GGCTTCTCCTCGCCCTCG 62.214 72.222 0.00 0.00 40.43 4.63
56 57 4.214327 CGGCTTCTCCTCGCCCTC 62.214 72.222 0.00 0.00 43.38 4.30
62 63 3.157949 CTCCCCCGGCTTCTCCTC 61.158 72.222 0.00 0.00 0.00 3.71
63 64 4.806339 CCTCCCCCGGCTTCTCCT 62.806 72.222 0.00 0.00 0.00 3.69
121 122 4.867599 GATGTCGGACCGGGTCGC 62.868 72.222 20.35 13.30 32.65 5.19
122 123 4.547905 CGATGTCGGACCGGGTCG 62.548 72.222 20.35 16.57 32.65 4.79
123 124 3.446570 ACGATGTCGGACCGGGTC 61.447 66.667 19.06 19.06 44.95 4.46
124 125 3.755628 CACGATGTCGGACCGGGT 61.756 66.667 15.25 0.00 44.95 5.28
125 126 4.508128 CCACGATGTCGGACCGGG 62.508 72.222 15.25 3.88 44.95 5.73
126 127 3.445687 TCCACGATGTCGGACCGG 61.446 66.667 15.25 0.00 44.95 5.28
127 128 2.202570 GTCCACGATGTCGGACCG 60.203 66.667 7.84 7.84 45.03 4.79
129 130 2.879462 GCGTCCACGATGTCGGAC 60.879 66.667 2.58 0.00 46.88 4.79
130 131 4.124351 GGCGTCCACGATGTCGGA 62.124 66.667 2.58 0.00 44.95 4.55
149 150 4.767255 GGCTGTCCACTCCGGCTG 62.767 72.222 0.00 0.00 34.56 4.85
213 214 3.535962 CTCCCTCCTCCTCTGCGC 61.536 72.222 0.00 0.00 0.00 6.09
214 215 2.837291 CCTCCCTCCTCCTCTGCG 60.837 72.222 0.00 0.00 0.00 5.18
215 216 1.002274 TTCCTCCCTCCTCCTCTGC 59.998 63.158 0.00 0.00 0.00 4.26
216 217 1.048160 GCTTCCTCCCTCCTCCTCTG 61.048 65.000 0.00 0.00 0.00 3.35
217 218 1.313129 GCTTCCTCCCTCCTCCTCT 59.687 63.158 0.00 0.00 0.00 3.69
218 219 2.131067 CGCTTCCTCCCTCCTCCTC 61.131 68.421 0.00 0.00 0.00 3.71
219 220 2.042435 CGCTTCCTCCCTCCTCCT 60.042 66.667 0.00 0.00 0.00 3.69
220 221 3.855853 GCGCTTCCTCCCTCCTCC 61.856 72.222 0.00 0.00 0.00 4.30
221 222 3.077556 TGCGCTTCCTCCCTCCTC 61.078 66.667 9.73 0.00 0.00 3.71
222 223 3.394836 GTGCGCTTCCTCCCTCCT 61.395 66.667 9.73 0.00 0.00 3.69
223 224 4.821589 CGTGCGCTTCCTCCCTCC 62.822 72.222 9.73 0.00 0.00 4.30
234 235 2.322081 TTTAACCCTGAGCGTGCGC 61.322 57.895 8.67 8.67 42.33 6.09
235 236 1.495951 GTTTAACCCTGAGCGTGCG 59.504 57.895 0.00 0.00 0.00 5.34
236 237 0.605589 AGGTTTAACCCTGAGCGTGC 60.606 55.000 10.93 0.00 39.75 5.34
237 238 3.625745 AGGTTTAACCCTGAGCGTG 57.374 52.632 10.93 0.00 39.75 5.34
244 245 1.202891 GCCACTCACAGGTTTAACCCT 60.203 52.381 10.93 0.00 39.75 4.34
245 246 1.202891 AGCCACTCACAGGTTTAACCC 60.203 52.381 10.93 0.00 39.75 4.11
246 247 1.880027 CAGCCACTCACAGGTTTAACC 59.120 52.381 5.91 5.91 38.99 2.85
247 248 2.846193 TCAGCCACTCACAGGTTTAAC 58.154 47.619 0.00 0.00 0.00 2.01
248 249 3.569194 TTCAGCCACTCACAGGTTTAA 57.431 42.857 0.00 0.00 0.00 1.52
249 250 3.569194 TTTCAGCCACTCACAGGTTTA 57.431 42.857 0.00 0.00 0.00 2.01
250 251 2.435372 TTTCAGCCACTCACAGGTTT 57.565 45.000 0.00 0.00 0.00 3.27
251 252 2.435372 TTTTCAGCCACTCACAGGTT 57.565 45.000 0.00 0.00 0.00 3.50
252 253 2.664402 ATTTTCAGCCACTCACAGGT 57.336 45.000 0.00 0.00 0.00 4.00
253 254 6.757897 TTATAATTTTCAGCCACTCACAGG 57.242 37.500 0.00 0.00 0.00 4.00
254 255 9.941664 CTAATTATAATTTTCAGCCACTCACAG 57.058 33.333 15.64 0.00 0.00 3.66
255 256 9.461312 ACTAATTATAATTTTCAGCCACTCACA 57.539 29.630 15.64 0.00 0.00 3.58
