Multiple sequence alignment - TraesCS5A01G063600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G063600 chr5A 100.000 3519 0 0 1 3519 69039245 69042763 0.000000e+00 6499.0
1 TraesCS5A01G063600 chr5A 97.975 1037 21 0 2483 3519 69063475 69064511 0.000000e+00 1799.0
2 TraesCS5A01G063600 chr5A 92.857 70 4 1 1642 1711 60128057 60127989 2.240000e-17 100.0
3 TraesCS5A01G063600 chr2A 96.505 1831 56 4 659 2482 351173226 351171397 0.000000e+00 3020.0
4 TraesCS5A01G063600 chr2A 97.318 1044 22 1 2482 3519 334955562 334956605 0.000000e+00 1768.0
5 TraesCS5A01G063600 chr2A 97.305 1039 27 1 2482 3519 284699801 284698763 0.000000e+00 1762.0
6 TraesCS5A01G063600 chr2A 97.206 1038 27 2 2483 3519 284679111 284678075 0.000000e+00 1755.0
7 TraesCS5A01G063600 chr2A 97.011 1037 28 3 2486 3519 229587169 229586133 0.000000e+00 1740.0
8 TraesCS5A01G063600 chr2A 96.724 1038 33 1 2483 3519 334968813 334969850 0.000000e+00 1727.0
9 TraesCS5A01G063600 chr2A 96.545 1042 31 5 2482 3519 229604193 229603153 0.000000e+00 1720.0
10 TraesCS5A01G063600 chr2A 92.371 367 23 2 2120 2482 39317573 39317208 5.210000e-143 518.0
11 TraesCS5A01G063600 chr2A 84.829 468 52 12 996 1456 588284796 588285251 1.490000e-123 453.0
12 TraesCS5A01G063600 chr2A 87.943 141 6 6 1799 1939 734106698 734106569 4.700000e-34 156.0
13 TraesCS5A01G063600 chr2A 86.957 138 11 3 659 791 588284456 588284591 7.870000e-32 148.0
14 TraesCS5A01G063600 chr2A 94.872 39 2 0 2098 2136 351171826 351171788 1.050000e-05 62.1
15 TraesCS5A01G063600 chr2A 100.000 31 0 0 1799 1829 734106529 734106559 1.360000e-04 58.4
16 TraesCS5A01G063600 chr4A 96.532 1038 35 1 2483 3519 496315133 496314096 0.000000e+00 1716.0
17 TraesCS5A01G063600 chr4A 87.023 524 54 7 840 1353 739160881 739161400 2.360000e-161 579.0
18 TraesCS5A01G063600 chr4A 92.916 367 20 3 2120 2482 49211358 49211722 2.410000e-146 529.0
19 TraesCS5A01G063600 chr1A 96.535 1039 33 3 2483 3519 421329145 421330182 0.000000e+00 1716.0
20 TraesCS5A01G063600 chr1A 92.350 366 24 2 2120 2482 42200561 42200197 5.210000e-143 518.0
21 TraesCS5A01G063600 chr1A 83.403 476 65 9 996 1463 102988534 102988065 2.510000e-116 429.0
22 TraesCS5A01G063600 chr1A 94.737 152 8 0 1799 1950 320336908 320336757 1.630000e-58 237.0
23 TraesCS5A01G063600 chr1A 88.506 174 20 0 791 964 102988703 102988530 9.900000e-51 211.0
24 TraesCS5A01G063600 chr7B 83.739 658 80 17 791 1432 687557802 687557156 6.500000e-167 597.0
25 TraesCS5A01G063600 chr7B 84.829 468 51 12 996 1456 512692637 512692183 1.490000e-123 453.0
26 TraesCS5A01G063600 chr7B 89.080 174 19 0 791 964 512692806 512692633 2.130000e-52 217.0
27 TraesCS5A01G063600 chr7B 92.701 137 9 1 1945 2081 667262823 667262958 2.770000e-46 196.0
28 TraesCS5A01G063600 chr7B 81.618 136 23 2 657 791 667261420 667261554 1.030000e-20 111.0
29 TraesCS5A01G063600 chr5B 83.661 661 81 17 788 1432 304277524 304278173 6.500000e-167 597.0
30 TraesCS5A01G063600 chr5B 93.931 346 19 2 1454 1798 642935007 642934663 4.030000e-144 521.0
31 TraesCS5A01G063600 chr5B 83.193 119 19 1 680 798 297060272 297060389 1.340000e-19 108.0
32 TraesCS5A01G063600 chr7A 82.879 660 82 21 791 1432 693711186 693710540 6.590000e-157 564.0
33 TraesCS5A01G063600 chr7A 91.892 370 25 3 2117 2482 625756797 625757165 2.420000e-141 512.0
34 TraesCS5A01G063600 chr7A 84.402 468 54 12 996 1456 238257728 238257273 3.220000e-120 442.0
35 TraesCS5A01G063600 chr7A 89.080 174 19 0 791 964 238257897 238257724 2.130000e-52 217.0
36 TraesCS5A01G063600 chr7A 89.437 142 13 2 1945 2085 509620015 509619875 1.000000e-40 178.0
37 TraesCS5A01G063600 chr7A 87.324 142 13 3 653 791 693711361 693711222 1.310000e-34 158.0
38 TraesCS5A01G063600 chr7A 86.525 141 12 3 656 791 238258071 238257933 7.870000e-32 148.0
39 TraesCS5A01G063600 chr1B 86.590 522 56 7 843 1354 102846927 102846410 6.590000e-157 564.0
40 TraesCS5A01G063600 chr3A 92.432 370 23 2 2117 2482 662403256 662403624 1.120000e-144 523.0
41 TraesCS5A01G063600 chr6B 92.162 370 24 2 2117 2482 658278112 658278480 5.210000e-143 518.0
42 TraesCS5A01G063600 chr6B 78.415 366 61 13 1 357 544643421 544643065 4.570000e-54 222.0
43 TraesCS5A01G063600 chr4B 91.613 310 22 1 2117 2422 559125484 559125793 3.250000e-115 425.0
44 TraesCS5A01G063600 chr3D 91.696 289 19 2 2198 2482 147608950 147609237 2.550000e-106 396.0
45 TraesCS5A01G063600 chr3D 90.226 133 13 0 1949 2081 369480652 369480784 1.300000e-39 174.0
46 TraesCS5A01G063600 chr3D 93.333 75 4 1 1642 1716 553237593 553237520 3.710000e-20 110.0
47 TraesCS5A01G063600 chr6A 78.261 368 58 16 1 357 503602954 503602598 2.130000e-52 217.0
48 TraesCS5A01G063600 chr6A 77.929 367 56 18 1 353 503499237 503498882 4.600000e-49 206.0
49 TraesCS5A01G063600 chr6A 89.130 138 12 3 1944 2081 595011425 595011559 6.040000e-38 169.0
50 TraesCS5A01G063600 chr6D 77.596 366 64 13 1 357 363015639 363015283 4.600000e-49 206.0
51 TraesCS5A01G063600 chr6D 89.855 138 13 1 1945 2082 199704868 199705004 3.610000e-40 176.0
52 TraesCS5A01G063600 chr4D 93.233 133 9 0 1949 2081 381564629 381564761 2.770000e-46 196.0
53 TraesCS5A01G063600 chr4D 89.542 153 5 4 1798 1950 502019547 502019406 2.160000e-42 183.0
54 TraesCS5A01G063600 chr2B 92.593 135 9 1 1945 2079 129267153 129267020 3.580000e-45 193.0
55 TraesCS5A01G063600 chr7D 90.977 133 12 0 1949 2081 583475858 583475726 2.790000e-41 180.0
56 TraesCS5A01G063600 chr3B 94.286 70 3 1 1642 1711 52183580 52183648 4.800000e-19 106.0
57 TraesCS5A01G063600 chr2D 92.000 75 5 1 1642 1716 378906609 378906536 1.730000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G063600 chr5A 69039245 69042763 3518 False 6499.00 6499 100.0000 1 3519 1 chr5A.!!$F1 3518
1 TraesCS5A01G063600 chr5A 69063475 69064511 1036 False 1799.00 1799 97.9750 2483 3519 1 chr5A.!!$F2 1036
2 TraesCS5A01G063600 chr2A 334955562 334956605 1043 False 1768.00 1768 97.3180 2482 3519 1 chr2A.!!$F1 1037
3 TraesCS5A01G063600 chr2A 284698763 284699801 1038 True 1762.00 1762 97.3050 2482 3519 1 chr2A.!!$R5 1037
4 TraesCS5A01G063600 chr2A 284678075 284679111 1036 True 1755.00 1755 97.2060 2483 3519 1 chr2A.!!$R4 1036
5 TraesCS5A01G063600 chr2A 229586133 229587169 1036 True 1740.00 1740 97.0110 2486 3519 1 chr2A.!!$R2 1033
6 TraesCS5A01G063600 chr2A 334968813 334969850 1037 False 1727.00 1727 96.7240 2483 3519 1 chr2A.!!$F2 1036
7 TraesCS5A01G063600 chr2A 229603153 229604193 1040 True 1720.00 1720 96.5450 2482 3519 1 chr2A.!!$R3 1037
8 TraesCS5A01G063600 chr2A 351171397 351173226 1829 True 1541.05 3020 95.6885 659 2482 2 chr2A.!!$R7 1823
9 TraesCS5A01G063600 chr2A 588284456 588285251 795 False 300.50 453 85.8930 659 1456 2 chr2A.!!$F4 797
10 TraesCS5A01G063600 chr4A 496314096 496315133 1037 True 1716.00 1716 96.5320 2483 3519 1 chr4A.!!$R1 1036
11 TraesCS5A01G063600 chr4A 739160881 739161400 519 False 579.00 579 87.0230 840 1353 1 chr4A.!!$F2 513
12 TraesCS5A01G063600 chr1A 421329145 421330182 1037 False 1716.00 1716 96.5350 2483 3519 1 chr1A.!!$F1 1036
13 TraesCS5A01G063600 chr1A 102988065 102988703 638 True 320.00 429 85.9545 791 1463 2 chr1A.!!$R3 672
14 TraesCS5A01G063600 chr7B 687557156 687557802 646 True 597.00 597 83.7390 791 1432 1 chr7B.!!$R1 641
15 TraesCS5A01G063600 chr7B 512692183 512692806 623 True 335.00 453 86.9545 791 1456 2 chr7B.!!$R2 665
16 TraesCS5A01G063600 chr5B 304277524 304278173 649 False 597.00 597 83.6610 788 1432 1 chr5B.!!$F2 644
17 TraesCS5A01G063600 chr7A 693710540 693711361 821 True 361.00 564 85.1015 653 1432 2 chr7A.!!$R3 779
18 TraesCS5A01G063600 chr7A 238257273 238258071 798 True 269.00 442 86.6690 656 1456 3 chr7A.!!$R2 800
19 TraesCS5A01G063600 chr1B 102846410 102846927 517 True 564.00 564 86.5900 843 1354 1 chr1B.!!$R1 511

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
481 482 0.108756 GGCTCGGCTTCGAACTAAGT 60.109 55.0 0.0 0.0 42.80 2.24 F
502 503 0.171455 CCTACACAGGTCAGTCGAGC 59.829 60.0 0.0 0.0 37.15 5.03 F
503 504 0.179187 CTACACAGGTCAGTCGAGCG 60.179 60.0 0.0 0.0 44.60 5.03 F
566 567 0.321919 TACGGACCTAGCGACACACT 60.322 55.0 0.0 0.0 0.00 3.55 F
2469 2665 0.395724 AATGACGGGGATGGAAAGGC 60.396 55.0 0.0 0.0 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1873 2063 0.250467 AGTGGCTGTGTTGCACCTAG 60.250 55.000 0.0 0.0 32.73 3.02 R
2465 2661 0.969149 TCAGACACGTCATCAGCCTT 59.031 50.000 0.0 0.0 0.00 4.35 R
2469 2665 2.156504 GCACTTTCAGACACGTCATCAG 59.843 50.000 0.0 0.0 0.00 2.90 R
2473 2669 2.361119 ACTAGCACTTTCAGACACGTCA 59.639 45.455 0.0 0.0 0.00 4.35 R
3349 3554 3.206964 TGCCGTGTGTGTTTGAAATCTA 58.793 40.909 0.0 0.0 0.00 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.379243 CTCGCCGGTGCAGAGGTT 62.379 66.667 11.05 0.00 35.73 3.50
