Multiple sequence alignment - TraesCS5A01G062800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G062800 chr5A 100.000 4567 0 0 1 4567 67524183 67519617 0.000000e+00 8434.0
1 TraesCS5A01G062800 chr5A 87.586 145 17 1 570 714 67523537 67523394 2.830000e-37 167.0
2 TraesCS5A01G062800 chr5A 87.671 146 15 3 647 790 67523614 67523470 2.830000e-37 167.0
3 TraesCS5A01G062800 chr5D 90.154 2011 129 40 586 2577 72912739 72910779 0.000000e+00 2553.0
4 TraesCS5A01G062800 chr5D 92.451 1338 70 18 2606 3935 72910784 72909470 0.000000e+00 1882.0
5 TraesCS5A01G062800 chr5D 78.797 1047 170 31 2223 3244 487006127 487007146 0.000000e+00 656.0
6 TraesCS5A01G062800 chr5D 77.369 1034 182 27 2215 3224 486908705 486907700 2.380000e-157 566.0
7 TraesCS5A01G062800 chr5D 76.923 1040 173 43 2215 3224 486898115 486897113 3.130000e-146 529.0
8 TraesCS5A01G062800 chr5D 78.833 600 105 12 2665 3247 487173071 487172477 7.170000e-103 385.0
9 TraesCS5A01G062800 chr5D 89.347 291 28 3 502 790 72912900 72912611 3.360000e-96 363.0
10 TraesCS5A01G062800 chr5D 85.920 348 28 14 3976 4303 72909467 72909121 7.270000e-93 351.0
11 TraesCS5A01G062800 chr5D 90.417 240 17 3 4303 4538 72909093 72908856 1.230000e-80 311.0
12 TraesCS5A01G062800 chr5D 88.356 146 14 3 570 714 72912678 72912535 6.070000e-39 172.0
13 TraesCS5A01G062800 chr5D 82.911 158 20 6 94 246 2315851 2315696 7.970000e-28 135.0
14 TraesCS5A01G062800 chr5B 89.727 2015 128 36 586 2577 79815611 79813653 0.000000e+00 2501.0
15 TraesCS5A01G062800 chr5B 92.726 1196 76 7 2606 3797 79813658 79812470 0.000000e+00 1716.0
16 TraesCS5A01G062800 chr5B 77.958 1048 178 37 2223 3247 599122950 599121933 1.410000e-169 606.0
17 TraesCS5A01G062800 chr5B 88.276 290 33 1 502 790 79815849 79815560 3.380000e-91 346.0
18 TraesCS5A01G062800 chr5B 91.770 243 12 4 4303 4538 79812005 79811764 9.470000e-87 331.0
19 TraesCS5A01G062800 chr5B 91.787 207 14 3 586 790 79815688 79815483 7.480000e-73 285.0
20 TraesCS5A01G062800 chr5B 90.345 145 13 1 647 790 79815781 79815637 6.030000e-44 189.0
21 TraesCS5A01G062800 chr5B 92.857 56 2 2 586 640 79815534 79815480 3.790000e-11 80.5
22 TraesCS5A01G062800 chr5B 95.238 42 2 0 206 247 696344837 696344878 2.950000e-07 67.6
23 TraesCS5A01G062800 chr5B 91.111 45 4 0 1944 1988 704074217 704074261 1.370000e-05 62.1
24 TraesCS5A01G062800 chr5B 96.774 31 1 0 3589 3619 79812459 79812429 8.000000e-03 52.8
25 TraesCS5A01G062800 chr3A 85.267 1086 124 21 2172 3253 100353303 100354356 0.000000e+00 1086.0
26 TraesCS5A01G062800 chr3A 80.352 1135 181 20 1046 2172 100345420 100346520 0.000000e+00 822.0
27 TraesCS5A01G062800 chr7D 76.839 1196 221 40 2070 3242 566321188 566322350 1.400000e-174 623.0
28 TraesCS5A01G062800 chr7D 86.957 92 11 1 2 93 115129230 115129320 8.080000e-18 102.0
29 TraesCS5A01G062800 chr7D 87.952 83 9 1 2 84 28342577 28342658 3.760000e-16 97.1
30 TraesCS5A01G062800 chr4A 76.825 1178 228 36 2077 3228 579527796 579526638 5.020000e-174 621.0
31 TraesCS5A01G062800 chr4A 77.733 750 146 18 1065 1804 579528955 579528217 1.510000e-119 440.0
32 TraesCS5A01G062800 chr4A 77.848 632 125 14 1183 1806 706657950 706657326 1.200000e-100 377.0
33 TraesCS5A01G062800 chr4A 89.744 78 7 1 2 79 563238361 563238437 1.050000e-16 99.0
34 TraesCS5A01G062800 chr6B 77.563 1034 190 29 2205 3227 503007499 503008501 1.830000e-163 586.0
35 TraesCS5A01G062800 chr6B 79.412 170 24 8 2 163 93825867 93826033 4.830000e-20 110.0
36 TraesCS5A01G062800 chr1B 74.965 1410 271 57 2093 3453 540138093 540139469 1.430000e-159 573.0
37 TraesCS5A01G062800 chr1A 75.650 1269 239 48 2223 3447 497751954 497753196 6.630000e-158 568.0
38 TraesCS5A01G062800 chr1A 78.291 714 142 9 1099 1804 497750301 497751009 9.010000e-122 448.0
39 TraesCS5A01G062800 chr7B 76.409 1047 203 35 2210 3242 618760620 618759604 4.050000e-145 525.0
40 TraesCS5A01G062800 chr7B 76.036 772 160 23 1073 1832 618762326 618761568 1.200000e-100 377.0
41 TraesCS5A01G062800 chr7B 76.036 772 160 23 1073 1832 618851632 618850874 1.200000e-100 377.0
42 TraesCS5A01G062800 chr7B 82.313 147 21 5 94 237 483537571 483537427 6.200000e-24 122.0
43 TraesCS5A01G062800 chr7B 95.556 45 1 1 204 247 636508680 636508636 2.280000e-08 71.3
44 TraesCS5A01G062800 chr3D 79.004 743 139 12 2223 2961 45932076 45932805 4.110000e-135 492.0
45 TraesCS5A01G062800 chr3D 89.286 112 10 2 140 249 590333631 590333742 6.160000e-29 139.0
46 TraesCS5A01G062800 chr4D 77.333 750 149 18 1065 1804 22572518 22573256 1.520000e-114 424.0
47 TraesCS5A01G062800 chr4B 77.170 749 152 16 1065 1804 34539652 34540390 7.070000e-113 418.0
48 TraesCS5A01G062800 chr7A 88.462 156 16 2 94 247 88435175 88435330 2.170000e-43 187.0
49 TraesCS5A01G062800 chr2A 72.609 690 141 35 2790 3451 81063350 81064019 2.810000e-42 183.0
50 TraesCS5A01G062800 chr2A 90.361 83 7 1 2 84 59548383 59548464 1.740000e-19 108.0
51 TraesCS5A01G062800 chr2D 83.871 155 22 2 95 247 580260205 580260052 1.320000e-30 145.0
52 TraesCS5A01G062800 chr1D 81.633 147 24 3 94 238 279122494 279122639 8.030000e-23 119.0
53 TraesCS5A01G062800 chr1D 89.157 83 8 1 2 84 439108677 439108758 8.080000e-18 102.0
54 TraesCS5A01G062800 chrUn 87.097 93 8 4 2 93 385385483 385385394 8.080000e-18 102.0
55 TraesCS5A01G062800 chr6A 87.097 93 8 4 2 93 53066212 53066123 8.080000e-18 102.0
56 TraesCS5A01G062800 chr6A 87.097 93 8 4 2 93 53070388 53070299 8.080000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G062800 chr5A 67519617 67524183 4566 True 2922.666667 8434 91.752333 1 4567 3 chr5A.!!$R1 4566
1 TraesCS5A01G062800 chr5D 72908856 72912900 4044 True 938.666667 2553 89.440833 502 4538 6 chr5D.!!$R5 4036
2 TraesCS5A01G062800 chr5D 487006127 487007146 1019 False 656.000000 656 78.797000 2223 3244 1 chr5D.!!$F1 1021
3 TraesCS5A01G062800 chr5D 486907700 486908705 1005 True 566.000000 566 77.369000 2215 3224 1 chr5D.!!$R3 1009
4 TraesCS5A01G062800 chr5D 486897113 486898115 1002 True 529.000000 529 76.923000 2215 3224 1 chr5D.!!$R2 1009
5 TraesCS5A01G062800 chr5D 487172477 487173071 594 True 385.000000 385 78.833000 2665 3247 1 chr5D.!!$R4 582
6 TraesCS5A01G062800 chr5B 79811764 79815849 4085 True 687.662500 2501 91.782750 502 4538 8 chr5B.!!$R2 4036
7 TraesCS5A01G062800 chr5B 599121933 599122950 1017 True 606.000000 606 77.958000 2223 3247 1 chr5B.!!$R1 1024
8 TraesCS5A01G062800 chr3A 100353303 100354356 1053 False 1086.000000 1086 85.267000 2172 3253 1 chr3A.!!$F2 1081
9 TraesCS5A01G062800 chr3A 100345420 100346520 1100 False 822.000000 822 80.352000 1046 2172 1 chr3A.!!$F1 1126
10 TraesCS5A01G062800 chr7D 566321188 566322350 1162 False 623.000000 623 76.839000 2070 3242 1 chr7D.!!$F3 1172
11 TraesCS5A01G062800 chr4A 579526638 579528955 2317 True 530.500000 621 77.279000 1065 3228 2 chr4A.!!$R2 2163
12 TraesCS5A01G062800 chr4A 706657326 706657950 624 True 377.000000 377 77.848000 1183 1806 1 chr4A.!!$R1 623
13 TraesCS5A01G062800 chr6B 503007499 503008501 1002 False 586.000000 586 77.563000 2205 3227 1 chr6B.!!$F2 1022
14 TraesCS5A01G062800 chr1B 540138093 540139469 1376 False 573.000000 573 74.965000 2093 3453 1 chr1B.!!$F1 1360
15 TraesCS5A01G062800 chr1A 497750301 497753196 2895 False 508.000000 568 76.970500 1099 3447 2 chr1A.!!$F1 2348
16 TraesCS5A01G062800 chr7B 618759604 618762326 2722 True 451.000000 525 76.222500 1073 3242 2 chr7B.!!$R4 2169
17 TraesCS5A01G062800 chr7B 618850874 618851632 758 True 377.000000 377 76.036000 1073 1832 1 chr7B.!!$R2 759
18 TraesCS5A01G062800 chr3D 45932076 45932805 729 False 492.000000 492 79.004000 2223 2961 1 chr3D.!!$F1 738
19 TraesCS5A01G062800 chr4D 22572518 22573256 738 False 424.000000 424 77.333000 1065 1804 1 chr4D.!!$F1 739
20 TraesCS5A01G062800 chr4B 34539652 34540390 738 False 418.000000 418 77.170000 1065 1804 1 chr4B.!!$F1 739

