Multiple sequence alignment - TraesCS5A01G063200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G063200 chr5A 100.000 7848 0 0 1 7848 68623808 68615961 0.000000e+00 14493.0
1 TraesCS5A01G063200 chr5A 80.000 475 68 21 7392 7846 219829634 219830101 7.590000e-85 326.0
2 TraesCS5A01G063200 chr5A 85.714 175 14 7 6756 6925 478994868 478994700 2.910000e-39 174.0
3 TraesCS5A01G063200 chr5A 80.435 138 20 7 584 715 650248225 650248089 1.800000e-16 99.0
4 TraesCS5A01G063200 chr5D 94.246 7073 258 59 842 7848 73510624 73503635 0.000000e+00 10669.0
5 TraesCS5A01G063200 chr5D 85.381 472 52 12 374 841 73511480 73511022 2.560000e-129 473.0
6 TraesCS5A01G063200 chr5D 89.041 219 22 2 1 217 73511689 73511471 3.610000e-68 270.0
7 TraesCS5A01G063200 chr5D 87.059 85 10 1 7136 7220 230422129 230422046 2.330000e-15 95.3
8 TraesCS5A01G063200 chr5D 75.862 174 31 10 516 681 513697469 513697299 2.350000e-10 78.7
9 TraesCS5A01G063200 chr5B 94.100 6627 266 59 374 6956 78960627 78967172 0.000000e+00 9956.0
10 TraesCS5A01G063200 chr5B 98.160 163 3 0 217 379 455378936 455378774 1.290000e-72 285.0
11 TraesCS5A01G063200 chr5B 86.977 215 26 2 2 214 78960419 78960633 2.830000e-59 241.0
12 TraesCS5A01G063200 chr5B 80.172 116 20 3 602 715 658447031 658446917 5.050000e-12 84.2
13 TraesCS5A01G063200 chr5B 79.070 86 11 3 7146 7231 700766981 700766903 1.400000e-02 52.8
14 TraesCS5A01G063200 chr4D 77.941 544 88 16 7330 7848 9478125 9477589 2.130000e-80 311.0
15 TraesCS5A01G063200 chr4D 98.742 159 2 0 217 375 484268472 484268314 4.640000e-72 283.0
16 TraesCS5A01G063200 chr4D 98.734 158 2 0 217 374 98584807 98584650 1.670000e-71 281.0
17 TraesCS5A01G063200 chr4D 82.424 330 43 8 7531 7848 398566230 398565904 2.790000e-69 274.0
18 TraesCS5A01G063200 chr4D 87.879 99 9 3 7118 7215 370363141 370363045 6.440000e-21 113.0
19 TraesCS5A01G063200 chr7B 93.750 208 7 4 5218 5420 736630919 736631125 2.750000e-79 307.0
20 TraesCS5A01G063200 chr7B 93.269 208 8 4 5218 5420 737098558 737098352 1.280000e-77 302.0
21 TraesCS5A01G063200 chr7B 93.269 208 8 4 5218 5420 737399194 737398988 1.280000e-77 302.0
22 TraesCS5A01G063200 chr7B 92.788 208 9 4 5218 5420 738098409 738098203 5.950000e-76 296.0
23 TraesCS5A01G063200 chr3A 78.450 529 65 30 7330 7837 681644644 681645144 4.600000e-77 300.0
24 TraesCS5A01G063200 chr3A 98.750 160 2 0 216 375 392776413 392776254 1.290000e-72 285.0
25 TraesCS5A01G063200 chr3A 94.505 182 5 5 195 374 738057047 738057225 7.760000e-70 276.0
26 TraesCS5A01G063200 chr7A 99.371 159 1 0 216 374 579231301 579231459 9.960000e-74 289.0
27 TraesCS5A01G063200 chr7A 83.178 321 41 6 7531 7846 118162482 118162794 1.670000e-71 281.0
28 TraesCS5A01G063200 chr7A 98.125 160 3 0 216 375 118439991 118439832 6.000000e-71 279.0
29 TraesCS5A01G063200 chr7A 80.628 382 47 22 7481 7846 493659464 493659834 3.610000e-68 270.0
30 TraesCS5A01G063200 chr6A 98.734 158 2 0 217 374 609726258 609726415 1.670000e-71 281.0
31 TraesCS5A01G063200 chr6A 85.714 175 14 7 6756 6925 410562126 410561958 2.910000e-39 174.0
32 TraesCS5A01G063200 chr6A 86.047 172 13 7 6756 6922 580328914 580329079 2.910000e-39 174.0
33 TraesCS5A01G063200 chr6A 100.000 29 0 0 7203 7231 159938618 159938646 4.000000e-03 54.7
34 TraesCS5A01G063200 chr2A 98.734 158 2 0 217 374 680361205 680361048 1.670000e-71 281.0
35 TraesCS5A01G063200 chr6D 82.243 321 44 9 7531 7847 414103128 414102817 1.680000e-66 265.0
36 TraesCS5A01G063200 chr6D 79.487 195 39 1 7326 7519 263488265 263488071 3.820000e-28 137.0
37 TraesCS5A01G063200 chr6D 80.745 161 21 8 7065 7216 2471950 2471791 4.980000e-22 117.0
38 TraesCS5A01G063200 chr7D 83.681 288 34 10 7540 7822 181646022 181646301 7.810000e-65 259.0
39 TraesCS5A01G063200 chr7D 87.059 170 11 7 6756 6920 573395804 573395641 1.740000e-41 182.0
40 TraesCS5A01G063200 chr7D 84.615 143 19 3 7345 7486 384986593 384986733 1.060000e-28 139.0
41 TraesCS5A01G063200 chr7D 78.713 202 32 5 7324 7523 572035827 572036019 2.970000e-24 124.0
42 TraesCS5A01G063200 chr1B 82.450 302 41 8 7552 7848 632165028 632164734 3.630000e-63 254.0
43 TraesCS5A01G063200 chr1B 80.932 236 38 5 482 711 643102706 643102940 6.260000e-41 180.0
44 TraesCS5A01G063200 chr1D 83.051 236 34 6 482 712 466371908 466372142 7.980000e-50 209.0
45 TraesCS5A01G063200 chr1D 81.865 193 32 3 7330 7519 203459247 203459055 8.150000e-35 159.0
46 TraesCS5A01G063200 chrUn 85.714 175 14 7 6756 6925 332173808 332173640 2.910000e-39 174.0
47 TraesCS5A01G063200 chr6B 85.714 175 14 7 6756 6925 604748092 604747924 2.910000e-39 174.0
48 TraesCS5A01G063200 chr6B 79.082 196 36 5 7330 7523 568081752 568081560 6.390000e-26 130.0
49 TraesCS5A01G063200 chr6B 79.104 134 25 3 7133 7265 150572875 150573006 1.080000e-13 89.8
50 TraesCS5A01G063200 chr6B 79.070 86 11 3 7146 7231 663753288 663753366 1.400000e-02 52.8
51 TraesCS5A01G063200 chr4A 85.714 175 14 7 6756 6925 740821073 740820905 2.910000e-39 174.0
52 TraesCS5A01G063200 chr4A 79.188 197 35 6 7330 7523 603977427 603977620 1.780000e-26 132.0
53 TraesCS5A01G063200 chr4A 77.725 211 41 6 7058 7265 5728458 5728251 2.970000e-24 124.0
54 TraesCS5A01G063200 chr4A 85.859 99 11 3 7118 7215 93942216 93942312 1.390000e-17 102.0
55 TraesCS5A01G063200 chr3D 82.564 195 32 2 7327 7519 553932950 553933144 3.770000e-38 171.0
56 TraesCS5A01G063200 chr2B 76.606 218 39 11 472 681 212177630 212177843 8.330000e-20 110.0
57 TraesCS5A01G063200 chr2B 79.394 165 27 6 474 632 213025682 213025519 8.330000e-20 110.0
58 TraesCS5A01G063200 chr2B 96.875 32 0 1 7201 7231 31547341 31547310 1.400000e-02 52.8
59 TraesCS5A01G063200 chr4B 83.333 108 16 2 588 694 122846287 122846393 1.800000e-16 99.0
60 TraesCS5A01G063200 chr3B 96.875 32 0 1 7201 7231 671540389 671540420 1.400000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G063200 chr5A 68615961 68623808 7847 True 14493.0 14493 100.0000 1 7848 1 chr5A.!!$R1 7847
1 TraesCS5A01G063200 chr5D 73503635 73511689 8054 True 3804.0 10669 89.5560 1 7848 3 chr5D.!!$R3 7847
2 TraesCS5A01G063200 chr5B 78960419 78967172 6753 False 5098.5 9956 90.5385 2 6956 2 chr5B.!!$F1 6954
3 TraesCS5A01G063200 chr4D 9477589 9478125 536 True 311.0 311 77.9410 7330 7848 1 chr4D.!!$R1 518
4 TraesCS5A01G063200 chr3A 681644644 681645144 500 False 300.0 300 78.4500 7330 7837 1 chr3A.!!$F1 507

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
183 185 0.036010 ATTGTCCCTTCTCCACAGCG 60.036 55.000 0.00 0.00 0.00 5.18 F
219 221 0.107831 TTTCTTGGGACGTCACCAGG 59.892 55.000 18.02 20.01 39.57 4.45 F
978 1393 0.188342 ATCCAACCAACAGCAACCCT 59.812 50.000 0.00 0.00 0.00 4.34 F
1474 1900 0.034059 CTGAGGCGTCCTGTTCTGTT 59.966 55.000 3.56 0.00 31.76 3.16 F
3350 3790 0.396435 TTGCTCGTGTGGATGAACCT 59.604 50.000 0.00 0.00 39.86 3.50 F
3587 4027 0.588252 CGAGGTTCACTTTGCACCAG 59.412 55.000 0.00 0.00 36.08 4.00 F
3593 4033 0.813610 TCACTTTGCACCAGACACCG 60.814 55.000 0.00 0.00 0.00 4.94 F
4873 5315 1.064314 AGCAACAACCAACCTACCACA 60.064 47.619 0.00 0.00 0.00 4.17 F
6200 6644 0.251564 TTGTCAATTCGTGCCCCCAT 60.252 50.000 0.00 0.00 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1456 1882 0.033504 GAACAGAACAGGACGCCTCA 59.966 55.000 0.00 0.00 0.00 3.86 R
1458 1884 0.034059 CAGAACAGAACAGGACGCCT 59.966 55.000 0.00 0.00 0.00 5.52 R