23 24 4.680237 TCGCCGGTGCAGAGGTTG 62.680 66.667 11.05 3.13 37.32 3.77
24 25 4.680237 CGCCGGTGCAGAGGTTGA 62.680 66.667 0.00 0.00 37.32 3.18
25 26 2.743928 GCCGGTGCAGAGGTTGAG 60.744 66.667 1.90 0.00 37.47 3.02
26 27 2.743928 CCGGTGCAGAGGTTGAGC 60.744 66.667 0.00 0.00 0.00 4.26
27 28 2.031012 CGGTGCAGAGGTTGAGCA 59.969 61.111 0.00 0.00 35.63 4.26
28 29 2.031516 CGGTGCAGAGGTTGAGCAG 61.032 63.158 0.00 0.00 39.21 4.24
29 30 3.261933 GTGCAGAGGTTGAGCAGC 58.738 61.111 0.00 0.00 39.21 5.25
30 31 2.357881 TGCAGAGGTTGAGCAGCG 60.358 61.111 0.00 0.00 33.75 5.18
31 32 2.358003 GCAGAGGTTGAGCAGCGT 60.358 61.111 0.00 0.00 0.00 5.07
32 33 2.675056 GCAGAGGTTGAGCAGCGTG 61.675 63.158 0.00 0.00 0.00 5.34
33 34 1.301244 CAGAGGTTGAGCAGCGTGT 60.301 57.895 0.00 0.00 0.00 4.49
34 35 1.301244 AGAGGTTGAGCAGCGTGTG 60.301 57.895 0.00 0.00 0.00 3.82
80 81 4.043200 GCGAACAGCCACTTGCCC 62.043 66.667 0.00 0.00 42.71 5.36
81 82 2.281761 CGAACAGCCACTTGCCCT 60.282 61.111 0.00 0.00 42.71 5.19
82 83 2.328099 CGAACAGCCACTTGCCCTC 61.328 63.158 0.00 0.00 42.71 4.30
83 84 2.281761 AACAGCCACTTGCCCTCG 60.282 61.111 0.00 0.00 42.71 4.63
84 85 3.120086 AACAGCCACTTGCCCTCGT 62.120 57.895 0.00 0.00 42.71 4.18
85 86 1.764571 AACAGCCACTTGCCCTCGTA 61.765 55.000 0.00 0.00 42.71 3.43
86 87 1.448540 CAGCCACTTGCCCTCGTAG 60.449 63.158 0.00 0.00 42.71 3.51
87 88 2.125106 GCCACTTGCCCTCGTAGG 60.125 66.667 0.00 0.00 34.30 3.18
88 89 2.656069 GCCACTTGCCCTCGTAGGA 61.656 63.158 2.84 0.00 37.67 2.94
89 90 1.517832 CCACTTGCCCTCGTAGGAG 59.482 63.158 5.43 5.43 37.67 3.69
90 91 1.153549 CACTTGCCCTCGTAGGAGC 60.154 63.158 6.93 0.00 37.67 4.70
91 92 2.359967 ACTTGCCCTCGTAGGAGCC 61.360 63.158 6.93 1.27 37.67 4.70
92 93 3.432051 CTTGCCCTCGTAGGAGCCG 62.432 68.421 6.93 0.71 37.67 5.52
93 94 3.949885 TTGCCCTCGTAGGAGCCGA 62.950 63.158 6.93 0.00 37.67 5.54
94 95 3.145551 GCCCTCGTAGGAGCCGAA 61.146 66.667 6.93 0.00 37.67 4.30
95 96 3.121019 CCCTCGTAGGAGCCGAAG 58.879 66.667 6.93 0.00 37.67 3.79
96 97 1.453379 CCCTCGTAGGAGCCGAAGA 60.453 63.158 6.93 0.00 37.67 2.87
97 98 1.035932 CCCTCGTAGGAGCCGAAGAA 61.036 60.000 6.93 0.00 37.67 2.52
98 99 0.815734 CCTCGTAGGAGCCGAAGAAA 59.184 55.000 6.93 0.00 37.67 2.52
99 100 1.469423 CCTCGTAGGAGCCGAAGAAAC 60.469 57.143 6.93 0.00 37.67 2.78
100 101 0.169672 TCGTAGGAGCCGAAGAAACG 59.830 55.000 0.00 0.00 0.00 3.60
129 130 3.699894 CGTCCTCAGGCAGCAGGT 61.700 66.667 0.00 0.00 0.00 4.00
130 131 2.267324 GTCCTCAGGCAGCAGGTC 59.733 66.667 0.00 0.00 0.00 3.85
131 132 3.005539 TCCTCAGGCAGCAGGTCC 61.006 66.667 0.00 0.00 0.00 4.46
132 133 3.324930 CCTCAGGCAGCAGGTCCA 61.325 66.667 0.00 0.00 0.00 4.02
133 134 2.268280 CTCAGGCAGCAGGTCCAG 59.732 66.667 0.00 0.00 0.00 3.86
134 135 3.324930 TCAGGCAGCAGGTCCAGG 61.325 66.667 0.00 0.00 0.00 4.45
135 136 3.644606 CAGGCAGCAGGTCCAGGT 61.645 66.667 0.00 0.00 0.00 4.00
136 137 2.856000 AGGCAGCAGGTCCAGGTT 60.856 61.111 0.00 0.00 0.00 3.50
137 138 2.674380 GGCAGCAGGTCCAGGTTG 60.674 66.667 0.00 0.00 0.00 3.77
138 139 2.113986 GCAGCAGGTCCAGGTTGT 59.886 61.111 0.00 0.00 0.00 3.32
139 140 2.263741 GCAGCAGGTCCAGGTTGTG 61.264 63.158 0.00 0.00 0.00 3.33
168 169 4.519437 CGCTCAGGATGCAGCCGA 62.519 66.667 16.75 14.78 36.39 5.54
169 170 2.124983 GCTCAGGATGCAGCCGAA 60.125 61.111 16.75 6.78 34.59 4.30
170 171 2.467826 GCTCAGGATGCAGCCGAAC 61.468 63.158 16.75 7.86 34.59 3.95
171 172 2.125552 TCAGGATGCAGCCGAACG 60.126 61.111 16.75 5.87 34.76 3.95
172 173 2.125552 CAGGATGCAGCCGAACGA 60.126 61.111 16.75 0.00 0.00 3.85
173 174 2.125512 AGGATGCAGCCGAACGAC 60.126 61.111 16.75 0.00 0.00 4.34
174 175 3.554692 GGATGCAGCCGAACGACG 61.555 66.667 4.62 0.00 42.18 5.12
207 208 3.092511 GCATGAGGAGCCAGGGGA 61.093 66.667 0.00 0.00 0.00 4.81
208 209 3.117452 GCATGAGGAGCCAGGGGAG 62.117 68.421 0.00 0.00 0.00 4.30
209 210 2.771762 ATGAGGAGCCAGGGGAGC 60.772 66.667 0.00 0.00 0.00 4.70
210 211 3.647921 ATGAGGAGCCAGGGGAGCA 62.648 63.158 0.00 0.00 0.00 4.26
211 212 3.791586 GAGGAGCCAGGGGAGCAC 61.792 72.222 0.00 0.00 0.00 4.40
214 215 3.415087 GAGCCAGGGGAGCACCAT 61.415 66.667 1.58 0.00 42.91 3.55
219 220 3.415087 AGGGGAGCACCATGAGGC 61.415 66.667 1.58 0.00 42.91 4.70
220 221 4.864334 GGGGAGCACCATGAGGCG 62.864 72.222 1.58 0.00 42.91 5.52
253 254 3.276091 CACCGCTTTGTGCCACGA 61.276 61.111 0.00 0.00 38.78 4.35
254 255 3.276846 ACCGCTTTGTGCCACGAC 61.277 61.111 0.00 0.00 38.78 4.34
255 256 2.972505 CCGCTTTGTGCCACGACT 60.973 61.111 0.00 0.00 38.78 4.18
256 257 2.542907 CCGCTTTGTGCCACGACTT 61.543 57.895 0.00 0.00 38.78 3.01
257 258 1.369209 CGCTTTGTGCCACGACTTG 60.369 57.895 0.00 0.00 38.78 3.16
258 259 1.658409 GCTTTGTGCCACGACTTGC 60.658 57.895 0.00 0.00 35.15 4.01
259 260 1.726865 CTTTGTGCCACGACTTGCA 59.273 52.632 0.00 0.00 34.54 4.08
260 261 0.317269 CTTTGTGCCACGACTTGCAG 60.317 55.000 0.00 0.00 38.34 4.41
261 262 2.335052 TTTGTGCCACGACTTGCAGC 62.335 55.000 0.00 0.00 38.34 5.25
262 263 3.279116 GTGCCACGACTTGCAGCA 61.279 61.111 0.00 0.00 38.34 4.41
263 264 2.974148 TGCCACGACTTGCAGCAG 60.974 61.111 0.00 0.00 32.77 4.24
264 265 3.730761 GCCACGACTTGCAGCAGG 61.731 66.667 2.26 2.26 0.00 4.85
265 266 3.730761 CCACGACTTGCAGCAGGC 61.731 66.667 4.01 0.00 45.13 4.85
275 276 2.898840 CAGCAGGCGCCCATGTAG 60.899 66.667 26.15 8.89 39.83 2.74
276 277 3.083349 AGCAGGCGCCCATGTAGA 61.083 61.111 26.15 0.00 39.83 2.59
277 278 2.897350 GCAGGCGCCCATGTAGAC 60.897 66.667 26.15 0.00 0.00 2.59
278 279 2.586079 CAGGCGCCCATGTAGACG 60.586 66.667 26.15 0.00 0.00 4.18
279 280 3.849951 AGGCGCCCATGTAGACGG 61.850 66.667 26.15 0.00 0.00 4.79
280 281 4.157120 GGCGCCCATGTAGACGGT 62.157 66.667 18.11 0.00 0.00 4.83
281 282 2.890474 GCGCCCATGTAGACGGTG 60.890 66.667 0.00 0.00 0.00 4.94
282 283 2.577059 CGCCCATGTAGACGGTGT 59.423 61.111 0.00 0.00 0.00 4.16
283 284 1.518572 CGCCCATGTAGACGGTGTC 60.519 63.158 0.00 0.00 0.00 3.67
284 285 1.518572 GCCCATGTAGACGGTGTCG 60.519 63.158 0.00 0.00 37.67 4.35
285 286 1.940883 GCCCATGTAGACGGTGTCGA 61.941 60.000 0.00 0.00 37.67 4.20
286 287 0.744874 CCCATGTAGACGGTGTCGAT 59.255 55.000 0.00 0.00 37.67 3.59
287 288 1.536072 CCCATGTAGACGGTGTCGATG 60.536 57.143 0.00 0.00 37.67 3.84
288 289 1.536072 CCATGTAGACGGTGTCGATGG 60.536 57.143 9.67 9.67 37.67 3.51
289 290 0.744874 ATGTAGACGGTGTCGATGGG 59.255 55.000 0.00 0.00 37.67 4.00
290 291 1.317431 TGTAGACGGTGTCGATGGGG 61.317 60.000 0.00 0.00 37.67 4.96
291 292 2.420568 TAGACGGTGTCGATGGGGC 61.421 63.158 0.00 0.00 37.67 5.80
292 293 4.077184 GACGGTGTCGATGGGGCA 62.077 66.667 0.00 0.00 40.11 5.36
293 294 3.599285 GACGGTGTCGATGGGGCAA 62.599 63.158 0.00 0.00 40.11 4.52
294 295 2.819595 CGGTGTCGATGGGGCAAG 60.820 66.667 0.00 0.00 39.00 4.01
295 296 2.438434 GGTGTCGATGGGGCAAGG 60.438 66.667 0.00 0.00 0.00 3.61
296 297 2.351276 GTGTCGATGGGGCAAGGT 59.649 61.111 0.00 0.00 0.00 3.50
297 298 1.600107 GTGTCGATGGGGCAAGGTA 59.400 57.895 0.00 0.00 0.00 3.08
298 299 0.462047 GTGTCGATGGGGCAAGGTAG 60.462 60.000 0.00 0.00 0.00 3.18
299 300 1.146263 GTCGATGGGGCAAGGTAGG 59.854 63.158 0.00 0.00 0.00 3.18
300 301 2.203209 CGATGGGGCAAGGTAGGC 60.203 66.667 0.00 0.00 0.00 3.93
301 302 2.203209 GATGGGGCAAGGTAGGCG 60.203 66.667 0.00 0.00 34.40 5.52
302 303 3.774599 GATGGGGCAAGGTAGGCGG 62.775 68.421 0.00 0.00 34.40 6.13
306 307 4.426313 GGCAAGGTAGGCGGCCTT 62.426 66.667 29.02 6.32 46.39 4.35
309 310 2.609610 AAGGTAGGCGGCCTTGGA 60.610 61.111 29.02 6.32 44.01 3.53
310 311 2.001269 AAGGTAGGCGGCCTTGGAT 61.001 57.895 29.02 9.05 44.01 3.41
311 312 2.203209 GGTAGGCGGCCTTGGATG 60.203 66.667 29.02 0.00 34.61 3.51
312 313 2.902343 GTAGGCGGCCTTGGATGC 60.902 66.667 29.02 1.60 34.61 3.91
313 314 3.407083 TAGGCGGCCTTGGATGCA 61.407 61.111 29.02 3.66 34.61 3.96
314 315 2.756042 TAGGCGGCCTTGGATGCAT 61.756 57.895 29.02 0.00 34.61 3.96
315 316 2.680974 TAGGCGGCCTTGGATGCATC 62.681 60.000 29.02 18.81 34.61 3.91
316 317 3.957535 GCGGCCTTGGATGCATCG 61.958 66.667 20.15 8.86 0.00 3.84
317 318 3.282157 CGGCCTTGGATGCATCGG 61.282 66.667 20.15 16.36 0.00 4.18
318 319 2.192979 GGCCTTGGATGCATCGGA 59.807 61.111 20.15 10.17 0.00 4.55
319 320 1.895707 GGCCTTGGATGCATCGGAG 60.896 63.158 20.15 18.20 0.00 4.63
320 321 1.895707 GCCTTGGATGCATCGGAGG 60.896 63.158 29.14 29.14 34.54 4.30
321 322 1.832219 CCTTGGATGCATCGGAGGA 59.168 57.895 29.44 11.67 33.76 3.71
322 323 0.399454 CCTTGGATGCATCGGAGGAT 59.601 55.000 29.44 0.00 33.76 3.24
336 337 2.507944 GGATGTCATCCGGCAGCT 59.492 61.111 16.15 0.00 40.13 4.24
337 338 1.596477 GGATGTCATCCGGCAGCTC 60.596 63.158 16.15 0.00 40.13 4.09
338 339 1.144716 GATGTCATCCGGCAGCTCA 59.855 57.895 0.00 0.00 0.00 4.26