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
71 72 0.034896 ATTCGTGCGGGTGAAAGAGT 59.965 50.0 0.00 0.0 0.00 3.24 F
76 77 0.179234 TGCGGGTGAAAGAGTGACAA 59.821 50.0 0.00 0.0 0.00 3.18 F
457 458 0.242825 TGACGCTTTGACTAGACCGG 59.757 55.0 0.00 0.0 0.00 5.28 F
1219 1379 0.317160 ACGCGACAAGGAGATTGACA 59.683 50.0 15.93 0.0 41.83 3.58 F
1858 2982 1.621107 CCTGCGATGTTTGCATTGAC 58.379 50.0 0.00 0.0 42.32 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1200 1360 0.317160 TGTCAATCTCCTTGTCGCGT 59.683 50.000 5.77 0.0 36.20 6.01 R
1825 1995 0.387622 CGCAGGCATGACCAAACAAG 60.388 55.000 0.62 0.0 43.14 3.16 R
1837 2007 0.388778 CAATGCAAACATCGCAGGCA 60.389 50.000 0.00 0.0 43.88 4.75 R
2220 3382 1.064017 TCCACAGGCTCACAACCTTTT 60.064 47.619 0.00 0.0 34.42 2.27 R
3578 4824 0.178964 CCAGCTTGGTTTTCAGGGGA 60.179 55.000 0.00 0.0 31.35 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.731274 GTCTTTTTGGATGAGCGACTC 57.269 47.619 0.00 0.00 0.00 3.36
21 22 3.067106 GTCTTTTTGGATGAGCGACTCA 58.933 45.455 11.12 11.12 44.99 3.41
22 23 3.498397 GTCTTTTTGGATGAGCGACTCAA 59.502 43.478 12.43 0.00 44.04 3.02
23 24 3.748048 TCTTTTTGGATGAGCGACTCAAG 59.252 43.478 12.43 5.31 44.04 3.02
24 25 2.099141 TTTGGATGAGCGACTCAAGG 57.901 50.000 12.43 0.00 44.04 3.61
25 26 0.391661 TTGGATGAGCGACTCAAGGC 60.392 55.000 12.43 6.47 44.04 4.35
26 27 1.880340 GGATGAGCGACTCAAGGCG 60.880 63.158 12.43 0.00 44.04 5.52
27 28 1.153745 GATGAGCGACTCAAGGCGT 60.154 57.895 7.17 0.00 44.04 5.68
28 29 0.737715 GATGAGCGACTCAAGGCGTT 60.738 55.000 7.17 0.00 44.04 4.84
29 30 0.320771 ATGAGCGACTCAAGGCGTTT 60.321 50.000 7.17 0.00 44.04 3.60
30 31 0.531974 TGAGCGACTCAAGGCGTTTT 60.532 50.000 7.17 0.00 37.57 2.43
31 32 1.269883 TGAGCGACTCAAGGCGTTTTA 60.270 47.619 7.17 0.00 37.57 1.52
32 33 1.796459 GAGCGACTCAAGGCGTTTTAA 59.204 47.619 7.17 0.00 0.00 1.52
33 34 2.215196 AGCGACTCAAGGCGTTTTAAA 58.785 42.857 7.17 0.00 0.00 1.52
34 35 2.614983 AGCGACTCAAGGCGTTTTAAAA 59.385 40.909 7.17 0.00 0.00 1.52
35 36 3.065648 AGCGACTCAAGGCGTTTTAAAAA 59.934 39.130 7.17 0.00 0.00 1.94
61 62 8.420374 ACCATTAATAGATAATATTCGTGCGG 57.580 34.615 0.00 0.00 32.84 5.69
62 63 7.494625 ACCATTAATAGATAATATTCGTGCGGG 59.505 37.037 0.00 0.00 32.84 6.13
63 64 7.494625 CCATTAATAGATAATATTCGTGCGGGT 59.505 37.037 0.00 0.00 32.84 5.28
64 65 7.821595 TTAATAGATAATATTCGTGCGGGTG 57.178 36.000 0.00 0.00 0.00 4.61
65 66 5.654603 ATAGATAATATTCGTGCGGGTGA 57.345 39.130 0.00 0.00 0.00 4.02
66 67 4.330944 AGATAATATTCGTGCGGGTGAA 57.669 40.909 0.00 0.00 0.00 3.18
67 68 4.699637 AGATAATATTCGTGCGGGTGAAA 58.300 39.130 0.00 0.00 0.00 2.69
68 69 4.750098 AGATAATATTCGTGCGGGTGAAAG 59.250 41.667 0.00 0.00 0.00 2.62
69 70 2.684001 ATATTCGTGCGGGTGAAAGA 57.316 45.000 0.00 0.00 0.00 2.52
70 71 2.004583 TATTCGTGCGGGTGAAAGAG 57.995 50.000 0.00 0.00 0.00 2.85
71 72 0.034896 ATTCGTGCGGGTGAAAGAGT 59.965 50.000 0.00 0.00 0.00 3.24
72 73 0.878523 TTCGTGCGGGTGAAAGAGTG 60.879 55.000 0.00 0.00 0.00 3.51
73 74 1.300620 CGTGCGGGTGAAAGAGTGA 60.301 57.895 0.00 0.00 0.00 3.41
74 75 1.557443 CGTGCGGGTGAAAGAGTGAC 61.557 60.000 0.00 0.00 0.00 3.67
75 76 0.531974 GTGCGGGTGAAAGAGTGACA 60.532 55.000 0.00 0.00 0.00 3.58
76 77 0.179234 TGCGGGTGAAAGAGTGACAA 59.821 50.000 0.00 0.00 0.00 3.18
77 78 0.586802 GCGGGTGAAAGAGTGACAAC 59.413 55.000 0.00 0.00 0.00 3.32
78 79 1.948104 CGGGTGAAAGAGTGACAACA 58.052 50.000 0.00 0.00 0.00 3.33
79 80 1.597663 CGGGTGAAAGAGTGACAACAC 59.402 52.381 0.00 0.00 46.24 3.32
80 81 1.947456 GGGTGAAAGAGTGACAACACC 59.053 52.381 0.00 0.00 46.99 4.16
81 82 1.597663 GGTGAAAGAGTGACAACACCG 59.402 52.381 0.00 0.00 46.99 4.94
82 83 2.277084 GTGAAAGAGTGACAACACCGT 58.723 47.619 0.00 0.00 46.99 4.83
83 84 2.676342 GTGAAAGAGTGACAACACCGTT 59.324 45.455 0.00 0.00 46.99 4.44
84 85 3.866910 GTGAAAGAGTGACAACACCGTTA 59.133 43.478 0.00 0.00 46.99 3.18
85 86 4.025979 GTGAAAGAGTGACAACACCGTTAG 60.026 45.833 0.00 0.00 46.99 2.34
86 87 3.814005 AAGAGTGACAACACCGTTAGT 57.186 42.857 0.00 0.00 46.99 2.24
87 88 3.366440 AGAGTGACAACACCGTTAGTC 57.634 47.619 0.00 0.00 46.99 2.59
88 89 2.035576 AGAGTGACAACACCGTTAGTCC 59.964 50.000 0.00 0.00 46.99 3.85
89 90 1.758280 AGTGACAACACCGTTAGTCCA 59.242 47.619 0.00 0.00 46.99 4.02
90 91 2.168936 AGTGACAACACCGTTAGTCCAA 59.831 45.455 0.00 0.00 46.99 3.53
91 92 3.135994 GTGACAACACCGTTAGTCCAAT 58.864 45.455 0.00 0.00 40.74 3.16
92 93 3.185797 GTGACAACACCGTTAGTCCAATC 59.814 47.826 0.00 0.00 40.74 2.67
93 94 2.409975 ACAACACCGTTAGTCCAATCG 58.590 47.619 0.00 0.00 0.00 3.34
94 95 1.127951 CAACACCGTTAGTCCAATCGC 59.872 52.381 0.00 0.00 0.00 4.58
95 96 0.319083 ACACCGTTAGTCCAATCGCA 59.681 50.000 0.00 0.00 0.00 5.10
96 97 0.999406 CACCGTTAGTCCAATCGCAG 59.001 55.000 0.00 0.00 0.00 5.18
97 98 0.892755 ACCGTTAGTCCAATCGCAGA 59.107 50.000 0.00 0.00 45.75 4.26
98 99 1.135083 ACCGTTAGTCCAATCGCAGAG 60.135 52.381 0.00 0.00 43.63 3.35
99 100 1.134367 CCGTTAGTCCAATCGCAGAGA 59.866 52.381 0.00 0.00 43.63 3.10
100 101 2.223829 CCGTTAGTCCAATCGCAGAGAT 60.224 50.000 0.00 0.00 43.63 2.75
111 112 4.944619 ATCGCAGAGATTGATACCTGAA 57.055 40.909 0.00 0.00 43.63 3.02
112 113 4.313277 TCGCAGAGATTGATACCTGAAG 57.687 45.455 0.00 0.00 0.00 3.02
113 114 3.954258 TCGCAGAGATTGATACCTGAAGA 59.046 43.478 0.00 0.00 0.00 2.87
114 115 4.402474 TCGCAGAGATTGATACCTGAAGAA 59.598 41.667 0.00 0.00 0.00 2.52
115 116 4.744137 CGCAGAGATTGATACCTGAAGAAG 59.256 45.833 0.00 0.00 0.00 2.85
129 130 6.639632 CCTGAAGAAGGTGATTTCAGAAAA 57.360 37.500 13.39 0.00 46.71 2.29
130 131 7.224522 CCTGAAGAAGGTGATTTCAGAAAAT 57.775 36.000 13.39 0.00 46.71 1.82
131 132 7.664758 CCTGAAGAAGGTGATTTCAGAAAATT 58.335 34.615 13.39 0.00 46.71 1.82
132 133 8.146412 CCTGAAGAAGGTGATTTCAGAAAATTT 58.854 33.333 13.39 0.00 46.71 1.82
133 134 9.189723 CTGAAGAAGGTGATTTCAGAAAATTTC 57.810 33.333 0.00 0.00 46.71 2.17
134 135 7.862372 TGAAGAAGGTGATTTCAGAAAATTTCG 59.138 33.333 0.00 0.00 35.21 3.46
135 136 7.277174 AGAAGGTGATTTCAGAAAATTTCGT 57.723 32.000 0.00 0.00 35.21 3.85
136 137 7.716612 AGAAGGTGATTTCAGAAAATTTCGTT 58.283 30.769 0.00 0.18 35.21 3.85
137 138 8.846211 AGAAGGTGATTTCAGAAAATTTCGTTA 58.154 29.630 0.00 0.00 35.21 3.18
138 139 9.626045 GAAGGTGATTTCAGAAAATTTCGTTAT 57.374 29.630 0.00 0.00 35.21 1.89
194 195 8.477419 TTTTTGGATCTTAGGTTCAAATCAGT 57.523 30.769 0.00 0.00 0.00 3.41
195 196 7.452880 TTTGGATCTTAGGTTCAAATCAGTG 57.547 36.000 0.00 0.00 0.00 3.66
196 197 6.126863 TGGATCTTAGGTTCAAATCAGTGT 57.873 37.500 0.00 0.00 0.00 3.55
197 198 7.252612 TGGATCTTAGGTTCAAATCAGTGTA 57.747 36.000 0.00 0.00 0.00 2.90
198 199 7.861629 TGGATCTTAGGTTCAAATCAGTGTAT 58.138 34.615 0.00 0.00 0.00 2.29
199 200 7.987458 TGGATCTTAGGTTCAAATCAGTGTATC 59.013 37.037 0.00 0.00 0.00 2.24
200 201 8.207545 GGATCTTAGGTTCAAATCAGTGTATCT 58.792 37.037 0.00 0.00 0.00 1.98
201 202 8.954950 ATCTTAGGTTCAAATCAGTGTATCTG 57.045 34.615 0.00 0.00 44.85 2.90
217 218 9.809096 CAGTGTATCTGAAGTTGTTATGAGTAT 57.191 33.333 0.00 0.00 46.27 2.12
218 219 9.809096 AGTGTATCTGAAGTTGTTATGAGTATG 57.191 33.333 0.00 0.00 0.00 2.39
219 220 9.803315 GTGTATCTGAAGTTGTTATGAGTATGA 57.197 33.333 0.00 0.00 0.00 2.15
284 285 4.966249 AGAATTAGCGTAACCGAAAAAGC 58.034 39.130 0.00 0.00 35.63 3.51
285 286 4.453136 AGAATTAGCGTAACCGAAAAAGCA 59.547 37.500 0.00 0.00 35.63 3.91
286 287 4.752661 ATTAGCGTAACCGAAAAAGCAA 57.247 36.364 0.00 0.00 35.63 3.91
287 288 2.681152 AGCGTAACCGAAAAAGCAAG 57.319 45.000 0.00 0.00 35.63 4.01
288 289 1.944709 AGCGTAACCGAAAAAGCAAGT 59.055 42.857 0.00 0.00 35.63 3.16
289 290 2.356695 AGCGTAACCGAAAAAGCAAGTT 59.643 40.909 0.00 0.00 35.63 2.66
290 291 2.717519 GCGTAACCGAAAAAGCAAGTTC 59.282 45.455 0.00 0.00 35.63 3.01
291 292 3.547413 GCGTAACCGAAAAAGCAAGTTCT 60.547 43.478 0.00 0.00 35.63 3.01