2045 2485 0.248661 CAGAGCGTATGGTCCTCGTG 60.249 60.000 10.49 0.00 43.71 4.35 R
3374 3814 1.138859 CCTTGATCATACCGCTGGTCA 59.861 52.381 0.00 0.00 37.09 4.02 R
4209 4649 0.179000 GGTCTGGATGACGGAATGCT 59.821 55.000 0.00 0.00 46.24 3.79 R
5157 5599 0.388659 TGCTTCACATGCACAAACCC 59.611 50.000 0.00 0.00 35.31 4.11 R
5206 5648 2.656002 TCGATTACTAGTCAGGCTGCT 58.344 47.619 10.34 12.78 0.00 4.24 R
6655 7111 0.653636 TTGCAAGAAACGTGACCGAC 59.346 50.000 0.00 0.00 37.88 4.79 R
7246 7706 0.323178 AGAGCTGGCCATCCAAACTG 60.323 55.000 5.51 0.00 42.91 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 1.260544 GCTCATTCCCCAAAGTTGCT 58.739 50.000 0.00 0.00 0.00 3.91
54 55 1.467920 CAAGATCTGGAAGGCCAACC 58.532 55.000 5.01 8.58 45.41 3.77
88 89 6.681777 AGTGCAAATTATTCTCTTGGTTGTC 58.318 36.000 0.00 0.00 0.00 3.18
99 100 1.163420 TTGGTTGTCTGCGCGATGTT 61.163 50.000 12.10 0.00 0.00 2.71
130 132 0.915904 CTTTTTGCCGCATATGCACG 59.084 50.000 26.52 16.60 42.21 5.34
153 155 1.247567 CCTCGAAAAGTGCAACCCAT 58.752 50.000 0.00 0.00 37.80 4.00
159 161 3.731867 CGAAAAGTGCAACCCATCTATGC 60.732 47.826 0.00 0.00 37.80 3.14
181 183 1.912043 AGGATTGTCCCTTCTCCACAG 59.088 52.381 0.00 0.00 37.19 3.66
183 185 0.036010 ATTGTCCCTTCTCCACAGCG 60.036 55.000 0.00 0.00 0.00 5.18
184 186 1.118965 TTGTCCCTTCTCCACAGCGA 61.119 55.000 0.00 0.00 0.00 4.93
201 203 3.066342 CAGCGATTCAATGCCTCATCTTT 59.934 43.478 0.00 0.00 0.00 2.52
203 205 4.040376 GCGATTCAATGCCTCATCTTTTC 58.960 43.478 0.00 0.00 0.00 2.29
206 208 5.742453 CGATTCAATGCCTCATCTTTTCTTG 59.258 40.000 0.00 0.00 0.00 3.02
208 210 3.765511 TCAATGCCTCATCTTTTCTTGGG 59.234 43.478 0.00 0.00 0.00 4.12
209 211 3.744940 ATGCCTCATCTTTTCTTGGGA 57.255 42.857 0.00 0.00 0.00 4.37
210 212 2.795329 TGCCTCATCTTTTCTTGGGAC 58.205 47.619 0.00 0.00 0.00 4.46
211 213 1.740025 GCCTCATCTTTTCTTGGGACG 59.260 52.381 0.00 0.00 0.00 4.79
212 214 2.876079 GCCTCATCTTTTCTTGGGACGT 60.876 50.000 0.00 0.00 0.00 4.34
213 215 3.003480 CCTCATCTTTTCTTGGGACGTC 58.997 50.000 7.13 7.13 0.00 4.34
214 216 3.557054 CCTCATCTTTTCTTGGGACGTCA 60.557 47.826 18.91 0.00 0.00 4.35
215 217 3.399330 TCATCTTTTCTTGGGACGTCAC 58.601 45.455 18.91 15.66 0.00 3.67
216 218 2.249844 TCTTTTCTTGGGACGTCACC 57.750 50.000 16.75 15.21 0.00 4.02
217 219 1.487142 TCTTTTCTTGGGACGTCACCA 59.513 47.619 16.75 17.71 35.88 4.17
218 220 1.873591 CTTTTCTTGGGACGTCACCAG 59.126 52.381 16.75 14.51 39.57 4.00
219 221 0.107831 TTTCTTGGGACGTCACCAGG 59.892 55.000 18.02 20.01 39.57 4.45
220 222 1.764571 TTCTTGGGACGTCACCAGGG 61.765 60.000 24.65 19.68 39.57 4.45
221 223 3.246112 TTGGGACGTCACCAGGGG 61.246 66.667 16.75 0.00 39.57 4.79
227 229 4.530857 CGTCACCAGGGGCGGATC 62.531 72.222 0.00 0.00 0.00 3.36
228 230 4.176752 GTCACCAGGGGCGGATCC 62.177 72.222 0.00 0.00 0.00 3.36
229 231 4.731853 TCACCAGGGGCGGATCCA 62.732 66.667 13.41 0.00 36.21 3.41
230 232 4.181010 CACCAGGGGCGGATCCAG 62.181 72.222 13.41 5.88 36.21 3.86
231 233 4.414956 ACCAGGGGCGGATCCAGA 62.415 66.667 13.41 0.00 36.21 3.86
232 234 3.866582 CCAGGGGCGGATCCAGAC 61.867 72.222 13.41 6.73 36.21 3.51
233 235 2.765807 CAGGGGCGGATCCAGACT 60.766 66.667 13.41 0.76 36.21 3.24
234 236 2.041265 AGGGGCGGATCCAGACTT 59.959 61.111 13.41 0.00 36.21 3.01
235 237 1.048724 CAGGGGCGGATCCAGACTTA 61.049 60.000 13.41 0.00 36.21 2.24
236 238 0.326238 AGGGGCGGATCCAGACTTAA 60.326 55.000 13.41 0.00 36.21 1.85
237 239 0.544697 GGGGCGGATCCAGACTTAAA 59.455 55.000 13.41 0.00 36.21 1.52
238 240 1.064979 GGGGCGGATCCAGACTTAAAA 60.065 52.381 13.41 0.00 36.21 1.52
239 241 2.422945 GGGGCGGATCCAGACTTAAAAT 60.423 50.000 13.41 0.00 36.21 1.82
240 242 3.288092 GGGCGGATCCAGACTTAAAATT 58.712 45.455 13.41 0.00 36.21 1.82
241 243 4.457466 GGGCGGATCCAGACTTAAAATTA 58.543 43.478 13.41 0.00 36.21 1.40
242 244 4.275196 GGGCGGATCCAGACTTAAAATTAC 59.725 45.833 13.41 0.00 36.21 1.89
243 245 4.275196 GGCGGATCCAGACTTAAAATTACC 59.725 45.833 13.41 0.00 34.01 2.85
244 246 4.275196 GCGGATCCAGACTTAAAATTACCC 59.725 45.833 13.41 0.00 0.00 3.69
245 247 4.510340 CGGATCCAGACTTAAAATTACCCG 59.490 45.833 13.41 0.00 0.00 5.28
246 248 4.820173 GGATCCAGACTTAAAATTACCCGG 59.180 45.833 6.95 0.00 0.00 5.73
247 249 4.914177 TCCAGACTTAAAATTACCCGGT 57.086 40.909 0.00 0.00 0.00 5.28
248 250 4.581868 TCCAGACTTAAAATTACCCGGTG 58.418 43.478 0.00 0.00 0.00 4.94
249 251 4.041938 TCCAGACTTAAAATTACCCGGTGT 59.958 41.667 0.00 0.00 0.00 4.16
250 252 4.393990 CCAGACTTAAAATTACCCGGTGTC 59.606 45.833 0.00 0.00 0.00 3.67
251 253 4.393990 CAGACTTAAAATTACCCGGTGTCC 59.606 45.833 0.00 0.00 0.00 4.02
252 254 4.041938 AGACTTAAAATTACCCGGTGTCCA 59.958 41.667 0.00 0.00 0.00 4.02
253 255 4.925836 ACTTAAAATTACCCGGTGTCCAT 58.074 39.130 0.00 0.00 0.00 3.41
254 256 6.064735 ACTTAAAATTACCCGGTGTCCATA 57.935 37.500 0.00 0.00 0.00 2.74
255 257 6.665695 ACTTAAAATTACCCGGTGTCCATAT 58.334 36.000 0.00 0.00 0.00 1.78
256 258 7.804147 ACTTAAAATTACCCGGTGTCCATATA 58.196 34.615 0.00 0.00 0.00 0.86
257 259 7.935210 ACTTAAAATTACCCGGTGTCCATATAG 59.065 37.037 0.00 0.00 0.00 1.31
258 260 6.503560 AAAATTACCCGGTGTCCATATAGA 57.496 37.500 0.00 0.00 0.00 1.98
259 261 6.503560 AAATTACCCGGTGTCCATATAGAA 57.496 37.500 0.00 0.00 0.00 2.10
260 262 5.740290 ATTACCCGGTGTCCATATAGAAG 57.260 43.478 0.00 0.00 0.00 2.85
261 263 3.323774 ACCCGGTGTCCATATAGAAGA 57.676 47.619 0.00 0.00 0.00 2.87
262 264 3.649843 ACCCGGTGTCCATATAGAAGAA 58.350 45.455 0.00 0.00 0.00 2.52
263 265 3.387050 ACCCGGTGTCCATATAGAAGAAC 59.613 47.826 0.00 0.00 0.00 3.01
264 266 3.386726 CCCGGTGTCCATATAGAAGAACA 59.613 47.826 0.00 0.00 0.00 3.18
265 267 4.501571 CCCGGTGTCCATATAGAAGAACAG 60.502 50.000 0.00 0.00 0.00 3.16
266 268 4.341235 CCGGTGTCCATATAGAAGAACAGA 59.659 45.833 0.00 0.00 0.00 3.41
267 269 5.011125 CCGGTGTCCATATAGAAGAACAGAT 59.989 44.000 0.00 0.00 0.00 2.90
268 270 5.923114 CGGTGTCCATATAGAAGAACAGATG 59.077 44.000 0.00 0.00 0.00 2.90
269 271 5.698545 GGTGTCCATATAGAAGAACAGATGC 59.301 44.000 0.00 0.00 0.00 3.91
270 272 5.698545 GTGTCCATATAGAAGAACAGATGCC 59.301 44.000 0.00 0.00 0.00 4.40
271 273 5.604231 TGTCCATATAGAAGAACAGATGCCT 59.396 40.000 0.00 0.00 0.00 4.75
272 274 6.782494 TGTCCATATAGAAGAACAGATGCCTA 59.218 38.462 0.00 0.00 0.00 3.93
273 275 7.093992 GTCCATATAGAAGAACAGATGCCTAC 58.906 42.308 0.00 0.00 0.00 3.18
274 276 6.782494 TCCATATAGAAGAACAGATGCCTACA 59.218 38.462 0.00 0.00 0.00 2.74
275 277 7.455953 TCCATATAGAAGAACAGATGCCTACAT 59.544 37.037 0.00 0.00 39.98 2.29
276 278 8.753133 CCATATAGAAGAACAGATGCCTACATA 58.247 37.037 0.00 0.00 36.35 2.29
279 281 6.737720 AGAAGAACAGATGCCTACATATCA 57.262 37.500 0.00 0.00 36.35 2.15
280 282 7.129457 AGAAGAACAGATGCCTACATATCAA 57.871 36.000 0.00 0.00 36.35 2.57
281 283 7.568349 AGAAGAACAGATGCCTACATATCAAA 58.432 34.615 0.00 0.00 36.35 2.69
282 284 7.497249 AGAAGAACAGATGCCTACATATCAAAC 59.503 37.037 0.00 0.00 36.35 2.93
283 285 6.653020 AGAACAGATGCCTACATATCAAACA 58.347 36.000 0.00 0.00 36.35 2.83
284 286 7.112122 AGAACAGATGCCTACATATCAAACAA 58.888 34.615 0.00 0.00 36.35 2.83
285 287 7.776969 AGAACAGATGCCTACATATCAAACAAT 59.223 33.333 0.00 0.00 36.35 2.71
286 288 7.886629 ACAGATGCCTACATATCAAACAATT 57.113 32.000 0.00 0.00 36.35 2.32
287 289 7.709947 ACAGATGCCTACATATCAAACAATTG 58.290 34.615 3.24 3.24 36.35 2.32