339 340 0.250209 GATGTCATCCGGCAGCTCAT 60.250 55.000 0.00 0.00 0.00 2.90
340 341 0.250209 ATGTCATCCGGCAGCTCATC 60.250 55.000 0.00 0.00 0.00 2.92
341 342 1.596477 GTCATCCGGCAGCTCATCC 60.596 63.158 0.00 0.00 0.00 3.51
342 343 2.281345 CATCCGGCAGCTCATCCC 60.281 66.667 0.00 0.00 0.00 3.85
343 344 2.769621 ATCCGGCAGCTCATCCCA 60.770 61.111 0.00 0.00 0.00 4.37
344 345 2.815945 ATCCGGCAGCTCATCCCAG 61.816 63.158 0.00 0.00 0.00 4.45
346 347 4.478371 CGGCAGCTCATCCCAGCA 62.478 66.667 0.00 0.00 42.40 4.41
347 348 2.827642 GGCAGCTCATCCCAGCAC 60.828 66.667 0.00 0.00 42.40 4.40
348 349 3.200593 GCAGCTCATCCCAGCACG 61.201 66.667 0.00 0.00 42.40 5.34
349 350 3.200593 CAGCTCATCCCAGCACGC 61.201 66.667 0.00 0.00 42.40 5.34
350 351 4.479993 AGCTCATCCCAGCACGCC 62.480 66.667 0.00 0.00 42.40 5.68
370 371 2.110213 GGCCGCCATGGACGAATA 59.890 61.111 24.22 0.00 42.00 1.75
371 372 1.525077 GGCCGCCATGGACGAATAA 60.525 57.895 24.22 0.00 42.00 1.40
372 373 1.647084 GCCGCCATGGACGAATAAC 59.353 57.895 24.22 8.94 42.00 1.89
373 374 2.101209 GCCGCCATGGACGAATAACG 62.101 60.000 24.22 12.40 42.00 3.18
392 393 1.381100 CGTACTACGTCAAAGCACACG 59.619 52.381 0.00 0.00 41.90 4.49
393 394 1.123756 GTACTACGTCAAAGCACACGC 59.876 52.381 0.00 0.00 39.73 5.34
394 395 1.127817 CTACGTCAAAGCACACGCG 59.872 57.895 3.53 3.53 45.49 6.01
395 396 2.210524 CTACGTCAAAGCACACGCGG 62.211 60.000 12.47 1.27 45.49 6.46
396 397 4.368808 CGTCAAAGCACACGCGGG 62.369 66.667 6.92 6.92 45.49 6.13
397 398 2.970324 GTCAAAGCACACGCGGGA 60.970 61.111 19.19 0.00 45.49 5.14
398 399 2.031919 TCAAAGCACACGCGGGAT 59.968 55.556 19.19 0.00 45.49 3.85
399 400 2.032634 TCAAAGCACACGCGGGATC 61.033 57.895 19.19 5.82 45.49 3.36
400 401 2.034879 CAAAGCACACGCGGGATCT 61.035 57.895 19.19 8.59 45.49 2.75
401 402 2.034879 AAAGCACACGCGGGATCTG 61.035 57.895 19.19 3.56 45.49 2.90
402 403 3.958147 AAGCACACGCGGGATCTGG 62.958 63.158 19.19 0.00 45.49 3.86
403 404 4.760047 GCACACGCGGGATCTGGT 62.760 66.667 19.19 0.00 0.00 4.00
404 405 2.509336 CACACGCGGGATCTGGTC 60.509 66.667 19.19 0.00 0.00 4.02
405 406 2.680352 ACACGCGGGATCTGGTCT 60.680 61.111 19.19 0.00 0.00 3.85
406 407 2.105128 CACGCGGGATCTGGTCTC 59.895 66.667 12.47 0.00 0.00 3.36
407 408 3.148279 ACGCGGGATCTGGTCTCC 61.148 66.667 12.47 0.00 0.00 3.71
414 415 0.543749 GGATCTGGTCTCCCAACAGG 59.456 60.000 0.00 0.00 41.27 4.00
415 416 1.280457 GATCTGGTCTCCCAACAGGT 58.720 55.000 0.00 0.00 41.27 4.00
416 417 1.208293 GATCTGGTCTCCCAACAGGTC 59.792 57.143 0.00 0.00 41.27 3.85
417 418 0.191064 TCTGGTCTCCCAACAGGTCT 59.809 55.000 0.00 0.00 41.27 3.85
418 419 1.059913 CTGGTCTCCCAACAGGTCTT 58.940 55.000 0.00 0.00 41.27 3.01
419 420 0.764890 TGGTCTCCCAACAGGTCTTG 59.235 55.000 0.00 0.00 37.98 3.02
420 421 0.606673 GGTCTCCCAACAGGTCTTGC 60.607 60.000 0.00 0.00 36.75 4.01
421 422 0.606673 GTCTCCCAACAGGTCTTGCC 60.607 60.000 0.00 0.00 36.75 4.52
422 423 1.303643 CTCCCAACAGGTCTTGCCC 60.304 63.158 0.00 0.00 38.26 5.36
423 424 1.774217 TCCCAACAGGTCTTGCCCT 60.774 57.895 0.00 0.00 38.26 5.19
428 429 2.046892 CAGGTCTTGCCCTGGTCG 60.047 66.667 0.00 0.00 46.89 4.79
429 430 4.021925 AGGTCTTGCCCTGGTCGC 62.022 66.667 0.00 0.00 38.26 5.19
430 431 4.329545 GGTCTTGCCCTGGTCGCA 62.330 66.667 0.00 0.00 0.00 5.10
431 432 2.045926 GTCTTGCCCTGGTCGCAT 60.046 61.111 0.00 0.00 35.83 4.73
432 433 1.220749 GTCTTGCCCTGGTCGCATA 59.779 57.895 0.00 0.00 35.83 3.14
433 434 0.179045 GTCTTGCCCTGGTCGCATAT 60.179 55.000 0.00 0.00 35.83 1.78
434 435 1.070134 GTCTTGCCCTGGTCGCATATA 59.930 52.381 0.00 0.00 35.83 0.86
435 436 1.977854 TCTTGCCCTGGTCGCATATAT 59.022 47.619 0.00 0.00 35.83 0.86
436 437 3.056107 GTCTTGCCCTGGTCGCATATATA 60.056 47.826 0.00 0.00 35.83 0.86
437 438 3.056107 TCTTGCCCTGGTCGCATATATAC 60.056 47.826 0.00 0.00 35.83 1.47
438 439 2.252714 TGCCCTGGTCGCATATATACA 58.747 47.619 0.00 0.00 0.00 2.29
439 440 2.233676 TGCCCTGGTCGCATATATACAG 59.766 50.000 0.00 0.00 0.00 2.74
440 441 2.893637 CCCTGGTCGCATATATACAGC 58.106 52.381 0.00 0.06 0.00 4.40
441 442 2.233676 CCCTGGTCGCATATATACAGCA 59.766 50.000 9.05 0.00 0.00 4.41
442 443 3.118629 CCCTGGTCGCATATATACAGCAT 60.119 47.826 9.05 0.00 0.00 3.79
443 444 3.867493 CCTGGTCGCATATATACAGCATG 59.133 47.826 9.05 0.00 46.00 4.06
459 460 4.486090 CAGCATGTAGTACGACTTGAAGT 58.514 43.478 21.07 0.00 0.00 3.01
460 461 4.923871 CAGCATGTAGTACGACTTGAAGTT 59.076 41.667 21.07 5.15 0.00 2.66
461 462 4.923871 AGCATGTAGTACGACTTGAAGTTG 59.076 41.667 21.07 10.95 35.70 3.16
462 463 4.091509 GCATGTAGTACGACTTGAAGTTGG 59.908 45.833 21.07 6.65 33.85 3.77
463 464 4.247267 TGTAGTACGACTTGAAGTTGGG 57.753 45.455 16.43 4.29 33.85 4.12
464 465 2.165319 AGTACGACTTGAAGTTGGGC 57.835 50.000 16.43 8.62 33.85 5.36
465 466 1.692519 AGTACGACTTGAAGTTGGGCT 59.307 47.619 16.43 10.55 33.85 5.19
466 467 2.067013 GTACGACTTGAAGTTGGGCTC 58.933 52.381 16.43 1.24 33.85 4.70
467 468 0.600255 ACGACTTGAAGTTGGGCTCG 60.600 55.000 16.43 8.65 33.85 5.03
468 469 1.291877 CGACTTGAAGTTGGGCTCGG 61.292 60.000 4.61 0.00 0.00 4.63
469 470 1.578206 GACTTGAAGTTGGGCTCGGC 61.578 60.000 0.00 0.00 0.00 5.54
470 471 1.302832 CTTGAAGTTGGGCTCGGCT 60.303 57.895 0.00 0.00 0.00 5.52
471 472 0.890996 CTTGAAGTTGGGCTCGGCTT 60.891 55.000 0.00 0.00 0.00 4.35
472 473 0.889186 TTGAAGTTGGGCTCGGCTTC 60.889 55.000 11.63 11.63 38.17 3.86
473 474 2.358737 AAGTTGGGCTCGGCTTCG 60.359 61.111 0.00 0.00 0.00 3.79
474 475 2.781595 GAAGTTGGGCTCGGCTTCGA 62.782 60.000 4.52 0.00 41.01 3.71
475 476 2.358247 GTTGGGCTCGGCTTCGAA 60.358 61.111 0.00 0.00 42.80 3.71
476 477 2.358247 TTGGGCTCGGCTTCGAAC 60.358 61.111 0.00 0.00 42.80 3.95
477 478 2.879233 TTGGGCTCGGCTTCGAACT 61.879 57.895 0.00 0.00 42.80 3.01
478 479 1.537814 TTGGGCTCGGCTTCGAACTA 61.538 55.000 0.00 0.00 42.80 2.24
479 480 1.217244 GGGCTCGGCTTCGAACTAA 59.783 57.895 0.00 0.00 42.80 2.24
480 481 0.806492 GGGCTCGGCTTCGAACTAAG 60.806 60.000 0.00 0.00 42.80 2.18
481 482 0.108756 GGCTCGGCTTCGAACTAAGT 60.109 55.000 0.00 0.00 42.80 2.24
482 483 1.672145 GGCTCGGCTTCGAACTAAGTT 60.672 52.381 0.00 0.00 42.80 2.66
483 484 1.654602 GCTCGGCTTCGAACTAAGTTC 59.345 52.381 0.00 0.00 42.80 3.01
484 485 2.260481 CTCGGCTTCGAACTAAGTTCC 58.740 52.381 0.00 0.00 42.80 3.62
485 486 1.891150 TCGGCTTCGAACTAAGTTCCT 59.109 47.619 0.00 0.00 39.14 3.36
486 487 3.084039 TCGGCTTCGAACTAAGTTCCTA 58.916 45.455 0.00 0.00 39.14 2.94
487 488 3.119708 TCGGCTTCGAACTAAGTTCCTAC 60.120 47.826 0.00 0.00 39.14 3.18
488 489 3.366679 CGGCTTCGAACTAAGTTCCTACA 60.367 47.826 0.00 0.00 39.14 2.74
489 490 3.925299 GGCTTCGAACTAAGTTCCTACAC 59.075 47.826 0.00 0.00 39.14 2.90
490 491 4.553323 GCTTCGAACTAAGTTCCTACACA 58.447 43.478 0.00 0.00 39.14 3.72
491 492 4.621886 GCTTCGAACTAAGTTCCTACACAG 59.378 45.833 0.00 0.00 39.14 3.66
492 493 4.778534 TCGAACTAAGTTCCTACACAGG 57.221 45.455 0.00 0.00 44.17 4.00
493 494 4.147321 TCGAACTAAGTTCCTACACAGGT 58.853 43.478 0.00 0.00 43.18 4.00
494 495 4.217118 TCGAACTAAGTTCCTACACAGGTC 59.783 45.833 0.00 0.00 43.18 3.85
495 496 4.022589 CGAACTAAGTTCCTACACAGGTCA 60.023 45.833 0.00 0.00 43.18 4.02
496 497 5.470047 AACTAAGTTCCTACACAGGTCAG 57.530 43.478 0.00 0.00 43.18 3.51
497 498 4.481072 ACTAAGTTCCTACACAGGTCAGT 58.519 43.478 0.00 0.00 43.18 3.41
498 499 4.523558 ACTAAGTTCCTACACAGGTCAGTC 59.476 45.833 0.00 0.00 43.18 3.51
499 500 1.887198 AGTTCCTACACAGGTCAGTCG 59.113 52.381 0.00 0.00 43.18 4.18
500 501 1.884579 GTTCCTACACAGGTCAGTCGA 59.115 52.381 0.00 0.00 43.18 4.20
501 502 1.822506 TCCTACACAGGTCAGTCGAG 58.177 55.000 0.00 0.00 43.18 4.04
502 503 0.171455 CCTACACAGGTCAGTCGAGC 59.829 60.000 0.00 0.00 37.15 5.03
503 504 0.179187 CTACACAGGTCAGTCGAGCG 60.179 60.000 0.00 0.00 44.60 5.03
504 505 0.887836 TACACAGGTCAGTCGAGCGT 60.888 55.000 0.00 0.00 44.60 5.07
505 506 1.442857 CACAGGTCAGTCGAGCGTC 60.443 63.158 0.00 0.00 44.60 5.19
506 507 1.601197 ACAGGTCAGTCGAGCGTCT 60.601 57.895 0.00 0.00 44.60 4.18
507 508 1.173444 ACAGGTCAGTCGAGCGTCTT 61.173 55.000 0.00 0.00 44.60 3.01
508 509 0.803117 CAGGTCAGTCGAGCGTCTTA 59.197 55.000 0.00 0.00 44.60 2.10
509 510 0.803740 AGGTCAGTCGAGCGTCTTAC 59.196 55.000 0.00 0.00 44.60 2.34
510 511 0.520404 GGTCAGTCGAGCGTCTTACA 59.480 55.000 0.00 0.00 0.00 2.41
511 512 1.604396 GTCAGTCGAGCGTCTTACAC 58.396 55.000 0.00 0.00 0.00 2.90
512 513 1.069432 GTCAGTCGAGCGTCTTACACA 60.069 52.381 0.00 0.00 0.00 3.72
513 514 1.069432 TCAGTCGAGCGTCTTACACAC 60.069 52.381 0.00 0.00 0.00 3.82
514 515 1.069159 CAGTCGAGCGTCTTACACACT 60.069 52.381 0.00 0.00 0.00 3.55
515 516 1.607628 AGTCGAGCGTCTTACACACTT 59.392 47.619 0.00 0.00 0.00 3.16
516 517 2.810274 AGTCGAGCGTCTTACACACTTA 59.190 45.455 0.00 0.00 0.00 2.24
517 518 2.907392 GTCGAGCGTCTTACACACTTAC 59.093 50.000 0.00 0.00 0.00 2.34