292 293 3.966218 CGTAACCGAAAAAGCAAGTTCTG 59.034 43.478 0.00 0.00 35.63 3.02
293 294 4.260456 CGTAACCGAAAAAGCAAGTTCTGA 60.260 41.667 0.00 0.00 35.63 3.27
294 295 4.918810 AACCGAAAAAGCAAGTTCTGAT 57.081 36.364 0.00 0.00 0.00 2.90
295 296 6.347079 CGTAACCGAAAAAGCAAGTTCTGATA 60.347 38.462 0.00 0.00 35.63 2.15
296 297 6.575162 AACCGAAAAAGCAAGTTCTGATAT 57.425 33.333 0.00 0.00 0.00 1.63
297 298 6.575162 ACCGAAAAAGCAAGTTCTGATATT 57.425 33.333 0.00 0.00 0.00 1.28
298 299 6.981722 ACCGAAAAAGCAAGTTCTGATATTT 58.018 32.000 0.00 0.00 0.00 1.40
299 300 6.863126 ACCGAAAAAGCAAGTTCTGATATTTG 59.137 34.615 0.00 0.00 0.00 2.32
300 301 6.863126 CCGAAAAAGCAAGTTCTGATATTTGT 59.137 34.615 0.00 0.00 0.00 2.83
301 302 8.020819 CCGAAAAAGCAAGTTCTGATATTTGTA 58.979 33.333 0.00 0.00 0.00 2.41
302 303 9.559958 CGAAAAAGCAAGTTCTGATATTTGTAT 57.440 29.630 0.00 0.00 0.00 2.29
336 337 9.640974 GGATTTATTTGAATTTTTGATGATGCG 57.359 29.630 0.00 0.00 0.00 4.73
350 351 9.906660 TTTTGATGATGCGTTTTTAATAGAAGT 57.093 25.926 0.00 0.00 0.00 3.01
353 354 9.594478 TGATGATGCGTTTTTAATAGAAGTAGA 57.406 29.630 0.00 0.00 0.00 2.59
354 355 9.851043 GATGATGCGTTTTTAATAGAAGTAGAC 57.149 33.333 0.00 0.00 0.00 2.59
355 356 7.891782 TGATGCGTTTTTAATAGAAGTAGACG 58.108 34.615 0.00 0.00 0.00 4.18
356 357 7.543172 TGATGCGTTTTTAATAGAAGTAGACGT 59.457 33.333 0.00 0.00 0.00 4.34
357 358 7.642071 TGCGTTTTTAATAGAAGTAGACGTT 57.358 32.000 0.00 0.00 0.00 3.99
358 359 7.723270 TGCGTTTTTAATAGAAGTAGACGTTC 58.277 34.615 0.00 0.00 0.00 3.95
359 360 7.381948 TGCGTTTTTAATAGAAGTAGACGTTCA 59.618 33.333 0.00 0.00 0.00 3.18
360 361 8.378421 GCGTTTTTAATAGAAGTAGACGTTCAT 58.622 33.333 0.00 0.00 0.00 2.57
371 372 8.618677 AGAAGTAGACGTTCATATCAATAACGA 58.381 33.333 13.08 0.00 46.66 3.85
372 373 8.783999 AAGTAGACGTTCATATCAATAACGAG 57.216 34.615 13.08 0.00 46.66 4.18
373 374 7.361127 AGTAGACGTTCATATCAATAACGAGG 58.639 38.462 13.08 0.00 46.66 4.63
374 375 6.145338 AGACGTTCATATCAATAACGAGGT 57.855 37.500 13.08 0.00 46.66 3.85
375 376 5.977725 AGACGTTCATATCAATAACGAGGTG 59.022 40.000 13.08 0.00 46.66 4.00
376 377 5.657474 ACGTTCATATCAATAACGAGGTGT 58.343 37.500 13.08 0.00 46.66 4.16
377 378 5.747197 ACGTTCATATCAATAACGAGGTGTC 59.253 40.000 13.08 0.00 46.66 3.67
378 379 5.977725 CGTTCATATCAATAACGAGGTGTCT 59.022 40.000 0.00 0.00 46.66 3.41
379 380 7.136772 CGTTCATATCAATAACGAGGTGTCTA 58.863 38.462 0.00 0.00 46.66 2.59
380 381 7.808381 CGTTCATATCAATAACGAGGTGTCTAT 59.192 37.037 0.00 0.00 46.66 1.98
381 382 9.477484 GTTCATATCAATAACGAGGTGTCTATT 57.523 33.333 0.00 0.00 0.00 1.73
387 388 8.234136 TCAATAACGAGGTGTCTATTATGACT 57.766 34.615 0.00 0.00 37.79 3.41
388 389 8.692710 TCAATAACGAGGTGTCTATTATGACTT 58.307 33.333 0.00 0.00 37.79 3.01
389 390 8.755941 CAATAACGAGGTGTCTATTATGACTTG 58.244 37.037 0.00 0.00 37.79 3.16
390 391 5.263968 ACGAGGTGTCTATTATGACTTGG 57.736 43.478 0.00 0.00 37.79 3.61
391 392 4.099573 ACGAGGTGTCTATTATGACTTGGG 59.900 45.833 0.00 0.00 37.79 4.12
392 393 4.381411 GAGGTGTCTATTATGACTTGGGC 58.619 47.826 0.00 0.00 37.79 5.36
393 394 4.040755 AGGTGTCTATTATGACTTGGGCT 58.959 43.478 0.00 0.00 37.79 5.19
394 395 5.216622 AGGTGTCTATTATGACTTGGGCTA 58.783 41.667 0.00 0.00 37.79 3.93
395 396 5.846714 AGGTGTCTATTATGACTTGGGCTAT 59.153 40.000 0.00 0.00 37.79 2.97
396 397 5.934625 GGTGTCTATTATGACTTGGGCTATG 59.065 44.000 0.00 0.00 37.79 2.23
397 398 6.464465 GGTGTCTATTATGACTTGGGCTATGT 60.464 42.308 0.00 0.00 37.79 2.29
398 399 7.256190 GGTGTCTATTATGACTTGGGCTATGTA 60.256 40.741 0.00 0.00 37.79 2.29
399 400 7.815068 GTGTCTATTATGACTTGGGCTATGTAG 59.185 40.741 0.00 0.00 37.79 2.74
400 401 7.039011 TGTCTATTATGACTTGGGCTATGTAGG 60.039 40.741 0.00 0.00 37.79 3.18
401 402 4.974645 TTATGACTTGGGCTATGTAGGG 57.025 45.455 0.00 0.00 0.00 3.53
402 403 1.507140 TGACTTGGGCTATGTAGGGG 58.493 55.000 0.00 0.00 0.00 4.79
403 404 0.765510 GACTTGGGCTATGTAGGGGG 59.234 60.000 0.00 0.00 0.00 5.40
422 423 3.659092 CTTGCTCGGGCGCACAAA 61.659 61.111 11.77 0.00 40.09 2.83
423 424 3.879351 CTTGCTCGGGCGCACAAAC 62.879 63.158 11.77 0.00 40.09 2.93
425 426 4.389576 GCTCGGGCGCACAAACAG 62.390 66.667 11.77 0.00 0.00 3.16
426 427 4.389576 CTCGGGCGCACAAACAGC 62.390 66.667 11.77 0.00 0.00 4.40
428 429 4.688419 CGGGCGCACAAACAGCAG 62.688 66.667 11.77 0.00 0.00 4.24
432 433 3.289834 CGCACAAACAGCAGCCCT 61.290 61.111 0.00 0.00 0.00 5.19
433 434 1.965930 CGCACAAACAGCAGCCCTA 60.966 57.895 0.00 0.00 0.00 3.53
434 435 1.878775 GCACAAACAGCAGCCCTAG 59.121 57.895 0.00 0.00 0.00 3.02
435 436 0.606401 GCACAAACAGCAGCCCTAGA 60.606 55.000 0.00 0.00 0.00 2.43
436 437 1.160137 CACAAACAGCAGCCCTAGAC 58.840 55.000 0.00 0.00 0.00 2.59
437 438 1.059913 ACAAACAGCAGCCCTAGACT 58.940 50.000 0.00 0.00 0.00 3.24
438 439 1.421646 ACAAACAGCAGCCCTAGACTT 59.578 47.619 0.00 0.00 0.00 3.01
439 440 1.808945 CAAACAGCAGCCCTAGACTTG 59.191 52.381 0.00 0.00 0.00 3.16
440 441 1.352083 AACAGCAGCCCTAGACTTGA 58.648 50.000 0.00 0.00 0.00 3.02
441 442 0.610687 ACAGCAGCCCTAGACTTGAC 59.389 55.000 0.00 0.00 0.00 3.18
442 443 0.459237 CAGCAGCCCTAGACTTGACG 60.459 60.000 0.00 0.00 0.00 4.35
443 444 1.811679 GCAGCCCTAGACTTGACGC 60.812 63.158 0.00 0.00 0.00 5.19
444 445 1.893786 CAGCCCTAGACTTGACGCT 59.106 57.895 0.00 0.00 0.00 5.07
445 446 0.247736 CAGCCCTAGACTTGACGCTT 59.752 55.000 0.00 0.00 0.00 4.68
446 447 0.977395 AGCCCTAGACTTGACGCTTT 59.023 50.000 0.00 0.00 0.00 3.51
447 448 1.079503 GCCCTAGACTTGACGCTTTG 58.920 55.000 0.00 0.00 0.00 2.77
448 449 1.337823 GCCCTAGACTTGACGCTTTGA 60.338 52.381 0.00 0.00 0.00 2.69
449 450 2.338500 CCCTAGACTTGACGCTTTGAC 58.662 52.381 0.00 0.00 0.00 3.18
450 451 2.028930 CCCTAGACTTGACGCTTTGACT 60.029 50.000 0.00 0.00 0.00 3.41
451 452 3.192844 CCCTAGACTTGACGCTTTGACTA 59.807 47.826 0.00 0.00 0.00 2.59
452 453 4.416620 CCTAGACTTGACGCTTTGACTAG 58.583 47.826 0.00 0.00 0.00 2.57
453 454 4.156190 CCTAGACTTGACGCTTTGACTAGA 59.844 45.833 0.00 0.00 0.00 2.43
454 455 3.903360 AGACTTGACGCTTTGACTAGAC 58.097 45.455 0.00 0.00 0.00 2.59
455 456 2.987821 GACTTGACGCTTTGACTAGACC 59.012 50.000 0.00 0.00 0.00 3.85
456 457 1.986378 CTTGACGCTTTGACTAGACCG 59.014 52.381 0.00 0.00 0.00 4.79
457 458 0.242825 TGACGCTTTGACTAGACCGG 59.757 55.000 0.00 0.00 0.00 5.28
458 459 0.458025 GACGCTTTGACTAGACCGGG 60.458 60.000 6.32 0.00 0.00 5.73
459 460 1.810030 CGCTTTGACTAGACCGGGC 60.810 63.158 6.32 0.52 0.00 6.13
460 461 1.810030 GCTTTGACTAGACCGGGCG 60.810 63.158 6.32 0.00 0.00 6.13
461 462 1.590147 CTTTGACTAGACCGGGCGT 59.410 57.895 6.32 0.00 0.00 5.68
462 463 0.736325 CTTTGACTAGACCGGGCGTG 60.736 60.000 6.32 3.19 0.00 5.34
463 464 1.180456 TTTGACTAGACCGGGCGTGA 61.180 55.000 6.32 0.00 0.00 4.35
464 465 1.870055 TTGACTAGACCGGGCGTGAC 61.870 60.000 6.32 1.86 0.00 3.67
465 466 3.061260 GACTAGACCGGGCGTGACC 62.061 68.421 6.32 0.00 37.93 4.02
466 467 3.066190 CTAGACCGGGCGTGACCA 61.066 66.667 6.32 0.00 42.05 4.02
467 468 3.064987 CTAGACCGGGCGTGACCAG 62.065 68.421 6.32 0.00 42.05 4.00
468 469 3.572447 TAGACCGGGCGTGACCAGA 62.572 63.158 6.32 0.00 42.05 3.86
469 470 4.736896 GACCGGGCGTGACCAGAC 62.737 72.222 6.32 0.00 42.05 3.51
482 483 3.775654 CAGACCGGGCTGGGACTC 61.776 72.222 31.05 2.30 44.64 3.36
542 543 1.227380 CAGGTCGAGTATGCAGGGC 60.227 63.158 0.00 0.00 0.00 5.19
548 549 4.530857 AGTATGCAGGGCGTCGGC 62.531 66.667 10.88 10.88 37.09 5.54
584 585 4.671590 TGGGAGTCGACCTGCGGA 62.672 66.667 13.01 0.00 41.33 5.54
774 910 2.087009 GTCGAGGCGACGAGGTTTG 61.087 63.158 9.69 0.00 46.56 2.93
783 919 3.121030 CGAGGTTTGCAGGCGGAG 61.121 66.667 0.00 0.00 0.00 4.63
825 961 4.088071 GCGCGAAGAAAGGTAACATTTTTC 59.912 41.667 12.10 0.00 35.67 2.29
827 963 4.921515 GCGAAGAAAGGTAACATTTTTCCC 59.078 41.667 0.00 0.00 35.62 3.97
867 1015 1.673009 TTTGGGAATCCGACCGTGC 60.673 57.895 0.00 0.00 35.24 5.34
871 1019 0.878961 GGGAATCCGACCGTGCATAC 60.879 60.000 0.00 0.00 0.00 2.39