279 280 9.541884 AAAAGAGAGAAGGTAGAGAAGAATACT 57.458 33.333 0.00 0.00 0.00 2.12
282 283 8.318412 GGAAAAAGAGAGAAGGTAGAGAAGAAT 58.682 37.037 0.00 0.00 0.00 2.40
283 284 7.524038 CGGAAAAAGAGAGAAGGTAGAGAAGAA 60.524 40.741 0.00 0.00 0.00 2.52
284 285 6.071840 CGGAAAAAGAGAGAAGGTAGAGAAGA 60.072 42.308 0.00 0.00 0.00 2.87
285 286 6.096695 CGGAAAAAGAGAGAAGGTAGAGAAG 58.903 44.000 0.00 0.00 0.00 2.85
286 287 5.539193 ACGGAAAAAGAGAGAAGGTAGAGAA 59.461 40.000 0.00 0.00 0.00 2.87
287 288 5.078256 ACGGAAAAAGAGAGAAGGTAGAGA 58.922 41.667 0.00 0.00 0.00 3.10
288 289 5.184287 AGACGGAAAAAGAGAGAAGGTAGAG 59.816 44.000 0.00 0.00 0.00 2.43
289 290 5.078256 AGACGGAAAAAGAGAGAAGGTAGA 58.922 41.667 0.00 0.00 0.00 2.59
290 291 5.394224 AGACGGAAAAAGAGAGAAGGTAG 57.606 43.478 0.00 0.00 0.00 3.18
291 292 5.303589 TGAAGACGGAAAAAGAGAGAAGGTA 59.696 40.000 0.00 0.00 0.00 3.08
292 293 4.101119 TGAAGACGGAAAAAGAGAGAAGGT 59.899 41.667 0.00 0.00 0.00 3.50
293 294 4.632153 TGAAGACGGAAAAAGAGAGAAGG 58.368 43.478 0.00 0.00 0.00 3.46
294 295 7.978975 AGATATGAAGACGGAAAAAGAGAGAAG 59.021 37.037 0.00 0.00 0.00 2.85
295 296 7.841956 AGATATGAAGACGGAAAAAGAGAGAA 58.158 34.615 0.00 0.00 0.00 2.87
296 297 7.411486 AGATATGAAGACGGAAAAAGAGAGA 57.589 36.000 0.00 0.00 0.00 3.10
297 298 9.405587 GATAGATATGAAGACGGAAAAAGAGAG 57.594 37.037 0.00 0.00 0.00 3.20
298 299 9.137459 AGATAGATATGAAGACGGAAAAAGAGA 57.863 33.333 0.00 0.00 0.00 3.10
299 300 9.190858 CAGATAGATATGAAGACGGAAAAAGAG 57.809 37.037 0.00 0.00 0.00 2.85
300 301 8.696374 ACAGATAGATATGAAGACGGAAAAAGA 58.304 33.333 0.00 0.00 0.00 2.52
301 302 8.879342 ACAGATAGATATGAAGACGGAAAAAG 57.121 34.615 0.00 0.00 0.00 2.27
305 306 9.914131 CAAATACAGATAGATATGAAGACGGAA 57.086 33.333 0.00 0.00 0.00 4.30
306 307 8.029522 GCAAATACAGATAGATATGAAGACGGA 58.970 37.037 0.00 0.00 0.00 4.69
307 308 7.276658 GGCAAATACAGATAGATATGAAGACGG 59.723 40.741 0.00 0.00 0.00 4.79
308 309 8.031864 AGGCAAATACAGATAGATATGAAGACG 58.968 37.037 0.00 0.00 0.00 4.18
317 318 9.265862 AGCTTCTATAGGCAAATACAGATAGAT 57.734 33.333 0.00 0.00 0.00 1.98
318 319 8.657387 AGCTTCTATAGGCAAATACAGATAGA 57.343 34.615 0.00 0.00 0.00 1.98
321 322 9.664332 CATTAGCTTCTATAGGCAAATACAGAT 57.336 33.333 0.00 0.00 0.00 2.90
322 323 8.651389 ACATTAGCTTCTATAGGCAAATACAGA 58.349 33.333 0.00 0.00 0.00 3.41
323 324 8.839310 ACATTAGCTTCTATAGGCAAATACAG 57.161 34.615 0.00 0.00 0.00 2.74
328 329 9.383519 GCATATACATTAGCTTCTATAGGCAAA 57.616 33.333 0.00 0.00 31.98 3.68
329 330 8.539544 TGCATATACATTAGCTTCTATAGGCAA 58.460 33.333 12.63 0.00 36.46 4.52
330 331 8.078060 TGCATATACATTAGCTTCTATAGGCA 57.922 34.615 11.67 11.67 36.83 4.75
331 332 8.948631 TTGCATATACATTAGCTTCTATAGGC 57.051 34.615 0.00 0.75 32.20 3.93
332 333 9.539825 CCTTGCATATACATTAGCTTCTATAGG 57.460 37.037 0.00 0.00 0.00 2.57
333 334 9.039870 GCCTTGCATATACATTAGCTTCTATAG 57.960 37.037 0.00 0.00 0.00 1.31
334 335 8.762645 AGCCTTGCATATACATTAGCTTCTATA 58.237 33.333 0.00 0.00 0.00 1.31
335 336 7.628234 AGCCTTGCATATACATTAGCTTCTAT 58.372 34.615 0.00 0.00 0.00 1.98