518 519 1.903139 CGAGCGTCTTACACACTTACG 59.097 52.381 0.00 0.00 36.67 3.18
519 520 2.411935 CGAGCGTCTTACACACTTACGA 60.412 50.000 0.00 0.00 35.66 3.43
520 521 3.558505 GAGCGTCTTACACACTTACGAA 58.441 45.455 0.00 0.00 35.66 3.85
521 522 4.164294 GAGCGTCTTACACACTTACGAAT 58.836 43.478 0.00 0.00 35.66 3.34
522 523 5.300969 AGCGTCTTACACACTTACGAATA 57.699 39.130 0.00 0.00 35.66 1.75
523 524 5.888105 AGCGTCTTACACACTTACGAATAT 58.112 37.500 0.00 0.00 35.66 1.28
524 525 5.970023 AGCGTCTTACACACTTACGAATATC 59.030 40.000 0.00 0.00 35.66 1.63
525 526 5.970023 GCGTCTTACACACTTACGAATATCT 59.030 40.000 0.00 0.00 35.66 1.98
526 527 6.471519 GCGTCTTACACACTTACGAATATCTT 59.528 38.462 0.00 0.00 35.66 2.40
527 528 7.008992 GCGTCTTACACACTTACGAATATCTTT 59.991 37.037 0.00 0.00 35.66 2.52
528 529 8.857216 CGTCTTACACACTTACGAATATCTTTT 58.143 33.333 0.00 0.00 35.66 2.27
532 533 7.829378 ACACACTTACGAATATCTTTTCTCC 57.171 36.000 0.00 0.00 0.00 3.71
533 534 7.383687 ACACACTTACGAATATCTTTTCTCCA 58.616 34.615 0.00 0.00 0.00 3.86
534 535 7.876068 ACACACTTACGAATATCTTTTCTCCAA 59.124 33.333 0.00 0.00 0.00 3.53
535 536 8.383619 CACACTTACGAATATCTTTTCTCCAAG 58.616 37.037 0.00 0.00 0.00 3.61
536 537 7.549488 ACACTTACGAATATCTTTTCTCCAAGG 59.451 37.037 0.00 0.00 0.00 3.61
537 538 7.549488 CACTTACGAATATCTTTTCTCCAAGGT 59.451 37.037 0.00 0.00 0.00 3.50
538 539 7.764901 ACTTACGAATATCTTTTCTCCAAGGTC 59.235 37.037 0.00 0.00 0.00 3.85
539 540 5.109903 ACGAATATCTTTTCTCCAAGGTCG 58.890 41.667 0.00 0.00 0.00 4.79
540 541 5.109903 CGAATATCTTTTCTCCAAGGTCGT 58.890 41.667 0.00 0.00 0.00 4.34
541 542 5.581085 CGAATATCTTTTCTCCAAGGTCGTT 59.419 40.000 0.00 0.00 0.00 3.85
542 543 6.755141 CGAATATCTTTTCTCCAAGGTCGTTA 59.245 38.462 0.00 0.00 0.00 3.18
543 544 7.254017 CGAATATCTTTTCTCCAAGGTCGTTAC 60.254 40.741 0.00 0.00 0.00 2.50
544 545 3.645884 TCTTTTCTCCAAGGTCGTTACG 58.354 45.455 0.00 0.00 0.00 3.18
545 546 3.318839 TCTTTTCTCCAAGGTCGTTACGA 59.681 43.478 2.33 2.33 0.00 3.43
546 547 3.731652 TTTCTCCAAGGTCGTTACGAA 57.268 42.857 9.65 0.00 37.72 3.85
547 548 3.947910 TTCTCCAAGGTCGTTACGAAT 57.052 42.857 9.65 0.00 37.72 3.34
548 549 5.389859 TTTCTCCAAGGTCGTTACGAATA 57.610 39.130 9.65 0.00 37.72 1.75
549 550 4.361451 TCTCCAAGGTCGTTACGAATAC 57.639 45.455 9.65 3.06 37.72 1.89
550 551 3.103738 CTCCAAGGTCGTTACGAATACG 58.896 50.000 9.65 0.00 45.75 3.06
551 552 2.159393 TCCAAGGTCGTTACGAATACGG 60.159 50.000 9.65 8.51 44.46 4.02
552 553 2.159393 CCAAGGTCGTTACGAATACGGA 60.159 50.000 9.65 0.00 44.46 4.69
553 554 2.832672 AGGTCGTTACGAATACGGAC 57.167 50.000 9.65 0.00 44.46 4.79
554 555 1.401905 AGGTCGTTACGAATACGGACC 59.598 52.381 9.65 5.17 44.46 4.46
555 556 1.401905 GGTCGTTACGAATACGGACCT 59.598 52.381 9.65 0.00 44.46 3.85
556 557 2.612212 GGTCGTTACGAATACGGACCTA 59.388 50.000 9.65 0.00 44.46 3.08
557 558 3.303395 GGTCGTTACGAATACGGACCTAG 60.303 52.174 9.65 0.00 44.46 3.02
558 559 2.287915 TCGTTACGAATACGGACCTAGC 59.712 50.000 4.50 0.00 44.46 3.42
559 560 2.644078 GTTACGAATACGGACCTAGCG 58.356 52.381 0.00 0.00 44.46 4.26
560 561 2.238942 TACGAATACGGACCTAGCGA 57.761 50.000 0.00 0.00 44.46 4.93
561 562 0.659957 ACGAATACGGACCTAGCGAC 59.340 55.000 0.00 0.00 44.46 5.19
562 563 0.659427 CGAATACGGACCTAGCGACA 59.341 55.000 0.00 0.00 35.72 4.35
563 564 1.596464 CGAATACGGACCTAGCGACAC 60.596 57.143 0.00 0.00 35.72 3.67
564 565 1.402968 GAATACGGACCTAGCGACACA 59.597 52.381 0.00 0.00 0.00 3.72
565 566 0.737219 ATACGGACCTAGCGACACAC 59.263 55.000 0.00 0.00 0.00 3.82
566 567 0.321919 TACGGACCTAGCGACACACT 60.322 55.000 0.00 0.00 0.00 3.55
567 568 1.136984 CGGACCTAGCGACACACTC 59.863 63.158 0.00 0.00 0.00 3.51
568 569 1.583495 CGGACCTAGCGACACACTCA 61.583 60.000 0.00 0.00 0.00 3.41
569 570 0.601558 GGACCTAGCGACACACTCAA 59.398 55.000 0.00 0.00 0.00 3.02
570 571 1.402984 GGACCTAGCGACACACTCAAG 60.403 57.143 0.00 0.00 0.00 3.02
571 572 1.540267 GACCTAGCGACACACTCAAGA 59.460 52.381 0.00 0.00 0.00 3.02
572 573 1.269998 ACCTAGCGACACACTCAAGAC 59.730 52.381 0.00 0.00 0.00 3.01
573 574 1.542030 CCTAGCGACACACTCAAGACT 59.458 52.381 0.00 0.00 0.00 3.24
574 575 2.029828 CCTAGCGACACACTCAAGACTT 60.030 50.000 0.00 0.00 0.00 3.01
575 576 3.190744 CCTAGCGACACACTCAAGACTTA 59.809 47.826 0.00 0.00 0.00 2.24
576 577 3.728076 AGCGACACACTCAAGACTTAA 57.272 42.857 0.00 0.00 0.00 1.85
577 578 3.643763 AGCGACACACTCAAGACTTAAG 58.356 45.455 0.00 0.00 0.00 1.85
578 579 2.155924 GCGACACACTCAAGACTTAAGC 59.844 50.000 1.29 0.00 0.00 3.09
579 580 3.643763 CGACACACTCAAGACTTAAGCT 58.356 45.455 1.29 0.00 0.00 3.74
580 581 4.051922 CGACACACTCAAGACTTAAGCTT 58.948 43.478 3.48 3.48 0.00 3.74
581 582 4.084849 CGACACACTCAAGACTTAAGCTTG 60.085 45.833 22.92 22.92 43.09 4.01
582 583 4.770795 ACACACTCAAGACTTAAGCTTGT 58.229 39.130 25.45 13.60 42.49 3.16
583 584 5.914033 ACACACTCAAGACTTAAGCTTGTA 58.086 37.500 25.45 17.01 42.49 2.41
584 585 6.525629 ACACACTCAAGACTTAAGCTTGTAT 58.474 36.000 25.45 17.57 42.49 2.29
585 586 7.667557 ACACACTCAAGACTTAAGCTTGTATA 58.332 34.615 25.45 14.21 42.49 1.47
586 587 8.314751 ACACACTCAAGACTTAAGCTTGTATAT 58.685 33.333 25.45 14.91 42.49 0.86
587 588 9.803315 CACACTCAAGACTTAAGCTTGTATATA 57.197 33.333 25.45 13.74 42.49 0.86
588 589 9.804758 ACACTCAAGACTTAAGCTTGTATATAC 57.195 33.333 25.45 5.89 42.49 1.47
589 590 9.803315 CACTCAAGACTTAAGCTTGTATATACA 57.197 33.333 25.45 11.62 42.49 2.29
597 598 9.464714 ACTTAAGCTTGTATATACATTGACTCG 57.535 33.333 16.16 6.52 35.89 4.18
598 599 9.464714 CTTAAGCTTGTATATACATTGACTCGT 57.535 33.333 16.16 4.11 35.89 4.18
599 600 7.700322 AAGCTTGTATATACATTGACTCGTG 57.300 36.000 16.16 1.24 35.89 4.35
600 601 6.806751 AGCTTGTATATACATTGACTCGTGT 58.193 36.000 16.16 0.00 35.89 4.49
601 602 7.265673 AGCTTGTATATACATTGACTCGTGTT 58.734 34.615 16.16 0.00 35.89 3.32
602 603 7.222805 AGCTTGTATATACATTGACTCGTGTTG 59.777 37.037 16.16 0.00 35.89 3.33
603 604 7.222031 GCTTGTATATACATTGACTCGTGTTGA 59.778 37.037 16.16 0.00 35.89 3.18
604 605 9.249457 CTTGTATATACATTGACTCGTGTTGAT 57.751 33.333 16.16 0.00 35.89 2.57
605 606 8.797266 TGTATATACATTGACTCGTGTTGATC 57.203 34.615 11.62 0.00 0.00 2.92
606 607 8.410141 TGTATATACATTGACTCGTGTTGATCA 58.590 33.333 11.62 0.00 0.00 2.92
607 608 7.936950 ATATACATTGACTCGTGTTGATCAG 57.063 36.000 0.00 0.00 0.00 2.90
608 609 4.257267 ACATTGACTCGTGTTGATCAGA 57.743 40.909 0.00 0.00 0.00 3.27
609 610 4.631131 ACATTGACTCGTGTTGATCAGAA 58.369 39.130 0.00 0.00 0.00 3.02
610 611 4.449068 ACATTGACTCGTGTTGATCAGAAC 59.551 41.667 0.00 0.00 0.00 3.01
611 612 2.661594 TGACTCGTGTTGATCAGAACG 58.338 47.619 20.31 20.31 37.38 3.95
612 613 2.034179 TGACTCGTGTTGATCAGAACGT 59.966 45.455 23.41 11.58 37.32 3.99
613 614 2.394708 ACTCGTGTTGATCAGAACGTG 58.605 47.619 23.41 22.80 37.32 4.49
614 615 2.223735 ACTCGTGTTGATCAGAACGTGT 60.224 45.455 23.15 23.15 37.77 4.49
615 616 2.124122 TCGTGTTGATCAGAACGTGTG 58.876 47.619 23.41 0.00 37.32 3.82
616 617 1.397190 CGTGTTGATCAGAACGTGTGC 60.397 52.381 18.85 0.00 0.00 4.57
617 618 1.597195 GTGTTGATCAGAACGTGTGCA 59.403 47.619 0.00 0.00 0.00 4.57
618 619 2.224079 GTGTTGATCAGAACGTGTGCAT 59.776 45.455 0.00 0.00 0.00 3.96
619 620 2.877786 TGTTGATCAGAACGTGTGCATT 59.122 40.909 0.00 0.00 0.00 3.56
620 621 3.228749 GTTGATCAGAACGTGTGCATTG 58.771 45.455 0.00 0.00 0.00 2.82
621 622 2.493035 TGATCAGAACGTGTGCATTGT 58.507 42.857 0.00 0.00 0.00 2.71
622 623 2.877786 TGATCAGAACGTGTGCATTGTT 59.122 40.909 0.00 0.00 0.00 2.83
623 624 4.061596 TGATCAGAACGTGTGCATTGTTA 58.938 39.130 0.00 0.00 0.00 2.41
624 625 3.870723 TCAGAACGTGTGCATTGTTAC 57.129 42.857 0.00 0.00 0.00 2.50
625 626 2.219903 TCAGAACGTGTGCATTGTTACG 59.780 45.455 0.00 0.00 41.86 3.18
626 627 2.219903 CAGAACGTGTGCATTGTTACGA 59.780 45.455 14.23 0.00 39.61 3.43
627 628 2.220133 AGAACGTGTGCATTGTTACGAC 59.780 45.455 14.23 9.23 39.61 4.34
628 629 0.505231 ACGTGTGCATTGTTACGACG 59.495 50.000 14.23 0.00 39.61 5.12
629 630 0.505231 CGTGTGCATTGTTACGACGT 59.495 50.000 5.52 5.52 38.72 4.34
630 631 1.714990 CGTGTGCATTGTTACGACGTA 59.285 47.619 2.97 2.97 38.72 3.57
631 632 2.469501 CGTGTGCATTGTTACGACGTAC 60.470 50.000 7.33 4.10 38.72 3.67
632 633 2.727798 GTGTGCATTGTTACGACGTACT 59.272 45.455 7.33 0.00 0.00 2.73
633 634 2.981805 TGTGCATTGTTACGACGTACTC 59.018 45.455 7.33 4.93 0.00 2.59
634 635 2.343544 GTGCATTGTTACGACGTACTCC 59.656 50.000 7.33 0.00 0.00 3.85
635 636 1.922545 GCATTGTTACGACGTACTCCC 59.077 52.381 7.33 0.00 0.00 4.30
636 637 2.533266 CATTGTTACGACGTACTCCCC 58.467 52.381 7.33 0.00 0.00 4.81
637 638 0.521291 TTGTTACGACGTACTCCCCG 59.479 55.000 7.33 0.00 0.00 5.73
638 639 0.605319 TGTTACGACGTACTCCCCGT 60.605 55.000 7.33 3.21 42.06 5.28