874 1022 2.210116 GAATCCGACCGTGCATACAAT 58.790 47.619 0.00 0.00 0.00 2.71
889 1037 7.162546 CGTGCATACAATTTCAAAGTCTAATCG 59.837 37.037 0.00 0.00 0.00 3.34
901 1049 7.239271 TCAAAGTCTAATCGTAGTAGAACACG 58.761 38.462 0.00 0.00 39.48 4.49
909 1057 3.373130 TCGTAGTAGAACACGACATCTGG 59.627 47.826 0.00 0.00 41.89 3.86
915 1063 1.549170 GAACACGACATCTGGGGTACT 59.451 52.381 0.00 0.00 0.00 2.73
919 1067 1.975680 ACGACATCTGGGGTACTTTGT 59.024 47.619 0.00 0.00 0.00 2.83
973 1130 3.215568 CCCTGTGCGGCACAAACA 61.216 61.111 32.71 13.44 44.08 2.83
974 1131 2.780094 CCCTGTGCGGCACAAACAA 61.780 57.895 32.71 13.02 44.08 2.83
975 1132 1.363443 CCTGTGCGGCACAAACAAT 59.637 52.632 32.71 0.00 44.08 2.71
976 1133 0.664166 CCTGTGCGGCACAAACAATC 60.664 55.000 32.71 6.64 44.08 2.67
1011 1168 2.111878 GGCATCATGGGAGGGTCG 59.888 66.667 0.00 0.00 0.00 4.79
1025 1182 2.739132 GTCGAAGTTGGGGGTCGT 59.261 61.111 0.00 0.00 36.21 4.34
1042 1199 4.147449 TGGCCTCGCGACATCTGG 62.147 66.667 3.71 5.71 0.00 3.86
1065 1222 0.727398 GGGTTTGGCGAGAAATCGAG 59.273 55.000 1.17 0.00 34.64 4.04
1127 1284 3.643763 CAGCGTGGAGATACTACCAATC 58.356 50.000 0.00 0.00 37.94 2.67
1129 1286 2.628657 GCGTGGAGATACTACCAATCCT 59.371 50.000 0.00 0.00 37.94 3.24
1219 1379 0.317160 ACGCGACAAGGAGATTGACA 59.683 50.000 15.93 0.00 41.83 3.58
1620 1786 3.775316 CCCTCAAAGAGTACCACAGGTAT 59.225 47.826 0.00 0.00 40.54 2.73
1627 1793 5.793030 AGAGTACCACAGGTATATTCAGC 57.207 43.478 0.00 0.00 40.54 4.26
1825 1995 5.288952 GGTACGTGCAGAATTTTACTCTCTC 59.711 44.000 5.86 0.00 0.00 3.20
1837 2007 8.697507 AATTTTACTCTCTCTTGTTTGGTCAT 57.302 30.769 0.00 0.00 0.00 3.06
1858 2982 1.621107 CCTGCGATGTTTGCATTGAC 58.379 50.000 0.00 0.00 42.32 3.18
1893 3031 9.151471 ACGAGTGGCAAATATGTATATTATGTC 57.849 33.333 0.00 2.52 32.91 3.06
1894 3032 8.604035 CGAGTGGCAAATATGTATATTATGTCC 58.396 37.037 0.00 5.87 32.91 4.02
1895 3033 8.807948 AGTGGCAAATATGTATATTATGTCCC 57.192 34.615 0.00 0.00 32.91 4.46
1922 3060 7.405292 TGGAGAAAGTTGATGGATTCTATTGT 58.595 34.615 0.00 0.00 32.54 2.71
1923 3061 7.554118 TGGAGAAAGTTGATGGATTCTATTGTC 59.446 37.037 0.00 0.00 32.54 3.18
1932 3077 7.147976 TGATGGATTCTATTGTCGTCTGTATG 58.852 38.462 0.00 0.00 0.00 2.39
1933 3078 6.465439 TGGATTCTATTGTCGTCTGTATGT 57.535 37.500 0.00 0.00 0.00 2.29
1934 3079 7.576861 TGGATTCTATTGTCGTCTGTATGTA 57.423 36.000 0.00 0.00 0.00 2.29
1935 3080 8.178313 TGGATTCTATTGTCGTCTGTATGTAT 57.822 34.615 0.00 0.00 0.00 2.29
1936 3081 8.297426 TGGATTCTATTGTCGTCTGTATGTATC 58.703 37.037 0.00 0.00 0.00 2.24
1948 3093 4.941873 TCTGTATGTATCGTAGATCGCCAT 59.058 41.667 0.00 0.00 45.12 4.40
1994 3139 2.280389 ATGAGGCATGCGCTACCG 60.280 61.111 12.44 0.00 38.60 4.02
2013 3158 2.845019 CAAGGATGCTGCTCGACAA 58.155 52.632 0.00 0.00 0.00 3.18
2029 3174 2.719046 CGACAACGAAAATGAAGCAACC 59.281 45.455 0.00 0.00 42.66 3.77
2030 3175 2.719046 GACAACGAAAATGAAGCAACCG 59.281 45.455 0.00 0.00 0.00 4.44
2031 3176 2.050691 CAACGAAAATGAAGCAACCGG 58.949 47.619 0.00 0.00 0.00 5.28
2115 3266 4.644234 TGCAGTGAAGAAAGGAATTGTTGA 59.356 37.500 0.00 0.00 0.00 3.18
2207 3369 8.136800 GTGCATGTCATGTTCCAATGATATTTA 58.863 33.333 14.26 0.00 36.56 1.40
2584 3752 2.294074 AGGTTTGTACATTGTGTGCGT 58.706 42.857 0.00 0.00 35.67 5.24
2585 3757 2.032799 AGGTTTGTACATTGTGTGCGTG 59.967 45.455 0.00 0.00 35.67 5.34
2853 4046 6.367422 CCAGACAGTAGATTTCAAGAACACTC 59.633 42.308 0.00 0.00 0.00 3.51
2942 4135 3.441922 TGCAAGAAACACACAAGCTTGTA 59.558 39.130 30.67 8.92 39.91 2.41
3006 4216 2.418197 GCAGTAGCCTCGGTGTTGATTA 60.418 50.000 0.00 0.00 33.58 1.75
3007 4217 3.857052 CAGTAGCCTCGGTGTTGATTAA 58.143 45.455 0.00 0.00 0.00 1.40
3279 4525 8.402472 CACAATCTTTGGTAACTAACTGTTCAA 58.598 33.333 0.00 0.00 36.14 2.69
3379 4625 4.202398 TGAGATGCTTGTCAAAGGAGAAGT 60.202 41.667 0.00 0.00 44.13 3.01
3411 4657 2.684374 TCAACAATCTCCATTGATGCCG 59.316 45.455 1.73 0.00 41.97 5.69
3468 4714 3.049080 AAGGCGGCAGATCCTTCCC 62.049 63.158 13.08 0.00 38.21 3.97
3520 4766 2.031465 TTGCCCCGACGAGGAAAC 59.969 61.111 0.00 0.00 45.00 2.78
3548 4794 2.698803 TCGGTCATGGTCACTTCATTG 58.301 47.619 0.00 0.00 0.00 2.82
3578 4824 3.628487 GTCTTGGATAGTGAGTAGCGACT 59.372 47.826 0.00 0.00 39.20 4.18
3619 4865 5.769662 TGGATGCTGAAACTGTTTCTGTTAT 59.230 36.000 28.83 24.33 40.32 1.89
3620 4866 6.939730 TGGATGCTGAAACTGTTTCTGTTATA 59.060 34.615 28.83 18.57 40.32 0.98
3621 4867 7.611467 TGGATGCTGAAACTGTTTCTGTTATAT 59.389 33.333 28.83 21.03 40.32 0.86
3622 4868 8.462016 GGATGCTGAAACTGTTTCTGTTATATT 58.538 33.333 28.83 14.90 40.32 1.28
3637 4883 2.422939 ATATTAGGAGAGGCCCTGCA 57.577 50.000 13.69 0.00 37.10 4.41
3639 4885 2.422939 ATTAGGAGAGGCCCTGCATA 57.577 50.000 13.69 3.33 37.10 3.14
3645 4891 0.995024 AGAGGCCCTGCATAGTTGTT 59.005 50.000 0.00 0.00 0.00 2.83
3647 4893 2.171003 GAGGCCCTGCATAGTTGTTTT 58.829 47.619 0.00 0.00 0.00 2.43
3649 4895 2.299867 AGGCCCTGCATAGTTGTTTTTG 59.700 45.455 0.00 0.00 0.00 2.44
3650 4896 2.298729 GGCCCTGCATAGTTGTTTTTGA 59.701 45.455 0.00 0.00 0.00 2.69
3651 4897 3.317150 GCCCTGCATAGTTGTTTTTGAC 58.683 45.455 0.00 0.00 0.00 3.18
3652 4898 3.860754 GCCCTGCATAGTTGTTTTTGACC 60.861 47.826 0.00 0.00 0.00 4.02
3653 4899 3.320541 CCCTGCATAGTTGTTTTTGACCA 59.679 43.478 0.00 0.00 0.00 4.02
3799 5055 4.819630 AGCGTCTCAAATTTTCTTGGTACA 59.180 37.500 0.00 0.00 0.00 2.90
3802 5058 6.668323 CGTCTCAAATTTTCTTGGTACATGT 58.332 36.000 2.69 2.69 39.30 3.21
3848 5104 3.676324 CGGAGGAGCCTAGTGTACAAAAG 60.676 52.174 0.00 0.00 0.00 2.27
3850 5106 4.020485 GGAGGAGCCTAGTGTACAAAAGAA 60.020 45.833 0.00 0.00 0.00 2.52
3887 5143 6.538263 AGGAAAACTCAGAGCAACTTTAGAT 58.462 36.000 0.00 0.00 0.00 1.98
3894 5150 8.273780 ACTCAGAGCAACTTTAGATATTTTGG 57.726 34.615 0.00 0.00 0.00 3.28
3935 5191 9.627123 TTTATTTATTGACATAACTCCTCCTGG 57.373 33.333 0.00 0.00 0.00 4.45
3945 5201 2.410039 TCCTCCTGGAGCACCTAGA 58.590 57.895 18.51 6.11 37.46 2.43
3946 5202 0.710588 TCCTCCTGGAGCACCTAGAA 59.289 55.000 18.51 0.00 37.46 2.10
3947 5203 1.078823 TCCTCCTGGAGCACCTAGAAA 59.921 52.381 18.51 0.00 37.46 2.52
3948 5204 1.909302 CCTCCTGGAGCACCTAGAAAA 59.091 52.381 18.51 0.00 37.04 2.29
3949 5205 2.507471 CCTCCTGGAGCACCTAGAAAAT 59.493 50.000 18.51 0.00 37.04 1.82
3950 5206 3.054065 CCTCCTGGAGCACCTAGAAAATT 60.054 47.826 18.51 0.00 37.04 1.82
3951 5207 4.568592 CCTCCTGGAGCACCTAGAAAATTT 60.569 45.833 18.51 0.00 37.04 1.82
3952 5208 4.589908 TCCTGGAGCACCTAGAAAATTTC 58.410 43.478 0.71 0.00 37.04 2.17
3953 5209 4.042809 TCCTGGAGCACCTAGAAAATTTCA 59.957 41.667 8.55 0.00 37.04 2.69
3954 5210 4.397417 CCTGGAGCACCTAGAAAATTTCAG 59.603 45.833 8.55 3.79 37.04 3.02
3955 5211 3.758554 TGGAGCACCTAGAAAATTTCAGC 59.241 43.478 8.55 4.19 37.04 4.26
3956 5212 3.758554 GGAGCACCTAGAAAATTTCAGCA 59.241 43.478 8.55 0.00 0.00 4.41
3957 5213 4.400567 GGAGCACCTAGAAAATTTCAGCAT 59.599 41.667 8.55 0.00 0.00 3.79
3958 5214 5.449725 GGAGCACCTAGAAAATTTCAGCATC 60.450 44.000 8.55 4.26 0.00 3.91
3959 5215 4.095483 AGCACCTAGAAAATTTCAGCATCG 59.905 41.667 8.55 0.00 0.00 3.84
3960 5216 4.142600 GCACCTAGAAAATTTCAGCATCGT 60.143 41.667 8.55 0.00 0.00 3.73
3961 5217 5.563842 CACCTAGAAAATTTCAGCATCGTC 58.436 41.667 8.55 0.00 0.00 4.20
3962 5218 4.330074 ACCTAGAAAATTTCAGCATCGTCG 59.670 41.667 8.55 0.00 0.00 5.12
3963 5219 4.330074 CCTAGAAAATTTCAGCATCGTCGT 59.670 41.667 8.55 0.00 0.00 4.34
3964 5220 4.070581 AGAAAATTTCAGCATCGTCGTG 57.929 40.909 8.55 0.00 0.00 4.35
3965 5221 3.498397 AGAAAATTTCAGCATCGTCGTGT 59.502 39.130 8.55 0.00 0.00 4.49
3966 5222 3.455619 AAATTTCAGCATCGTCGTGTC 57.544 42.857 0.00 0.00 0.00 3.67
3967 5223 2.078849 ATTTCAGCATCGTCGTGTCA 57.921 45.000 0.00 0.00 0.00 3.58
3968 5224 1.859383 TTTCAGCATCGTCGTGTCAA 58.141 45.000 0.00 0.00 0.00 3.18
3969 5225 1.859383 TTCAGCATCGTCGTGTCAAA 58.141 45.000 0.00 0.00 0.00 2.69