288 290 7.557358 ACAGATGCCTACATATCAAACAATTGA 59.443 33.333 13.59 0.00 42.45 2.57
289 291 8.407832 CAGATGCCTACATATCAAACAATTGAA 58.592 33.333 13.59 0.00 41.95 2.69
290 292 9.139734 AGATGCCTACATATCAAACAATTGAAT 57.860 29.630 13.59 2.86 41.95 2.57
291 293 9.188588 GATGCCTACATATCAAACAATTGAATG 57.811 33.333 13.59 10.40 41.95 2.67
299 301 5.132897 TCAAACAATTGAATGGCCTACAC 57.867 39.130 13.59 0.00 42.47 2.90
300 302 4.586421 TCAAACAATTGAATGGCCTACACA 59.414 37.500 13.59 0.00 42.47 3.72
301 303 4.519540 AACAATTGAATGGCCTACACAC 57.480 40.909 13.59 0.00 0.00 3.82
302 304 3.766545 ACAATTGAATGGCCTACACACT 58.233 40.909 13.59 0.00 0.00 3.55
303 305 4.917385 ACAATTGAATGGCCTACACACTA 58.083 39.130 13.59 0.00 0.00 2.74
304 306 5.321102 ACAATTGAATGGCCTACACACTAA 58.679 37.500 13.59 0.00 0.00 2.24
305 307 5.415701 ACAATTGAATGGCCTACACACTAAG 59.584 40.000 13.59 0.00 0.00 2.18
306 308 2.985896 TGAATGGCCTACACACTAAGC 58.014 47.619 3.32 0.00 0.00 3.09
307 309 2.571653 TGAATGGCCTACACACTAAGCT 59.428 45.455 3.32 0.00 0.00 3.74
308 310 3.772572 TGAATGGCCTACACACTAAGCTA 59.227 43.478 3.32 0.00 0.00 3.32
309 311 4.224147 TGAATGGCCTACACACTAAGCTAA 59.776 41.667 3.32 0.00 0.00 3.09
310 312 5.104527 TGAATGGCCTACACACTAAGCTAAT 60.105 40.000 3.32 0.00 0.00 1.73
311 313 6.099125 TGAATGGCCTACACACTAAGCTAATA 59.901 38.462 3.32 0.00 0.00 0.98
312 314 5.943349 TGGCCTACACACTAAGCTAATAA 57.057 39.130 3.32 0.00 0.00 1.40
313 315 5.914033 TGGCCTACACACTAAGCTAATAAG 58.086 41.667 3.32 0.00 0.00 1.73
314 316 5.424252 TGGCCTACACACTAAGCTAATAAGT 59.576 40.000 3.32 0.00 0.00 2.24
315 317 5.753921 GGCCTACACACTAAGCTAATAAGTG 59.246 44.000 13.77 13.77 44.89 3.16
316 318 5.234543 GCCTACACACTAAGCTAATAAGTGC 59.765 44.000 14.78 0.00 43.53 4.40
317 319 6.338146 CCTACACACTAAGCTAATAAGTGCA 58.662 40.000 14.78 0.00 43.53 4.57
318 320 6.986817 CCTACACACTAAGCTAATAAGTGCAT 59.013 38.462 14.78 8.39 43.53 3.96
319 321 6.668541 ACACACTAAGCTAATAAGTGCATG 57.331 37.500 14.78 10.69 43.53 4.06
320 322 5.065218 ACACACTAAGCTAATAAGTGCATGC 59.935 40.000 11.82 11.82 43.53 4.06
321 323 5.065090 CACACTAAGCTAATAAGTGCATGCA 59.935 40.000 18.46 18.46 43.53 3.96
322 324 5.647658 ACACTAAGCTAATAAGTGCATGCAA 59.352 36.000 24.58 7.64 43.53 4.08
323 325 6.150976 ACACTAAGCTAATAAGTGCATGCAAA 59.849 34.615 24.58 11.67 43.53 3.68
324 326 7.148018 ACACTAAGCTAATAAGTGCATGCAAAT 60.148 33.333 24.58 16.60 43.53 2.32
325 327 7.703621 CACTAAGCTAATAAGTGCATGCAAATT 59.296 33.333 24.58 22.35 34.73 1.82
326 328 6.897259 AAGCTAATAAGTGCATGCAAATTG 57.103 33.333 24.58 15.92 0.00 2.32
327 329 4.807304 AGCTAATAAGTGCATGCAAATTGC 59.193 37.500 24.58 22.63 45.29 3.56
344 346 4.248842 CACCCGGTGCCAGTGACA 62.249 66.667 4.16 0.00 33.21 3.58
345 347 4.250305 ACCCGGTGCCAGTGACAC 62.250 66.667 0.13 0.13 37.31 3.67
350 352 4.250305 GTGCCAGTGACACCGGGT 62.250 66.667 6.32 0.00 31.67 5.28
351 353 2.524640 TGCCAGTGACACCGGGTA 60.525 61.111 6.32 5.38 0.00 3.69
352 354 2.264794 GCCAGTGACACCGGGTAG 59.735 66.667 6.32 0.00 0.00 3.18
353 355 2.264794 CCAGTGACACCGGGTAGC 59.735 66.667 6.32 0.00 0.00 3.58
354 356 2.283529 CCAGTGACACCGGGTAGCT 61.284 63.158 6.32 0.00 0.00 3.32
355 357 0.968901 CCAGTGACACCGGGTAGCTA 60.969 60.000 6.32 0.00 0.00 3.32
356 358 1.112113 CAGTGACACCGGGTAGCTAT 58.888 55.000 6.32 0.00 0.00 2.97
357 359 2.304092 CAGTGACACCGGGTAGCTATA 58.696 52.381 6.32 0.00 0.00 1.31
358 360 2.034305 CAGTGACACCGGGTAGCTATAC 59.966 54.545 6.32 0.00 0.00 1.47
359 361 1.002033 GTGACACCGGGTAGCTATACG 60.002 57.143 6.32 11.66 32.24 3.06
360 362 1.312815 GACACCGGGTAGCTATACGT 58.687 55.000 6.32 0.00 32.24 3.57
361 363 2.158827 TGACACCGGGTAGCTATACGTA 60.159 50.000 6.32 0.00 32.24 3.57
362 364 2.481952 GACACCGGGTAGCTATACGTAG 59.518 54.545 6.32 11.16 32.24 3.51
371 373 3.788775 CTATACGTAGCTTCGCCCC 57.211 57.895 13.05 0.00 0.00 5.80
372 374 1.245732 CTATACGTAGCTTCGCCCCT 58.754 55.000 13.05 0.00 0.00 4.79
380 382 3.691342 CTTCGCCCCTGGACGTCA 61.691 66.667 18.91 2.63 0.00 4.35
421 423 1.133598 TCGAGTGATATCAACGCCGTT 59.866 47.619 21.13 0.00 0.00 4.44
436 438 1.475751 GCCGTTGATGACTGATGGGAT 60.476 52.381 0.00 0.00 0.00 3.85
440 442 3.474600 GTTGATGACTGATGGGATGAGG 58.525 50.000 0.00 0.00 0.00 3.86
453 455 1.137872 GGATGAGGCTAGTGGTCACTG 59.862 57.143 13.32 5.32 42.52 3.66
460 462 2.620886 GGCTAGTGGTCACTGAGGAGTA 60.621 54.545 13.32 0.00 42.52 2.59
461 463 3.292460 GCTAGTGGTCACTGAGGAGTAT 58.708 50.000 13.32 0.00 42.52 2.12
494 496 0.338467 TAGGACCCTCTTAGCTGGCA 59.662 55.000 0.00 0.00 0.00 4.92
498 500 0.771127 ACCCTCTTAGCTGGCAAACA 59.229 50.000 0.00 0.00 0.00 2.83
506 508 1.174712 AGCTGGCAAACATTCGCTGT 61.175 50.000 0.00 0.00 40.84 4.40
508 510 1.005294 CTGGCAAACATTCGCTGTGC 61.005 55.000 0.00 0.00 38.39 4.57
550 552 5.851177 CGATTTCGTTGACAATTTTAGCTGT 59.149 36.000 0.00 0.00 34.11 4.40
556 558 3.420893 TGACAATTTTAGCTGTGAGGGG 58.579 45.455 0.00 0.00 0.00 4.79
568 570 2.304180 CTGTGAGGGGATGACAACTTCT 59.696 50.000 0.00 0.00 0.00 2.85
569 571 2.711009 TGTGAGGGGATGACAACTTCTT 59.289 45.455 0.00 0.00 0.00 2.52
570 572 3.244561 TGTGAGGGGATGACAACTTCTTC 60.245 47.826 0.00 0.00 0.00 2.87
571 573 2.978978 TGAGGGGATGACAACTTCTTCA 59.021 45.455 0.00 0.00 31.26 3.02
572 574 3.008375 TGAGGGGATGACAACTTCTTCAG 59.992 47.826 0.00 0.00 31.26 3.02
584 586 7.095649 TGACAACTTCTTCAGAACAATATGACG 60.096 37.037 0.00 0.00 0.00 4.35
590 592 6.227522 TCTTCAGAACAATATGACGGTTTCA 58.772 36.000 0.00 0.00 39.11 2.69
591 593 5.856126 TCAGAACAATATGACGGTTTCAC 57.144 39.130 0.00 0.00 36.92 3.18
615 620 8.379902 CACAAGAAAGCATTTTCGTTTAAAACT 58.620 29.630 0.00 0.00 45.84 2.66
637 642 0.366871 CACCGTTTGATCTCGCGAAG 59.633 55.000 11.33 4.62 0.00 3.79
671 676 3.020984 TCAGGAAAAAGGTGTTCGCTTT 58.979 40.909 0.00 0.00 0.00 3.51
681 687 0.404040 TGTTCGCTTTCCATCCCCTT 59.596 50.000 0.00 0.00 0.00 3.95
694 700 1.053424 TCCCCTTACAGCTGACGTTT 58.947 50.000 23.35 0.00 0.00 3.60
699 705 1.601903 CTTACAGCTGACGTTTGCCAA 59.398 47.619 23.35 0.00 0.00 4.52
707 713 3.608073 GCTGACGTTTGCCAAATAACATC 59.392 43.478 0.00 0.00 0.00 3.06
724 730 5.431179 AACATCACCGTAATTCTAAGGGT 57.569 39.130 0.00 0.00 35.54 4.34
775 784 5.996669 TCTAAAGGAAAAGGACAACGTTC 57.003 39.130 0.00 0.00 0.00 3.95
817 826 1.391485 CGGCAGTCTTCATCTTTGACG 59.609 52.381 0.00 0.00 36.01 4.35
820 829 3.063180 GGCAGTCTTCATCTTTGACGATG 59.937 47.826 0.00 0.00 41.64 3.84
838 847 4.116961 CGATGGACGCATTTCTTAACCTA 58.883 43.478 0.00 0.00 34.51 3.08
840 849 5.064198 CGATGGACGCATTTCTTAACCTAAA 59.936 40.000 0.00 0.00 34.51 1.85
844 1255 5.873164 GGACGCATTTCTTAACCTAAAGAGA 59.127 40.000 0.00 0.00 36.85 3.10
873 1285 5.455056 ACGCTTCTTCTTTACTTCTCTCA 57.545 39.130 0.00 0.00 0.00 3.27
877 1289 5.867174 GCTTCTTCTTTACTTCTCTCACCTC 59.133 44.000 0.00 0.00 0.00 3.85
878 1290 6.295067 GCTTCTTCTTTACTTCTCTCACCTCT 60.295 42.308 0.00 0.00 0.00 3.69
879 1291 6.827586 TCTTCTTTACTTCTCTCACCTCTC 57.172 41.667 0.00 0.00 0.00 3.20
880 1292 5.712917 TCTTCTTTACTTCTCTCACCTCTCC 59.287 44.000 0.00 0.00 0.00 3.71
881 1293 5.263872 TCTTTACTTCTCTCACCTCTCCT 57.736 43.478 0.00 0.00 0.00 3.69
882 1294 5.646215 TCTTTACTTCTCTCACCTCTCCTT 58.354 41.667 0.00 0.00 0.00 3.36
883 1295 5.478679 TCTTTACTTCTCTCACCTCTCCTTG 59.521 44.000 0.00 0.00 0.00 3.61
884 1296 2.534990 ACTTCTCTCACCTCTCCTTGG 58.465 52.381 0.00 0.00 0.00 3.61