639 640 0.521735 GTTACGACGTACTCCCCGTT 59.478 55.000 7.33 0.00 38.92 4.44
640 641 0.802494 TTACGACGTACTCCCCGTTC 59.198 55.000 7.33 0.00 38.92 3.95
641 642 1.024579 TACGACGTACTCCCCGTTCC 61.025 60.000 2.97 0.00 38.92 3.62
642 643 2.042831 CGACGTACTCCCCGTTCCT 61.043 63.158 0.00 0.00 38.92 3.36
643 644 0.744414 CGACGTACTCCCCGTTCCTA 60.744 60.000 0.00 0.00 38.92 2.94
644 645 1.463674 GACGTACTCCCCGTTCCTAA 58.536 55.000 0.00 0.00 38.92 2.69
645 646 1.818674 GACGTACTCCCCGTTCCTAAA 59.181 52.381 0.00 0.00 38.92 1.85
646 647 2.428530 GACGTACTCCCCGTTCCTAAAT 59.571 50.000 0.00 0.00 38.92 1.40
647 648 3.631250 ACGTACTCCCCGTTCCTAAATA 58.369 45.455 0.00 0.00 34.28 1.40
648 649 4.218312 ACGTACTCCCCGTTCCTAAATAT 58.782 43.478 0.00 0.00 34.28 1.28
649 650 4.651045 ACGTACTCCCCGTTCCTAAATATT 59.349 41.667 0.00 0.00 34.28 1.28
650 651 5.129320 ACGTACTCCCCGTTCCTAAATATTT 59.871 40.000 5.89 5.89 34.28 1.40
651 652 6.323739 ACGTACTCCCCGTTCCTAAATATTTA 59.676 38.462 7.66 7.66 34.28 1.40
652 653 7.015584 ACGTACTCCCCGTTCCTAAATATTTAT 59.984 37.037 8.34 0.00 34.28 1.40
653 654 7.874528 CGTACTCCCCGTTCCTAAATATTTATT 59.125 37.037 8.34 0.00 0.00 1.40
654 655 9.565090 GTACTCCCCGTTCCTAAATATTTATTT 57.435 33.333 8.34 1.54 39.14 1.40
694 695 1.934463 CATGCGCACTATTCCGTCC 59.066 57.895 14.90 0.00 0.00 4.79
794 834 2.084546 AGACTATTTTGTTGCCCTCGC 58.915 47.619 0.00 0.00 0.00 5.03
939 1072 2.441348 TCCTGCCGGCGATGTAGA 60.441 61.111 23.90 8.86 0.00 2.59
974 1143 4.077184 TCCCGGCTACGCAACCTG 62.077 66.667 0.00 0.00 39.22 4.00
1365 1554 2.914695 TTGTGTAGTACAAGGGCGTT 57.085 45.000 4.11 0.00 44.07 4.84
1443 1633 3.493129 GCTATGATGGCAAATTCGTCGTA 59.507 43.478 0.00 0.00 0.00 3.43
1478 1668 3.951037 TGATAGAGAAGAGCACAGGAGAC 59.049 47.826 0.00 0.00 0.00 3.36
1569 1759 3.452264 TGATACTGCTGGTCTGCTACAAT 59.548 43.478 0.00 0.00 0.00 2.71
1585 1775 1.064208 ACAATTTTGTGTACGCGTGCA 59.936 42.857 26.35 26.35 40.49 4.57
1646 1836 6.422100 GCTTAACTGATCAATGAGCTAATCGA 59.578 38.462 14.26 0.00 0.00 3.59
1674 1864 3.005684 TCGTAACCACACAACGATAAGGT 59.994 43.478 0.00 0.00 40.43 3.50
1699 1889 4.156739 CCTTATCTGTTTGGTTCCTTCTGC 59.843 45.833 0.00 0.00 0.00 4.26
1711 1901 3.140325 TCCTTCTGCATTTTCGTCCTT 57.860 42.857 0.00 0.00 0.00 3.36
1712 1902 3.486383 TCCTTCTGCATTTTCGTCCTTT 58.514 40.909 0.00 0.00 0.00 3.11
1742 1932 8.948631 TCTATTGAATGTATGTGTTCCTCTTC 57.051 34.615 0.00 0.00 0.00 2.87
1744 1934 7.856145 ATTGAATGTATGTGTTCCTCTTCTC 57.144 36.000 0.00 0.00 0.00 2.87
1783 1973 2.576648 GGGGATGGGTGTATTAGGATCC 59.423 54.545 2.48 2.48 0.00 3.36
1827 2017 3.185188 GCTATGCAGACGATACATGTTGG 59.815 47.826 2.30 0.00 0.00 3.77
1841 2031 3.530535 CATGTTGGACGATACATGGACA 58.469 45.455 0.00 0.00 44.90 4.02
1854 2044 8.421784 ACGATACATGGACAATAGTGTAAATCT 58.578 33.333 0.00 0.00 38.41 2.40
1958 2148 7.633361 TGTGAAGTAGTTTCGTAAGTTGATC 57.367 36.000 0.00 0.00 38.71 2.92
1990 2180 3.976339 TTTTTGTTGGCATCCACCG 57.024 47.368 0.00 0.00 30.78 4.94
2008 2198 4.239304 CACCGTAGTTATAGTTGCACACA 58.761 43.478 0.00 0.00 0.00 3.72
2020 2210 5.995565 AGTTGCACACATAGTAGTCCTAA 57.004 39.130 0.00 0.00 0.00 2.69
2053 2243 1.210155 GCCACCGAGTTGCACAATC 59.790 57.895 0.00 0.00 0.00 2.67
2069 2259 1.112113 AATCTGGTCCGCATAGTCGT 58.888 50.000 0.00 0.00 0.00 4.34
2087 2277 9.715123 CATAGTCGTATATGAATTGTTTTGCAA 57.285 29.630 0.00 0.00 37.13 4.08
2133 2323 3.637432 TGAATTGTTTTGCAACTAGGCG 58.363 40.909 0.00 0.00 40.28 5.52
2149 2339 1.610873 GCGGGTCCCCTTATCCAAA 59.389 57.895 1.00 0.00 0.00 3.28
2152 2342 2.953161 GCGGGTCCCCTTATCCAAATTT 60.953 50.000 1.00 0.00 0.00 1.82
2354 2550 4.754322 CTCTTCTCTTTTACCCTCTCAGC 58.246 47.826 0.00 0.00 0.00 4.26
2421 2617 2.180769 GCGGGATTCAAAACGGGC 59.819 61.111 0.00 0.00 0.00 6.13
2465 2661 3.045634 ACTGATAATGACGGGGATGGAA 58.954 45.455 0.00 0.00 0.00 3.53
2469 2665 0.395724 AATGACGGGGATGGAAAGGC 60.396 55.000 0.00 0.00 0.00 4.35
2473 2669 1.281925 ACGGGGATGGAAAGGCTGAT 61.282 55.000 0.00 0.00 0.00 2.90
2825 3027 4.038763 ACCAGTGACTCGTTGAAGACAATA 59.961 41.667 0.00 0.00 38.32 1.90
2858 3060 2.620115 CAGTTCCAGTTGCTGTGACAAT 59.380 45.455 0.00 0.00 0.00 2.71
2863 3065 4.397420 TCCAGTTGCTGTGACAATTGTAT 58.603 39.130 11.95 0.00 35.99 2.29
3145 3348 0.846693 ACACTCTTTGGCTCTGGGTT 59.153 50.000 0.00 0.00 0.00 4.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 4.379243 AACCTCTGCACCGGCGAG 62.379 66.667 9.30 0.73 45.35 5.03
6 7 4.680237 CAACCTCTGCACCGGCGA 62.680 66.667 9.30 0.00 45.35 5.54
7 8 4.680237 TCAACCTCTGCACCGGCG 62.680 66.667 0.00 0.00 45.35 6.46
8 9 2.743928 CTCAACCTCTGCACCGGC 60.744 66.667 0.00 0.00 41.68 6.13
9 10 2.743928 GCTCAACCTCTGCACCGG 60.744 66.667 0.00 0.00 0.00 5.28
10 11 2.031012 TGCTCAACCTCTGCACCG 59.969 61.111 0.00 0.00 0.00 4.94
11 12 2.331132 GCTGCTCAACCTCTGCACC 61.331 63.158 0.00 0.00 32.91 5.01
12 13 2.675056 CGCTGCTCAACCTCTGCAC 61.675 63.158 0.00 0.00 32.91 4.57
13 14 2.357881 CGCTGCTCAACCTCTGCA 60.358 61.111 0.00 0.00 35.30 4.41
14 15 2.358003 ACGCTGCTCAACCTCTGC 60.358 61.111 0.00 0.00 0.00 4.26
15 16 1.301244 ACACGCTGCTCAACCTCTG 60.301 57.895 0.00 0.00 0.00 3.35
16 17 1.301244 CACACGCTGCTCAACCTCT 60.301 57.895 0.00 0.00 0.00 3.69
17 18 2.959357 GCACACGCTGCTCAACCTC 61.959 63.158 0.00 0.00 43.33 3.85
18 19 2.974698 GCACACGCTGCTCAACCT 60.975 61.111 0.00 0.00 43.33 3.50
19 20 4.030452 GGCACACGCTGCTCAACC 62.030 66.667 5.71 0.00 46.25 3.77
63 64 4.043200 GGGCAAGTGGCTGTTCGC 62.043 66.667 4.74 0.00 44.01 4.70
64 65 2.281761 AGGGCAAGTGGCTGTTCG 60.282 61.111 4.74 0.00 44.01 3.95
65 66 2.328099 CGAGGGCAAGTGGCTGTTC 61.328 63.158 4.74 0.67 44.01 3.18
66 67 1.764571 TACGAGGGCAAGTGGCTGTT 61.765 55.000 4.74 0.00 44.01 3.16
67 68 2.172483 CTACGAGGGCAAGTGGCTGT 62.172 60.000 4.74 4.39 44.01 4.40
68 69 1.448540 CTACGAGGGCAAGTGGCTG 60.449 63.158 4.74 0.00 44.01 4.85
69 70 2.660064 CCTACGAGGGCAAGTGGCT 61.660 63.158 4.74 0.00 44.01 4.75
70 71 2.125106 CCTACGAGGGCAAGTGGC 60.125 66.667 0.00 0.00 43.74 5.01
71 72 1.517832 CTCCTACGAGGGCAAGTGG 59.482 63.158 0.00 0.00 35.59 4.00
72 73 1.153549 GCTCCTACGAGGGCAAGTG 60.154 63.158 0.00 0.00 35.59 3.16
73 74 2.359967 GGCTCCTACGAGGGCAAGT 61.360 63.158 0.00 0.00 35.59 3.16
74 75 2.501610 GGCTCCTACGAGGGCAAG 59.498 66.667 0.00 0.00 35.59 4.01
75 76 3.458163 CGGCTCCTACGAGGGCAA 61.458 66.667 0.00 0.00 35.59 4.52
76 77 3.949885 TTCGGCTCCTACGAGGGCA 62.950 63.158 0.00 0.00 41.81 5.36
77 78 3.140225 CTTCGGCTCCTACGAGGGC 62.140 68.421 0.00 0.00 41.81 5.19
78 79 1.035932 TTCTTCGGCTCCTACGAGGG 61.036 60.000 0.00 0.00 41.81 4.30
79 80 0.815734 TTTCTTCGGCTCCTACGAGG 59.184 55.000 0.00 0.00 41.81 4.63
80 81 1.794437 CGTTTCTTCGGCTCCTACGAG 60.794 57.143 0.00 0.00 41.81 4.18
81 82 0.169672 CGTTTCTTCGGCTCCTACGA 59.830 55.000 0.00 0.00 38.78 3.43
82 83 0.801067 CCGTTTCTTCGGCTCCTACG 60.801 60.000 0.00 0.00 43.96 3.51
83 84 3.046280 CCGTTTCTTCGGCTCCTAC 57.954 57.895 0.00 0.00 43.96 3.18
112 113 3.655810 GACCTGCTGCCTGAGGACG 62.656 68.421 0.65 0.00 33.16 4.79
113 114 2.267324 GACCTGCTGCCTGAGGAC 59.733 66.667 0.65 1.80 33.16 3.85
114 115 3.005539 GGACCTGCTGCCTGAGGA 61.006 66.667 0.65 0.00 33.16 3.71
115 116 3.324930 TGGACCTGCTGCCTGAGG 61.325 66.667 0.00 0.00 35.26 3.86
116 117 2.268280 CTGGACCTGCTGCCTGAG 59.732 66.667 0.00 0.00 0.00 3.35
117 118 3.324930 CCTGGACCTGCTGCCTGA 61.325 66.667 0.00 0.00 0.00 3.86
118 119 3.201707 AACCTGGACCTGCTGCCTG 62.202 63.158 0.00 0.00 0.00 4.85
119 120 2.856000 AACCTGGACCTGCTGCCT 60.856 61.111 0.00 0.00 0.00 4.75
120 121 2.674380 CAACCTGGACCTGCTGCC 60.674 66.667 0.00 0.00 0.00 4.85
121 122 2.113986 ACAACCTGGACCTGCTGC 59.886 61.111 0.00 0.00 0.00 5.25
122 123 1.601759 CCACAACCTGGACCTGCTG 60.602 63.158 0.00 0.00 43.95 4.41
123 124 2.839098 CCACAACCTGGACCTGCT 59.161 61.111 0.00 0.00 43.95 4.24
124 125 2.985847 GCCACAACCTGGACCTGC 60.986 66.667 0.00 0.00 43.95 4.85
125 126 1.601759 CTGCCACAACCTGGACCTG 60.602 63.158 0.00 0.00 43.95 4.00
126 127 2.833913 CCTGCCACAACCTGGACCT 61.834 63.158 0.00 0.00 43.95 3.85
127 128 2.282462 CCTGCCACAACCTGGACC 60.282 66.667 0.00 0.00 43.95 4.46
128 129 2.985847 GCCTGCCACAACCTGGAC 60.986 66.667 0.00 0.00 43.95 4.02
129 130 4.641645 CGCCTGCCACAACCTGGA 62.642 66.667 0.00 0.00 43.95 3.86
151 152 4.519437 TCGGCTGCATCCTGAGCG 62.519 66.667 4.84 0.00 35.95 5.03
152 153 2.124983 TTCGGCTGCATCCTGAGC 60.125 61.111 4.84 0.00 34.23 4.26
153 154 2.169789 CGTTCGGCTGCATCCTGAG 61.170 63.158 4.84 0.00 0.00 3.35
154 155 2.125552 CGTTCGGCTGCATCCTGA 60.126 61.111 4.84 1.15 0.00 3.86
155 156 2.125552 TCGTTCGGCTGCATCCTG 60.126 61.111 4.84 0.00 0.00 3.86
156 157 2.125512 GTCGTTCGGCTGCATCCT 60.126 61.111 4.84 0.00 0.00 3.24