336 337 7.009179 AGCCTTGCATATACATTAGCTTCTA 57.991 36.000 0.00 0.00 0.00 2.10
337 338 5.874093 AGCCTTGCATATACATTAGCTTCT 58.126 37.500 0.00 0.00 0.00 2.85
338 339 5.936956 AGAGCCTTGCATATACATTAGCTTC 59.063 40.000 0.00 0.00 0.00 3.86
339 340 5.874093 AGAGCCTTGCATATACATTAGCTT 58.126 37.500 0.00 0.00 0.00 3.74
340 341 5.495926 AGAGCCTTGCATATACATTAGCT 57.504 39.130 0.00 0.00 0.00 3.32
341 342 5.123027 GGAAGAGCCTTGCATATACATTAGC 59.877 44.000 0.00 0.00 0.00 3.09
342 343 6.734104 GGAAGAGCCTTGCATATACATTAG 57.266 41.667 0.00 0.00 0.00 1.73
360 361 6.704056 AAGGGAATCAACTCTTAAGGAAGA 57.296 37.500 1.85 0.00 39.47 2.87
361 362 9.467796 AATAAAGGGAATCAACTCTTAAGGAAG 57.532 33.333 1.85 0.00 29.74 3.46
388 389 9.180678 GTGAACGTGAAAGACATGAAAAATAAT 57.819 29.630 0.00 0.00 38.72 1.28
389 390 8.184848 TGTGAACGTGAAAGACATGAAAAATAA 58.815 29.630 0.00 0.00 38.72 1.40
390 391 7.698628 TGTGAACGTGAAAGACATGAAAAATA 58.301 30.769 0.00 0.00 38.72 1.40
391 392 6.559810 TGTGAACGTGAAAGACATGAAAAAT 58.440 32.000 0.00 0.00 38.72 1.82
392 393 5.944013 TGTGAACGTGAAAGACATGAAAAA 58.056 33.333 0.00 0.00 38.72 1.94
393 394 5.553290 TGTGAACGTGAAAGACATGAAAA 57.447 34.783 0.00 0.00 38.72 2.29
394 395 5.749596 ATGTGAACGTGAAAGACATGAAA 57.250 34.783 0.00 0.00 38.72 2.69
395 396 6.145534 GTCTATGTGAACGTGAAAGACATGAA 59.854 38.462 0.00 0.00 38.72 2.57
396 397 5.633601 GTCTATGTGAACGTGAAAGACATGA 59.366 40.000 0.00 0.00 38.72 3.07
397 398 5.405269 TGTCTATGTGAACGTGAAAGACATG 59.595 40.000 10.51 0.00 37.53 3.21
398 399 5.538118 TGTCTATGTGAACGTGAAAGACAT 58.462 37.500 10.51 7.49 37.53 3.06
399 400 4.939271 TGTCTATGTGAACGTGAAAGACA 58.061 39.130 10.51 10.51 39.48 3.41
400 401 5.900339 TTGTCTATGTGAACGTGAAAGAC 57.100 39.130 0.00 0.00 34.00 3.01
401 402 6.912203 TTTTGTCTATGTGAACGTGAAAGA 57.088 33.333 0.00 0.00 0.00 2.52
402 403 7.373441 GTCTTTTTGTCTATGTGAACGTGAAAG 59.627 37.037 0.00 0.00 0.00 2.62
403 404 7.148390 TGTCTTTTTGTCTATGTGAACGTGAAA 60.148 33.333 0.00 0.00 0.00 2.69
404 405 6.314152 TGTCTTTTTGTCTATGTGAACGTGAA 59.686 34.615 0.00 0.00 0.00 3.18
405 406 5.813157 TGTCTTTTTGTCTATGTGAACGTGA 59.187 36.000 0.00 0.00 0.00 4.35
406 407 6.043327 TGTCTTTTTGTCTATGTGAACGTG 57.957 37.500 0.00 0.00 0.00 4.49
407 408 6.260050 ACATGTCTTTTTGTCTATGTGAACGT 59.740 34.615 0.00 0.00 0.00 3.99
408 409 6.658831 ACATGTCTTTTTGTCTATGTGAACG 58.341 36.000 0.00 0.00 0.00 3.95
412 413 9.345517 CCAATTACATGTCTTTTTGTCTATGTG 57.654 33.333 0.00 0.00 31.84 3.21
413 414 9.077885 ACCAATTACATGTCTTTTTGTCTATGT 57.922 29.630 0.00 0.00 33.74 2.29
414 415 9.559958 GACCAATTACATGTCTTTTTGTCTATG 57.440 33.333 0.00 0.00 0.00 2.23
415 416 9.295825 TGACCAATTACATGTCTTTTTGTCTAT 57.704 29.630 0.00 0.00 0.00 1.98
416 417 8.684386 TGACCAATTACATGTCTTTTTGTCTA 57.316 30.769 0.00 0.00 0.00 2.59
417 418 7.581213 TGACCAATTACATGTCTTTTTGTCT 57.419 32.000 0.00 0.00 0.00 3.41
418 419 9.906660 TTATGACCAATTACATGTCTTTTTGTC 57.093 29.630 0.00 7.05 0.00 3.18
424 425 9.466497 ACAGATTTATGACCAATTACATGTCTT 57.534 29.630 0.00 0.00 0.00 3.01