885 1297 1.830477 CTTCTCTCACCTCTCCTTGGG 59.170 57.143 0.00 0.00 0.00 4.12
886 1298 0.616111 TCTCTCACCTCTCCTTGGGC 60.616 60.000 0.00 0.00 0.00 5.36
887 1299 0.906756 CTCTCACCTCTCCTTGGGCA 60.907 60.000 0.00 0.00 0.00 5.36
891 1303 2.352805 CCTCTCCTTGGGCACACC 59.647 66.667 0.00 0.00 40.81 4.16
928 1340 2.087009 CCTTCGAACGCACGTCCTC 61.087 63.158 0.00 0.00 34.70 3.71
958 1373 2.743928 GTGCGAAGTCAGCCAGGG 60.744 66.667 0.00 0.00 0.00 4.45
960 1375 2.293318 TGCGAAGTCAGCCAGGGAT 61.293 57.895 0.00 0.00 0.00 3.85
962 1377 1.144936 CGAAGTCAGCCAGGGATCC 59.855 63.158 1.92 1.92 0.00 3.36
964 1379 0.620556 GAAGTCAGCCAGGGATCCAA 59.379 55.000 15.23 0.00 0.00 3.53
972 1387 0.967380 CCAGGGATCCAACCAACAGC 60.967 60.000 15.23 0.00 0.00 4.40
973 1388 0.251297 CAGGGATCCAACCAACAGCA 60.251 55.000 15.23 0.00 0.00 4.41
974 1389 0.482446 AGGGATCCAACCAACAGCAA 59.518 50.000 15.23 0.00 0.00 3.91
975 1390 0.603065 GGGATCCAACCAACAGCAAC 59.397 55.000 15.23 0.00 0.00 4.17
976 1391 0.603065 GGATCCAACCAACAGCAACC 59.397 55.000 6.95 0.00 0.00 3.77
977 1392 0.603065 GATCCAACCAACAGCAACCC 59.397 55.000 0.00 0.00 0.00 4.11
978 1393 0.188342 ATCCAACCAACAGCAACCCT 59.812 50.000 0.00 0.00 0.00 4.34
1123 1545 0.725117 CGTGTCCTATTTGGCGTTCC 59.275 55.000 0.00 0.00 35.26 3.62
1156 1579 3.288308 CTGCCGCGTTCCACTCTCT 62.288 63.158 4.92 0.00 0.00 3.10
1164 1587 0.899019 GTTCCACTCTCTCTCCCCAC 59.101 60.000 0.00 0.00 0.00 4.61
1165 1588 0.252284 TTCCACTCTCTCTCCCCACC 60.252 60.000 0.00 0.00 0.00 4.61
1167 1590 1.390125 CACTCTCTCTCCCCACCCT 59.610 63.158 0.00 0.00 0.00 4.34
1168 1591 0.252467 CACTCTCTCTCCCCACCCTT 60.252 60.000 0.00 0.00 0.00 3.95
1169 1592 0.494095 ACTCTCTCTCCCCACCCTTT 59.506 55.000 0.00 0.00 0.00 3.11
1298 1723 4.733542 CCCCGTCCCATTTGCCGT 62.734 66.667 0.00 0.00 0.00 5.68
1431 1857 4.354587 GCCCTAGCTTGATTTGATTTTCG 58.645 43.478 0.00 0.00 35.50 3.46
1434 1860 6.487103 CCCTAGCTTGATTTGATTTTCGTAC 58.513 40.000 0.00 0.00 0.00 3.67
1436 1862 7.182761 CCTAGCTTGATTTGATTTTCGTACTG 58.817 38.462 0.00 0.00 0.00 2.74
1437 1863 6.560253 AGCTTGATTTGATTTTCGTACTGT 57.440 33.333 0.00 0.00 0.00 3.55
1441 1867 7.148474 GCTTGATTTGATTTTCGTACTGTAGGA 60.148 37.037 6.14 6.14 0.00 2.94
1443 1869 7.383687 TGATTTGATTTTCGTACTGTAGGAGT 58.616 34.615 9.80 2.18 38.88 3.85
1444 1870 7.330946 TGATTTGATTTTCGTACTGTAGGAGTG 59.669 37.037 9.80 0.00 35.96 3.51
1445 1871 5.068234 TGATTTTCGTACTGTAGGAGTGG 57.932 43.478 9.80 0.00 35.96 4.00
1446 1872 4.525487 TGATTTTCGTACTGTAGGAGTGGT 59.475 41.667 9.80 0.08 35.96 4.16
1447 1873 5.711506 TGATTTTCGTACTGTAGGAGTGGTA 59.288 40.000 9.80 0.00 35.96 3.25
1449 1875 3.701205 TCGTACTGTAGGAGTGGTACA 57.299 47.619 6.14 0.00 35.96 2.90
1474 1900 0.034059 CTGAGGCGTCCTGTTCTGTT 59.966 55.000 3.56 0.00 31.76 3.16
1480 1906 2.547218 GGCGTCCTGTTCTGTTCTGTTA 60.547 50.000 0.00 0.00 0.00 2.41
1482 1908 3.746492 GCGTCCTGTTCTGTTCTGTTATT 59.254 43.478 0.00 0.00 0.00 1.40
1485 1911 4.455877 GTCCTGTTCTGTTCTGTTATTGGG 59.544 45.833 0.00 0.00 0.00 4.12
1498 1924 5.188948 TCTGTTATTGGGAGGATCTTTTCGA 59.811 40.000 0.00 0.00 33.73 3.71
1533 1961 2.402305 GCTGTCAGCTATCGAATCCAG 58.598 52.381 17.89 0.00 38.45 3.86
1551 1982 6.874288 ATCCAGCTGAGCTAATTTGATTAC 57.126 37.500 17.39 0.00 36.40 1.89
1554 1985 7.212976 TCCAGCTGAGCTAATTTGATTACTAG 58.787 38.462 17.39 0.00 36.40 2.57
1569 2000 1.640917 ACTAGTTCTTCTTCGGCCCA 58.359 50.000 0.00 0.00 0.00 5.36
1653 2085 5.567138 ACTTCTCTTGTCTGTTTTGTTGG 57.433 39.130 0.00 0.00 0.00 3.77
1685 2117 3.450457 AGAGAGATCACAGATGTTCACCC 59.550 47.826 0.00 0.00 0.00 4.61
1748 2180 2.754658 AGCCAGGGTCGGTCTACG 60.755 66.667 0.00 0.00 46.11 3.51
1843 2277 1.079543 CTCCAGTCCTCCGCTGTTG 60.080 63.158 0.00 0.00 32.41 3.33
1862 2299 1.646447 TGAAGGAGGAGGAGGAGCTTA 59.354 52.381 0.00 0.00 0.00 3.09
1913 2350 2.158623 TCAGATGAACAGCCAAGTTGGT 60.159 45.455 22.85 7.42 40.46 3.67
1985 2425 1.202818 GGTCTTGGCAGGTTTGACTCT 60.203 52.381 0.00 0.00 31.73 3.24
2045 2485 2.834034 ATCCGGCAAATTTGGTGCGC 62.834 55.000 19.47 0.00 43.18 6.09
2183 2623 2.529632 AGCTTTGGTGGGAAAATCCTC 58.470 47.619 0.00 0.00 36.57 3.71
2198 2638 0.556747 TCCTCCCTAGGCCTAGTGAC 59.443 60.000 33.00 0.00 43.31 3.67
2291 2731 1.398390 GTGCATAAAACCCTCTCGCTG 59.602 52.381 0.00 0.00 0.00 5.18
2762 3202 2.747855 GCAGCAACTTCCTCCCCG 60.748 66.667 0.00 0.00 0.00 5.73
2832 3272 2.286833 TCTGCAGACAAACTAACAACGC 59.713 45.455 13.74 0.00 0.00 4.84
2941 3381 0.663153 GCAGACACAGGTGTTGGAAC 59.337 55.000 6.51 0.00 45.05 3.62
3050 3490 6.320494 ACAAGCTATGATAAGTCTACTCCG 57.680 41.667 0.00 0.00 0.00 4.63
3173 3613 3.742327 CGCATGCCTTCTCTGATCCTTTA 60.742 47.826 13.15 0.00 0.00 1.85
3272 3712 4.424061 GACAATGTGTCAAGCTAATGCA 57.576 40.909 3.52 0.00 46.22 3.96
3339 3779 1.364626 GCCACCTCAGATTGCTCGTG 61.365 60.000 0.00 0.00 0.00 4.35
3350 3790 0.396435 TTGCTCGTGTGGATGAACCT 59.604 50.000 0.00 0.00 39.86 3.50
3569 4009 2.176369 CAGTGCACTTTTGTTGACACG 58.824 47.619 18.94 0.00 33.36 4.49
3587 4027 0.588252 CGAGGTTCACTTTGCACCAG 59.412 55.000 0.00 0.00 36.08 4.00
3592 4032 1.065551 GTTCACTTTGCACCAGACACC 59.934 52.381 0.00 0.00 0.00 4.16
3593 4033 0.813610 TCACTTTGCACCAGACACCG 60.814 55.000 0.00 0.00 0.00 4.94
3594 4034 1.095228 CACTTTGCACCAGACACCGT 61.095 55.000 0.00 0.00 0.00 4.83
3620 4060 1.417890 AGGTTGTCCTCAGGTGAGTTG 59.582 52.381 6.25 0.00 40.58 3.16
3694 4134 4.701651 TCATTCACGCTTTCTTCATGGATT 59.298 37.500 0.00 0.00 0.00 3.01
3878 4318 2.177394 TTGCGCCACAAAGATCAGTA 57.823 45.000 4.18 0.00 34.56 2.74
3916 4356 8.657387 TCCCCTGTGTATCAAAATGAAAATTA 57.343 30.769 0.00 0.00 0.00 1.40
4002 4442 4.900684 TGATCTGACCGGAAACATGTTTA 58.099 39.130 23.33 6.23 32.11 2.01
4003 4443 5.309638 TGATCTGACCGGAAACATGTTTAA 58.690 37.500 23.33 5.23 32.11 1.52
4093 4533 4.769688 TGCAGTGATGTAGGAGTAATTGG 58.230 43.478 0.00 0.00 0.00 3.16
4135 4575 8.722394 CATCAATAATGAGGACATGAATCTGAG 58.278 37.037 0.00 0.00 39.70 3.35
4171 4611 5.486735 AATGATTTTCAAATGGAGGCACA 57.513 34.783 0.00 0.00 0.00 4.57
4174 4614 4.283978 TGATTTTCAAATGGAGGCACATGT 59.716 37.500 0.00 0.00 0.00 3.21
4208 4648 6.043590 AGGATGTGACTGATAATATGCCTTCA 59.956 38.462 0.00 0.00 0.00 3.02
4209 4649 6.712095 GGATGTGACTGATAATATGCCTTCAA 59.288 38.462 0.00 0.00 0.00 2.69
4247 4687 5.945784 CAGACCAATTCCTCAGGTTGAAATA 59.054 40.000 0.00 0.00 35.36 1.40
4283 4723 4.959631 GCACCATGCAATTAATTCATCG 57.040 40.909 0.00 1.64 44.26 3.84
4424 4864 5.522315 TTCCAAATGTTAGGACCATGGTA 57.478 39.130 19.80 0.14 32.62 3.25
4871 5313 1.213182 TCAGCAACAACCAACCTACCA 59.787 47.619 0.00 0.00 0.00 3.25
4873 5315 1.064314 AGCAACAACCAACCTACCACA 60.064 47.619 0.00 0.00 0.00 4.17
4910 5352 5.611796 GCCCTTTTAGCCTTTCAATTTTG 57.388 39.130 0.00 0.00 0.00 2.44
5091 5533 5.013704 TCCTTAATTCTTGTGCCCAACTCTA 59.986 40.000 0.00 0.00 0.00 2.43
5126 5568 6.021030 ACATTTTGGGTCAGAGGTAGTAGTA 58.979 40.000 0.00 0.00 0.00 1.82
5168 5610 6.722129 TGGTTATAAAAGTAGGGTTTGTGCAT 59.278 34.615 0.00 0.00 0.00 3.96
5206 5648 4.662468 TTCCTTGTTGCTGCATGTTTAA 57.338 36.364 1.84 0.00 0.00 1.52
5497 5940 5.907391 GGTGAGTTTTGTATGTTTCTGTTCG 59.093 40.000 0.00 0.00 0.00 3.95
5666 6109 8.586570 TTGATTTGAAATGCGACAATTTACTT 57.413 26.923 0.00 0.00 29.89 2.24
5971 6414 5.425196 TTTCATCAGACTCCACATCATCA 57.575 39.130 0.00 0.00 0.00 3.07