157 158 3.554692 CGTCGTTCGGCTGCATCC 61.555 66.667 0.50 0.00 35.71 3.51
190 191 3.092511 TCCCCTGGCTCCTCATGC 61.093 66.667 0.00 0.00 0.00 4.06
191 192 3.117452 GCTCCCCTGGCTCCTCATG 62.117 68.421 0.00 0.00 0.00 3.07
192 193 2.771762 GCTCCCCTGGCTCCTCAT 60.772 66.667 0.00 0.00 0.00 2.90
193 194 4.337304 TGCTCCCCTGGCTCCTCA 62.337 66.667 0.00 0.00 0.00 3.86
194 195 3.791586 GTGCTCCCCTGGCTCCTC 61.792 72.222 0.00 0.00 0.00 3.71
197 198 3.415087 ATGGTGCTCCCCTGGCTC 61.415 66.667 1.59 0.00 0.00 4.70
198 199 3.736224 CATGGTGCTCCCCTGGCT 61.736 66.667 1.59 0.00 0.00 4.75
199 200 3.711059 CTCATGGTGCTCCCCTGGC 62.711 68.421 1.59 0.00 0.00 4.85
200 201 2.593978 CTCATGGTGCTCCCCTGG 59.406 66.667 1.59 0.00 0.00 4.45
201 202 2.593978 CCTCATGGTGCTCCCCTG 59.406 66.667 1.59 0.34 0.00 4.45
202 203 3.415087 GCCTCATGGTGCTCCCCT 61.415 66.667 1.59 0.00 35.27 4.79
203 204 4.864334 CGCCTCATGGTGCTCCCC 62.864 72.222 1.59 0.00 37.01 4.81
228 229 4.362476 CAAAGCGGTGCCCAAGCC 62.362 66.667 0.00 0.00 38.69 4.35
229 230 3.605664 ACAAAGCGGTGCCCAAGC 61.606 61.111 0.00 0.00 40.48 4.01
230 231 2.336088 CACAAAGCGGTGCCCAAG 59.664 61.111 0.00 0.00 31.10 3.61
240 241 1.658409 GCAAGTCGTGGCACAAAGC 60.658 57.895 19.09 9.85 44.16 3.51
241 242 0.317269 CTGCAAGTCGTGGCACAAAG 60.317 55.000 19.09 1.11 44.16 2.77
242 243 1.726865 CTGCAAGTCGTGGCACAAA 59.273 52.632 19.09 1.54 44.16 2.83
243 244 2.833533 GCTGCAAGTCGTGGCACAA 61.834 57.895 19.09 0.00 36.36 3.33
244 245 3.279116 GCTGCAAGTCGTGGCACA 61.279 61.111 19.09 1.83 35.86 4.57
245 246 3.245948 CTGCTGCAAGTCGTGGCAC 62.246 63.158 7.79 7.79 35.86 5.01
246 247 2.974148 CTGCTGCAAGTCGTGGCA 60.974 61.111 3.02 0.00 38.52 4.92
247 248 3.730761 CCTGCTGCAAGTCGTGGC 61.731 66.667 3.02 0.00 35.30 5.01
248 249 3.730761 GCCTGCTGCAAGTCGTGG 61.731 66.667 3.02 0.95 40.77 4.94
249 250 4.081030 CGCCTGCTGCAAGTCGTG 62.081 66.667 3.02 0.00 41.33 4.35
258 259 2.898840 CTACATGGGCGCCTGCTG 60.899 66.667 28.56 22.11 42.25 4.41
259 260 3.083349 TCTACATGGGCGCCTGCT 61.083 61.111 28.56 8.38 42.25 4.24
260 261 2.897350 GTCTACATGGGCGCCTGC 60.897 66.667 28.56 11.61 41.71 4.85
261 262 2.586079 CGTCTACATGGGCGCCTG 60.586 66.667 28.56 20.60 0.00 4.85
262 263 3.849951 CCGTCTACATGGGCGCCT 61.850 66.667 28.56 9.11 0.00 5.52
263 264 4.157120 ACCGTCTACATGGGCGCC 62.157 66.667 21.18 21.18 32.01 6.53
264 265 2.890474 CACCGTCTACATGGGCGC 60.890 66.667 0.00 0.00 32.01 6.53
265 266 1.518572 GACACCGTCTACATGGGCG 60.519 63.158 0.00 0.00 32.01 6.13
266 267 1.518572 CGACACCGTCTACATGGGC 60.519 63.158 0.00 0.00 32.01 5.36
267 268 0.744874 ATCGACACCGTCTACATGGG 59.255 55.000 0.00 0.00 37.05 4.00
268 269 1.536072 CCATCGACACCGTCTACATGG 60.536 57.143 0.00 0.00 37.05 3.66
269 270 1.536072 CCCATCGACACCGTCTACATG 60.536 57.143 0.00 0.00 37.05 3.21
270 271 0.744874 CCCATCGACACCGTCTACAT 59.255 55.000 0.00 0.00 37.05 2.29
271 272 1.317431 CCCCATCGACACCGTCTACA 61.317 60.000 0.00 0.00 37.05 2.74
272 273 1.436336 CCCCATCGACACCGTCTAC 59.564 63.158 0.00 0.00 37.05 2.59
273 274 2.420568 GCCCCATCGACACCGTCTA 61.421 63.158 0.00 0.00 37.05 2.59
274 275 3.771160 GCCCCATCGACACCGTCT 61.771 66.667 0.00 0.00 37.05 4.18
275 276 3.599285 TTGCCCCATCGACACCGTC 62.599 63.158 0.00 0.00 37.05 4.79
276 277 3.605749 CTTGCCCCATCGACACCGT 62.606 63.158 0.00 0.00 37.05 4.83
277 278 2.819595 CTTGCCCCATCGACACCG 60.820 66.667 0.00 0.00 37.07 4.94
278 279 1.906105 TACCTTGCCCCATCGACACC 61.906 60.000 0.00 0.00 0.00 4.16
279 280 0.462047 CTACCTTGCCCCATCGACAC 60.462 60.000 0.00 0.00 0.00 3.67
280 281 1.622607 CCTACCTTGCCCCATCGACA 61.623 60.000 0.00 0.00 0.00 4.35
281 282 1.146263 CCTACCTTGCCCCATCGAC 59.854 63.158 0.00 0.00 0.00 4.20
282 283 2.742116 GCCTACCTTGCCCCATCGA 61.742 63.158 0.00 0.00 0.00 3.59
283 284 2.203209 GCCTACCTTGCCCCATCG 60.203 66.667 0.00 0.00 0.00 3.84
284 285 2.203209 CGCCTACCTTGCCCCATC 60.203 66.667 0.00 0.00 0.00 3.51
285 286 3.809013 CCGCCTACCTTGCCCCAT 61.809 66.667 0.00 0.00 0.00 4.00
289 290 4.426313 AAGGCCGCCTACCTTGCC 62.426 66.667 13.73 0.00 45.88 4.52
293 294 2.366972 ATCCAAGGCCGCCTACCT 60.367 61.111 13.73 0.00 40.02 3.08
294 295 2.203209 CATCCAAGGCCGCCTACC 60.203 66.667 13.73 0.00 31.13 3.18
295 296 2.902343 GCATCCAAGGCCGCCTAC 60.902 66.667 13.73 0.00 31.13 3.18
296 297 2.680974 GATGCATCCAAGGCCGCCTA 62.681 60.000 13.73 0.00 31.13 3.93
297 298 4.133373 ATGCATCCAAGGCCGCCT 62.133 61.111 5.94 5.94 33.87 5.52
298 299 3.599704 GATGCATCCAAGGCCGCC 61.600 66.667 16.23 0.00 0.00 6.13
299 300 3.957535 CGATGCATCCAAGGCCGC 61.958 66.667 20.87 0.00 0.00 6.53
300 301 3.282157 CCGATGCATCCAAGGCCG 61.282 66.667 20.87 7.87 0.00 6.13
301 302 1.895707 CTCCGATGCATCCAAGGCC 60.896 63.158 20.87 0.00 0.00 5.19
302 303 1.895707 CCTCCGATGCATCCAAGGC 60.896 63.158 22.45 0.58 0.00 4.35
303 304 0.399454 ATCCTCCGATGCATCCAAGG 59.601 55.000 25.86 25.86 0.00 3.61
304 305 1.520494 CATCCTCCGATGCATCCAAG 58.480 55.000 20.87 16.70 39.59 3.61
305 306 3.711937 CATCCTCCGATGCATCCAA 57.288 52.632 20.87 8.20 39.59 3.53
319 320 1.596477 GAGCTGCCGGATGACATCC 60.596 63.158 22.66 22.66 46.22 3.51
320 321 0.250209 ATGAGCTGCCGGATGACATC 60.250 55.000 5.05 6.91 0.00 3.06
321 322 0.250209 GATGAGCTGCCGGATGACAT 60.250 55.000 5.05 3.22 0.00 3.06
322 323 1.144716 GATGAGCTGCCGGATGACA 59.855 57.895 5.05 0.00 0.00 3.58
323 324 1.596477 GGATGAGCTGCCGGATGAC 60.596 63.158 5.05 0.00 0.00 3.06
324 325 2.811514 GGGATGAGCTGCCGGATGA 61.812 63.158 5.05 0.00 0.00 2.92
325 326 2.281345 GGGATGAGCTGCCGGATG 60.281 66.667 5.05 0.00 0.00 3.51
326 327 2.769621 TGGGATGAGCTGCCGGAT 60.770 61.111 5.05 0.00 38.45 4.18
327 328 3.473647 CTGGGATGAGCTGCCGGA 61.474 66.667 5.05 0.00 44.39 5.14
329 330 4.478371 TGCTGGGATGAGCTGCCG 62.478 66.667 0.00 0.00 38.45 5.69
330 331 2.827642 GTGCTGGGATGAGCTGCC 60.828 66.667 0.00 0.00 39.90 4.85
331 332 3.200593 CGTGCTGGGATGAGCTGC 61.201 66.667 0.00 0.00 39.90 5.25
332 333 3.200593 GCGTGCTGGGATGAGCTG 61.201 66.667 0.00 0.00 39.90 4.24
333 334 4.479993 GGCGTGCTGGGATGAGCT 62.480 66.667 0.00 0.00 39.90 4.09
352 353 3.800685 TATTCGTCCATGGCGGCCG 62.801 63.158 24.05 24.05 33.14 6.13
353 354 1.525077 TTATTCGTCCATGGCGGCC 60.525 57.895 22.59 13.32 33.14 6.13
354 355 1.647084 GTTATTCGTCCATGGCGGC 59.353 57.895 22.59 0.00 33.14 6.53
355 356 1.931551 CGTTATTCGTCCATGGCGG 59.068 57.895 22.59 11.18 34.52 6.13
372 373 4.321434 GCGTGTGCTTTGACGTAGTACG 62.321 54.545 20.82 20.82 42.46 3.67
373 374 1.123756 GCGTGTGCTTTGACGTAGTAC 59.876 52.381 0.00 0.00 38.87 2.73
374 375 1.411394 GCGTGTGCTTTGACGTAGTA 58.589 50.000 0.00 0.00 38.87 1.82
375 376 1.545614 CGCGTGTGCTTTGACGTAGT 61.546 55.000 0.00 0.00 42.18 2.73
376 377 1.127817 CGCGTGTGCTTTGACGTAG 59.872 57.895 0.00 0.00 39.65 3.51
377 378 2.304401 CCGCGTGTGCTTTGACGTA 61.304 57.895 4.92 0.00 39.65 3.57
378 379 3.636043 CCGCGTGTGCTTTGACGT 61.636 61.111 4.92 0.00 39.65 4.34
379 380 4.368808 CCCGCGTGTGCTTTGACG 62.369 66.667 4.92 0.00 39.65 4.35
380 381 2.240612 GATCCCGCGTGTGCTTTGAC 62.241 60.000 4.92 0.00 39.65 3.18
381 382 2.031919 ATCCCGCGTGTGCTTTGA 59.968 55.556 4.92 0.00 39.65 2.69
382 383 2.034879 AGATCCCGCGTGTGCTTTG 61.035 57.895 4.92 0.00 39.65 2.77
383 384 2.034879 CAGATCCCGCGTGTGCTTT 61.035 57.895 4.92 0.00 39.65 3.51
384 385 2.434884 CAGATCCCGCGTGTGCTT 60.435 61.111 4.92 0.00 39.65 3.91
385 386 4.457496 CCAGATCCCGCGTGTGCT 62.457 66.667 4.92 0.00 39.65 4.40
386 387 4.760047 ACCAGATCCCGCGTGTGC 62.760 66.667 4.92 0.00 37.91 4.57
387 388 2.509336 GACCAGATCCCGCGTGTG 60.509 66.667 4.92 0.00 0.00 3.82
388 389 2.680352 AGACCAGATCCCGCGTGT 60.680 61.111 4.92 0.00 0.00 4.49
389 390 2.105128 GAGACCAGATCCCGCGTG 59.895 66.667 4.92 0.00 0.00 5.34
390 391 3.148279 GGAGACCAGATCCCGCGT 61.148 66.667 4.92 0.00 0.00 6.01
401 402 3.933399 GGCAAGACCTGTTGGGAGACC 62.933 61.905 0.00 0.00 44.02 3.85
402 403 0.606673 GGCAAGACCTGTTGGGAGAC 60.607 60.000 0.00 0.00 38.76 3.36
403 404 1.761174 GGCAAGACCTGTTGGGAGA 59.239 57.895 0.00 0.00 38.76 3.71
404 405 1.303643 GGGCAAGACCTGTTGGGAG 60.304 63.158 0.00 0.00 39.10 4.30
405 406 1.774217 AGGGCAAGACCTGTTGGGA 60.774 57.895 0.00 0.00 40.04 4.37
406 407 2.846532 AGGGCAAGACCTGTTGGG 59.153 61.111 0.00 0.00 40.04 4.12
412 413 4.021925 GCGACCAGGGCAAGACCT 62.022 66.667 0.00 0.00 43.08 3.85
413 414 2.252072 TATGCGACCAGGGCAAGACC 62.252 60.000 0.00 0.00 44.66 3.85
414 415 0.179045 ATATGCGACCAGGGCAAGAC 60.179 55.000 0.00 0.00 44.66 3.01
415 416 1.419381 TATATGCGACCAGGGCAAGA 58.581 50.000 0.00 0.00 44.66 3.02
416 417 2.479566 ATATATGCGACCAGGGCAAG 57.520 50.000 0.00 0.00 44.66 4.01
417 418 2.635427 TGTATATATGCGACCAGGGCAA 59.365 45.455 0.00 0.00 44.66 4.52
418 419 2.233676 CTGTATATATGCGACCAGGGCA 59.766 50.000 0.00 0.00 45.71 5.36