425 426 9.113838 GACAGATTTATGACCAATTACATGTCT 57.886 33.333 0.00 0.00 0.00 3.41
426 427 8.892723 TGACAGATTTATGACCAATTACATGTC 58.107 33.333 0.00 0.00 0.00 3.06
427 428 8.806429 TGACAGATTTATGACCAATTACATGT 57.194 30.769 2.69 2.69 0.00 3.21
445 446 9.363763 CGCATTAGATGAAGTATAATGACAGAT 57.636 33.333 8.04 0.00 42.09 2.90
446 447 7.329471 GCGCATTAGATGAAGTATAATGACAGA 59.671 37.037 0.30 0.00 42.09 3.41
447 448 7.412346 GGCGCATTAGATGAAGTATAATGACAG 60.412 40.741 10.83 1.33 42.09 3.51
448 449 6.368791 GGCGCATTAGATGAAGTATAATGACA 59.631 38.462 10.83 0.00 42.09 3.58
449 450 6.368791 TGGCGCATTAGATGAAGTATAATGAC 59.631 38.462 10.83 0.61 42.09 3.06
450 451 6.463360 TGGCGCATTAGATGAAGTATAATGA 58.537 36.000 10.83 0.00 42.09 2.57
451 452 6.674037 GCTGGCGCATTAGATGAAGTATAATG 60.674 42.308 10.83 0.00 42.30 1.90
452 453 5.352569 GCTGGCGCATTAGATGAAGTATAAT 59.647 40.000 10.83 0.00 35.78 1.28
453 454 4.690748 GCTGGCGCATTAGATGAAGTATAA 59.309 41.667 10.83 0.00 35.78 0.98
454 455 4.021104 AGCTGGCGCATTAGATGAAGTATA 60.021 41.667 10.83 0.00 39.10 1.47
455 456 3.070018 GCTGGCGCATTAGATGAAGTAT 58.930 45.455 10.83 0.00 35.78 2.12
456 457 2.103094 AGCTGGCGCATTAGATGAAGTA 59.897 45.455 10.83 0.00 39.10 2.24
457 458 1.134280 AGCTGGCGCATTAGATGAAGT 60.134 47.619 10.83 0.00 39.10 3.01
458 459 1.590932 AGCTGGCGCATTAGATGAAG 58.409 50.000 10.83 0.00 39.10 3.02
459 460 2.042686 AAGCTGGCGCATTAGATGAA 57.957 45.000 10.83 0.00 39.10 2.57
460 461 2.759191 CTAAGCTGGCGCATTAGATGA 58.241 47.619 10.83 0.00 39.10 2.92
461 462 1.196354 GCTAAGCTGGCGCATTAGATG 59.804 52.381 10.83 0.00 39.10 2.90
462 463 1.517242 GCTAAGCTGGCGCATTAGAT 58.483 50.000 10.83 0.00 39.10 1.98
463 464 0.875908 CGCTAAGCTGGCGCATTAGA 60.876 55.000 18.68 0.00 45.83 2.10
464 465 1.566563 CGCTAAGCTGGCGCATTAG 59.433 57.895 18.68 12.55 45.83 1.73
465 466 3.717899 CGCTAAGCTGGCGCATTA 58.282 55.556 18.68 1.46 45.83 1.90
476 477 7.973944 TGGTAGTATATATTGACATGCGCTAAG 59.026 37.037 9.73 0.08 0.00 2.18
477 478 7.832769 TGGTAGTATATATTGACATGCGCTAA 58.167 34.615 9.73 0.00 0.00 3.09
478 479 7.122204 ACTGGTAGTATATATTGACATGCGCTA 59.878 37.037 9.73 0.00 0.00 4.26
479 480 6.071334 ACTGGTAGTATATATTGACATGCGCT 60.071 38.462 9.73 0.00 0.00 5.92
480 481 6.100004 ACTGGTAGTATATATTGACATGCGC 58.900 40.000 0.00 0.00 0.00 6.09
496 497 9.431887 CAACGCCATAATATTTATACTGGTAGT 57.568 33.333 0.00 0.00 0.00 2.73
497 498 9.431887 ACAACGCCATAATATTTATACTGGTAG 57.568 33.333 0.00 0.00 0.00 3.18
498 499 9.210329 CACAACGCCATAATATTTATACTGGTA 57.790 33.333 0.00 0.00 0.00 3.25
499 500 7.308348 GCACAACGCCATAATATTTATACTGGT 60.308 37.037 0.00 0.00 32.94 4.00
500 501 7.021196 GCACAACGCCATAATATTTATACTGG 58.979 38.462 0.00 0.00 32.94 4.00
501 502 7.580600 TGCACAACGCCATAATATTTATACTG 58.419 34.615 0.00 0.00 41.33 2.74
502 503 7.737972 TGCACAACGCCATAATATTTATACT 57.262 32.000 0.00 0.00 41.33 2.12
503 504 8.233868 TGATGCACAACGCCATAATATTTATAC 58.766 33.333 0.00 0.00 41.33 1.47
504 505 8.233868 GTGATGCACAACGCCATAATATTTATA 58.766 33.333 0.00 0.00 41.33 0.98
505 506 7.040478 AGTGATGCACAACGCCATAATATTTAT 60.040 33.333 0.00 0.00 41.33 1.40