3970 5226 1.859383 TCAGCATCGTCGTGTCAAAA 58.141 45.000 0.00 0.00 0.00 2.44
3971 5227 2.205911 TCAGCATCGTCGTGTCAAAAA 58.794 42.857 0.00 0.00 0.00 1.94
4016 5272 8.751302 TTTCTTTTTCAAGTTAACTGTTCACC 57.249 30.769 9.34 0.00 0.00 4.02
4019 5275 2.841215 TCAAGTTAACTGTTCACCGGG 58.159 47.619 9.34 0.00 0.00 5.73
4021 5277 0.250597 AGTTAACTGTTCACCGGGGC 60.251 55.000 7.48 0.00 0.00 5.80
4053 5309 2.353803 GGGCTCCGCTATGAATTATCGT 60.354 50.000 0.00 0.00 0.00 3.73
4077 5333 4.720046 TGGCTGACCATAACAAACTTACA 58.280 39.130 0.00 0.00 42.67 2.41
4081 5337 6.371389 GCTGACCATAACAAACTTACACTTC 58.629 40.000 0.00 0.00 0.00 3.01
4096 5352 6.206829 ACTTACACTTCAGCAATAAAACTCCC 59.793 38.462 0.00 0.00 0.00 4.30
4104 5360 5.009610 TCAGCAATAAAACTCCCAAGTTCAC 59.990 40.000 0.00 0.00 45.07 3.18
4105 5361 4.023193 AGCAATAAAACTCCCAAGTTCACG 60.023 41.667 0.00 0.00 45.07 4.35
4107 5363 1.029681 AAAACTCCCAAGTTCACGGC 58.970 50.000 0.00 0.00 45.07 5.68
4108 5364 0.106918 AAACTCCCAAGTTCACGGCA 60.107 50.000 0.00 0.00 45.07 5.69
4136 5395 1.933853 GGGTGATGCTACATCAACGAC 59.066 52.381 16.97 3.45 36.64 4.34
4162 5421 3.678056 TCTTTCAGATGGCACTTACGT 57.322 42.857 0.00 0.00 0.00 3.57
4186 5445 7.166638 CGTGCTAACAGTGAATTCAGTCTATAG 59.833 40.741 13.00 14.73 0.00 1.31
4217 5515 7.591006 TCCAGTATTATTTATCGCCGAATTC 57.409 36.000 0.00 0.00 0.00 2.17
4300 5804 6.497437 TGATGCATATGTGTCATTTAACTGC 58.503 36.000 0.00 0.00 0.00 4.40
4339 5902 5.869753 AGTCGATGAAGCCAAATATATGC 57.130 39.130 0.00 0.00 0.00 3.14
4358 5924 1.876156 GCAGCCTGGATTACTACATGC 59.124 52.381 0.00 0.00 0.00 4.06
4372 5938 0.036164 ACATGCTGCCGGTCTTGTAA 59.964 50.000 1.90 0.00 0.00 2.41
4380 5946 1.201414 GCCGGTCTTGTAAATGTTGGG 59.799 52.381 1.90 0.00 0.00 4.12
4417 5983 5.933617 AGTGAACCTACATGCATATGTGAT 58.066 37.500 0.00 0.00 46.63 3.06
4418 5984 6.359804 AGTGAACCTACATGCATATGTGATT 58.640 36.000 0.00 0.00 46.63 2.57
4420 5986 5.764686 TGAACCTACATGCATATGTGATTCC 59.235 40.000 0.00 0.00 46.63 3.01
4422 5988 5.693961 ACCTACATGCATATGTGATTCCAA 58.306 37.500 0.00 0.00 46.63 3.53
4423 5989 5.766670 ACCTACATGCATATGTGATTCCAAG 59.233 40.000 0.00 0.00 46.63 3.61
4424 5990 4.579454 ACATGCATATGTGATTCCAAGC 57.421 40.909 0.00 0.00 45.54 4.01
4429 5995 5.192176 TGCATATGTGATTCCAAGCTAACA 58.808 37.500 4.29 0.00 0.00 2.41
4430 5996 5.066375 TGCATATGTGATTCCAAGCTAACAC 59.934 40.000 4.29 0.00 0.00 3.32
4431 5997 5.741425 CATATGTGATTCCAAGCTAACACG 58.259 41.667 0.00 0.00 0.00 4.49
4473 6042 4.589675 GGGTTGCCCGGTTGGTGA 62.590 66.667 0.00 0.00 32.13 4.02
4538 6107 3.118542 GTGACCAAGAAGCAAGCAAAAG 58.881 45.455 0.00 0.00 0.00 2.27
4539 6108 3.023119 TGACCAAGAAGCAAGCAAAAGA 58.977 40.909 0.00 0.00 0.00 2.52
4540 6109 3.067180 TGACCAAGAAGCAAGCAAAAGAG 59.933 43.478 0.00 0.00 0.00 2.85
4541 6110 2.363359 ACCAAGAAGCAAGCAAAAGAGG 59.637 45.455 0.00 0.00 0.00 3.69
4542 6111 2.401351 CAAGAAGCAAGCAAAAGAGGC 58.599 47.619 0.00 0.00 0.00 4.70
4543 6112 0.964700 AGAAGCAAGCAAAAGAGGCC 59.035 50.000 0.00 0.00 0.00 5.19
4544 6113 0.964700 GAAGCAAGCAAAAGAGGCCT 59.035 50.000 3.86 3.86 0.00 5.19
4545 6114 0.964700 AAGCAAGCAAAAGAGGCCTC 59.035 50.000 26.22 26.22 0.00 4.70
4546 6115 0.897401 AGCAAGCAAAAGAGGCCTCC 60.897 55.000 29.54 13.50 0.00 4.30
4547 6116 1.181098 GCAAGCAAAAGAGGCCTCCA 61.181 55.000 29.54 0.00 0.00 3.86
4548 6117 1.331214 CAAGCAAAAGAGGCCTCCAA 58.669 50.000 29.54 0.00 0.00 3.53
4549 6118 1.271656 CAAGCAAAAGAGGCCTCCAAG 59.728 52.381 29.54 17.28 0.00 3.61
4550 6119 0.897401 AGCAAAAGAGGCCTCCAAGC 60.897 55.000 29.54 25.35 0.00 4.01
4551 6120 1.181098 GCAAAAGAGGCCTCCAAGCA 61.181 55.000 29.54 0.00 0.00 3.91
4552 6121 1.331214 CAAAAGAGGCCTCCAAGCAA 58.669 50.000 29.54 0.00 0.00 3.91
4553 6122 1.688197 CAAAAGAGGCCTCCAAGCAAA 59.312 47.619 29.54 0.00 0.00 3.68
4554 6123 2.086610 AAAGAGGCCTCCAAGCAAAA 57.913 45.000 29.54 0.00 0.00 2.44
4555 6124 1.332195 AAGAGGCCTCCAAGCAAAAC 58.668 50.000 29.54 0.17 0.00 2.43
4556 6125 0.185901 AGAGGCCTCCAAGCAAAACA 59.814 50.000 29.54 0.00 0.00 2.83
4557 6126 1.039856 GAGGCCTCCAAGCAAAACAA 58.960 50.000 23.19 0.00 0.00 2.83
4558 6127 1.620323 GAGGCCTCCAAGCAAAACAAT 59.380 47.619 23.19 0.00 0.00 2.71
4559 6128 2.037641 GAGGCCTCCAAGCAAAACAATT 59.962 45.455 23.19 0.00 0.00 2.32
4560 6129 3.238597 AGGCCTCCAAGCAAAACAATTA 58.761 40.909 0.00 0.00 0.00 1.40
4561 6130 3.259123 AGGCCTCCAAGCAAAACAATTAG 59.741 43.478 0.00 0.00 0.00 1.73
4562 6131 3.006859 GGCCTCCAAGCAAAACAATTAGT 59.993 43.478 0.00 0.00 0.00 2.24
4563 6132 4.219725 GGCCTCCAAGCAAAACAATTAGTA 59.780 41.667 0.00 0.00 0.00 1.82
4564 6133 5.161358 GCCTCCAAGCAAAACAATTAGTAC 58.839 41.667 0.00 0.00 0.00 2.73
4565 6134 5.048013 GCCTCCAAGCAAAACAATTAGTACT 60.048 40.000 0.00 0.00 0.00 2.73
4566 6135 6.381801 CCTCCAAGCAAAACAATTAGTACTG 58.618 40.000 5.39 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.426522 CCTTGAGTCGCTCATCCAAAA 58.573 47.619 9.78 0.00 40.39 2.44
5 6 1.945819 GCCTTGAGTCGCTCATCCAAA 60.946 52.381 9.78 0.00 40.39 3.28
6 7 0.391661 GCCTTGAGTCGCTCATCCAA 60.392 55.000 9.78 0.00 40.39 3.53
7 8 1.219124 GCCTTGAGTCGCTCATCCA 59.781 57.895 9.78 0.00 40.39 3.41
8 9 1.880340 CGCCTTGAGTCGCTCATCC 60.880 63.158 9.78 2.61 40.39 3.51
9 10 0.737715 AACGCCTTGAGTCGCTCATC 60.738 55.000 9.78 3.50 40.39 2.92
10 11 0.320771 AAACGCCTTGAGTCGCTCAT 60.321 50.000 9.78 0.00 40.39 2.90
11 12 0.531974 AAAACGCCTTGAGTCGCTCA 60.532 50.000 5.59 5.59 38.87 4.26
12 13 1.425412 TAAAACGCCTTGAGTCGCTC 58.575 50.000 0.58 0.58 0.00 5.03
13 14 1.873698 TTAAAACGCCTTGAGTCGCT 58.126 45.000 0.00 0.00 0.00 4.93
14 15 2.673976 TTTAAAACGCCTTGAGTCGC 57.326 45.000 0.00 0.00 0.00 5.19
35 36 8.879759 CCGCACGAATATTATCTATTAATGGTT 58.120 33.333 0.00 0.00 32.66 3.67
36 37 7.494625 CCCGCACGAATATTATCTATTAATGGT 59.505 37.037 0.00 0.00 32.66 3.55
37 38 7.494625 ACCCGCACGAATATTATCTATTAATGG 59.505 37.037 0.00 0.00 32.66 3.16
38 39 8.328146 CACCCGCACGAATATTATCTATTAATG 58.672 37.037 0.00 0.00 32.66 1.90
39 40 8.255206 TCACCCGCACGAATATTATCTATTAAT 58.745 33.333 0.00 0.00 34.80 1.40
40 41 7.604549 TCACCCGCACGAATATTATCTATTAA 58.395 34.615 0.00 0.00 0.00 1.40
41 42 7.160547 TCACCCGCACGAATATTATCTATTA 57.839 36.000 0.00 0.00 0.00 0.98
42 43 6.032956 TCACCCGCACGAATATTATCTATT 57.967 37.500 0.00 0.00 0.00 1.73
43 44 5.654603 TCACCCGCACGAATATTATCTAT 57.345 39.130 0.00 0.00 0.00 1.98
44 45 5.456548 TTCACCCGCACGAATATTATCTA 57.543 39.130 0.00 0.00 0.00 1.98
45 46 4.330944 TTCACCCGCACGAATATTATCT 57.669 40.909 0.00 0.00 0.00 1.98
46 47 4.748102 TCTTTCACCCGCACGAATATTATC 59.252 41.667 0.00 0.00 0.00 1.75
47 48 4.699637 TCTTTCACCCGCACGAATATTAT 58.300 39.130 0.00 0.00 0.00 1.28
48 49 4.116961 CTCTTTCACCCGCACGAATATTA 58.883 43.478 0.00 0.00 0.00 0.98
49 50 2.936498 CTCTTTCACCCGCACGAATATT 59.064 45.455 0.00 0.00 0.00 1.28
50 51 2.093658 ACTCTTTCACCCGCACGAATAT 60.094 45.455 0.00 0.00 0.00 1.28
51 52 1.274167 ACTCTTTCACCCGCACGAATA 59.726 47.619 0.00 0.00 0.00 1.75
52 53 0.034896 ACTCTTTCACCCGCACGAAT 59.965 50.000 0.00 0.00 0.00 3.34
53 54 0.878523 CACTCTTTCACCCGCACGAA 60.879 55.000 0.00 0.00 0.00 3.85
54 55 1.300620 CACTCTTTCACCCGCACGA 60.301 57.895 0.00 0.00 0.00 4.35
55 56 1.300620 TCACTCTTTCACCCGCACG 60.301 57.895 0.00 0.00 0.00 5.34
56 57 0.531974 TGTCACTCTTTCACCCGCAC 60.532 55.000 0.00 0.00 0.00 5.34
57 58 0.179234 TTGTCACTCTTTCACCCGCA 59.821 50.000 0.00 0.00 0.00 5.69
58 59 0.586802 GTTGTCACTCTTTCACCCGC 59.413 55.000 0.00 0.00 0.00 6.13
59 60 1.597663 GTGTTGTCACTCTTTCACCCG 59.402 52.381 0.00 0.00 40.98 5.28
60 61 1.947456 GGTGTTGTCACTCTTTCACCC 59.053 52.381 0.00 0.00 43.41 4.61
61 62 1.597663 CGGTGTTGTCACTCTTTCACC 59.402 52.381 0.00 0.00 43.41 4.02
62 63 2.277084 ACGGTGTTGTCACTCTTTCAC 58.723 47.619 0.00 0.00 43.41 3.18
63 64 2.684001 ACGGTGTTGTCACTCTTTCA 57.316 45.000 0.00 0.00 43.41 2.69