419 420 2.893637 CTGTATATATGCGACCAGGGC 58.106 52.381 0.00 0.00 0.00 5.19
420 421 2.233676 TGCTGTATATATGCGACCAGGG 59.766 50.000 0.00 0.00 0.00 4.45
421 422 3.592898 TGCTGTATATATGCGACCAGG 57.407 47.619 0.00 0.00 0.00 4.45
422 423 4.498241 ACATGCTGTATATATGCGACCAG 58.502 43.478 0.00 0.00 0.00 4.00
423 424 4.535526 ACATGCTGTATATATGCGACCA 57.464 40.909 0.00 0.00 0.00 4.02
424 425 5.651530 ACTACATGCTGTATATATGCGACC 58.348 41.667 0.00 0.00 31.66 4.79
425 426 6.411203 CGTACTACATGCTGTATATATGCGAC 59.589 42.308 0.00 0.00 31.66 5.19
426 427 6.314400 TCGTACTACATGCTGTATATATGCGA 59.686 38.462 0.00 0.00 31.66 5.10
427 428 6.411203 GTCGTACTACATGCTGTATATATGCG 59.589 42.308 0.00 0.00 31.66 4.73
428 429 7.473366 AGTCGTACTACATGCTGTATATATGC 58.527 38.462 0.00 0.00 31.66 3.14
429 430 9.278734 CAAGTCGTACTACATGCTGTATATATG 57.721 37.037 0.00 0.00 31.66 1.78
430 431 9.227777 TCAAGTCGTACTACATGCTGTATATAT 57.772 33.333 0.00 0.00 31.66 0.86
431 432 8.611654 TCAAGTCGTACTACATGCTGTATATA 57.388 34.615 0.00 0.00 31.66 0.86
432 433 7.506328 TCAAGTCGTACTACATGCTGTATAT 57.494 36.000 0.00 0.00 31.66 0.86
433 434 6.930667 TCAAGTCGTACTACATGCTGTATA 57.069 37.500 0.00 0.00 31.66 1.47
434 435 5.830000 TCAAGTCGTACTACATGCTGTAT 57.170 39.130 0.00 0.00 31.66 2.29
435 436 5.182570 ACTTCAAGTCGTACTACATGCTGTA 59.817 40.000 0.00 0.00 0.00 2.74
436 437 4.022242 ACTTCAAGTCGTACTACATGCTGT 60.022 41.667 0.00 0.00 0.00 4.40
437 438 4.486090 ACTTCAAGTCGTACTACATGCTG 58.514 43.478 0.00 0.00 0.00 4.41
438 439 4.785511 ACTTCAAGTCGTACTACATGCT 57.214 40.909 0.00 0.00 0.00 3.79
439 440 4.091509 CCAACTTCAAGTCGTACTACATGC 59.908 45.833 0.00 0.00 0.00 4.06
440 441 4.625742 CCCAACTTCAAGTCGTACTACATG 59.374 45.833 0.00 0.00 0.00 3.21
441 442 4.817517 CCCAACTTCAAGTCGTACTACAT 58.182 43.478 0.00 0.00 0.00 2.29
442 443 3.553508 GCCCAACTTCAAGTCGTACTACA 60.554 47.826 0.00 0.00 0.00 2.74
443 444 2.991866 GCCCAACTTCAAGTCGTACTAC 59.008 50.000 0.00 0.00 0.00 2.73
444 445 2.895404 AGCCCAACTTCAAGTCGTACTA 59.105 45.455 0.00 0.00 0.00 1.82
445 446 1.692519 AGCCCAACTTCAAGTCGTACT 59.307 47.619 0.00 0.00 0.00 2.73
446 447 2.067013 GAGCCCAACTTCAAGTCGTAC 58.933 52.381 0.00 0.00 0.00 3.67
447 448 1.336517 CGAGCCCAACTTCAAGTCGTA 60.337 52.381 0.00 0.00 0.00 3.43
448 449 0.600255 CGAGCCCAACTTCAAGTCGT 60.600 55.000 0.00 0.00 0.00 4.34
449 450 1.291877 CCGAGCCCAACTTCAAGTCG 61.292 60.000 0.00 0.00 0.00 4.18
450 451 1.578206 GCCGAGCCCAACTTCAAGTC 61.578 60.000 0.00 0.00 0.00 3.01
451 452 1.600916 GCCGAGCCCAACTTCAAGT 60.601 57.895 0.00 0.00 0.00 3.16
452 453 0.890996 AAGCCGAGCCCAACTTCAAG 60.891 55.000 0.00 0.00 0.00 3.02
453 454 0.889186 GAAGCCGAGCCCAACTTCAA 60.889 55.000 0.00 0.00 38.68 2.69
454 455 1.302511 GAAGCCGAGCCCAACTTCA 60.303 57.895 0.00 0.00 38.68 3.02
455 456 2.391389 CGAAGCCGAGCCCAACTTC 61.391 63.158 0.00 0.00 38.22 3.01
456 457 2.358737 CGAAGCCGAGCCCAACTT 60.359 61.111 0.00 0.00 38.22 2.66
457 458 2.879233 TTCGAAGCCGAGCCCAACT 61.879 57.895 0.00 0.00 46.39 3.16
458 459 2.358247 TTCGAAGCCGAGCCCAAC 60.358 61.111 0.00 0.00 46.39 3.77
459 460 1.537814 TAGTTCGAAGCCGAGCCCAA 61.538 55.000 0.00 0.00 45.35 4.12
460 461 1.537814 TTAGTTCGAAGCCGAGCCCA 61.538 55.000 0.00 0.00 45.35 5.36
461 462 0.806492 CTTAGTTCGAAGCCGAGCCC 60.806 60.000 0.00 0.00 45.35 5.19
462 463 0.108756 ACTTAGTTCGAAGCCGAGCC 60.109 55.000 0.00 0.00 45.35 4.70
463 464 1.654602 GAACTTAGTTCGAAGCCGAGC 59.345 52.381 9.47 0.00 46.39 5.03
464 465 2.094649 AGGAACTTAGTTCGAAGCCGAG 60.095 50.000 17.50 0.00 40.94 4.63
465 466 1.891150 AGGAACTTAGTTCGAAGCCGA 59.109 47.619 17.50 0.00 42.78 5.54
466 467 2.365408 AGGAACTTAGTTCGAAGCCG 57.635 50.000 17.50 0.00 42.78 5.52
467 468 3.925299 GTGTAGGAACTTAGTTCGAAGCC 59.075 47.826 17.50 5.46 42.78 4.35
468 469 4.553323 TGTGTAGGAACTTAGTTCGAAGC 58.447 43.478 17.50 9.11 42.78 3.86
484 485 0.179187 CGCTCGACTGACCTGTGTAG 60.179 60.000 0.00 0.00 0.00 2.74
485 486 0.887836 ACGCTCGACTGACCTGTGTA 60.888 55.000 0.00 0.00 0.00 2.90
486 487 2.131294 GACGCTCGACTGACCTGTGT 62.131 60.000 0.00 0.00 0.00 3.72
487 488 1.442857 GACGCTCGACTGACCTGTG 60.443 63.158 0.00 0.00 0.00 3.66
488 489 1.173444 AAGACGCTCGACTGACCTGT 61.173 55.000 0.00 0.00 0.00 4.00
489 490 0.803117 TAAGACGCTCGACTGACCTG 59.197 55.000 0.00 0.00 0.00 4.00
490 491 0.803740 GTAAGACGCTCGACTGACCT 59.196 55.000 0.00 0.00 0.00 3.85
491 492 0.520404 TGTAAGACGCTCGACTGACC 59.480 55.000 6.76 0.00 0.00 4.02
492 493 1.069432 TGTGTAAGACGCTCGACTGAC 60.069 52.381 2.97 2.97 0.00 3.51
493 494 1.069432 GTGTGTAAGACGCTCGACTGA 60.069 52.381 0.00 0.00 31.83 3.41
494 495 1.069159 AGTGTGTAAGACGCTCGACTG 60.069 52.381 0.00 0.00 41.93 3.51
495 496 1.236628 AGTGTGTAAGACGCTCGACT 58.763 50.000 0.00 0.00 41.93 4.18
496 497 2.047679 AAGTGTGTAAGACGCTCGAC 57.952 50.000 0.00 0.00 45.06 4.20
497 498 2.411935 CGTAAGTGTGTAAGACGCTCGA 60.412 50.000 0.00 0.00 45.06 4.04
498 499 1.903139 CGTAAGTGTGTAAGACGCTCG 59.097 52.381 0.00 0.00 45.06 5.03
499 500 3.193157 TCGTAAGTGTGTAAGACGCTC 57.807 47.619 0.00 0.00 45.06 5.03
501 502 5.970023 AGATATTCGTAAGTGTGTAAGACGC 59.030 40.000 0.00 0.00 33.85 5.19
502 503 7.966157 AAGATATTCGTAAGTGTGTAAGACG 57.034 36.000 0.00 0.00 33.85 4.18
506 507 9.362539 GGAGAAAAGATATTCGTAAGTGTGTAA 57.637 33.333 0.00 0.00 34.46 2.41
507 508 8.525316 TGGAGAAAAGATATTCGTAAGTGTGTA 58.475 33.333 0.00 0.00 34.46 2.90
508 509 7.383687 TGGAGAAAAGATATTCGTAAGTGTGT 58.616 34.615 0.00 0.00 34.46 3.72
509 510 7.827819 TGGAGAAAAGATATTCGTAAGTGTG 57.172 36.000 0.00 0.00 34.46 3.82
510 511 7.549488 CCTTGGAGAAAAGATATTCGTAAGTGT 59.451 37.037 0.00 0.00 34.46 3.55
511 512 7.549488 ACCTTGGAGAAAAGATATTCGTAAGTG 59.451 37.037 0.00 0.00 34.46 3.16
512 513 7.621796 ACCTTGGAGAAAAGATATTCGTAAGT 58.378 34.615 0.00 0.00 34.46 2.24
513 514 7.043325 CGACCTTGGAGAAAAGATATTCGTAAG 60.043 40.741 0.00 0.00 34.46 2.34
514 515 6.755141 CGACCTTGGAGAAAAGATATTCGTAA 59.245 38.462 0.00 0.00 34.46 3.18
515 516 6.127535 ACGACCTTGGAGAAAAGATATTCGTA 60.128 38.462 0.00 0.00 31.99 3.43
516 517 5.109903 CGACCTTGGAGAAAAGATATTCGT 58.890 41.667 0.00 0.00 34.46 3.85
517 518 5.109903 ACGACCTTGGAGAAAAGATATTCG 58.890 41.667 0.00 0.00 34.46 3.34
518 519 6.986904 AACGACCTTGGAGAAAAGATATTC 57.013 37.500 0.00 0.00 0.00 1.75
519 520 6.534079 CGTAACGACCTTGGAGAAAAGATATT 59.466 38.462 0.00 0.00 0.00 1.28
520 521 6.040878 CGTAACGACCTTGGAGAAAAGATAT 58.959 40.000 0.00 0.00 0.00 1.63
521 522 5.183713 TCGTAACGACCTTGGAGAAAAGATA 59.816 40.000 0.00 0.00 0.00 1.98
522 523 4.021719 TCGTAACGACCTTGGAGAAAAGAT 60.022 41.667 0.00 0.00 0.00 2.40
523 524 3.318839 TCGTAACGACCTTGGAGAAAAGA 59.681 43.478 0.00 0.00 0.00 2.52
524 525 3.645884 TCGTAACGACCTTGGAGAAAAG 58.354 45.455 0.00 0.00 0.00 2.27
525 526 3.731652 TCGTAACGACCTTGGAGAAAA 57.268 42.857 0.00 0.00 0.00 2.29
526 527 3.731652 TTCGTAACGACCTTGGAGAAA 57.268 42.857 0.00 0.00 34.89 2.52
527 528 3.947910 ATTCGTAACGACCTTGGAGAA 57.052 42.857 0.00 0.00 34.89 2.87
528 529 3.181507 CGTATTCGTAACGACCTTGGAGA 60.182 47.826 0.00 0.00 42.90 3.71
529 530 3.103738 CGTATTCGTAACGACCTTGGAG 58.896 50.000 0.00 0.00 42.90 3.86
530 531 2.159393 CCGTATTCGTAACGACCTTGGA 60.159 50.000 8.17 0.00 42.90 3.53
531 532 2.159393 TCCGTATTCGTAACGACCTTGG 60.159 50.000 8.17 0.00 42.90 3.61
532 533 2.848302 GTCCGTATTCGTAACGACCTTG 59.152 50.000 8.17 0.00 42.90 3.61
533 534 2.159379 GGTCCGTATTCGTAACGACCTT 60.159 50.000 9.54 0.00 42.90 3.50
534 535 1.401905 GGTCCGTATTCGTAACGACCT 59.598 52.381 9.54 0.00 42.90 3.85
535 536 1.401905 AGGTCCGTATTCGTAACGACC 59.598 52.381 8.99 8.99 42.90 4.79
536 537 2.832672 AGGTCCGTATTCGTAACGAC 57.167 50.000 8.17 5.33 42.90 4.34
537 538 2.287915 GCTAGGTCCGTATTCGTAACGA 59.712 50.000 8.17 0.00 42.90 3.85
538 539 2.644078 GCTAGGTCCGTATTCGTAACG 58.356 52.381 0.00 0.00 40.01 3.18
539 540 2.287915 TCGCTAGGTCCGTATTCGTAAC 59.712 50.000 0.00 0.00 35.01 2.50
540 541 2.287915 GTCGCTAGGTCCGTATTCGTAA 59.712 50.000 0.00 0.00 35.01 3.18
541 542 1.867233 GTCGCTAGGTCCGTATTCGTA 59.133 52.381 0.00 0.00 35.01 3.43
542 543 0.659957 GTCGCTAGGTCCGTATTCGT 59.340 55.000 0.00 0.00 35.01 3.85
543 544 0.659427 TGTCGCTAGGTCCGTATTCG 59.341 55.000 0.00 0.00 0.00 3.34
544 545 1.402968 TGTGTCGCTAGGTCCGTATTC 59.597 52.381 0.00 0.00 0.00 1.75
545 546 1.133790 GTGTGTCGCTAGGTCCGTATT 59.866 52.381 0.00 0.00 0.00 1.89
546 547 0.737219 GTGTGTCGCTAGGTCCGTAT 59.263 55.000 0.00 0.00 0.00 3.06
547 548 0.321919 AGTGTGTCGCTAGGTCCGTA 60.322 55.000 0.00 0.00 0.00 4.02
548 549 1.584380 GAGTGTGTCGCTAGGTCCGT 61.584 60.000 0.00 0.00 0.00 4.69
549 550 1.136984 GAGTGTGTCGCTAGGTCCG 59.863 63.158 0.00 0.00 0.00 4.79
550 551 0.601558 TTGAGTGTGTCGCTAGGTCC 59.398 55.000 0.00 0.00 0.00 4.46