506 507 6.262049 AGTGATGCACAACGCCATAATATTTA 59.738 34.615 0.00 0.00 41.33 1.40
507 508 5.067674 AGTGATGCACAACGCCATAATATTT 59.932 36.000 0.00 0.00 41.33 1.40
508 509 4.580167 AGTGATGCACAACGCCATAATATT 59.420 37.500 0.00 0.00 41.33 1.28
509 510 4.136796 AGTGATGCACAACGCCATAATAT 58.863 39.130 0.00 0.00 41.33 1.28
510 511 3.540617 AGTGATGCACAACGCCATAATA 58.459 40.909 0.00 0.00 41.33 0.98
511 512 2.368439 AGTGATGCACAACGCCATAAT 58.632 42.857 0.00 0.00 41.33 1.28
512 513 1.819928 AGTGATGCACAACGCCATAA 58.180 45.000 0.00 0.00 41.33 1.90
513 514 1.468127 CAAGTGATGCACAACGCCATA 59.532 47.619 0.00 0.00 41.33 2.74
514 515 0.241749 CAAGTGATGCACAACGCCAT 59.758 50.000 0.00 0.00 41.33 4.40
515 516 0.817229 TCAAGTGATGCACAACGCCA 60.817 50.000 0.00 0.00 41.33 5.69
516 517 0.523072 ATCAAGTGATGCACAACGCC 59.477 50.000 0.00 0.00 41.33 5.68
517 518 1.609932 CATCAAGTGATGCACAACGC 58.390 50.000 8.29 0.00 44.44 4.84
526 527 3.005554 CTCGACCTTTGCATCAAGTGAT 58.994 45.455 0.00 0.00 34.56 3.06
527 528 2.416747 CTCGACCTTTGCATCAAGTGA 58.583 47.619 0.00 0.00 0.00 3.41
528 529 1.135859 GCTCGACCTTTGCATCAAGTG 60.136 52.381 0.00 0.00 0.00 3.16
529 530 1.160137 GCTCGACCTTTGCATCAAGT 58.840 50.000 0.00 0.00 0.00 3.16
530 531 0.095935 CGCTCGACCTTTGCATCAAG 59.904 55.000 0.00 0.00 0.00 3.02
531 532 0.602638 ACGCTCGACCTTTGCATCAA 60.603 50.000 0.00 0.00 0.00 2.57
532 533 0.602638 AACGCTCGACCTTTGCATCA 60.603 50.000 0.00 0.00 0.00 3.07
533 534 1.355971 TAACGCTCGACCTTTGCATC 58.644 50.000 0.00 0.00 0.00 3.91
534 535 1.933853 GATAACGCTCGACCTTTGCAT 59.066 47.619 0.00 0.00 0.00 3.96
535 536 1.355971 GATAACGCTCGACCTTTGCA 58.644 50.000 0.00 0.00 0.00 4.08
536 537 0.651031 GGATAACGCTCGACCTTTGC 59.349 55.000 0.00 0.00 0.00 3.68
537 538 2.194271 GAGGATAACGCTCGACCTTTG 58.806 52.381 0.00 0.00 0.00 2.77
538 539 1.136500 GGAGGATAACGCTCGACCTTT 59.864 52.381 0.00 0.00 0.00 3.11
539 540 0.745468 GGAGGATAACGCTCGACCTT 59.255 55.000 0.00 0.00 0.00 3.50
540 541 0.106619 AGGAGGATAACGCTCGACCT 60.107 55.000 0.00 0.00 0.00 3.85
541 542 0.745468 AAGGAGGATAACGCTCGACC 59.255 55.000 0.00 0.00 0.00 4.79
542 543 2.461903 GAAAGGAGGATAACGCTCGAC 58.538 52.381 0.00 0.00 0.00 4.20
543 544 1.407979 GGAAAGGAGGATAACGCTCGA 59.592 52.381 0.00 0.00 0.00 4.04
544 545 1.136305 TGGAAAGGAGGATAACGCTCG 59.864 52.381 0.00 0.00 0.00 5.03
545 546 2.981859 TGGAAAGGAGGATAACGCTC 57.018 50.000 0.00 0.00 0.00 5.03
546 547 3.713826 TTTGGAAAGGAGGATAACGCT 57.286 42.857 0.00 0.00 0.00 5.07
547 548 4.776795 TTTTTGGAAAGGAGGATAACGC 57.223 40.909 0.00 0.00 0.00 4.84
568 569 9.193806 TGACGATCCTAACCTATTAGTACTTTT 57.806 33.333 0.00 0.00 36.77 2.27
569 570 8.757982 TGACGATCCTAACCTATTAGTACTTT 57.242 34.615 0.00 0.00 36.77 2.66
570 571 8.794553 CATGACGATCCTAACCTATTAGTACTT 58.205 37.037 0.00 0.00 36.77 2.24
571 572 7.943447 ACATGACGATCCTAACCTATTAGTACT 59.057 37.037 0.00 0.00 36.77 2.73
572 573 8.021973 CACATGACGATCCTAACCTATTAGTAC 58.978 40.741 0.00 0.00 36.77 2.73
