Multiple sequence alignment - TraesCS5A01G061600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G061600 chr5A 100.000 3368 0 0 1 3368 65009902 65013269 0.000000e+00 6220.0
1 TraesCS5A01G061600 chr5A 88.097 1193 113 11 1290 2480 65355269 65356434 0.000000e+00 1389.0
2 TraesCS5A01G061600 chr5A 87.479 1206 139 7 1290 2491 65360207 65361404 0.000000e+00 1380.0
3 TraesCS5A01G061600 chr5A 92.086 417 29 3 2952 3368 65361816 65362228 4.840000e-163 584.0
4 TraesCS5A01G061600 chr5A 88.571 315 33 3 2641 2954 65361465 65361777 2.450000e-101 379.0
5 TraesCS5A01G061600 chr5A 86.647 337 38 5 2153 2489 67317606 67317935 1.910000e-97 366.0
6 TraesCS5A01G061600 chr5A 80.682 264 36 6 936 1185 65359797 65360059 1.230000e-44 191.0
7 TraesCS5A01G061600 chr5A 94.444 108 6 0 2534 2641 88349829 88349722 2.080000e-37 167.0
8 TraesCS5A01G061600 chr5A 93.636 110 7 0 2532 2641 493473767 493473876 7.480000e-37 165.0
9 TraesCS5A01G061600 chr5A 88.618 123 14 0 2524 2646 337823105 337822983 2.090000e-32 150.0
10 TraesCS5A01G061600 chr5A 82.609 115 20 0 1357 1471 65712209 65712323 5.950000e-18 102.0
11 TraesCS5A01G061600 chr5B 89.657 1953 146 30 527 2467 79563064 79561156 0.000000e+00 2436.0
12 TraesCS5A01G061600 chr5B 87.993 1216 113 13 1290 2492 79423533 79422338 0.000000e+00 1406.0
13 TraesCS5A01G061600 chr5B 89.531 277 29 0 2640 2916 79560933 79560657 5.350000e-93 351.0
14 TraesCS5A01G061600 chr5B 91.388 209 16 2 3161 3368 79544865 79544658 5.500000e-73 285.0
15 TraesCS5A01G061600 chr5B 81.461 356 39 13 810 1150 79423942 79423599 1.990000e-67 267.0
16 TraesCS5A01G061600 chr5B 83.886 211 20 8 2952 3161 79560582 79560385 4.440000e-44 189.0
17 TraesCS5A01G061600 chr5B 89.516 124 12 1 2520 2642 278886864 278886987 4.500000e-34 156.0
18 TraesCS5A01G061600 chr5B 86.325 117 7 5 2 118 79563163 79563056 5.900000e-23 119.0
19 TraesCS5A01G061600 chr5B 76.923 182 33 4 1290 1471 79542419 79542247 9.950000e-16 95.3
20 TraesCS5A01G061600 chr5D 89.383 1978 140 28 527 2491 72589171 72591091 0.000000e+00 2425.0
21 TraesCS5A01G061600 chr5D 89.156 1125 98 5 1290 2405 72613492 72614601 0.000000e+00 1380.0
22 TraesCS5A01G061600 chr5D 97.847 418 8 1 2952 3368 72591725 72592142 0.000000e+00 721.0
23 TraesCS5A01G061600 chr5D 88.772 570 34 9 2640 3185 72591151 72591714 0.000000e+00 671.0
24 TraesCS5A01G061600 chr5D 78.304 401 49 18 809 1185 72613081 72613467 1.220000e-54 224.0