551 552 1.540267 TCTTGAGTGTGTCGCTAGGTC 59.460 52.381 0.00 0.00 0.00 3.85
552 553 1.269998 GTCTTGAGTGTGTCGCTAGGT 59.730 52.381 0.00 0.00 0.00 3.08
553 554 1.542030 AGTCTTGAGTGTGTCGCTAGG 59.458 52.381 0.00 0.00 0.00 3.02
554 555 2.999507 AGTCTTGAGTGTGTCGCTAG 57.000 50.000 0.00 0.00 0.00 3.42
555 556 4.795268 CTTAAGTCTTGAGTGTGTCGCTA 58.205 43.478 0.00 0.00 0.00 4.26
556 557 3.643763 CTTAAGTCTTGAGTGTGTCGCT 58.356 45.455 0.00 0.00 0.00 4.93
557 558 2.155924 GCTTAAGTCTTGAGTGTGTCGC 59.844 50.000 4.02 0.00 0.00 5.19
558 559 3.643763 AGCTTAAGTCTTGAGTGTGTCG 58.356 45.455 4.02 0.00 0.00 4.35
559 560 4.811557 ACAAGCTTAAGTCTTGAGTGTGTC 59.188 41.667 29.85 3.98 42.52 3.67
560 561 4.770795 ACAAGCTTAAGTCTTGAGTGTGT 58.229 39.130 29.85 15.15 42.52 3.72
561 562 8.709386 ATATACAAGCTTAAGTCTTGAGTGTG 57.291 34.615 29.85 14.70 42.52 3.82
562 563 9.804758 GTATATACAAGCTTAAGTCTTGAGTGT 57.195 33.333 29.85 21.43 42.52 3.55
563 564 9.803315 TGTATATACAAGCTTAAGTCTTGAGTG 57.197 33.333 29.85 15.44 42.52 3.51
571 572 9.464714 CGAGTCAATGTATATACAAGCTTAAGT 57.535 33.333 19.11 0.00 39.99 2.24
572 573 9.464714 ACGAGTCAATGTATATACAAGCTTAAG 57.535 33.333 19.11 11.31 39.99 1.85
573 574 9.244799 CACGAGTCAATGTATATACAAGCTTAA 57.755 33.333 19.11 0.00 39.99 1.85
574 575 8.410912 ACACGAGTCAATGTATATACAAGCTTA 58.589 33.333 19.11 1.84 39.99 3.09
575 576 7.265673 ACACGAGTCAATGTATATACAAGCTT 58.734 34.615 19.11 6.99 39.99 3.74
576 577 6.806751 ACACGAGTCAATGTATATACAAGCT 58.193 36.000 19.11 13.65 39.99 3.74
577 578 7.222031 TCAACACGAGTCAATGTATATACAAGC 59.778 37.037 19.11 9.68 39.99 4.01
578 579 8.628882 TCAACACGAGTCAATGTATATACAAG 57.371 34.615 19.11 14.37 39.99 3.16
579 580 9.244799 GATCAACACGAGTCAATGTATATACAA 57.755 33.333 19.11 0.61 39.99 2.41
580 581 8.410141 TGATCAACACGAGTCAATGTATATACA 58.590 33.333 17.65 17.65 40.98 2.29
581 582 8.797266 TGATCAACACGAGTCAATGTATATAC 57.203 34.615 5.89 5.89 0.00 1.47
582 583 8.846211 TCTGATCAACACGAGTCAATGTATATA 58.154 33.333 0.00 0.00 0.00 0.86
583 584 7.716612 TCTGATCAACACGAGTCAATGTATAT 58.283 34.615 0.00 0.00 0.00 0.86
584 585 7.095695 TCTGATCAACACGAGTCAATGTATA 57.904 36.000 0.00 0.00 0.00 1.47
585 586 5.965922 TCTGATCAACACGAGTCAATGTAT 58.034 37.500 0.00 0.00 0.00 2.29
586 587 5.385509 TCTGATCAACACGAGTCAATGTA 57.614 39.130 0.00 0.00 0.00 2.29
587 588 4.257267 TCTGATCAACACGAGTCAATGT 57.743 40.909 0.00 0.00 0.00 2.71
588 589 4.433413 CGTTCTGATCAACACGAGTCAATG 60.433 45.833 17.53 0.00 0.00 2.82
589 590 3.675225 CGTTCTGATCAACACGAGTCAAT 59.325 43.478 17.53 0.00 0.00 2.57
590 591 3.049912 CGTTCTGATCAACACGAGTCAA 58.950 45.455 17.53 0.00 0.00 3.18
591 592 2.034179 ACGTTCTGATCAACACGAGTCA 59.966 45.455 25.49 0.00 0.00 3.41
592 593 2.405357 CACGTTCTGATCAACACGAGTC 59.595 50.000 25.49 5.52 0.00 3.36
593 594 2.223735 ACACGTTCTGATCAACACGAGT 60.224 45.455 25.49 21.60 0.00 4.18
594 595 2.153817 CACACGTTCTGATCAACACGAG 59.846 50.000 25.49 21.10 0.00 4.18
595 596 2.124122 CACACGTTCTGATCAACACGA 58.876 47.619 25.49 5.90 0.00 4.35
596 597 1.397190 GCACACGTTCTGATCAACACG 60.397 52.381 19.76 19.76 0.00 4.49
597 598 1.597195 TGCACACGTTCTGATCAACAC 59.403 47.619 0.00 0.00 0.00 3.32
598 599 1.946745 TGCACACGTTCTGATCAACA 58.053 45.000 0.00 0.00 0.00 3.33
599 600 3.228749 CAATGCACACGTTCTGATCAAC 58.771 45.455 0.00 0.00 0.00 3.18
600 601 2.877786 ACAATGCACACGTTCTGATCAA 59.122 40.909 0.00 0.00 0.00 2.57
601 602 2.493035 ACAATGCACACGTTCTGATCA 58.507 42.857 0.00 0.00 0.00 2.92
602 603 3.542712 AACAATGCACACGTTCTGATC 57.457 42.857 0.00 0.00 0.00 2.92
603 604 3.120683 CGTAACAATGCACACGTTCTGAT 60.121 43.478 0.00 0.00 0.00 2.90
604 605 2.219903 CGTAACAATGCACACGTTCTGA 59.780 45.455 0.00 0.00 0.00 3.27
605 606 2.219903 TCGTAACAATGCACACGTTCTG 59.780 45.455 0.00 0.00 35.91 3.02
606 607 2.220133 GTCGTAACAATGCACACGTTCT 59.780 45.455 0.00 0.00 35.91 3.01
607 608 2.556806 GTCGTAACAATGCACACGTTC 58.443 47.619 0.00 0.00 35.91 3.95
608 609 1.071107 CGTCGTAACAATGCACACGTT 60.071 47.619 0.00 0.00 35.91 3.99
609 610 0.505231 CGTCGTAACAATGCACACGT 59.495 50.000 0.00 0.00 35.91 4.49
610 611 0.505231 ACGTCGTAACAATGCACACG 59.495 50.000 0.00 0.00 35.78 4.49
611 612 2.727798 AGTACGTCGTAACAATGCACAC 59.272 45.455 6.68 0.00 0.00 3.82
612 613 2.981805 GAGTACGTCGTAACAATGCACA 59.018 45.455 6.68 0.00 0.00 4.57
613 614 2.343544 GGAGTACGTCGTAACAATGCAC 59.656 50.000 6.68 0.00 0.00 4.57
614 615 2.598589 GGAGTACGTCGTAACAATGCA 58.401 47.619 6.68 0.00 0.00 3.96
615 616 1.922545 GGGAGTACGTCGTAACAATGC 59.077 52.381 6.68 0.00 0.00 3.56
616 617 2.533266 GGGGAGTACGTCGTAACAATG 58.467 52.381 6.68 0.00 0.00 2.82
617 618 1.133025 CGGGGAGTACGTCGTAACAAT 59.867 52.381 6.68 0.00 0.00 2.71
618 619 0.521291 CGGGGAGTACGTCGTAACAA 59.479 55.000 6.68 0.00 0.00 2.83
619 620 0.605319 ACGGGGAGTACGTCGTAACA 60.605 55.000 6.68 0.00 41.25 2.41
620 621 0.521735 AACGGGGAGTACGTCGTAAC 59.478 55.000 6.68 4.62 44.83 2.50
621 622 0.802494 GAACGGGGAGTACGTCGTAA 59.198 55.000 6.68 0.00 44.83 3.18
622 623 1.024579 GGAACGGGGAGTACGTCGTA 61.025 60.000 0.00 0.00 44.83 3.43
623 624 2.335712 GGAACGGGGAGTACGTCGT 61.336 63.158 2.21 2.21 44.83 4.34
624 625 0.744414 TAGGAACGGGGAGTACGTCG 60.744 60.000 0.00 0.00 44.83 5.12
625 626 1.463674 TTAGGAACGGGGAGTACGTC 58.536 55.000 0.00 0.00 44.83 4.34
627 628 4.861102 ATATTTAGGAACGGGGAGTACG 57.139 45.455 0.00 0.00 37.36 3.67
628 629 9.565090 AAATAAATATTTAGGAACGGGGAGTAC 57.435 33.333 13.15 0.00 34.36 2.73
651 652 8.527810 TGCACTTTTAAGATTTCGGGAATAAAT 58.472 29.630 0.00 0.00 0.00 1.40
652 653 7.887381 TGCACTTTTAAGATTTCGGGAATAAA 58.113 30.769 0.00 0.00 0.00 1.40
653 654 7.455641 TGCACTTTTAAGATTTCGGGAATAA 57.544 32.000 0.00 0.00 0.00 1.40
654 655 7.479980 CATGCACTTTTAAGATTTCGGGAATA 58.520 34.615 0.00 0.00 0.00 1.75
794 834 2.173356 TGGATAAGATGCAAGAGGTGGG 59.827 50.000 0.00 0.00 0.00 4.61
939 1072 3.564218 GGAGGATCAGGGCGGCAT 61.564 66.667 12.47 0.00 36.25 4.40
1092 1261 1.201424 GGAAAGTGGAGGGATACGGT 58.799 55.000 0.00 0.00 37.60 4.83
1365 1554 0.907230 TCACCATGGATCCGACCACA 60.907 55.000 21.47 0.00 43.03 4.17
1443 1633 5.127845 TCTTCTCTATCAAGCCGACTCATTT 59.872 40.000 0.00 0.00 0.00 2.32
1569 1759 0.658829 GCATGCACGCGTACACAAAA 60.659 50.000 15.60 0.00 0.00 2.44
1585 1775 2.644798 AGTCCCCACTTAGTCAAAGCAT 59.355 45.455 0.00 0.00 38.93 3.79
1646 1836 4.059511 TCGTTGTGTGGTTACGAATCAAT 58.940 39.130 0.00 0.00 40.86 2.57
1674 1864 6.472887 CAGAAGGAACCAAACAGATAAGGTA 58.527 40.000 0.00 0.00 33.15 3.08
1682 1872 4.326504 AAATGCAGAAGGAACCAAACAG 57.673 40.909 0.00 0.00 0.00 3.16
1699 1889 8.795786 TCAATAGAAAACAAAGGACGAAAATG 57.204 30.769 0.00 0.00 0.00 2.32
1711 1901 9.906660 GGAACACATACATTCAATAGAAAACAA 57.093 29.630 0.00 0.00 37.29 2.83
1712 1902 9.295825 AGGAACACATACATTCAATAGAAAACA 57.704 29.630 0.00 0.00 37.29 2.83
1742 1932 4.576463 CCCCAAAAGACCGATAAATCTGAG 59.424 45.833 0.00 0.00 0.00 3.35
1744 1934 4.523083 TCCCCAAAAGACCGATAAATCTG 58.477 43.478 0.00 0.00 0.00 2.90
1783 1973 1.732259 GCACTCATCAACTTACACCCG 59.268 52.381 0.00 0.00 0.00 5.28
1827 2017 7.997107 TTTACACTATTGTCCATGTATCGTC 57.003 36.000 0.00 0.00 37.15 4.20
1841 2031 6.488006 GCATGGATGGTCAGATTTACACTATT 59.512 38.462 0.00 0.00 0.00 1.73
1873 2063 0.250467 AGTGGCTGTGTTGCACCTAG 60.250 55.000 0.00 0.00 32.73 3.02
1990 2180 9.448294 GACTACTATGTGTGCAACTATAACTAC 57.552 37.037 0.00 0.00 38.04 2.73
2008 2198 5.163205 TGCATGTGCCAATTAGGACTACTAT 60.163 40.000 2.07 0.00 41.22 2.12
2053 2243 3.439129 TCATATACGACTATGCGGACCAG 59.561 47.826 0.00 0.00 35.12 4.00
2069 2259 8.060931 TGCCTAGTTGCAAAACAATTCATATA 57.939 30.769 0.00 0.00 41.27 0.86
2087 2277 1.762460 ACTATGCGGCCTGCCTAGT 60.762 57.895 22.12 22.12 46.29 2.57
2152 2342 4.478206 TGGTTGGCAAGTCAATCAAAAA 57.522 36.364 0.00 0.00 35.12 1.94
2334 2530 4.020662 ACTGCTGAGAGGGTAAAAGAGAAG 60.021 45.833 0.00 0.00 0.00 2.85
2421 2617 1.308069 ACATGGTTGCCGCTTAGCAG 61.308 55.000 4.70 0.00 45.13 4.24
2465 2661 0.969149 TCAGACACGTCATCAGCCTT 59.031 50.000 0.00 0.00 0.00 4.35
2469 2665 2.156504 GCACTTTCAGACACGTCATCAG 59.843 50.000 0.00 0.00 0.00 2.90
2473 2669 2.361119 ACTAGCACTTTCAGACACGTCA 59.639 45.455 0.00 0.00 0.00 4.35
2587 2789 2.001361 TAGTCTACCTTCCGCTGCGC 62.001 60.000 18.00 0.00 0.00 6.09
2588 2790 0.248539 GTAGTCTACCTTCCGCTGCG 60.249 60.000 16.34 16.34 0.00 5.18
2858 3060 2.504175 GCCTCCCTAACCAGACATACAA 59.496 50.000 0.00 0.00 0.00 2.41
2863 3065 0.116342 TCAGCCTCCCTAACCAGACA 59.884 55.000 0.00 0.00 0.00 3.41
3145 3348 4.164221 CCTTGAGAGGATAAAGCCCTAACA 59.836 45.833 0.00 0.00 46.74 2.41
3349 3554 3.206964 TGCCGTGTGTGTTTGAAATCTA 58.793 40.909 0.00 0.00 0.00 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.