6114 6557 0.963225 TGCGGCGCTATCATAGGTAA 59.037 50.000 33.26 4.50 0.00 2.85
6150 6594 9.277565 CCATGTCTTGTTTTTATTACGATTCAG 57.722 33.333 0.00 0.00 0.00 3.02
6200 6644 0.251564 TTGTCAATTCGTGCCCCCAT 60.252 50.000 0.00 0.00 0.00 4.00
6209 6653 2.615391 TCGTGCCCCCATATCATCTAA 58.385 47.619 0.00 0.00 0.00 2.10
6374 6827 2.455960 ATCCCGATATCCGCCCCTCA 62.456 60.000 0.00 0.00 36.84 3.86
6454 6907 0.750911 GCCCCAGGAAGCTGATGAAG 60.751 60.000 0.00 0.00 0.00 3.02
6482 6935 3.429492 TGCCATCAACCAGCAAAAGATA 58.571 40.909 0.00 0.00 32.56 1.98
6485 6938 3.698040 CCATCAACCAGCAAAAGATAGCT 59.302 43.478 0.00 0.00 42.94 3.32
6639 7095 9.982651 ATGTATGTATCTGAGTTAACATGTACC 57.017 33.333 8.61 0.00 34.54 3.34
6709 7168 3.394674 TGCGAAACTTGTGATGGTCTA 57.605 42.857 0.00 0.00 0.00 2.59
6738 7197 4.082026 CCACTCAAGCTTCTATTTTTGGGG 60.082 45.833 0.00 0.00 0.00 4.96
6794 7253 3.375782 AGCAGATGAACTGGCAAAAAC 57.624 42.857 0.00 0.00 45.82 2.43
6945 7405 3.518590 CATAAGGAACGGACCAGTACAC 58.481 50.000 0.00 0.00 0.00 2.90
6957 7417 4.142249 GGACCAGTACACAAACTTTGCTTT 60.142 41.667 1.14 0.00 0.00 3.51
6996 7456 6.948309 AGGGAACATAAACTTTGTTAGAGCAT 59.052 34.615 0.00 0.00 37.43 3.79
7074 7534 1.580845 GGCATGGCATATGAGGTCGC 61.581 60.000 15.47 1.56 0.00 5.19
7085 7545 2.602257 TGAGGTCGCCATCAAGTATG 57.398 50.000 0.00 0.00 35.15 2.39
7101 7561 4.910458 AGTATGTGGCAGTTTAGGTTCT 57.090 40.909 0.00 0.00 0.00 3.01
7113 7573 6.514541 GCAGTTTAGGTTCTTTTAGTTCACCC 60.515 42.308 0.00 0.00 0.00 4.61
7114 7574 6.771267 CAGTTTAGGTTCTTTTAGTTCACCCT 59.229 38.462 0.00 0.00 0.00 4.34
7115 7575 6.771267 AGTTTAGGTTCTTTTAGTTCACCCTG 59.229 38.462 0.00 0.00 0.00 4.45
7118 7578 3.135994 GTTCTTTTAGTTCACCCTGCGA 58.864 45.455 0.00 0.00 0.00 5.10
7127 7587 4.526970 AGTTCACCCTGCGAAATATCATT 58.473 39.130 0.00 0.00 0.00 2.57
7128 7588 4.336433 AGTTCACCCTGCGAAATATCATTG 59.664 41.667 0.00 0.00 0.00 2.82
7134 7594 3.304928 CCTGCGAAATATCATTGGGCTTC 60.305 47.826 0.00 0.00 0.00 3.86
7234 7694 3.913548 TCCATTCAAAATGTGACGGTG 57.086 42.857 0.00 0.00 35.39 4.94
7246 7706 2.486203 TGTGACGGTGCATTTATGGTTC 59.514 45.455 0.00 0.00 0.00 3.62
7247 7707 2.486203 GTGACGGTGCATTTATGGTTCA 59.514 45.455 0.00 0.00 0.00 3.18
7270 7730 2.413142 GGATGGCCAGCTCTTGCAC 61.413 63.158 22.39 0.00 42.74 4.57
7271 7731 1.676635 GATGGCCAGCTCTTGCACA 60.677 57.895 15.35 0.00 42.74 4.57
7296 7759 2.808598 TCCTCACTGGACGGATAGC 58.191 57.895 0.00 0.00 40.56 2.97
7297 7760 0.755698 TCCTCACTGGACGGATAGCC 60.756 60.000 0.00 0.00 40.56 3.93
7333 7804 2.119495 GGTTGGAGATGCTCTTAGGGA 58.881 52.381 0.00 0.00 0.00 4.20
7366 7837 3.181466 GCAACCCACAAATTTTCTCCTGT 60.181 43.478 0.00 0.00 0.00 4.00
7373 7844 5.183140 CCACAAATTTTCTCCTGTATCCGTT 59.817 40.000 0.00 0.00 0.00 4.44
7378 7849 1.944676 CTCCTGTATCCGTTCGCGC 60.945 63.158 0.00 0.00 39.70 6.86
7432 7906 1.078426 GCCGCCATCCAACTGTAGT 60.078 57.895 0.00 0.00 0.00 2.73
7580 8097 4.388499 ATTGTCGGCGCCGTTCCT 62.388 61.111 44.16 26.36 40.74 3.36
7621 8138 2.544267 CGAGAACTGAAACTTCGCCTTT 59.456 45.455 0.00 0.00 0.00 3.11
7627 8144 3.045688 CTGAAACTTCGCCTTTTTCAGC 58.954 45.455 9.64 0.00 45.49 4.26
7636 8153 1.885790 GCCTTTTTCAGCTCTGCCTCT 60.886 52.381 0.00 0.00 0.00 3.69
7643 8160 2.125188 GCTCTGCCTCTGCACTCC 60.125 66.667 0.00 0.00 44.23 3.85
7654 8173 4.400961 GCACTCCAGCTCCGCCTT 62.401 66.667 0.00 0.00 0.00 4.35
7680 8220 3.717294 GAGCCCCGGGAGCTGAAA 61.717 66.667 33.03 0.00 41.75 2.69
7731 8271 0.396139 AATTGGCCACCGATGCTCAT 60.396 50.000 3.88 0.00 0.00 2.90
7824 8364 2.161012 CGTGCACTACTCTTCCTCGTTA 59.839 50.000 16.19 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 0.247460 GCAACTTTGGGGAATGAGCC 59.753 55.000 0.00 0.00 0.00 4.70
48 49 1.168714 CACTTTGGCTCTAGGTTGGC 58.831 55.000 0.00 0.00 0.00 4.52
50 51 1.896220 TGCACTTTGGCTCTAGGTTG 58.104 50.000 0.00 0.00 34.04 3.77
54 55 7.066766 AGAGAATAATTTGCACTTTGGCTCTAG 59.933 37.037 0.00 0.00 34.04 2.43
55 56 6.886459 AGAGAATAATTTGCACTTTGGCTCTA 59.114 34.615 0.00 0.00 34.04 2.43
88 89 4.465512 GTGGCCAACATCGCGCAG 62.466 66.667 7.24 0.00 0.00 5.18
99 100 1.275856 GGCAAAAAGATCATGTGGCCA 59.724 47.619 0.00 0.00 39.88 5.36
107 108 2.426381 TGCATATGCGGCAAAAAGATCA 59.574 40.909 22.21 0.00 45.83 2.92
130 132 1.531578 GGTTGCACTTTTCGAGGTCTC 59.468 52.381 0.00 0.00 0.00 3.36
153 155 3.782523 AGAAGGGACAATCCTTGCATAGA 59.217 43.478 0.39 0.00 46.31 1.98
159 161 2.040278 TGTGGAGAAGGGACAATCCTTG 59.960 50.000 0.39 0.00 46.31 3.61
178 180 1.945394 GATGAGGCATTGAATCGCTGT 59.055 47.619 0.00 0.00 0.00 4.40
181 183 3.705043 AAAGATGAGGCATTGAATCGC 57.295 42.857 0.00 0.00 0.00 4.58
183 185 6.040878 CCAAGAAAAGATGAGGCATTGAATC 58.959 40.000 0.00 0.00 0.00 2.52
184 186 5.105064 CCCAAGAAAAGATGAGGCATTGAAT 60.105 40.000 0.00 0.00 0.00 2.57
201 203 1.752198 CCTGGTGACGTCCCAAGAA 59.248 57.895 21.32 4.58 0.00 2.52
203 205 2.347490 CCCTGGTGACGTCCCAAG 59.653 66.667 21.32 16.79 0.00 3.61
210 212 4.530857 GATCCGCCCCTGGTGACG 62.531 72.222 0.00 0.00 34.74 4.35
211 213 4.176752 GGATCCGCCCCTGGTGAC 62.177 72.222 0.00 0.00 34.74 3.67
212 214 4.731853 TGGATCCGCCCCTGGTGA 62.732 66.667 7.39 0.00 34.74 4.02
213 215 4.181010 CTGGATCCGCCCCTGGTG 62.181 72.222 7.39 0.00 34.97 4.17
214 216 4.414956 TCTGGATCCGCCCCTGGT 62.415 66.667 7.39 0.00 34.97 4.00
215 217 3.866582 GTCTGGATCCGCCCCTGG 61.867 72.222 7.39 0.00 34.97 4.45
216 218 1.048724 TAAGTCTGGATCCGCCCCTG 61.049 60.000 7.39 0.00 34.97 4.45
217 219 0.326238 TTAAGTCTGGATCCGCCCCT 60.326 55.000 7.39 0.00 34.97 4.79
218 220 0.544697 TTTAAGTCTGGATCCGCCCC 59.455 55.000 7.39 0.00 34.97 5.80
219 221 2.413310 TTTTAAGTCTGGATCCGCCC 57.587 50.000 7.39 0.00 34.97 6.13
220 222 4.275196 GGTAATTTTAAGTCTGGATCCGCC 59.725 45.833 7.39 0.00 37.10 6.13
221 223 4.275196 GGGTAATTTTAAGTCTGGATCCGC 59.725 45.833 7.39 0.00 0.00 5.54
222 224 4.510340 CGGGTAATTTTAAGTCTGGATCCG 59.490 45.833 7.39 2.06 0.00 4.18
223 225 4.820173 CCGGGTAATTTTAAGTCTGGATCC 59.180 45.833 4.20 4.20 0.00 3.36
224 226 5.296035 CACCGGGTAATTTTAAGTCTGGATC 59.704 44.000 6.32 0.00 0.00 3.36
225 227 5.190677 CACCGGGTAATTTTAAGTCTGGAT 58.809 41.667 6.32 0.00 0.00 3.41
226 228 4.041938 ACACCGGGTAATTTTAAGTCTGGA 59.958 41.667 6.32 0.00 0.00 3.86
227 229 4.329392 ACACCGGGTAATTTTAAGTCTGG 58.671 43.478 6.32 0.00 0.00 3.86
228 230 4.393990 GGACACCGGGTAATTTTAAGTCTG 59.606 45.833 6.32 0.00 0.00 3.51
229 231 4.041938 TGGACACCGGGTAATTTTAAGTCT 59.958 41.667 6.32 0.00 0.00 3.24
230 232 4.325972 TGGACACCGGGTAATTTTAAGTC 58.674 43.478 6.32 0.04 0.00 3.01
231 233 4.370094 TGGACACCGGGTAATTTTAAGT 57.630 40.909 6.32 0.00 0.00 2.24
232 234 8.152246 TCTATATGGACACCGGGTAATTTTAAG 58.848 37.037 6.32 0.00 0.00 1.85
233 235 8.032045 TCTATATGGACACCGGGTAATTTTAA 57.968 34.615 6.32 0.00 0.00 1.52
234 236 7.615039 TCTATATGGACACCGGGTAATTTTA 57.385 36.000 6.32 0.00 0.00 1.52
235 237 6.503560 TCTATATGGACACCGGGTAATTTT 57.496 37.500 6.32 0.00 0.00 1.82
236 238 6.328148 TCTTCTATATGGACACCGGGTAATTT 59.672 38.462 6.32 0.00 0.00 1.82
237 239 5.842328 TCTTCTATATGGACACCGGGTAATT 59.158 40.000 6.32 0.00 0.00 1.40
238 240 5.399991 TCTTCTATATGGACACCGGGTAAT 58.600 41.667 6.32 1.53 0.00 1.89
239 241 4.806892 TCTTCTATATGGACACCGGGTAA 58.193 43.478 6.32 0.00 0.00 2.85
240 242 4.458256 TCTTCTATATGGACACCGGGTA 57.542 45.455 6.32 0.00 0.00 3.69