25 TraesCS5A01G061600 chr5D 92.500 120 6 1 2 118 72589060 72589179 5.780000e-38 169.0
26 TraesCS5A01G061600 chr5D 90.678 118 11 0 2524 2641 547442030 547442147 1.250000e-34 158.0
27 TraesCS5A01G061600 chr6D 80.714 420 60 11 110 524 237813023 237813426 1.170000e-79 307.0
28 TraesCS5A01G061600 chr6D 93.103 116 7 1 2531 2646 103085451 103085337 5.780000e-38 169.0
29 TraesCS5A01G061600 chr3D 84.884 258 38 1 176 432 160523378 160523121 3.330000e-65 259.0
30 TraesCS5A01G061600 chr3D 88.976 127 13 1 2516 2641 463852274 463852400 4.500000e-34 156.0
31 TraesCS5A01G061600 chr1D 80.707 311 50 10 218 525 473592411 473592714 2.020000e-57 233.0
32 TraesCS5A01G061600 chr7D 78.652 356 62 11 176 525 41801334 41801681 1.220000e-54 224.0
33 TraesCS5A01G061600 chr2A 79.104 335 62 6 176 508 762453682 762453354 1.220000e-54 224.0
34 TraesCS5A01G061600 chr2A 90.756 119 11 0 2526 2644 468295293 468295411 3.480000e-35 159.0
35 TraesCS5A01G061600 chr1A 80.064 311 53 8 218 525 567812180 567812484 4.370000e-54 222.0
36 TraesCS5A01G061600 chr1A 80.064 311 53 8 218 525 567855044 567855348 4.370000e-54 222.0
37 TraesCS5A01G061600 chr1A 79.743 311 54 8 218 525 567828640 567828944 2.030000e-52 217.0
38 TraesCS5A01G061600 chr1A 79.487 312 54 7 218 525 567913678 567913983 2.630000e-51 213.0
39 TraesCS5A01G061600 chrUn 93.966 116 6 1 2531 2646 218481709 218481595 1.240000e-39 174.0
40 TraesCS5A01G061600 chr2D 92.373 118 9 0 2525 2642 367501661 367501544 5.780000e-38 169.0
41 TraesCS5A01G061600 chr6A 92.857 112 8 0 2531 2642 181521023 181521134 2.690000e-36 163.0
42 TraesCS5A01G061600 chr7A 90.083 121 11 1 2521 2641 139051633 139051514 4.500000e-34 156.0
43 TraesCS5A01G061600 chr7A 89.831 118 12 0 2525 2642 166792069 166791952 5.820000e-33 152.0
44 TraesCS5A01G061600 chr3A 90.598 117 9 2 2526 2641 233523138 233523253 1.620000e-33 154.0
45 TraesCS5A01G061600 chr4A 100.000 28 0 0 1227 1254 29152695 29152668 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G061600 chr5A 65009902 65013269 3367 False 6220.00 6220 100.00000 1 3368 1 chr5A.!!$F1 3367
1 TraesCS5A01G061600 chr5A 65355269 65362228 6959 False 784.60 1389 87.38300 936 3368 5 chr5A.!!$F5 2432
2 TraesCS5A01G061600 chr5B 79422338 79423942 1604 True 836.50 1406 84.72700 810 2492 2 chr5B.!!$R1 1682
3 TraesCS5A01G061600 chr5B 79560385 79563163 2778 True 773.75 2436 87.34975 2 3161 4 chr5B.!!$R3 3159