573 574 7.176165 CCACATGACGATCCTAACCTATTAGTA 59.824 40.741 0.00 0.00 36.77 1.82
574 575 6.015350 CCACATGACGATCCTAACCTATTAGT 60.015 42.308 0.00 0.00 36.77 2.24
575 576 6.390721 CCACATGACGATCCTAACCTATTAG 58.609 44.000 0.00 0.00 38.04 1.73
576 577 5.279306 GCCACATGACGATCCTAACCTATTA 60.279 44.000 0.00 0.00 0.00 0.98
577 578 4.503296 GCCACATGACGATCCTAACCTATT 60.503 45.833 0.00 0.00 0.00 1.73
578 579 3.006967 GCCACATGACGATCCTAACCTAT 59.993 47.826 0.00 0.00 0.00 2.57
579 580 2.364324 GCCACATGACGATCCTAACCTA 59.636 50.000 0.00 0.00 0.00 3.08
580 581 1.139058 GCCACATGACGATCCTAACCT 59.861 52.381 0.00 0.00 0.00 3.50
581 582 1.134521 TGCCACATGACGATCCTAACC 60.135 52.381 0.00 0.00 0.00 2.85
582 583 2.309528 TGCCACATGACGATCCTAAC 57.690 50.000 0.00 0.00 0.00 2.34
583 584 2.837498 CATGCCACATGACGATCCTAA 58.163 47.619 0.00 0.00 0.00 2.69
584 585 1.541015 GCATGCCACATGACGATCCTA 60.541 52.381 6.36 0.00 0.00 2.94
585 586 0.816825 GCATGCCACATGACGATCCT 60.817 55.000 6.36 0.00 0.00 3.24
586 587 0.816825 AGCATGCCACATGACGATCC 60.817 55.000 15.66 0.00 0.00 3.36
587 588 0.306840 CAGCATGCCACATGACGATC 59.693 55.000 15.66 0.00 0.00 3.69
588 589 1.099295 CCAGCATGCCACATGACGAT 61.099 55.000 15.66 0.00 31.97 3.73
589 590 1.746239 CCAGCATGCCACATGACGA 60.746 57.895 15.66 0.00 31.97 4.20
590 591 1.588824 AACCAGCATGCCACATGACG 61.589 55.000 15.66 0.00 31.97 4.35
591 592 0.171903 GAACCAGCATGCCACATGAC 59.828 55.000 15.66 3.32 31.97 3.06
592 593 0.966875 GGAACCAGCATGCCACATGA 60.967 55.000 15.66 0.00 31.97 3.07
593 594 0.968901 AGGAACCAGCATGCCACATG 60.969 55.000 15.66 5.81 31.97 3.21
594 595 0.968901 CAGGAACCAGCATGCCACAT 60.969 55.000 15.66 0.00 31.97 3.21
595 596 1.604308 CAGGAACCAGCATGCCACA 60.604 57.895 15.66 0.00 31.97 4.17
596 597 2.345760 CCAGGAACCAGCATGCCAC 61.346 63.158 15.66 1.33 31.97 5.01
597 598 2.036098 CCAGGAACCAGCATGCCA 59.964 61.111 15.66 0.00 31.97 4.92
598 599 3.455469 GCCAGGAACCAGCATGCC 61.455 66.667 15.66 0.00 31.97 4.40
599 600 2.362120 AGCCAGGAACCAGCATGC 60.362 61.111 10.51 10.51 31.97 4.06
600 601 2.110967 CGAGCCAGGAACCAGCATG 61.111 63.158 0.00 0.00 0.00 4.06
601 602 2.270205 CGAGCCAGGAACCAGCAT 59.730 61.111 0.00 0.00 0.00 3.79
602 603 4.704833 GCGAGCCAGGAACCAGCA 62.705 66.667 0.00 0.00 0.00 4.41
604 605 4.069232 TCGCGAGCCAGGAACCAG 62.069 66.667 3.71 0.00 0.00 4.00
605 606 4.373116 GTCGCGAGCCAGGAACCA 62.373 66.667 10.24 0.00 0.00 3.67
606 607 3.876589 TTGTCGCGAGCCAGGAACC 62.877 63.158 10.24 0.00 0.00 3.62
607 608 1.298859 AATTGTCGCGAGCCAGGAAC 61.299 55.000 10.24 0.00 0.00 3.62
608 609 0.248012 TAATTGTCGCGAGCCAGGAA 59.752 50.000 10.24 0.00 0.00 3.36
609 610 0.248012 TTAATTGTCGCGAGCCAGGA 59.752 50.000 10.24 0.00 0.00 3.86
610 611 0.373716 GTTAATTGTCGCGAGCCAGG 59.626 55.000 10.24 0.00 0.00 4.45
611 612 1.075542 TGTTAATTGTCGCGAGCCAG 58.924 50.000 10.24 0.00 0.00 4.85
612 613 1.732941 ATGTTAATTGTCGCGAGCCA 58.267 45.000 10.24 0.91 0.00 4.75
613 614 2.221055 CCTATGTTAATTGTCGCGAGCC 59.779 50.000 10.24 0.00 0.00 4.70
614 615 2.864343 ACCTATGTTAATTGTCGCGAGC 59.136 45.455 10.24 5.27 0.00 5.03