64 65 4.117685 ACTAACGGTGTTGTCACTCTTTC 58.882 43.478 0.00 0.00 43.41 2.62
65 66 4.117685 GACTAACGGTGTTGTCACTCTTT 58.882 43.478 0.00 0.00 43.41 2.52
66 67 3.492137 GGACTAACGGTGTTGTCACTCTT 60.492 47.826 9.49 0.00 43.41 2.85
67 68 2.035576 GGACTAACGGTGTTGTCACTCT 59.964 50.000 9.49 0.00 43.41 3.24
68 69 2.223876 TGGACTAACGGTGTTGTCACTC 60.224 50.000 9.49 0.00 43.41 3.51
69 70 1.758280 TGGACTAACGGTGTTGTCACT 59.242 47.619 9.49 0.00 43.41 3.41
70 71 2.228138 TGGACTAACGGTGTTGTCAC 57.772 50.000 9.49 0.00 43.19 3.67
71 72 2.983907 TTGGACTAACGGTGTTGTCA 57.016 45.000 9.49 0.00 0.00 3.58
72 73 2.410730 CGATTGGACTAACGGTGTTGTC 59.589 50.000 0.00 0.00 0.00 3.18
73 74 2.409975 CGATTGGACTAACGGTGTTGT 58.590 47.619 0.00 0.00 0.00 3.32
74 75 1.127951 GCGATTGGACTAACGGTGTTG 59.872 52.381 0.00 0.00 0.00 3.33
75 76 1.270412 TGCGATTGGACTAACGGTGTT 60.270 47.619 0.00 0.00 0.00 3.32
76 77 0.319083 TGCGATTGGACTAACGGTGT 59.681 50.000 0.00 0.00 0.00 4.16
77 78 0.999406 CTGCGATTGGACTAACGGTG 59.001 55.000 0.00 0.00 0.00 4.94
78 79 0.892755 TCTGCGATTGGACTAACGGT 59.107 50.000 0.00 0.00 0.00 4.83
79 80 1.134367 TCTCTGCGATTGGACTAACGG 59.866 52.381 0.00 0.00 0.00 4.44
80 81 2.561733 TCTCTGCGATTGGACTAACG 57.438 50.000 0.00 0.00 0.00 3.18
89 90 4.944619 TCAGGTATCAATCTCTGCGATT 57.055 40.909 0.00 0.00 43.03 3.34
90 91 4.586421 TCTTCAGGTATCAATCTCTGCGAT 59.414 41.667 0.00 0.00 0.00 4.58
91 92 3.954258 TCTTCAGGTATCAATCTCTGCGA 59.046 43.478 0.00 0.00 0.00 5.10
92 93 4.313277 TCTTCAGGTATCAATCTCTGCG 57.687 45.455 0.00 0.00 0.00 5.18
93 94 5.055812 CCTTCTTCAGGTATCAATCTCTGC 58.944 45.833 0.00 0.00 37.99 4.26
105 106 7.288621 AATTTTCTGAAATCACCTTCTTCAGGT 59.711 33.333 3.31 0.00 44.81 4.00
106 107 7.224522 ATTTTCTGAAATCACCTTCTTCAGG 57.775 36.000 3.31 0.00 44.04 3.86
107 108 9.189723 GAAATTTTCTGAAATCACCTTCTTCAG 57.810 33.333 3.31 4.96 44.85 3.02
108 109 7.862372 CGAAATTTTCTGAAATCACCTTCTTCA 59.138 33.333 3.31 0.00 34.44 3.02
109 110 7.862873 ACGAAATTTTCTGAAATCACCTTCTTC 59.137 33.333 3.31 0.00 34.44 2.87
110 111 7.716612 ACGAAATTTTCTGAAATCACCTTCTT 58.283 30.769 3.31 0.00 34.44 2.52
111 112 7.277174 ACGAAATTTTCTGAAATCACCTTCT 57.723 32.000 3.31 0.00 34.44 2.85
112 113 7.930513 AACGAAATTTTCTGAAATCACCTTC 57.069 32.000 3.31 2.86 34.44 3.46
169 170 8.359642 CACTGATTTGAACCTAAGATCCAAAAA 58.640 33.333 0.00 0.00 31.63 1.94
170 171 7.505585 ACACTGATTTGAACCTAAGATCCAAAA 59.494 33.333 0.00 0.00 31.63 2.44
171 172 7.004086 ACACTGATTTGAACCTAAGATCCAAA 58.996 34.615 0.00 0.00 0.00 3.28
172 173 6.542821 ACACTGATTTGAACCTAAGATCCAA 58.457 36.000 0.00 0.00 0.00 3.53
173 174 6.126863 ACACTGATTTGAACCTAAGATCCA 57.873 37.500 0.00 0.00 0.00 3.41
174 175 8.207545 AGATACACTGATTTGAACCTAAGATCC 58.792 37.037 0.00 0.00 0.00 3.36
191 192 9.809096 ATACTCATAACAACTTCAGATACACTG 57.191 33.333 0.00 0.00 46.97 3.66
192 193 9.809096 CATACTCATAACAACTTCAGATACACT 57.191 33.333 0.00 0.00 0.00 3.55
193 194 9.803315 TCATACTCATAACAACTTCAGATACAC 57.197 33.333 0.00 0.00 0.00 2.90
248 249 7.772332 ACGCTAATTCTTAGTCCACAATTAG 57.228 36.000 0.00 0.00 39.95 1.73
249 250 9.090692 GTTACGCTAATTCTTAGTCCACAATTA 57.909 33.333 0.00 0.00 35.66 1.40
250 251 7.065443 GGTTACGCTAATTCTTAGTCCACAATT 59.935 37.037 0.00 0.00 35.66 2.32
251 252 6.537660 GGTTACGCTAATTCTTAGTCCACAAT 59.462 38.462 0.00 0.00 35.66 2.71
252 253 5.870978 GGTTACGCTAATTCTTAGTCCACAA 59.129 40.000 0.00 0.00 35.66 3.33
253 254 5.413499 GGTTACGCTAATTCTTAGTCCACA 58.587 41.667 0.00 0.00 35.66 4.17
254 255 4.501921 CGGTTACGCTAATTCTTAGTCCAC 59.498 45.833 0.00 0.00 35.66 4.02
255 256 4.398988 TCGGTTACGCTAATTCTTAGTCCA 59.601 41.667 0.00 0.00 40.69 4.02
256 257 4.925068 TCGGTTACGCTAATTCTTAGTCC 58.075 43.478 0.00 0.00 40.69 3.85
257 258 6.875926 TTTCGGTTACGCTAATTCTTAGTC 57.124 37.500 0.00 0.00 40.69 2.59
258 259 7.622880 GCTTTTTCGGTTACGCTAATTCTTAGT 60.623 37.037 0.00 0.00 40.69 2.24
259 260 6.681599 GCTTTTTCGGTTACGCTAATTCTTAG 59.318 38.462 0.00 0.00 40.69 2.18
260 261 6.147492 TGCTTTTTCGGTTACGCTAATTCTTA 59.853 34.615 0.00 0.00 40.69 2.10
261 262 5.049267 TGCTTTTTCGGTTACGCTAATTCTT 60.049 36.000 0.00 0.00 40.69 2.52
262 263 4.453136 TGCTTTTTCGGTTACGCTAATTCT 59.547 37.500 0.00 0.00 40.69 2.40
263 264 4.714851 TGCTTTTTCGGTTACGCTAATTC 58.285 39.130 0.00 0.00 40.69 2.17
264 265 4.752661 TGCTTTTTCGGTTACGCTAATT 57.247 36.364 0.00 0.00 40.69 1.40
265 266 4.214758 ACTTGCTTTTTCGGTTACGCTAAT 59.785 37.500 0.00 0.00 40.69 1.73
266 267 3.560896 ACTTGCTTTTTCGGTTACGCTAA 59.439 39.130 0.00 0.00 40.69 3.09
267 268 3.132925 ACTTGCTTTTTCGGTTACGCTA 58.867 40.909 0.00 0.00 40.69 4.26
268 269 1.944709 ACTTGCTTTTTCGGTTACGCT 59.055 42.857 0.00 0.00 40.69 5.07
269 270 2.394545 ACTTGCTTTTTCGGTTACGC 57.605 45.000 0.00 0.00 40.69 4.42
270 271 3.966218 CAGAACTTGCTTTTTCGGTTACG 59.034 43.478 0.00 0.00 42.74 3.18
271 272 5.164606 TCAGAACTTGCTTTTTCGGTTAC 57.835 39.130 0.00 0.00 0.00 2.50
272 273 7.681939 ATATCAGAACTTGCTTTTTCGGTTA 57.318 32.000 0.00 0.00 0.00 2.85
273 274 4.918810 ATCAGAACTTGCTTTTTCGGTT 57.081 36.364 0.00 0.00 0.00 4.44
274 275 6.575162 AATATCAGAACTTGCTTTTTCGGT 57.425 33.333 0.00 0.00 0.00 4.69
275 276 6.863126 ACAAATATCAGAACTTGCTTTTTCGG 59.137 34.615 0.00 0.00 0.00 4.30
276 277 7.858052 ACAAATATCAGAACTTGCTTTTTCG 57.142 32.000 0.00 0.00 0.00 3.46
310 311 9.640974 CGCATCATCAAAAATTCAAATAAATCC 57.359 29.630 0.00 0.00 0.00 3.01
324 325 9.906660 ACTTCTATTAAAAACGCATCATCAAAA 57.093 25.926 0.00 0.00 0.00 2.44
327 328 9.594478 TCTACTTCTATTAAAAACGCATCATCA 57.406 29.630 0.00 0.00 0.00 3.07
328 329 9.851043 GTCTACTTCTATTAAAAACGCATCATC 57.149 33.333 0.00 0.00 0.00 2.92
329 330 8.540492 CGTCTACTTCTATTAAAAACGCATCAT 58.460 33.333 0.00 0.00 0.00 2.45
330 331 7.543172 ACGTCTACTTCTATTAAAAACGCATCA 59.457 33.333 0.00 0.00 0.00 3.07
331 332 7.892803 ACGTCTACTTCTATTAAAAACGCATC 58.107 34.615 0.00 0.00 0.00 3.91
332 333 7.823149 ACGTCTACTTCTATTAAAAACGCAT 57.177 32.000 0.00 0.00 0.00 4.73
333 334 7.381948 TGAACGTCTACTTCTATTAAAAACGCA 59.618 33.333 0.00 0.00 0.00 5.24
334 335 7.723270 TGAACGTCTACTTCTATTAAAAACGC 58.277 34.615 0.00 0.00 0.00 4.84
344 345 9.874215 CGTTATTGATATGAACGTCTACTTCTA 57.126 33.333 0.00 0.00 40.71 2.10
345 346 8.618677 TCGTTATTGATATGAACGTCTACTTCT 58.381 33.333 6.32 0.00 44.72 2.85
346 347 8.778141 TCGTTATTGATATGAACGTCTACTTC 57.222 34.615 6.32 0.00 44.72 3.01
347 348 7.861372 CCTCGTTATTGATATGAACGTCTACTT 59.139 37.037 6.32 0.00 44.72 2.24
348 349 7.013083 ACCTCGTTATTGATATGAACGTCTACT 59.987 37.037 6.32 0.00 44.72 2.57
349 350 7.113124 CACCTCGTTATTGATATGAACGTCTAC 59.887 40.741 6.32 0.00 44.72 2.59
350 351 7.136772 CACCTCGTTATTGATATGAACGTCTA 58.863 38.462 6.32 0.00 44.72 2.59
351 352 5.977725 CACCTCGTTATTGATATGAACGTCT 59.022 40.000 6.32 0.00 44.72 4.18
352 353 5.747197 ACACCTCGTTATTGATATGAACGTC 59.253 40.000 6.32 0.00 44.72 4.34
353 354 5.657474 ACACCTCGTTATTGATATGAACGT 58.343 37.500 6.32 0.00 44.72 3.99
354 355 5.977725 AGACACCTCGTTATTGATATGAACG 59.022 40.000 0.16 0.16 45.55 3.95
355 356 9.477484 AATAGACACCTCGTTATTGATATGAAC 57.523 33.333 0.00 0.00 0.00 3.18
361 362 8.861086 AGTCATAATAGACACCTCGTTATTGAT 58.139 33.333 0.00 0.00 40.98 2.57
362 363 8.234136 AGTCATAATAGACACCTCGTTATTGA 57.766 34.615 0.00 0.00 40.98 2.57
363 364 8.755941 CAAGTCATAATAGACACCTCGTTATTG 58.244 37.037 0.00 0.00 40.98 1.90
364 365 7.926555 CCAAGTCATAATAGACACCTCGTTATT 59.073 37.037 0.00 0.00 40.98 1.40
365 366 7.434492 CCAAGTCATAATAGACACCTCGTTAT 58.566 38.462 0.00 0.00 40.98 1.89
366 367 6.183360 CCCAAGTCATAATAGACACCTCGTTA 60.183 42.308 0.00 0.00 40.98 3.18
367 368 5.395324 CCCAAGTCATAATAGACACCTCGTT 60.395 44.000 0.00 0.00 40.98 3.85
368 369 4.099573 CCCAAGTCATAATAGACACCTCGT 59.900 45.833 0.00 0.00 40.98 4.18
369 370 4.621991 CCCAAGTCATAATAGACACCTCG 58.378 47.826 0.00 0.00 40.98 4.63