4 TraesCS5A01G061600 chr5D 72589060 72592142 3082 False 996.50 2425 92.12550 2 3368 4 chr5D.!!$F2 3366
5 TraesCS5A01G061600 chr5D 72613081 72614601 1520 False 802.00 1380 83.73000 809 2405 2 chr5D.!!$F3 1596

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
420 421 0.030638 GCGCACCTCACACAACAAAT 59.969 50.0 0.30 0.0 0.00 2.32 F
516 517 0.034767 TGAGGCCAGGCTCAGAATTG 60.035 55.0 18.95 0.0 0.00 2.32 F
519 520 0.106318 GGCCAGGCTCAGAATTGGAT 60.106 55.0 12.43 0.0 32.34 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2349 6118 0.104855 GTCAGGACATATCAGCGCCA 59.895 55.000 2.29 0.0 0.00 5.69 R
2351 6120 1.594862 GTTGTCAGGACATATCAGCGC 59.405 52.381 0.00 0.0 41.52 5.92 R
2418 6197 5.444586 GTCAATGCGACGACTTTGTAATA 57.555 39.130 0.00 0.0 34.19 0.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.715523 GCTACCGGCAGCCACCAA 62.716 66.667 16.40 0.00 41.35 3.67
52 53 0.178998 GATCCACCTCCATGCTGCAT 60.179 55.000 9.81 9.81 0.00 3.96
62 63 7.105588 CACCTCCATGCTGCATAAATATACTA 58.894 38.462 15.78 0.00 0.00 1.82
64 65 8.331740 ACCTCCATGCTGCATAAATATACTAAT 58.668 33.333 15.78 0.00 0.00 1.73
120 121 9.442047 ACTTAATGTAGTACTACTTACACGAGT 57.558 33.333 28.56 19.70 37.00 4.18
121 122 9.699985 CTTAATGTAGTACTACTTACACGAGTG 57.300 37.037 28.56 1.13 37.00 3.51
122 123 7.912056 AATGTAGTACTACTTACACGAGTGA 57.088 36.000 28.56 8.76 37.00 3.41
124 125 5.871524 TGTAGTACTACTTACACGAGTGAGG 59.128 44.000 28.56 2.41 35.79 3.86
125 126 3.688673 AGTACTACTTACACGAGTGAGGC 59.311 47.826 10.50 0.00 35.79 4.70
127 128 1.467734 CTACTTACACGAGTGAGGCGT 59.532 52.381 10.50 4.32 43.67 5.68
128 129 0.672342 ACTTACACGAGTGAGGCGTT 59.328 50.000 10.50 0.00 40.44 4.84
129 130 1.068127 ACTTACACGAGTGAGGCGTTT 59.932 47.619 10.50 0.00 40.44 3.60
130 131 2.132762 CTTACACGAGTGAGGCGTTTT 58.867 47.619 10.50 0.00 40.44 2.43
140 141 4.038080 GGCGTTTTGGCTCCCACG 62.038 66.667 0.00 0.00 40.72 4.94
141 142 4.700365 GCGTTTTGGCTCCCACGC 62.700 66.667 10.29 10.29 38.81 5.34
143 144 2.954611 GTTTTGGCTCCCACGCTC 59.045 61.111 0.00 0.00 30.78 5.03
144 145 1.896660 GTTTTGGCTCCCACGCTCA 60.897 57.895 0.00 0.00 30.78 4.26
145 146 1.074775 TTTTGGCTCCCACGCTCAT 59.925 52.632 0.00 0.00 30.78 2.90
146 147 0.326595 TTTTGGCTCCCACGCTCATA 59.673 50.000 0.00 0.00 30.78 2.15
147 148 0.546122 TTTGGCTCCCACGCTCATAT 59.454 50.000 0.00 0.00 30.78 1.78
148 149 0.179048 TTGGCTCCCACGCTCATATG 60.179 55.000 0.00 0.00 30.78 1.78