241 243 3.323774 TCTTCTATATGGACACCGGGT 57.676 47.619 6.32 0.00 0.00 5.28
242 244 3.386726 TGTTCTTCTATATGGACACCGGG 59.613 47.826 6.32 0.00 0.00 5.73
243 245 4.341235 TCTGTTCTTCTATATGGACACCGG 59.659 45.833 0.00 0.00 0.00 5.28
244 246 5.515797 TCTGTTCTTCTATATGGACACCG 57.484 43.478 0.00 0.00 0.00 4.94
245 247 5.698545 GCATCTGTTCTTCTATATGGACACC 59.301 44.000 0.00 0.00 0.00 4.16
246 248 5.698545 GGCATCTGTTCTTCTATATGGACAC 59.301 44.000 0.00 0.00 0.00 3.67
247 249 5.604231 AGGCATCTGTTCTTCTATATGGACA 59.396 40.000 0.00 0.00 0.00 4.02
248 250 6.107901 AGGCATCTGTTCTTCTATATGGAC 57.892 41.667 0.00 0.00 0.00 4.02
249 251 6.782494 TGTAGGCATCTGTTCTTCTATATGGA 59.218 38.462 0.00 0.00 0.00 3.41
250 252 6.997655 TGTAGGCATCTGTTCTTCTATATGG 58.002 40.000 0.00 0.00 0.00 2.74
253 255 9.533831 TGATATGTAGGCATCTGTTCTTCTATA 57.466 33.333 0.00 0.00 36.58 1.31
254 256 8.427902 TGATATGTAGGCATCTGTTCTTCTAT 57.572 34.615 0.00 0.00 36.58 1.98
255 257 7.839680 TGATATGTAGGCATCTGTTCTTCTA 57.160 36.000 0.00 0.00 36.58 2.10
256 258 6.737720 TGATATGTAGGCATCTGTTCTTCT 57.262 37.500 0.00 0.00 36.58 2.85
257 259 7.280876 TGTTTGATATGTAGGCATCTGTTCTTC 59.719 37.037 0.00 0.00 36.58 2.87
258 260 7.112122 TGTTTGATATGTAGGCATCTGTTCTT 58.888 34.615 0.00 0.00 36.58 2.52
259 261 6.653020 TGTTTGATATGTAGGCATCTGTTCT 58.347 36.000 0.00 0.00 36.58 3.01
260 262 6.925610 TGTTTGATATGTAGGCATCTGTTC 57.074 37.500 0.00 0.00 36.58 3.18
261 263 7.886629 ATTGTTTGATATGTAGGCATCTGTT 57.113 32.000 0.00 0.00 36.58 3.16
262 264 7.557358 TCAATTGTTTGATATGTAGGCATCTGT 59.443 33.333 5.13 0.00 36.94 3.41
263 265 7.933396 TCAATTGTTTGATATGTAGGCATCTG 58.067 34.615 5.13 0.00 36.94 2.90
264 266 8.523915 TTCAATTGTTTGATATGTAGGCATCT 57.476 30.769 5.13 0.00 41.38 2.90
265 267 9.188588 CATTCAATTGTTTGATATGTAGGCATC 57.811 33.333 5.13 0.00 41.38 3.91
266 268 8.145767 CCATTCAATTGTTTGATATGTAGGCAT 58.854 33.333 5.13 0.00 41.38 4.40
267 269 7.490840 CCATTCAATTGTTTGATATGTAGGCA 58.509 34.615 5.13 0.00 41.38 4.75
268 270 6.421801 GCCATTCAATTGTTTGATATGTAGGC 59.578 38.462 5.13 0.00 41.38 3.93
269 271 6.925165 GGCCATTCAATTGTTTGATATGTAGG 59.075 38.462 5.13 0.00 41.38 3.18
270 272 7.719483 AGGCCATTCAATTGTTTGATATGTAG 58.281 34.615 5.01 0.00 41.38 2.74
271 273 7.658525 AGGCCATTCAATTGTTTGATATGTA 57.341 32.000 5.01 0.00 41.38 2.29
272 274 6.549433 AGGCCATTCAATTGTTTGATATGT 57.451 33.333 5.01 0.00 41.38 2.29
273 275 7.436080 GTGTAGGCCATTCAATTGTTTGATATG 59.564 37.037 5.01 1.90 41.38 1.78
274 276 7.123997 TGTGTAGGCCATTCAATTGTTTGATAT 59.876 33.333 5.01 0.00 41.38 1.63
275 277 6.435591 TGTGTAGGCCATTCAATTGTTTGATA 59.564 34.615 5.01 0.00 41.38 2.15
276 278 5.245751 TGTGTAGGCCATTCAATTGTTTGAT 59.754 36.000 5.01 0.00 41.38 2.57
277 279 4.586421 TGTGTAGGCCATTCAATTGTTTGA 59.414 37.500 5.01 0.00 40.09 2.69
278 280 4.685628 GTGTGTAGGCCATTCAATTGTTTG 59.314 41.667 5.01 4.54 0.00 2.93
279 281 4.588528 AGTGTGTAGGCCATTCAATTGTTT 59.411 37.500 5.01 0.00 0.00 2.83
280 282 4.151883 AGTGTGTAGGCCATTCAATTGTT 58.848 39.130 5.01 0.00 0.00 2.83
281 283 3.766545 AGTGTGTAGGCCATTCAATTGT 58.233 40.909 5.01 0.00 0.00 2.71
282 284 5.677091 GCTTAGTGTGTAGGCCATTCAATTG 60.677 44.000 5.01 0.00 0.00 2.32
283 285 4.399303 GCTTAGTGTGTAGGCCATTCAATT 59.601 41.667 5.01 0.00 0.00 2.32
284 286 3.947834 GCTTAGTGTGTAGGCCATTCAAT 59.052 43.478 5.01 0.16 0.00 2.57
285 287 3.009033 AGCTTAGTGTGTAGGCCATTCAA 59.991 43.478 5.01 0.00 0.00 2.69
286 288 2.571653 AGCTTAGTGTGTAGGCCATTCA 59.428 45.455 5.01 0.00 0.00 2.57
287 289 3.268023 AGCTTAGTGTGTAGGCCATTC 57.732 47.619 5.01 0.00 0.00 2.67
288 290 4.837093 TTAGCTTAGTGTGTAGGCCATT 57.163 40.909 5.01 0.00 0.00 3.16
289 291 6.099845 ACTTATTAGCTTAGTGTGTAGGCCAT 59.900 38.462 5.01 0.00 0.00 4.40
290 292 5.424252 ACTTATTAGCTTAGTGTGTAGGCCA 59.576 40.000 5.01 0.00 0.00 5.36
291 293 5.753921 CACTTATTAGCTTAGTGTGTAGGCC 59.246 44.000 0.00 0.00 35.65 5.19
292 294 5.234543 GCACTTATTAGCTTAGTGTGTAGGC 59.765 44.000 15.07 0.00 40.99 3.93
293 295 6.338146 TGCACTTATTAGCTTAGTGTGTAGG 58.662 40.000 15.07 0.00 40.99 3.18
294 296 7.517417 GCATGCACTTATTAGCTTAGTGTGTAG 60.517 40.741 14.21 7.82 40.99 2.74
295 297 6.257849 GCATGCACTTATTAGCTTAGTGTGTA 59.742 38.462 14.21 8.81 40.99 2.90
296 298 5.065218 GCATGCACTTATTAGCTTAGTGTGT 59.935 40.000 14.21 5.99 40.99 3.72
297 299 5.065090 TGCATGCACTTATTAGCTTAGTGTG 59.935 40.000 18.46 9.64 40.99 3.82
298 300 5.185454 TGCATGCACTTATTAGCTTAGTGT 58.815 37.500 18.46 0.00 40.99 3.55
299 301 5.739752 TGCATGCACTTATTAGCTTAGTG 57.260 39.130 18.46 2.46 41.64 2.74
300 302 6.757897 TTTGCATGCACTTATTAGCTTAGT 57.242 33.333 22.58 0.00 0.00 2.24
301 303 7.306399 GCAATTTGCATGCACTTATTAGCTTAG 60.306 37.037 22.58 8.41 44.26 2.18
302 304 6.476380 GCAATTTGCATGCACTTATTAGCTTA 59.524 34.615 22.58 0.00 44.26 3.09
303 305 5.292589 GCAATTTGCATGCACTTATTAGCTT 59.707 36.000 22.58 0.00 44.26 3.74
304 306 4.807304 GCAATTTGCATGCACTTATTAGCT 59.193 37.500 22.58 0.00 44.26 3.32
305 307 5.074430 GCAATTTGCATGCACTTATTAGC 57.926 39.130 22.58 18.97 44.26 3.09
327 329 4.248842 TGTCACTGGCACCGGGTG 62.249 66.667 22.87 22.87 36.51 4.61
328 330 4.250305 GTGTCACTGGCACCGGGT 62.250 66.667 6.32 0.00 0.00 5.28
333 335 2.781595 CTACCCGGTGTCACTGGCAC 62.782 65.000 23.63 5.11 43.40 5.01
334 336 2.524640 TACCCGGTGTCACTGGCA 60.525 61.111 23.63 11.61 43.40 4.92
335 337 2.264794 CTACCCGGTGTCACTGGC 59.735 66.667 23.63 0.00 43.40 4.85
336 338 0.968901 TAGCTACCCGGTGTCACTGG 60.969 60.000 22.31 22.31 44.36 4.00
337 339 1.112113 ATAGCTACCCGGTGTCACTG 58.888 55.000 4.68 4.68 0.00 3.66
338 340 2.305009 GTATAGCTACCCGGTGTCACT 58.695 52.381 0.00 2.18 0.00 3.41
339 341 1.002033 CGTATAGCTACCCGGTGTCAC 60.002 57.143 0.00 0.00 0.00 3.67
340 342 1.311859 CGTATAGCTACCCGGTGTCA 58.688 55.000 0.00 0.00 0.00 3.58
341 343 1.312815 ACGTATAGCTACCCGGTGTC 58.687 55.000 15.79 0.00 0.00 3.67
342 344 2.498167 CTACGTATAGCTACCCGGTGT 58.502 52.381 15.79 0.00 0.00 4.16
363 365 3.691342 TGACGTCCAGGGGCGAAG 61.691 66.667 20.42 0.00 0.00 3.79
364 366 3.998672 GTGACGTCCAGGGGCGAA 61.999 66.667 20.42 3.78 0.00 4.70
368 370 3.706373 CTGGGTGACGTCCAGGGG 61.706 72.222 14.12 0.00 45.95 4.79
372 374 1.987855 GGGATCTGGGTGACGTCCA 60.988 63.158 14.12 3.39 0.00 4.02
421 423 1.419012 GCCTCATCCCATCAGTCATCA 59.581 52.381 0.00 0.00 0.00 3.07
427 429 1.347050 CCACTAGCCTCATCCCATCAG 59.653 57.143 0.00 0.00 0.00 2.90
428 430 1.344393 ACCACTAGCCTCATCCCATCA 60.344 52.381 0.00 0.00 0.00 3.07
436 438 1.550327 CTCAGTGACCACTAGCCTCA 58.450 55.000 1.95 0.00 40.20 3.86
440 442 1.551452 ACTCCTCAGTGACCACTAGC 58.449 55.000 1.95 0.00 40.20 3.42
453 455 3.814283 AGATTACACGTCGGATACTCCTC 59.186 47.826 0.00 0.00 33.30 3.71
460 462 2.883386 GGTCCTAGATTACACGTCGGAT 59.117 50.000 0.00 0.00 0.00 4.18
461 463 2.292267 GGTCCTAGATTACACGTCGGA 58.708 52.381 0.00 0.00 0.00 4.55
494 496 0.877071 CTCCTGCACAGCGAATGTTT 59.123 50.000 0.00 0.00 41.41 2.83
498 500 1.376424 CCACTCCTGCACAGCGAAT 60.376 57.895 0.00 0.00 0.00 3.34
506 508 0.250684 TTCGAAATGCCACTCCTGCA 60.251 50.000 0.00 0.00 43.97 4.41
508 510 0.443869 CGTTCGAAATGCCACTCCTG 59.556 55.000 0.00 0.00 0.00 3.86
533 535 4.321230 CCCCTCACAGCTAAAATTGTCAAC 60.321 45.833 0.00 0.00 0.00 3.18
537 539 3.806949 TCCCCTCACAGCTAAAATTGT 57.193 42.857 0.00 0.00 0.00 2.71