615 616 3.245284 CCACCTATGTTAATTGTCGCGAG 59.755 47.826 10.24 0.00 0.00 5.03
616 617 3.191669 CCACCTATGTTAATTGTCGCGA 58.808 45.455 3.71 3.71 0.00 5.87
617 618 2.933906 ACCACCTATGTTAATTGTCGCG 59.066 45.455 0.00 0.00 0.00 5.87
618 619 3.936453 TCACCACCTATGTTAATTGTCGC 59.064 43.478 0.00 0.00 0.00 5.19
619 620 5.051039 CGATCACCACCTATGTTAATTGTCG 60.051 44.000 0.00 0.00 0.00 4.35
620 621 6.046593 TCGATCACCACCTATGTTAATTGTC 58.953 40.000 0.00 0.00 0.00 3.18
621 622 5.984725 TCGATCACCACCTATGTTAATTGT 58.015 37.500 0.00 0.00 0.00 2.71
622 623 5.050091 GCTCGATCACCACCTATGTTAATTG 60.050 44.000 0.00 0.00 0.00 2.32
623 624 5.057149 GCTCGATCACCACCTATGTTAATT 58.943 41.667 0.00 0.00 0.00 1.40
624 625 4.632153 GCTCGATCACCACCTATGTTAAT 58.368 43.478 0.00 0.00 0.00 1.40
625 626 3.490249 CGCTCGATCACCACCTATGTTAA 60.490 47.826 0.00 0.00 0.00 2.01
626 627 2.034179 CGCTCGATCACCACCTATGTTA 59.966 50.000 0.00 0.00 0.00 2.41
627 628 1.202417 CGCTCGATCACCACCTATGTT 60.202 52.381 0.00 0.00 0.00 2.71
628 629 0.385751 CGCTCGATCACCACCTATGT 59.614 55.000 0.00 0.00 0.00 2.29
629 630 0.319040 CCGCTCGATCACCACCTATG 60.319 60.000 0.00 0.00 0.00 2.23
630 631 0.755698 ACCGCTCGATCACCACCTAT 60.756 55.000 0.00 0.00 0.00 2.57
631 632 0.107066 TACCGCTCGATCACCACCTA 60.107 55.000 0.00 0.00 0.00 3.08
632 633 0.755698 ATACCGCTCGATCACCACCT 60.756 55.000 0.00 0.00 0.00 4.00
633 634 0.597637 CATACCGCTCGATCACCACC 60.598 60.000 0.00 0.00 0.00 4.61
634 635 1.215655 GCATACCGCTCGATCACCAC 61.216 60.000 0.00 0.00 37.77 4.16
635 636 1.067416 GCATACCGCTCGATCACCA 59.933 57.895 0.00 0.00 37.77 4.17
636 637 3.938112 GCATACCGCTCGATCACC 58.062 61.111 0.00 0.00 37.77 4.02
645 646 2.486982 TCGAGGATTAGTAGCATACCGC 59.513 50.000 0.00 0.00 44.47 5.68
646 647 3.119919 GGTCGAGGATTAGTAGCATACCG 60.120 52.174 0.00 0.00 44.47 4.02
647 648 3.193056 GGGTCGAGGATTAGTAGCATACC 59.807 52.174 0.00 0.00 44.47 2.73
648 649 3.119919 CGGGTCGAGGATTAGTAGCATAC 60.120 52.174 0.00 0.00 43.47 2.39
649 650 3.079578 CGGGTCGAGGATTAGTAGCATA 58.920 50.000 0.00 0.00 0.00 3.14
650 651 1.887198 CGGGTCGAGGATTAGTAGCAT 59.113 52.381 0.00 0.00 0.00 3.79
651 652 1.134007 TCGGGTCGAGGATTAGTAGCA 60.134 52.381 0.00 0.00 0.00 3.49
652 653 1.602311 TCGGGTCGAGGATTAGTAGC 58.398 55.000 0.00 0.00 0.00 3.58
653 654 4.201930 GCATATCGGGTCGAGGATTAGTAG 60.202 50.000 0.00 0.00 39.91 2.57
654 655 3.693085 GCATATCGGGTCGAGGATTAGTA 59.307 47.826 0.00 0.00 39.91 1.82
655 656 2.492484 GCATATCGGGTCGAGGATTAGT 59.508 50.000 0.00 0.00 39.91 2.24
656 657 2.755655 AGCATATCGGGTCGAGGATTAG 59.244 50.000 0.00 0.00 39.91 1.73
657 658 2.803956 AGCATATCGGGTCGAGGATTA 58.196 47.619 0.00 0.00 39.91 1.75
658 659 1.633774 AGCATATCGGGTCGAGGATT 58.366 50.000 0.00 0.00 39.91 3.01
659 660 2.093106 GTAGCATATCGGGTCGAGGAT 58.907 52.381 0.00 0.00 39.91 3.24
660 661 1.073444 AGTAGCATATCGGGTCGAGGA 59.927 52.381 0.00 0.00 39.91 3.71
661 662 1.535833 AGTAGCATATCGGGTCGAGG 58.464 55.000 0.00 0.00 39.91 4.63
662 663 2.814919 AGAAGTAGCATATCGGGTCGAG 59.185 50.000 0.00 0.00 39.91 4.04