149 150 1.963338 GGCTCCCACGCTCATATGC 60.963 63.158 0.00 0.00 0.00 3.14
150 151 1.227645 GCTCCCACGCTCATATGCA 60.228 57.895 0.00 0.00 0.00 3.96
154 155 2.246739 CCACGCTCATATGCACCCG 61.247 63.158 0.00 0.62 0.00 5.28
155 156 2.588877 ACGCTCATATGCACCCGC 60.589 61.111 0.00 0.00 39.24 6.13
156 157 3.705638 CGCTCATATGCACCCGCG 61.706 66.667 0.00 0.00 42.97 6.46
157 158 2.588877 GCTCATATGCACCCGCGT 60.589 61.111 4.92 0.00 42.97 6.01
158 159 2.598632 GCTCATATGCACCCGCGTC 61.599 63.158 4.92 0.00 42.97 5.19
159 160 2.279186 TCATATGCACCCGCGTCG 60.279 61.111 4.92 0.00 42.97 5.12
160 161 2.279186 CATATGCACCCGCGTCGA 60.279 61.111 4.92 0.00 42.97 4.20
161 162 1.880796 CATATGCACCCGCGTCGAA 60.881 57.895 4.92 0.00 42.97 3.71
162 163 1.069090 ATATGCACCCGCGTCGAAT 59.931 52.632 4.92 0.00 42.97 3.34
163 164 0.315886 ATATGCACCCGCGTCGAATA 59.684 50.000 4.92 0.00 42.97 1.75
164 165 0.102663 TATGCACCCGCGTCGAATAA 59.897 50.000 4.92 0.00 42.97 1.40
165 166 0.531974 ATGCACCCGCGTCGAATAAT 60.532 50.000 4.92 0.00 42.97 1.28
166 167 0.741574 TGCACCCGCGTCGAATAATT 60.742 50.000 4.92 0.00 42.97 1.40
167 168 0.375803 GCACCCGCGTCGAATAATTT 59.624 50.000 4.92 0.00 0.00 1.82
168 169 1.202098 GCACCCGCGTCGAATAATTTT 60.202 47.619 4.92 0.00 0.00 1.82
169 170 2.729778 GCACCCGCGTCGAATAATTTTT 60.730 45.455 4.92 0.00 0.00 1.94
236 237 7.433708 TTGGTATGATAGATAATTTGGTGCG 57.566 36.000 0.00 0.00 0.00 5.34
237 238 6.530120 TGGTATGATAGATAATTTGGTGCGT 58.470 36.000 0.00 0.00 0.00 5.24
238 239 6.426633 TGGTATGATAGATAATTTGGTGCGTG 59.573 38.462 0.00 0.00 0.00 5.34
239 240 6.649141 GGTATGATAGATAATTTGGTGCGTGA 59.351 38.462 0.00 0.00 0.00 4.35
241 242 6.544038 TGATAGATAATTTGGTGCGTGATG 57.456 37.500 0.00 0.00 0.00 3.07
242 243 6.054941 TGATAGATAATTTGGTGCGTGATGT 58.945 36.000 0.00 0.00 0.00 3.06
243 244 7.213678 TGATAGATAATTTGGTGCGTGATGTA 58.786 34.615 0.00 0.00 0.00 2.29
244 245 5.734855 AGATAATTTGGTGCGTGATGTAC 57.265 39.130 0.00 0.00 0.00 2.90
255 256 3.740044 CGTGATGTACGCTCCAAATTT 57.260 42.857 0.00 0.00 46.92 1.82
256 257 3.670203 CGTGATGTACGCTCCAAATTTC 58.330 45.455 0.00 0.00 46.92 2.17
260 261 5.342259 GTGATGTACGCTCCAAATTTCAAAC 59.658 40.000 0.00 0.00 0.00 2.93
261 262 4.231718 TGTACGCTCCAAATTTCAAACC 57.768 40.909 0.00 0.00 0.00 3.27
264 265 4.335400 ACGCTCCAAATTTCAAACCATT 57.665 36.364 0.00 0.00 0.00 3.16
265 266 4.702831 ACGCTCCAAATTTCAAACCATTT 58.297 34.783 0.00 0.00 0.00 2.32