540 542 3.266772 TGTCATCCCCTCACAGCTAAAAT 59.733 43.478 0.00 0.00 0.00 1.82
547 549 2.304180 AGAAGTTGTCATCCCCTCACAG 59.696 50.000 0.00 0.00 0.00 3.66
550 552 2.978978 TGAAGAAGTTGTCATCCCCTCA 59.021 45.455 0.00 0.00 0.00 3.86
556 558 8.939929 TCATATTGTTCTGAAGAAGTTGTCATC 58.060 33.333 6.16 0.00 34.27 2.92
568 570 5.760743 TGTGAAACCGTCATATTGTTCTGAA 59.239 36.000 0.00 0.00 38.90 3.02
569 571 5.301555 TGTGAAACCGTCATATTGTTCTGA 58.698 37.500 0.00 0.00 38.90 3.27
570 572 5.605564 TGTGAAACCGTCATATTGTTCTG 57.394 39.130 0.00 0.00 38.90 3.02
571 573 5.995282 TCTTGTGAAACCGTCATATTGTTCT 59.005 36.000 0.00 0.00 38.90 3.01
572 574 6.236017 TCTTGTGAAACCGTCATATTGTTC 57.764 37.500 0.00 0.00 38.90 3.18
584 586 4.803613 ACGAAAATGCTTTCTTGTGAAACC 59.196 37.500 0.00 0.00 39.10 3.27
590 592 8.379902 CAGTTTTAAACGAAAATGCTTTCTTGT 58.620 29.630 1.95 0.00 39.22 3.16
591 593 8.737770 CAGTTTTAAACGAAAATGCTTTCTTG 57.262 30.769 1.95 0.00 39.22 3.02
615 620 2.032634 GCGAGATCAAACGGTGGCA 61.033 57.895 0.00 0.00 0.00 4.92
637 642 5.748630 CCTTTTTCCTGACAGTTTTAGTTGC 59.251 40.000 0.93 0.00 0.00 4.17
650 655 2.341846 AGCGAACACCTTTTTCCTGA 57.658 45.000 0.00 0.00 0.00 3.86
671 676 1.204146 GTCAGCTGTAAGGGGATGGA 58.796 55.000 14.67 0.00 0.00 3.41
681 687 1.669604 TTTGGCAAACGTCAGCTGTA 58.330 45.000 14.67 0.00 0.00 2.74
694 700 5.650266 AGAATTACGGTGATGTTATTTGGCA 59.350 36.000 0.00 0.00 0.00 4.92
699 705 7.571025 ACCCTTAGAATTACGGTGATGTTATT 58.429 34.615 0.00 0.00 0.00 1.40
707 713 6.342906 TGTATGAACCCTTAGAATTACGGTG 58.657 40.000 0.00 0.00 0.00 4.94
748 757 7.447594 ACGTTGTCCTTTTCCTTTAGATTAGA 58.552 34.615 0.00 0.00 0.00 2.10
749 758 7.668525 ACGTTGTCCTTTTCCTTTAGATTAG 57.331 36.000 0.00 0.00 0.00 1.73
750 759 7.173735 GGAACGTTGTCCTTTTCCTTTAGATTA 59.826 37.037 5.00 0.00 35.56 1.75
751 760 6.016527 GGAACGTTGTCCTTTTCCTTTAGATT 60.017 38.462 5.00 0.00 35.56 2.40
752 761 5.472478 GGAACGTTGTCCTTTTCCTTTAGAT 59.528 40.000 5.00 0.00 35.56 1.98
753 762 4.818005 GGAACGTTGTCCTTTTCCTTTAGA 59.182 41.667 5.00 0.00 35.56 2.10
754 763 4.820173 AGGAACGTTGTCCTTTTCCTTTAG 59.180 41.667 5.00 0.00 46.42 1.85
755 764 4.577283 CAGGAACGTTGTCCTTTTCCTTTA 59.423 41.667 5.00 0.00 46.42 1.85
759 768 2.289820 GACAGGAACGTTGTCCTTTTCC 59.710 50.000 5.00 0.00 46.42 3.13
765 774 0.531311 AACCGACAGGAACGTTGTCC 60.531 55.000 5.00 0.59 41.43 4.02
775 784 1.659794 CTTGGCCAAAACCGACAGG 59.340 57.895 20.91 0.00 45.13 4.00
817 826 6.315393 TCTTTAGGTTAAGAAATGCGTCCATC 59.685 38.462 0.00 0.00 31.45 3.51
820 829 5.873164 TCTCTTTAGGTTAAGAAATGCGTCC 59.127 40.000 0.00 0.00 33.96 4.79
838 847 2.576615 AGAAGCGTTTGCCTTCTCTTT 58.423 42.857 0.00 0.00 44.31 2.52
840 849 2.147150 GAAGAAGCGTTTGCCTTCTCT 58.853 47.619 4.35 0.00 44.31 3.10
844 1255 3.883489 AGTAAAGAAGAAGCGTTTGCCTT 59.117 39.130 0.00 0.00 44.31 4.35
873 1285 2.529744 GGTGTGCCCAAGGAGAGGT 61.530 63.158 0.00 0.00 0.00 3.85
884 1296 1.227527 GCCAAAACAAGGGTGTGCC 60.228 57.895 0.00 0.00 38.27 5.01
885 1297 1.591327 CGCCAAAACAAGGGTGTGC 60.591 57.895 0.00 0.00 38.27 4.57
886 1298 1.067250 CCGCCAAAACAAGGGTGTG 59.933 57.895 0.00 0.00 38.27 3.82
887 1299 2.791868 GCCGCCAAAACAAGGGTGT 61.792 57.895 0.00 0.00 40.75 4.16
891 1303 0.597377 GAACTGCCGCCAAAACAAGG 60.597 55.000 0.00 0.00 0.00 3.61
958 1373 0.603065 GGGTTGCTGTTGGTTGGATC 59.397 55.000 0.00 0.00 0.00 3.36
960 1375 0.754957 CAGGGTTGCTGTTGGTTGGA 60.755 55.000 0.00 0.00 0.00 3.53
962 1377 1.067916 GCAGGGTTGCTGTTGGTTG 59.932 57.895 0.00 0.00 46.95 3.77
983 1398 4.208686 CTGTCTAGGTCGGCCGGC 62.209 72.222 27.83 26.31 40.50 6.13
984 1399 2.439701 TCTGTCTAGGTCGGCCGG 60.440 66.667 27.83 8.93 40.50 6.13
985 1400 2.044555 TGTCTGTCTAGGTCGGCCG 61.045 63.158 22.12 22.12 40.50 6.13
986 1401 1.248785 TGTGTCTGTCTAGGTCGGCC 61.249 60.000 0.00 0.00 0.00 6.13
987 1402 0.818296 ATGTGTCTGTCTAGGTCGGC 59.182 55.000 0.00 0.00 0.00 5.54
1031 1450 0.253044 CTGTGGTCGGTTGGATGGAT 59.747 55.000 0.00 0.00 0.00 3.41
1032 1451 1.676968 CTGTGGTCGGTTGGATGGA 59.323 57.895 0.00 0.00 0.00 3.41
1033 1452 2.040544 GCTGTGGTCGGTTGGATGG 61.041 63.158 0.00 0.00 0.00 3.51
1034 1453 1.302431 TGCTGTGGTCGGTTGGATG 60.302 57.895 0.00 0.00 0.00 3.51
1123 1545 1.154654 GCAGCGAACGAAACGGAAG 60.155 57.895 0.00 0.00 0.00 3.46
1150 1573 0.494095 AAAGGGTGGGGAGAGAGAGT 59.506 55.000 0.00 0.00 0.00 3.24
1156 1579 1.073098 GAAAGGAAAGGGTGGGGAGA 58.927 55.000 0.00 0.00 0.00 3.71
1164 1587 0.626382 GGAGGGAGGAAAGGAAAGGG 59.374 60.000 0.00 0.00 0.00 3.95
1165 1588 0.626382 GGGAGGGAGGAAAGGAAAGG 59.374 60.000 0.00 0.00 0.00 3.11
1167 1590 1.073098 GTGGGAGGGAGGAAAGGAAA 58.927 55.000 0.00 0.00 0.00 3.13
1168 1591 0.845102 GGTGGGAGGGAGGAAAGGAA 60.845 60.000 0.00 0.00 0.00 3.36
1169 1592 1.229853 GGTGGGAGGGAGGAAAGGA 60.230 63.158 0.00 0.00 0.00 3.36
1409 1835 4.142381 ACGAAAATCAAATCAAGCTAGGGC 60.142 41.667 0.00 0.00 39.06 5.19
1431 1857 4.201891 CGATGTGTACCACTCCTACAGTAC 60.202 50.000 0.00 0.00 35.11 2.73
1434 1860 2.479730 GCGATGTGTACCACTCCTACAG 60.480 54.545 0.00 0.00 35.11 2.74
1436 1862 1.749634 AGCGATGTGTACCACTCCTAC 59.250 52.381 0.00 0.00 35.11 3.18
1437 1863 1.749063 CAGCGATGTGTACCACTCCTA 59.251 52.381 0.00 0.00 35.11 2.94
1441 1867 0.532573 CCTCAGCGATGTGTACCACT 59.467 55.000 0.00 0.00 35.11 4.00
1443 1869 1.218047 GCCTCAGCGATGTGTACCA 59.782 57.895 0.00 0.00 0.00 3.25
1444 1870 4.110493 GCCTCAGCGATGTGTACC 57.890 61.111 0.00 0.00 0.00 3.34
1454 1880 1.739562 CAGAACAGGACGCCTCAGC 60.740 63.158 0.00 0.00 0.00 4.26
1455 1881 0.034059 AACAGAACAGGACGCCTCAG 59.966 55.000 0.00 0.00 0.00 3.35
1456 1882 0.033504 GAACAGAACAGGACGCCTCA 59.966 55.000 0.00 0.00 0.00 3.86
1457 1883 0.318762 AGAACAGAACAGGACGCCTC 59.681 55.000 0.00 0.00 0.00 4.70
1458 1884 0.034059 CAGAACAGAACAGGACGCCT 59.966 55.000 0.00 0.00 0.00 5.52
1459 1885 0.249911 ACAGAACAGAACAGGACGCC 60.250 55.000 0.00 0.00 0.00 5.68
1474 1900 5.188948 TCGAAAAGATCCTCCCAATAACAGA 59.811 40.000 0.00 0.00 0.00 3.41
1480 1906 5.379706 AATCTCGAAAAGATCCTCCCAAT 57.620 39.130 0.00 0.00 44.26 3.16
1482 1908 4.844349 AAATCTCGAAAAGATCCTCCCA 57.156 40.909 0.00 0.00 44.26 4.37
1506 1934 2.076100 CGATAGCTGACAGCCACAAAA 58.924 47.619 23.74 3.47 43.77 2.44
1508 1936 0.894835 TCGATAGCTGACAGCCACAA 59.105 50.000 23.74 7.77 43.77 3.33
1522 1950 5.474578 AATTAGCTCAGCTGGATTCGATA 57.525 39.130 10.31 0.00 40.10 2.92
1523 1951 4.348863 AATTAGCTCAGCTGGATTCGAT 57.651 40.909 10.31 0.00 40.10 3.59
1533 1961 8.655651 AGAACTAGTAATCAAATTAGCTCAGC 57.344 34.615 0.00 0.00 0.00 4.26
1551 1982 2.762535 TTGGGCCGAAGAAGAACTAG 57.237 50.000 0.00 0.00 0.00 2.57
1554 1985 3.119602 GGTATTTTGGGCCGAAGAAGAAC 60.120 47.826 6.27 2.38 0.00 3.01
1569 2000 3.200483 GTTCATAGGCGGTCGGTATTTT 58.800 45.455 0.00 0.00 0.00 1.82
1579 2010 1.093972 TGTGCAATGTTCATAGGCGG 58.906 50.000 0.00 0.00 0.00 6.13
1617 2048 3.995199 AGAGAAGTCGAAATGAACTGCA 58.005 40.909 0.00 0.00 0.00 4.41
1618 2049 4.212214 ACAAGAGAAGTCGAAATGAACTGC 59.788 41.667 0.00 0.00 0.00 4.40
1653 2085 2.252714 GTGATCTCTCTACCATCCCCC 58.747 57.143 0.00 0.00 0.00 5.40
1685 2117 5.320549 AGCTGCCATGAATAAGAAAACAG 57.679 39.130 0.00 0.00 0.00 3.16
1740 2172 1.134995 GGTTTCCCCTAACGTAGACCG 60.135 57.143 0.00 0.00 44.03 4.79
1741 2173 1.901833 TGGTTTCCCCTAACGTAGACC 59.098 52.381 0.00 0.00 0.00 3.85