370 371 4.101741 AGCCCAAGTCATAATAGACACCTC 59.898 45.833 0.00 0.00 40.98 3.85
371 372 4.040755 AGCCCAAGTCATAATAGACACCT 58.959 43.478 0.00 0.00 40.98 4.00
372 373 4.423625 AGCCCAAGTCATAATAGACACC 57.576 45.455 0.00 0.00 40.98 4.16
373 374 6.525629 ACATAGCCCAAGTCATAATAGACAC 58.474 40.000 0.00 0.00 40.98 3.67
374 375 6.747414 ACATAGCCCAAGTCATAATAGACA 57.253 37.500 0.00 0.00 40.98 3.41
375 376 7.324178 CCTACATAGCCCAAGTCATAATAGAC 58.676 42.308 0.00 0.00 38.81 2.59
376 377 6.440647 CCCTACATAGCCCAAGTCATAATAGA 59.559 42.308 0.00 0.00 0.00 1.98
377 378 6.352222 CCCCTACATAGCCCAAGTCATAATAG 60.352 46.154 0.00 0.00 0.00 1.73
378 379 5.487488 CCCCTACATAGCCCAAGTCATAATA 59.513 44.000 0.00 0.00 0.00 0.98
379 380 4.289672 CCCCTACATAGCCCAAGTCATAAT 59.710 45.833 0.00 0.00 0.00 1.28
380 381 3.650942 CCCCTACATAGCCCAAGTCATAA 59.349 47.826 0.00 0.00 0.00 1.90
381 382 3.248024 CCCCTACATAGCCCAAGTCATA 58.752 50.000 0.00 0.00 0.00 2.15
382 383 2.057922 CCCCTACATAGCCCAAGTCAT 58.942 52.381 0.00 0.00 0.00 3.06
383 384 1.507140 CCCCTACATAGCCCAAGTCA 58.493 55.000 0.00 0.00 0.00 3.41
384 385 0.765510 CCCCCTACATAGCCCAAGTC 59.234 60.000 0.00 0.00 0.00 3.01
385 386 2.945718 CCCCCTACATAGCCCAAGT 58.054 57.895 0.00 0.00 0.00 3.16
408 409 4.389576 CTGTTTGTGCGCCCGAGC 62.390 66.667 4.18 0.00 37.71 5.03
409 410 4.389576 GCTGTTTGTGCGCCCGAG 62.390 66.667 4.18 0.00 0.00 4.63
411 412 4.688419 CTGCTGTTTGTGCGCCCG 62.688 66.667 4.18 0.00 0.00 6.13
415 416 1.915614 CTAGGGCTGCTGTTTGTGCG 61.916 60.000 0.00 0.00 0.00 5.34
416 417 0.606401 TCTAGGGCTGCTGTTTGTGC 60.606 55.000 0.00 0.00 0.00 4.57
417 418 1.160137 GTCTAGGGCTGCTGTTTGTG 58.840 55.000 0.00 0.00 0.00 3.33
418 419 1.059913 AGTCTAGGGCTGCTGTTTGT 58.940 50.000 0.00 0.00 0.00 2.83
419 420 1.808945 CAAGTCTAGGGCTGCTGTTTG 59.191 52.381 0.00 0.00 0.00 2.93
420 421 1.699634 TCAAGTCTAGGGCTGCTGTTT 59.300 47.619 0.00 0.00 0.00 2.83
421 422 1.002544 GTCAAGTCTAGGGCTGCTGTT 59.997 52.381 0.00 0.00 0.00 3.16
422 423 0.610687 GTCAAGTCTAGGGCTGCTGT 59.389 55.000 0.00 0.00 0.00 4.40
423 424 0.459237 CGTCAAGTCTAGGGCTGCTG 60.459 60.000 0.00 0.00 0.00 4.41
424 425 1.893786 CGTCAAGTCTAGGGCTGCT 59.106 57.895 0.00 0.00 0.00 4.24
425 426 1.811679 GCGTCAAGTCTAGGGCTGC 60.812 63.158 0.00 0.00 0.00 5.25
426 427 0.247736 AAGCGTCAAGTCTAGGGCTG 59.752 55.000 0.00 0.00 0.00 4.85
427 428 0.977395 AAAGCGTCAAGTCTAGGGCT 59.023 50.000 0.00 0.00 0.00 5.19
428 429 1.079503 CAAAGCGTCAAGTCTAGGGC 58.920 55.000 0.00 0.00 0.00 5.19
429 430 2.028930 AGTCAAAGCGTCAAGTCTAGGG 60.029 50.000 0.00 0.00 0.00 3.53
430 431 3.305398 AGTCAAAGCGTCAAGTCTAGG 57.695 47.619 0.00 0.00 0.00 3.02
431 432 5.090083 GTCTAGTCAAAGCGTCAAGTCTAG 58.910 45.833 0.00 0.00 0.00 2.43
432 433 4.082895 GGTCTAGTCAAAGCGTCAAGTCTA 60.083 45.833 0.00 0.00 0.00 2.59
433 434 3.305471 GGTCTAGTCAAAGCGTCAAGTCT 60.305 47.826 0.00 0.00 0.00 3.24
434 435 2.987821 GGTCTAGTCAAAGCGTCAAGTC 59.012 50.000 0.00 0.00 0.00 3.01
435 436 2.607282 CGGTCTAGTCAAAGCGTCAAGT 60.607 50.000 0.00 0.00 0.00 3.16
436 437 1.986378 CGGTCTAGTCAAAGCGTCAAG 59.014 52.381 0.00 0.00 0.00 3.02
437 438 1.336517 CCGGTCTAGTCAAAGCGTCAA 60.337 52.381 0.00 0.00 34.76 3.18
438 439 0.242825 CCGGTCTAGTCAAAGCGTCA 59.757 55.000 0.00 0.00 34.76 4.35
439 440 0.458025 CCCGGTCTAGTCAAAGCGTC 60.458 60.000 0.00 0.00 34.76 5.19
440 441 1.590147 CCCGGTCTAGTCAAAGCGT 59.410 57.895 0.00 0.00 34.76 5.07
441 442 1.810030 GCCCGGTCTAGTCAAAGCG 60.810 63.158 0.00 0.00 36.23 4.68
442 443 1.810030 CGCCCGGTCTAGTCAAAGC 60.810 63.158 0.00 0.00 0.00 3.51
443 444 0.736325 CACGCCCGGTCTAGTCAAAG 60.736 60.000 0.00 0.00 0.00 2.77
444 445 1.180456 TCACGCCCGGTCTAGTCAAA 61.180 55.000 0.00 0.00 0.00 2.69
445 446 1.604308 TCACGCCCGGTCTAGTCAA 60.604 57.895 0.00 0.00 0.00 3.18
446 447 2.034532 TCACGCCCGGTCTAGTCA 59.965 61.111 0.00 0.00 0.00 3.41
447 448 2.488820 GTCACGCCCGGTCTAGTC 59.511 66.667 0.00 0.00 0.00 2.59
448 449 3.066814 GGTCACGCCCGGTCTAGT 61.067 66.667 0.00 0.00 0.00 2.57
449 450 3.064987 CTGGTCACGCCCGGTCTAG 62.065 68.421 0.00 0.00 36.04 2.43
450 451 3.066190 CTGGTCACGCCCGGTCTA 61.066 66.667 0.00 0.00 36.04 2.59
451 452 4.988716 TCTGGTCACGCCCGGTCT 62.989 66.667 0.00 0.00 36.04 3.85
452 453 4.736896 GTCTGGTCACGCCCGGTC 62.737 72.222 0.00 0.00 36.04 4.79
459 460 4.742201 CAGCCCGGTCTGGTCACG 62.742 72.222 4.07 0.00 35.15 4.35
460 461 4.394712 CCAGCCCGGTCTGGTCAC 62.395 72.222 23.68 0.00 46.59 3.67
465 466 3.775654 GAGTCCCAGCCCGGTCTG 61.776 72.222 5.25 5.25 0.00 3.51
506 507 4.735132 TTCAAGTCTCCGCCGCCG 62.735 66.667 0.00 0.00 0.00 6.46
508 509 2.357034 TGTTCAAGTCTCCGCCGC 60.357 61.111 0.00 0.00 0.00 6.53
518 519 2.926200 CTGCATACTCGACCTGTTCAAG 59.074 50.000 0.00 0.00 0.00 3.02
542 543 4.838486 GCTGACTCCTCGCCGACG 62.838 72.222 0.00 0.00 42.01 5.12
600 678 3.200593 GCCTCGTCGCCTCTACGA 61.201 66.667 0.00 0.00 46.35 3.43
601 679 2.718993 GATGCCTCGTCGCCTCTACG 62.719 65.000 0.00 0.00 41.64 3.51
604 682 3.532155 GGATGCCTCGTCGCCTCT 61.532 66.667 0.00 0.00 0.00 3.69
783 919 3.426568 GTTGCTCCAGTGCTCGCC 61.427 66.667 0.00 0.00 0.00 5.54
827 963 0.597072 GTAGCCGTCTCGATTAGGGG 59.403 60.000 8.28 0.00 0.00 4.79
830 966 3.694535 AACTGTAGCCGTCTCGATTAG 57.305 47.619 0.00 0.00 0.00 1.73
874 1022 9.403110 GTGTTCTACTACGATTAGACTTTGAAA 57.597 33.333 0.00 0.00 0.00 2.69
889 1037 3.181489 CCCCAGATGTCGTGTTCTACTAC 60.181 52.174 0.00 0.00 0.00 2.73
901 1049 5.070685 AGAAAACAAAGTACCCCAGATGTC 58.929 41.667 0.00 0.00 0.00 3.06
934 1091 3.662186 GCAAAACGTTGGATTAGTTCGTG 59.338 43.478 0.00 0.00 35.10 4.35
1011 1168 2.671963 GCCACGACCCCCAACTTC 60.672 66.667 0.00 0.00 0.00 3.01
1025 1182 4.147449 CCAGATGTCGCGAGGCCA 62.147 66.667 10.24 4.26 32.11 5.36
1044 1201 0.447801 CGATTTCTCGCCAAACCCTG 59.552 55.000 0.00 0.00 38.20 4.45
1065 1222 3.060615 CCAAGCCAGAGCACAGGC 61.061 66.667 9.58 9.58 46.85 4.85
1116 1273 1.070758 CAGGCGCAGGATTGGTAGTAT 59.929 52.381 10.83 0.00 0.00 2.12
1200 1360 0.317160 TGTCAATCTCCTTGTCGCGT 59.683 50.000 5.77 0.00 36.20 6.01
1520 1680 2.577059 CGTCCGTGCCACCTACAT 59.423 61.111 0.00 0.00 0.00 2.29
1599 1765 6.732896 ATATACCTGTGGTACTCTTTGAGG 57.267 41.667 0.00 0.00 41.31 3.86
1647 1813 1.960689 ACATGAACCTTTTGGAACCGG 59.039 47.619 0.00 0.00 44.07 5.28
1825 1995 0.387622 CGCAGGCATGACCAAACAAG 60.388 55.000 0.62 0.00 43.14 3.16
1837 2007 0.388778 CAATGCAAACATCGCAGGCA 60.389 50.000 0.00 0.00 43.88 4.75
1881 3019 8.331931 ACTTTCTCCAAGGGACATAATATACA 57.668 34.615 0.00 0.00 36.72 2.29
1882 3020 9.057089 CAACTTTCTCCAAGGGACATAATATAC 57.943 37.037 0.00 0.00 36.72 1.47
1883 3021 8.998814 TCAACTTTCTCCAAGGGACATAATATA 58.001 33.333 0.00 0.00 36.72 0.86
1884 3022 7.872138 TCAACTTTCTCCAAGGGACATAATAT 58.128 34.615 0.00 0.00 36.72 1.28
1885 3023 7.265599 TCAACTTTCTCCAAGGGACATAATA 57.734 36.000 0.00 0.00 36.72 0.98
1886 3024 6.139679 TCAACTTTCTCCAAGGGACATAAT 57.860 37.500 0.00 0.00 36.72 1.28
1893 3031 3.439857 TCCATCAACTTTCTCCAAGGG 57.560 47.619 0.00 0.00 36.72 3.95
1894 3032 5.259632 AGAATCCATCAACTTTCTCCAAGG 58.740 41.667 0.00 0.00 36.72 3.61
1895 3033 8.404000 CAATAGAATCCATCAACTTTCTCCAAG 58.596 37.037 0.00 0.00 38.64 3.61
1905 3043 5.812642 ACAGACGACAATAGAATCCATCAAC 59.187 40.000 0.00 0.00 0.00 3.18
1922 3060 4.091075 GCGATCTACGATACATACAGACGA 59.909 45.833 0.00 0.00 45.77 4.20
1923 3061 4.324568 GCGATCTACGATACATACAGACG 58.675 47.826 0.00 0.00 45.77 4.18
1932 3077 4.386049 CAGGAAAATGGCGATCTACGATAC 59.614 45.833 0.00 0.00 45.77 2.24
1933 3078 4.279922 TCAGGAAAATGGCGATCTACGATA 59.720 41.667 0.00 0.00 45.77 2.92
1934 3079 3.069586 TCAGGAAAATGGCGATCTACGAT 59.930 43.478 0.00 0.00 45.77 3.73
1935 3080 2.429250 TCAGGAAAATGGCGATCTACGA 59.571 45.455 0.00 0.00 45.77 3.43
1936 3081 2.821546 TCAGGAAAATGGCGATCTACG 58.178 47.619 0.00 0.00 45.66 3.51
1948 3093 8.821686 TTAGATCAATTGCCTTATCAGGAAAA 57.178 30.769 0.00 0.00 41.66 2.29