266 267 4.511082 ACGCTCCAAATTTCAAACCATTTG 59.489 37.500 0.00 0.00 39.25 2.32
273 274 7.733402 CAAATTTCAAACCATTTGGACATCT 57.267 32.000 3.01 0.00 40.98 2.90
275 276 6.669125 ATTTCAAACCATTTGGACATCTGA 57.331 33.333 3.01 0.00 40.98 3.27
277 278 4.728772 TCAAACCATTTGGACATCTGAGT 58.271 39.130 3.01 0.00 40.98 3.41
278 279 5.875224 TCAAACCATTTGGACATCTGAGTA 58.125 37.500 3.01 0.00 40.98 2.59
279 280 6.303054 TCAAACCATTTGGACATCTGAGTAA 58.697 36.000 3.01 0.00 40.98 2.24
280 281 6.947733 TCAAACCATTTGGACATCTGAGTAAT 59.052 34.615 3.01 0.00 40.98 1.89
281 282 7.451255 TCAAACCATTTGGACATCTGAGTAATT 59.549 33.333 3.01 0.00 40.98 1.40
283 284 6.725364 ACCATTTGGACATCTGAGTAATTCT 58.275 36.000 3.01 0.00 38.94 2.40
284 285 7.177878 ACCATTTGGACATCTGAGTAATTCTT 58.822 34.615 3.01 0.00 38.94 2.52
286 287 7.415989 CCATTTGGACATCTGAGTAATTCTTGG 60.416 40.741 0.00 0.00 37.39 3.61
288 289 4.019411 TGGACATCTGAGTAATTCTTGGCA 60.019 41.667 0.00 0.00 0.00 4.92
290 291 5.415701 GGACATCTGAGTAATTCTTGGCAAA 59.584 40.000 0.00 0.00 0.00 3.68
292 293 7.363268 GGACATCTGAGTAATTCTTGGCAAAAT 60.363 37.037 0.00 1.81 0.00 1.82
294 295 9.023962 ACATCTGAGTAATTCTTGGCAAAATAA 57.976 29.630 0.00 0.00 0.00 1.40
295 296 9.859427 CATCTGAGTAATTCTTGGCAAAATAAA 57.141 29.630 0.00 0.00 0.00 1.40
345 346 6.288294 TGCTATTCATATACTGTTGTGACCC 58.712 40.000 0.00 0.00 0.00 4.46
346 347 6.126911 TGCTATTCATATACTGTTGTGACCCA 60.127 38.462 0.00 0.00 0.00 4.51
347 348 6.765989 GCTATTCATATACTGTTGTGACCCAA 59.234 38.462 0.00 0.00 0.00 4.12
348 349 7.445402 GCTATTCATATACTGTTGTGACCCAAT 59.555 37.037 0.00 0.00 35.02 3.16
350 351 8.593945 ATTCATATACTGTTGTGACCCAATTT 57.406 30.769 0.00 0.00 35.02 1.82
352 353 6.945435 TCATATACTGTTGTGACCCAATTTGT 59.055 34.615 0.00 0.00 35.02 2.83
353 354 5.705609 ATACTGTTGTGACCCAATTTGTC 57.294 39.130 0.00 0.00 35.02 3.18
354 355 3.631250 ACTGTTGTGACCCAATTTGTCT 58.369 40.909 6.47 0.00 35.02 3.41
355 356 4.023291 ACTGTTGTGACCCAATTTGTCTT 58.977 39.130 6.47 0.00 35.02 3.01
356 357 4.466015 ACTGTTGTGACCCAATTTGTCTTT 59.534 37.500 6.47 0.00 35.02 2.52
357 358 5.046663 ACTGTTGTGACCCAATTTGTCTTTT 60.047 36.000 6.47 0.00 35.02 2.27
358 359 5.799213 TGTTGTGACCCAATTTGTCTTTTT 58.201 33.333 6.47 0.00 35.02 1.94
379 380 7.466746 TTTTTGCTAAGAGCTATCCAAATGT 57.533 32.000 0.00 0.00 42.97 2.71
380 381 6.683974 TTTGCTAAGAGCTATCCAAATGTC 57.316 37.500 0.00 0.00 42.97 3.06