1742 2174 2.564504 AGTGGTTTCCCCTAACGTAGAC 59.435 50.000 0.00 0.00 0.00 2.59
1743 2175 2.564062 CAGTGGTTTCCCCTAACGTAGA 59.436 50.000 0.00 0.00 0.00 2.59
1748 2180 0.404426 AGGCAGTGGTTTCCCCTAAC 59.596 55.000 0.00 0.00 0.00 2.34
1835 2269 1.078848 CCTCCTCCTTCAACAGCGG 60.079 63.158 0.00 0.00 0.00 5.52
1843 2277 2.036387 GTAAGCTCCTCCTCCTCCTTC 58.964 57.143 0.00 0.00 0.00 3.46
1862 2299 3.041701 CAATGGTGGTTGCGCTGT 58.958 55.556 9.73 0.00 0.00 4.40
1883 2320 2.810274 GCTGTTCATCTGAAGCAAGACA 59.190 45.455 0.00 0.00 34.27 3.41
1913 2350 3.374042 TTCAAGTTCTTGTGGTTGGGA 57.626 42.857 11.52 0.00 0.00 4.37
2045 2485 0.248661 CAGAGCGTATGGTCCTCGTG 60.249 60.000 10.49 0.00 43.71 4.35
2183 2623 1.833049 CCCGTCACTAGGCCTAGGG 60.833 68.421 37.09 35.19 37.92 3.53
2198 2638 1.273606 CCTACATATCTGAGCACCCCG 59.726 57.143 0.00 0.00 0.00 5.73
2267 2707 2.159517 CGAGAGGGTTTTATGCACAAGC 60.160 50.000 0.00 0.00 42.57 4.01
2291 2731 3.118408 TGATGGTATGAGGCTGGTTGTAC 60.118 47.826 0.00 0.00 0.00 2.90
2438 2878 5.011023 ACAATCATTTGGGGAGACAAGAAAC 59.989 40.000 0.00 0.00 37.15 2.78
2762 3202 2.981859 TCCTCTGTCGATTTAAGCCC 57.018 50.000 0.00 0.00 0.00 5.19
2832 3272 9.628746 TTCATATTTGTGTTCATGTTCTTGATG 57.371 29.630 0.00 0.00 0.00 3.07
2863 3303 6.416631 TGGTTTTCAAATGTGATCCATTGA 57.583 33.333 9.35 3.67 43.04 2.57
3050 3490 5.380043 TCAGAATAGAAGGGCATTTCCATC 58.620 41.667 0.00 0.00 36.21 3.51
3173 3613 4.154195 GGTTGTTCAGTGCGATCATTTAGT 59.846 41.667 0.00 0.00 0.00 2.24
3272 3712 2.093447 CCCGCTTATTGTTCTCTCCAGT 60.093 50.000 0.00 0.00 0.00 4.00
3339 3779 7.393515 AGAAACAAGGTAATTAGGTTCATCCAC 59.606 37.037 3.81 0.00 39.02 4.02
3374 3814 1.138859 CCTTGATCATACCGCTGGTCA 59.861 52.381 0.00 0.00 37.09 4.02
3569 4009 1.604278 GTCTGGTGCAAAGTGAACCTC 59.396 52.381 6.94 0.00 46.68 3.85
3587 4027 1.355210 CAACCTTGCACACGGTGTC 59.645 57.895 11.54 7.23 35.75 3.67
3592 4032 4.141144 AGGACAACCTTGCACACG 57.859 55.556 0.00 0.00 45.36 4.49
3620 4060 2.433970 ACCTGAGCTTTCTAGAGCATCC 59.566 50.000 6.73 0.00 45.12 3.51
3878 4318 0.396695 CAGGGGATGCTCCATTTGCT 60.397 55.000 4.85 0.00 38.64 3.91
3926 4366 0.395586 AACCAGAGCTGTGCACCAAA 60.396 50.000 15.69 0.00 0.00 3.28
4002 4442 2.380064 TCCTTGAAGGTGCCATTGTT 57.620 45.000 11.60 0.00 36.53 2.83
4003 4443 2.173519 CATCCTTGAAGGTGCCATTGT 58.826 47.619 11.60 0.00 36.53 2.71
4093 4533 3.763097 TGATGGTTGCACGATCAAATC 57.237 42.857 10.08 0.00 39.76 2.17
4135 4575 4.612264 AAATCATTATGCATTCTGCCCC 57.388 40.909 3.54 0.00 44.23 5.80
4152 4592 4.824289 ACATGTGCCTCCATTTGAAAATC 58.176 39.130 0.00 0.00 0.00 2.17
4171 4611 7.423844 TCAGTCACATCCTCAACTATAACAT 57.576 36.000 0.00 0.00 0.00 2.71
4208 4648 1.407437 GGTCTGGATGACGGAATGCTT 60.407 52.381 0.00 0.00 46.24 3.91
4209 4649 0.179000 GGTCTGGATGACGGAATGCT 59.821 55.000 0.00 0.00 46.24 3.79
4276 4716 5.489249 CATCATCATCCTTCTCCGATGAAT 58.511 41.667 5.15 0.00 46.81 2.57
4283 4723 5.480642 TCTTAGCATCATCATCCTTCTCC 57.519 43.478 0.00 0.00 0.00 3.71
4373 4813 6.594788 AACACAATATGCTCAACCATTCTT 57.405 33.333 0.00 0.00 0.00 2.52
4424 4864 1.407979 GCCATCTGCAGCTGCTTTATT 59.592 47.619 36.61 15.95 42.66 1.40
4545 4985 7.615582 TGAAACAAATAGACATCTTAGCTGG 57.384 36.000 0.00 0.00 0.00 4.85
4625 5066 6.206634 TGACCATACAAAAGTCAGAACAATCC 59.793 38.462 0.00 0.00 35.67 3.01
4812 5253 9.756571 ACTAGAAAGGAGTAATGGATATACGAT 57.243 33.333 0.00 0.00 0.00 3.73
4826 5267 9.674068 GAATTTCCTAAATGACTAGAAAGGAGT 57.326 33.333 0.00 0.00 34.74 3.85
4871 5313 3.790126 AGGGCCTACATTTTGGATTTGT 58.210 40.909 2.82 0.00 0.00 2.83
4873 5315 5.841267 AAAAGGGCCTACATTTTGGATTT 57.159 34.783 6.41 0.00 41.10 2.17
5021 5463 6.715464 CCGTTCATCTATTTCTGCGTATTTT 58.285 36.000 0.00 0.00 0.00 1.82
5037 5479 2.634982 TGAAAATGCTGCCGTTCATC 57.365 45.000 0.00 0.00 0.00 2.92
5126 5568 8.927675 TTATAACCAACAAGATTGTGTTAGGT 57.072 30.769 11.76 9.28 41.31 3.08
5134 5576 9.020731 ACCCTACTTTTATAACCAACAAGATTG 57.979 33.333 1.73 0.00 0.00 2.67
5153 5595 2.949177 TCACATGCACAAACCCTACT 57.051 45.000 0.00 0.00 0.00 2.57
5154 5596 2.351738 GCTTCACATGCACAAACCCTAC 60.352 50.000 0.00 0.00 0.00 3.18
5155 5597 1.885887 GCTTCACATGCACAAACCCTA 59.114 47.619 0.00 0.00 0.00 3.53
5157 5599 0.388659 TGCTTCACATGCACAAACCC 59.611 50.000 0.00 0.00 35.31 4.11
5206 5648 2.656002 TCGATTACTAGTCAGGCTGCT 58.344 47.619 10.34 12.78 0.00 4.24
6170 6614 5.149273 CACGAATTGACAAAGGATTCTGTG 58.851 41.667 0.00 0.00 34.41 3.66
6200 6644 9.082313 TCAATGCTGACTGACTATTAGATGATA 57.918 33.333 0.00 0.00 0.00 2.15
6209 6653 5.129980 TGAGGATTCAATGCTGACTGACTAT 59.870 40.000 0.00 0.00 0.00 2.12
6253 6706 2.844348 ACGATACCCCCTTCTCACAATT 59.156 45.455 0.00 0.00 0.00 2.32
6254 6707 2.434702 GACGATACCCCCTTCTCACAAT 59.565 50.000 0.00 0.00 0.00 2.71
6374 6827 2.695666 CCTATCCGTGACCTCAGTGAAT 59.304 50.000 0.00 0.00 0.00 2.57
6454 6907 1.202336 GCTGGTTGATGGCATGTAAGC 60.202 52.381 3.81 10.31 0.00 3.09
6482 6935 3.790437 CGTGGGGATCAGCCAGCT 61.790 66.667 0.00 0.00 38.95 4.24
6655 7111 0.653636 TTGCAAGAAACGTGACCGAC 59.346 50.000 0.00 0.00 37.88 4.79
6709 7168 1.428869 AGAAGCTTGAGTGGTCTGGT 58.571 50.000 2.10 0.00 0.00 4.00
6738 7197 5.768317 TGCTCATACTTTTACAACCAAAGC 58.232 37.500 0.00 0.00 35.02 3.51
6794 7253 3.157087 AGGTTCAAAAGTGGCAGTATGG 58.843 45.455 0.00 0.00 35.86 2.74
6971 7431 6.303839 TGCTCTAACAAAGTTTATGTTCCCT 58.696 36.000 0.00 0.00 41.11 4.20
7018 7478 8.040727 TGCTTGATCGGCATAATAACTATACAT 58.959 33.333 8.76 0.00 34.56 2.29
7063 7523 4.284490 ACATACTTGATGGCGACCTCATAT 59.716 41.667 0.00 0.00 40.18 1.78
7074 7534 4.336433 CCTAAACTGCCACATACTTGATGG 59.664 45.833 0.00 0.00 40.18 3.51
7085 7545 6.038936 TGAACTAAAAGAACCTAAACTGCCAC 59.961 38.462 0.00 0.00 0.00 5.01
7101 7561 5.941058 TGATATTTCGCAGGGTGAACTAAAA 59.059 36.000 0.00 0.00 31.52 1.52
7113 7573 3.316029 TGAAGCCCAATGATATTTCGCAG 59.684 43.478 0.00 0.00 0.00 5.18
7114 7574 3.286353 TGAAGCCCAATGATATTTCGCA 58.714 40.909 0.00 0.00 0.00 5.10
7115 7575 3.988379 TGAAGCCCAATGATATTTCGC 57.012 42.857 0.00 0.00 0.00 4.70
7127 7587 8.592809 ACTTGAATAATTTTTACATGAAGCCCA 58.407 29.630 0.00 0.00 0.00 5.36
7128 7588 9.435688 AACTTGAATAATTTTTACATGAAGCCC 57.564 29.630 0.00 0.00 0.00 5.19
7230 7690 3.848272 AACTGAACCATAAATGCACCG 57.152 42.857 0.00 0.00 0.00 4.94
7234 7694 5.111293 CCATCCAAACTGAACCATAAATGC 58.889 41.667 0.00 0.00 0.00 3.56
7246 7706 0.323178 AGAGCTGGCCATCCAAACTG 60.323 55.000 5.51 0.00 42.91 3.16
7247 7707 0.407139 AAGAGCTGGCCATCCAAACT 59.593 50.000 5.51 0.00 42.91 2.66
7270 7730 3.057749 TCCAGTGAGGACCAGTCTG 57.942 57.895 0.00 0.00 43.07 3.51
7295 7758 0.462759 CCTTGACTCCCGAATCAGGC 60.463 60.000 0.00 0.00 0.00 4.85
7296 7759 0.905357 ACCTTGACTCCCGAATCAGG 59.095 55.000 0.00 0.00 0.00 3.86
7297 7760 2.350522 CAACCTTGACTCCCGAATCAG 58.649 52.381 0.00 0.00 0.00 2.90
7333 7804 1.133513 TGTGGGTTGCTGTTGGAGATT 60.134 47.619 0.00 0.00 0.00 2.40
7366 7837 2.202690 CCTGTGCGCGAACGGATA 60.203 61.111 28.08 0.38 43.35 2.59
7580 8097 2.265739 GCTCATGGCCAGACACGA 59.734 61.111 13.05 1.33 34.27 4.35
7621 8138 4.709840 GCAGAGGCAGAGCTGAAA 57.290 55.556 0.85 0.00 40.72 2.69
7680 8220 2.264794 GACGTGGAGGCGGACAAT 59.735 61.111 0.00 0.00 35.98 2.71
7715 8255 2.124612 CATGAGCATCGGTGGCCA 60.125 61.111 0.00 0.00 38.61 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.