663 664 2.860009 AGAAGTAGCATATCGGGTCGA 58.140 47.619 0.00 0.00 41.13 4.20
664 665 3.752222 ACTAGAAGTAGCATATCGGGTCG 59.248 47.826 0.00 0.00 0.00 4.79
665 666 4.760715 TCACTAGAAGTAGCATATCGGGTC 59.239 45.833 0.00 0.00 0.00 4.46
666 667 4.726583 TCACTAGAAGTAGCATATCGGGT 58.273 43.478 0.00 0.00 0.00 5.28
667 668 5.241949 AGTTCACTAGAAGTAGCATATCGGG 59.758 44.000 0.00 0.00 35.67 5.14
668 669 6.320494 AGTTCACTAGAAGTAGCATATCGG 57.680 41.667 0.00 0.00 35.67 4.18
708 709 9.283768 TGCAATTAACTCAGTTCATTCTTCTAA 57.716 29.630 0.00 0.00 0.00 2.10
709 710 8.721478 GTGCAATTAACTCAGTTCATTCTTCTA 58.279 33.333 0.00 0.00 0.00 2.10
710 711 7.229306 TGTGCAATTAACTCAGTTCATTCTTCT 59.771 33.333 0.00 0.00 0.00 2.85
711 712 7.362662 TGTGCAATTAACTCAGTTCATTCTTC 58.637 34.615 0.00 0.00 0.00 2.87
712 713 7.229306 TCTGTGCAATTAACTCAGTTCATTCTT 59.771 33.333 0.00 0.00 32.03 2.52
713 714 6.712095 TCTGTGCAATTAACTCAGTTCATTCT 59.288 34.615 0.00 0.00 32.03 2.40
714 715 6.902341 TCTGTGCAATTAACTCAGTTCATTC 58.098 36.000 0.00 0.00 32.03 2.67
715 716 6.882610 TCTGTGCAATTAACTCAGTTCATT 57.117 33.333 0.00 0.00 32.03 2.57
716 717 6.488006 ACTTCTGTGCAATTAACTCAGTTCAT 59.512 34.615 0.00 0.00 32.03 2.57
717 718 5.822519 ACTTCTGTGCAATTAACTCAGTTCA 59.177 36.000 0.00 0.00 32.03 3.18
718 719 6.305693 ACTTCTGTGCAATTAACTCAGTTC 57.694 37.500 0.00 0.00 32.03 3.01
719 720 6.204882 GGTACTTCTGTGCAATTAACTCAGTT 59.795 38.462 0.00 0.00 32.03 3.16
720 721 5.701290 GGTACTTCTGTGCAATTAACTCAGT 59.299 40.000 0.00 0.00 32.03 3.41
721 722 5.700832 TGGTACTTCTGTGCAATTAACTCAG 59.299 40.000 0.00 0.00 0.00 3.35
804 805 7.630242 TTTGCAAAAATTTGGACCAATGTTA 57.370 28.000 10.02 0.00 38.25 2.41
1213 1222 5.242838 ACCTAGCGAAATCAACCAAATCAAA 59.757 36.000 0.00 0.00 0.00 2.69
1671 1698 1.269206 ACAAAATCACTGCAGTTGCCG 60.269 47.619 18.94 6.04 41.18 5.69
2230 2257 7.030768 GTGATCTTCTCCTGACACTTAGTTAC 58.969 42.308 0.00 0.00 0.00 2.50
2251 2278 3.718723 ACTCTAGCTTCTCTTGGGTGAT 58.281 45.455 0.00 0.00 30.02 3.06
2812 2839 8.522830 CCAAGTTGTAATGGATCAAGTTGTAAT 58.477 33.333 17.90 0.00 45.58 1.89
2813 2840 7.523052 GCCAAGTTGTAATGGATCAAGTTGTAA 60.523 37.037 17.90 0.00 45.58 2.41
2814 2841 6.072175 GCCAAGTTGTAATGGATCAAGTTGTA 60.072 38.462 17.90 0.00 45.58 2.41
2815 2842 5.278957 GCCAAGTTGTAATGGATCAAGTTGT 60.279 40.000 17.90 0.00 45.58 3.32
2816 2843 5.047802 AGCCAAGTTGTAATGGATCAAGTTG 60.048 40.000 14.56 14.56 46.10 3.16
2817 2844 5.079643 AGCCAAGTTGTAATGGATCAAGTT 58.920 37.500 1.45 0.00 39.12 2.66
2818 2845 4.666512 AGCCAAGTTGTAATGGATCAAGT 58.333 39.130 1.45 0.00 39.12 3.16
2819 2846 5.647658 TGTAGCCAAGTTGTAATGGATCAAG 59.352 40.000 1.45 0.00 39.12 3.02
2820 2847 5.565509 TGTAGCCAAGTTGTAATGGATCAA 58.434 37.500 1.45 0.00 39.12 2.57
2821 2848 5.172687 TGTAGCCAAGTTGTAATGGATCA 57.827 39.130 1.45 0.00 39.12 2.92
2966 3068 4.937201 TCTGTCTCTGCAAACTCAACTA 57.063 40.909 0.00 0.00 0.00 2.24
3184 3286 3.488778 TTTGGCAGCATGGTGAATTTT 57.511 38.095 28.34 0.00 35.86 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.