383 384 5.126067 GCTAAGAGCTATCCAAATGTCCAA 58.874 41.667 0.00 0.00 38.45 3.53
384 385 5.590259 GCTAAGAGCTATCCAAATGTCCAAA 59.410 40.000 0.00 0.00 38.45 3.28
385 386 6.264067 GCTAAGAGCTATCCAAATGTCCAAAT 59.736 38.462 0.00 0.00 38.45 2.32
386 387 7.445402 GCTAAGAGCTATCCAAATGTCCAAATA 59.555 37.037 0.00 0.00 38.45 1.40
388 389 6.904626 AGAGCTATCCAAATGTCCAAATACT 58.095 36.000 0.00 0.00 0.00 2.12
389 390 6.995091 AGAGCTATCCAAATGTCCAAATACTC 59.005 38.462 0.00 0.00 0.00 2.59
392 393 6.767902 GCTATCCAAATGTCCAAATACTCTGA 59.232 38.462 0.00 0.00 0.00 3.27
393 394 7.283127 GCTATCCAAATGTCCAAATACTCTGAA 59.717 37.037 0.00 0.00 0.00 3.02
394 395 9.177608 CTATCCAAATGTCCAAATACTCTGAAA 57.822 33.333 0.00 0.00 0.00 2.69
395 396 8.599624 ATCCAAATGTCCAAATACTCTGAAAT 57.400 30.769 0.00 0.00 0.00 2.17
396 397 8.421249 TCCAAATGTCCAAATACTCTGAAATT 57.579 30.769 0.00 0.00 0.00 1.82
397 398 8.869109 TCCAAATGTCCAAATACTCTGAAATTT 58.131 29.630 0.00 0.00 0.00 1.82
398 399 8.928733 CCAAATGTCCAAATACTCTGAAATTTG 58.071 33.333 13.98 13.98 40.94 2.32
399 400 9.695526 CAAATGTCCAAATACTCTGAAATTTGA 57.304 29.630 19.17 6.92 42.90 2.69
401 402 7.452880 TGTCCAAATACTCTGAAATTTGAGG 57.547 36.000 19.17 9.35 42.90 3.86
404 405 4.622701 AATACTCTGAAATTTGAGGCGC 57.377 40.909 0.00 0.00 34.84 6.53
405 406 1.896220 ACTCTGAAATTTGAGGCGCA 58.104 45.000 10.83 0.00 34.84 6.09
406 407 1.537202 ACTCTGAAATTTGAGGCGCAC 59.463 47.619 10.83 2.81 34.84 5.34
416 417 2.591715 AGGCGCACCTCACACAAC 60.592 61.111 10.83 0.00 46.34 3.32
417 418 2.899838 GGCGCACCTCACACAACA 60.900 61.111 10.83 0.00 0.00 3.33
418 419 2.477176 GGCGCACCTCACACAACAA 61.477 57.895 10.83 0.00 0.00 2.83
420 421 0.030638 GCGCACCTCACACAACAAAT 59.969 50.000 0.30 0.00 0.00 2.32
421 422 1.535860 GCGCACCTCACACAACAAATT 60.536 47.619 0.30 0.00 0.00 1.82
422 423 2.287308 GCGCACCTCACACAACAAATTA 60.287 45.455 0.30 0.00 0.00 1.40
423 424 3.611530 GCGCACCTCACACAACAAATTAT 60.612 43.478 0.30 0.00 0.00 1.28
424 425 4.158384 CGCACCTCACACAACAAATTATC 58.842 43.478 0.00 0.00 0.00 1.75
425 426 4.083324 CGCACCTCACACAACAAATTATCT 60.083 41.667 0.00 0.00 0.00 1.98
426 427 5.121611 CGCACCTCACACAACAAATTATCTA 59.878 40.000 0.00 0.00 0.00 1.98
427 428 6.314784 GCACCTCACACAACAAATTATCTAC 58.685 40.000 0.00 0.00 0.00 2.59
428 429 6.622896 GCACCTCACACAACAAATTATCTACC 60.623 42.308 0.00 0.00 0.00 3.18
429 430 6.655003 CACCTCACACAACAAATTATCTACCT 59.345 38.462 0.00 0.00 0.00 3.08