2008 3153 2.719046 GGTTGCTTCATTTTCGTTGTCG 59.281 45.455 0.00 0.00 38.55 4.35
2013 3158 1.001815 CACCGGTTGCTTCATTTTCGT 60.002 47.619 2.97 0.00 0.00 3.85
2019 3164 2.115052 TGCCACCGGTTGCTTCAT 59.885 55.556 28.69 0.00 0.00 2.57
2067 3212 7.987268 TTTATAGATCTACTTTGTGCAGTCG 57.013 36.000 4.10 0.00 0.00 4.18
2115 3266 1.938657 CTGTGCGACCTGACTCGGAT 61.939 60.000 0.00 0.00 36.33 4.18
2209 3371 8.428852 AGGCTCACAACCTTTTAAATAAACAAT 58.571 29.630 0.00 0.00 31.87 2.71
2210 3372 7.708752 CAGGCTCACAACCTTTTAAATAAACAA 59.291 33.333 0.00 0.00 34.42 2.83
2212 3374 7.169140 CACAGGCTCACAACCTTTTAAATAAAC 59.831 37.037 0.00 0.00 34.42 2.01
2213 3375 7.206687 CACAGGCTCACAACCTTTTAAATAAA 58.793 34.615 0.00 0.00 34.42 1.40
2215 3377 5.242838 CCACAGGCTCACAACCTTTTAAATA 59.757 40.000 0.00 0.00 34.42 1.40
2216 3378 4.039124 CCACAGGCTCACAACCTTTTAAAT 59.961 41.667 0.00 0.00 34.42 1.40
2218 3380 2.955660 CCACAGGCTCACAACCTTTTAA 59.044 45.455 0.00 0.00 34.42 1.52
2219 3381 2.173782 TCCACAGGCTCACAACCTTTTA 59.826 45.455 0.00 0.00 34.42 1.52
2220 3382 1.064017 TCCACAGGCTCACAACCTTTT 60.064 47.619 0.00 0.00 34.42 2.27
2416 3578 1.247567 CACCAGTCGAGCCCAAAAAT 58.752 50.000 0.00 0.00 0.00 1.82
2853 4046 7.040617 CCCAAGATTTGAGGTCATAATGATGAG 60.041 40.741 0.00 0.00 42.87 2.90
3006 4216 3.057596 CCGAACCTGCACAAACATATGTT 60.058 43.478 15.47 15.47 40.50 2.71
3007 4217 2.487762 CCGAACCTGCACAAACATATGT 59.512 45.455 1.41 1.41 0.00 2.29
3379 4625 0.881118 GATTGTTGAGCCTTCGCCAA 59.119 50.000 0.00 0.00 34.57 4.52
3411 4657 2.983592 CCCCTTGTTGTGGTCGGC 60.984 66.667 0.00 0.00 0.00 5.54
3468 4714 1.926511 GCTGGGACCAAGATGTTGCG 61.927 60.000 0.00 0.00 31.64 4.85
3578 4824 0.178964 CCAGCTTGGTTTTCAGGGGA 60.179 55.000 0.00 0.00 31.35 4.81
3619 4865 2.422939 ATGCAGGGCCTCTCCTAATA 57.577 50.000 0.95 0.00 34.92 0.98
3620 4866 2.264455 CTATGCAGGGCCTCTCCTAAT 58.736 52.381 0.95 0.00 34.92 1.73
3621 4867 1.062121 ACTATGCAGGGCCTCTCCTAA 60.062 52.381 0.95 0.00 34.92 2.69
3622 4868 0.563173 ACTATGCAGGGCCTCTCCTA 59.437 55.000 0.95 0.00 34.92 2.94
3623 4869 0.327000 AACTATGCAGGGCCTCTCCT 60.327 55.000 0.95 0.00 37.71 3.69
3637 4883 6.815089 TGCTCAAATGGTCAAAAACAACTAT 58.185 32.000 0.00 0.00 0.00 2.12
3639 4885 5.083533 TGCTCAAATGGTCAAAAACAACT 57.916 34.783 0.00 0.00 0.00 3.16
3645 4891 8.177119 ACTACTATTTGCTCAAATGGTCAAAA 57.823 30.769 21.88 8.85 45.35 2.44
3647 4893 8.100791 AGTACTACTATTTGCTCAAATGGTCAA 58.899 33.333 21.88 9.67 45.35 3.18
3649 4895 9.250624 CTAGTACTACTATTTGCTCAAATGGTC 57.749 37.037 21.88 11.65 45.35 4.02
3759 5015 2.029828 ACGCTTTGGTGTCAAACAAACA 60.030 40.909 1.03 0.00 37.89 2.83
3760 5016 2.601804 ACGCTTTGGTGTCAAACAAAC 58.398 42.857 1.03 0.00 37.89 2.93
3824 5080 1.005097 TGTACACTAGGCTCCTCCGAA 59.995 52.381 0.00 0.00 40.77 4.30
3825 5081 0.622136 TGTACACTAGGCTCCTCCGA 59.378 55.000 0.00 0.00 40.77 4.55
3850 5106 9.225436 CTCTGAGTTTTCCTAGCTCTAATTTTT 57.775 33.333 0.00 0.00 0.00 1.94
3863 5119 5.930135 TCTAAAGTTGCTCTGAGTTTTCCT 58.070 37.500 6.53 0.00 0.00 3.36
3873 5129 7.115414 AGCTCCAAAATATCTAAAGTTGCTCT 58.885 34.615 0.00 0.00 0.00 4.09
3909 5165 9.627123 CCAGGAGGAGTTATGTCAATAAATAAA 57.373 33.333 0.00 0.00 36.89 1.40
3910 5166 8.998814 TCCAGGAGGAGTTATGTCAATAAATAA 58.001 33.333 0.00 0.00 39.61 1.40
3911 5167 8.561536 TCCAGGAGGAGTTATGTCAATAAATA 57.438 34.615 0.00 0.00 39.61 1.40
3912 5168 7.451731 TCCAGGAGGAGTTATGTCAATAAAT 57.548 36.000 0.00 0.00 39.61 1.40
3935 5191 5.573337 ATGCTGAAATTTTCTAGGTGCTC 57.427 39.130 10.33 0.00 0.00 4.26
3937 5193 4.142600 ACGATGCTGAAATTTTCTAGGTGC 60.143 41.667 10.33 7.41 0.00 5.01
3938 5194 5.551760 ACGATGCTGAAATTTTCTAGGTG 57.448 39.130 10.33 0.03 0.00 4.00
3939 5195 4.330074 CGACGATGCTGAAATTTTCTAGGT 59.670 41.667 10.33 0.99 0.00 3.08
3940 5196 4.330074 ACGACGATGCTGAAATTTTCTAGG 59.670 41.667 0.00 2.77 0.00 3.02
3941 5197 5.163953 ACACGACGATGCTGAAATTTTCTAG 60.164 40.000 0.00 7.27 0.00 2.43
3942 5198 4.688879 ACACGACGATGCTGAAATTTTCTA 59.311 37.500 0.00 0.00 0.00 2.10
3943 5199 3.498397 ACACGACGATGCTGAAATTTTCT 59.502 39.130 0.00 0.00 0.00 2.52
3944 5200 3.810373 ACACGACGATGCTGAAATTTTC 58.190 40.909 0.00 2.05 0.00 2.29
3945 5201 3.249799 TGACACGACGATGCTGAAATTTT 59.750 39.130 0.00 0.00 0.00 1.82
3946 5202 2.805671 TGACACGACGATGCTGAAATTT 59.194 40.909 0.00 0.00 0.00 1.82
3947 5203 2.412870 TGACACGACGATGCTGAAATT 58.587 42.857 0.00 0.00 0.00 1.82
3948 5204 2.078849 TGACACGACGATGCTGAAAT 57.921 45.000 0.00 0.00 0.00 2.17
3949 5205 1.859383 TTGACACGACGATGCTGAAA 58.141 45.000 0.00 0.00 0.00 2.69
3950 5206 1.859383 TTTGACACGACGATGCTGAA 58.141 45.000 0.00 0.00 0.00 3.02
3951 5207 1.859383 TTTTGACACGACGATGCTGA 58.141 45.000 0.00 0.00 0.00 4.26
3952 5208 2.661504 TTTTTGACACGACGATGCTG 57.338 45.000 0.00 0.00 0.00 4.41
4073 5329 6.065374 TGGGAGTTTTATTGCTGAAGTGTAA 58.935 36.000 0.00 0.00 0.00 2.41
4077 5333 5.140454 ACTTGGGAGTTTTATTGCTGAAGT 58.860 37.500 0.00 0.00 29.87 3.01
4081 5337 5.222631 GTGAACTTGGGAGTTTTATTGCTG 58.777 41.667 0.00 0.00 45.88 4.41
4114 5370 3.028130 TCGTTGATGTAGCATCACCCTA 58.972 45.455 10.88 0.00 0.00 3.53
4117 5373 2.616960 TGTCGTTGATGTAGCATCACC 58.383 47.619 10.88 4.23 0.00 4.02
4162 5421 8.293699 TCTATAGACTGAATTCACTGTTAGCA 57.706 34.615 3.38 0.00 0.00 3.49
4186 5445 9.113876 CGGCGATAAATAATACTGGAAAATTTC 57.886 33.333 0.00 0.00 0.00 2.17
4197 5457 8.690680 AGAGAGAATTCGGCGATAAATAATAC 57.309 34.615 11.76 0.00 0.00 1.89
4198 5458 9.355215 GAAGAGAGAATTCGGCGATAAATAATA 57.645 33.333 11.76 0.00 0.00 0.98
4200 5460 7.207383 TGAAGAGAGAATTCGGCGATAAATAA 58.793 34.615 11.76 0.00 0.00 1.40
4202 5462 5.601662 TGAAGAGAGAATTCGGCGATAAAT 58.398 37.500 11.76 0.00 0.00 1.40
4204 5464 4.649088 TGAAGAGAGAATTCGGCGATAA 57.351 40.909 11.76 0.00 0.00 1.75
4205 5465 4.649088 TTGAAGAGAGAATTCGGCGATA 57.351 40.909 11.76 1.84 0.00 2.92
4206 5466 3.526931 TTGAAGAGAGAATTCGGCGAT 57.473 42.857 11.76 0.00 0.00 4.58
4211 5479 7.042725 TGCGGTATAAATTGAAGAGAGAATTCG 60.043 37.037 0.00 0.00 0.00 3.34
4217 5515 5.276868 CCGTTGCGGTATAAATTGAAGAGAG 60.277 44.000 0.00 0.00 42.73 3.20
4300 5804 0.248054 ACTTTGTGCGCAAACTGACG 60.248 50.000 21.05 13.40 39.43 4.35
4309 5872 0.790866 GCTTCATCGACTTTGTGCGC 60.791 55.000 0.00 0.00 0.00 6.09
4339 5902 3.482156 AGCATGTAGTAATCCAGGCTG 57.518 47.619 7.75 7.75 45.88 4.85
4358 5924 2.095263 CCAACATTTACAAGACCGGCAG 60.095 50.000 0.00 0.00 0.00 4.85
4372 5938 4.087182 TCTCGAAGTCTCTACCCAACATT 58.913 43.478 0.00 0.00 0.00 2.71
4380 5946 4.004982 AGGTTCACTCTCGAAGTCTCTAC 58.995 47.826 0.00 0.00 35.45 2.59
4417 5983 0.669318 CTCGCCGTGTTAGCTTGGAA 60.669 55.000 0.00 0.00 0.00 3.53
4418 5984 1.080093 CTCGCCGTGTTAGCTTGGA 60.080 57.895 0.00 0.00 0.00 3.53
4420 5986 0.647410 CATCTCGCCGTGTTAGCTTG 59.353 55.000 0.00 0.00 0.00 4.01
4422 5988 0.747255 ATCATCTCGCCGTGTTAGCT 59.253 50.000 0.00 0.00 0.00 3.32
4423 5989 1.132588 GATCATCTCGCCGTGTTAGC 58.867 55.000 0.00 0.00 0.00 3.09
4424 5990 1.338337 AGGATCATCTCGCCGTGTTAG 59.662 52.381 0.00 0.00 0.00 2.34
4429 5995 1.269102 CGTAAAGGATCATCTCGCCGT 60.269 52.381 0.00 0.00 0.00 5.68
4430 5996 1.409412 CGTAAAGGATCATCTCGCCG 58.591 55.000 0.00 0.00 0.00 6.46
4431 5997 1.140816 GCGTAAAGGATCATCTCGCC 58.859 55.000 10.90 0.00 36.95 5.54
4458 6027 1.175983 TCATTCACCAACCGGGCAAC 61.176 55.000 6.32 0.00 42.05 4.17
4473 6042 2.947652 CCTGTCAGCGATGGAAATCATT 59.052 45.455 0.00 0.00 35.97 2.57
4538 6107 1.039856 TTGTTTTGCTTGGAGGCCTC 58.960 50.000 25.59 25.59 0.00 4.70
4539 6108 1.720781 ATTGTTTTGCTTGGAGGCCT 58.279 45.000 3.86 3.86 0.00 5.19
4540 6109 2.549064 AATTGTTTTGCTTGGAGGCC 57.451 45.000 0.00 0.00 0.00 5.19
4541 6110 4.257267 ACTAATTGTTTTGCTTGGAGGC 57.743 40.909 0.00 0.00 0.00 4.70
4542 6111 6.381801 CAGTACTAATTGTTTTGCTTGGAGG 58.618 40.000 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.