432 433 7.362056 CCTCACACAACAAATTATCTACCTTGG 60.362 40.741 0.00 0.00 0.00 3.61
434 435 7.174253 TCACACAACAAATTATCTACCTTGGAC 59.826 37.037 0.00 0.00 0.00 4.02
435 436 7.001674 ACACAACAAATTATCTACCTTGGACA 58.998 34.615 0.00 0.00 0.00 4.02
493 494 7.527568 TTTTAATTATTTCTTGTCCGGGTGT 57.472 32.000 0.00 0.00 0.00 4.16
494 495 8.632906 TTTTAATTATTTCTTGTCCGGGTGTA 57.367 30.769 0.00 0.00 0.00 2.90
495 496 7.852971 TTAATTATTTCTTGTCCGGGTGTAG 57.147 36.000 0.00 0.00 0.00 2.74
497 498 5.687166 TTATTTCTTGTCCGGGTGTAGAT 57.313 39.130 0.00 0.00 0.00 1.98
498 499 3.328382 TTTCTTGTCCGGGTGTAGATG 57.672 47.619 0.00 0.00 0.00 2.90
500 501 2.100197 TCTTGTCCGGGTGTAGATGAG 58.900 52.381 0.00 0.00 0.00 2.90
501 502 1.137086 CTTGTCCGGGTGTAGATGAGG 59.863 57.143 0.00 0.00 0.00 3.86
503 504 1.760875 TCCGGGTGTAGATGAGGCC 60.761 63.158 0.00 0.00 0.00 5.19
504 505 2.063979 CCGGGTGTAGATGAGGCCA 61.064 63.158 5.01 0.00 0.00 5.36
505 506 1.443407 CGGGTGTAGATGAGGCCAG 59.557 63.158 5.01 0.00 0.00 4.85
506 507 1.832912 GGGTGTAGATGAGGCCAGG 59.167 63.158 5.01 0.00 0.00 4.45
507 508 1.147153 GGTGTAGATGAGGCCAGGC 59.853 63.158 5.01 1.26 0.00 4.85
509 510 0.105778 GTGTAGATGAGGCCAGGCTC 59.894 60.000 12.43 13.93 0.00 4.70
510 511 0.325577 TGTAGATGAGGCCAGGCTCA 60.326 55.000 24.03 24.03 0.00 4.26
511 512 0.392336 GTAGATGAGGCCAGGCTCAG 59.608 60.000 25.44 0.00 32.74 3.35
513 514 0.619832 AGATGAGGCCAGGCTCAGAA 60.620 55.000 25.44 6.18 32.74 3.02
514 515 0.473326 GATGAGGCCAGGCTCAGAAT 59.527 55.000 25.44 11.98 32.74 2.40
515 516 0.924823 ATGAGGCCAGGCTCAGAATT 59.075 50.000 25.44 9.26 32.74 2.17
516 517 0.034767 TGAGGCCAGGCTCAGAATTG 60.035 55.000 18.95 0.00 0.00 2.32
517 518 0.750911 GAGGCCAGGCTCAGAATTGG 60.751 60.000 12.43 0.00 0.00 3.16
518 519 1.210204 AGGCCAGGCTCAGAATTGGA 61.210 55.000 12.43 0.00 32.34 3.53
519 520 0.106318 GGCCAGGCTCAGAATTGGAT 60.106 55.000 12.43 0.00 32.34 3.41
520 521 1.143684 GGCCAGGCTCAGAATTGGATA 59.856 52.381 12.43 0.00 32.34 2.59
521 522 2.224967 GGCCAGGCTCAGAATTGGATAT 60.225 50.000 12.43 0.00 32.34 1.63
524 525 3.750130 CCAGGCTCAGAATTGGATATTCG 59.250 47.826 0.00 0.00 33.51 3.34
525 526 3.188048 CAGGCTCAGAATTGGATATTCGC 59.812 47.826 0.00 0.00 33.51 4.70
552 553 1.286354 CGCGCTTTCGTTCCCAGTAA 61.286 55.000 5.56 0.00 38.14 2.24
559 560 6.617953 GCGCTTTCGTTCCCAGTAATATATTC 60.618 42.308 0.00 0.00 38.14 1.75
614 615 0.718904 TCAACACATGATACGCGTGC 59.281 50.000 24.59 14.61 36.99 5.34
634 635 4.843984 GTGCGTATTGTACAATCAACACAC 59.156 41.667 24.00 21.13 32.10 3.82
655 656 1.258982 GATACGCGTGAAGGCAAGATG 59.741 52.381 24.59 0.00 0.00 2.90
698 700 3.044156 AGAGCTTAATCTGATCCAGCCA 58.956 45.455 14.30 0.00 0.00 4.75
738 740 1.423845 GAACCGCATAGCCACAACG 59.576 57.895 0.00 0.00 0.00 4.10
755 757 4.509970 CACAACGTTACATTGGACAGAGAA 59.490 41.667 0.00 0.00 0.00 2.87
767 769 3.256879 TGGACAGAGAAGCAGACTTACAG 59.743 47.826 0.00 0.00 35.82 2.74
768 770 3.249917 GACAGAGAAGCAGACTTACAGC 58.750 50.000 0.00 0.00 35.82 4.40
785 787 7.433680 ACTTACAGCTGACCCAAATTAAAAAG 58.566 34.615 23.35 6.76 0.00 2.27
803 805 9.791801 ATTAAAAAGGAAACAAATATGGCAAGT 57.208 25.926 0.00 0.00 0.00 3.16
806 808 3.515104 AGGAAACAAATATGGCAAGTGGG 59.485 43.478 0.00 0.00 0.00 4.61
808 810 4.162131 GGAAACAAATATGGCAAGTGGGAT 59.838 41.667 0.00 0.00 0.00 3.85
812 814 4.834496 ACAAATATGGCAAGTGGGATATGG 59.166 41.667 0.00 0.00 0.00 2.74
869 873 2.679082 CAGGCCCTATATATACCGGCT 58.321 52.381 18.98 12.53 39.64 5.52
873 877 3.573110 GGCCCTATATATACCGGCTACAG 59.427 52.174 18.98 0.00 39.64 2.74
926 930 2.510768 ACTTGGAAGTCGAGACACAC 57.489 50.000 5.99 0.00 32.86 3.82
963 4560 6.051717 ACATATCCATACTTCTGTTGCTCAC 58.948 40.000 0.00 0.00 0.00 3.51
1119 4730 2.105128 CTGGAGAAGGGCTACGCG 59.895 66.667 3.53 3.53 0.00 6.01
1195 4812 4.343814 TGCTAATCTCCATTGGATCGTGTA 59.656 41.667 5.70 0.00 0.00 2.90
1196 4813 4.926238 GCTAATCTCCATTGGATCGTGTAG 59.074 45.833 5.70 5.49 0.00 2.74
1205 4822 4.937201 TTGGATCGTGTAGCAGTGATAT 57.063 40.909 0.00 0.00 0.00 1.63
1207 4824 5.276461 TGGATCGTGTAGCAGTGATATTT 57.724 39.130 0.00 0.00 0.00 1.40
1208 4825 5.289595 TGGATCGTGTAGCAGTGATATTTC 58.710 41.667 0.00 0.00 0.00 2.17
1209 4826 5.163457 TGGATCGTGTAGCAGTGATATTTCA 60.163 40.000 0.00 0.00 0.00 2.69
1221 4841 6.989169 GCAGTGATATTTCATGTACTTCCTCT 59.011 38.462 0.00 0.00 33.56 3.69
1265 4885 9.194271 GCTGCTTTAGTACAAGGAGTATATAAC 57.806 37.037 13.59 0.00 42.63 1.89
1350 5095 1.221021 CTTGGAAGGGGCTACGGAC 59.779 63.158 0.00 0.00 0.00 4.79
1482 5227 5.873712 GGTACTTTACTTAGTTCTTCAGCCC 59.126 44.000 0.00 0.00 0.00 5.19
1504 5264 2.546899 ACCCACATTGGAGTACTAGCA 58.453 47.619 0.00 0.00 40.96 3.49
1523 5283 2.672874 GCAGCTGACATCAAATGTACGA 59.327 45.455 20.43 0.00 45.03 3.43
1524 5284 3.484229 GCAGCTGACATCAAATGTACGAC 60.484 47.826 20.43 0.00 45.03 4.34
1525 5285 3.679502 CAGCTGACATCAAATGTACGACA 59.320 43.478 8.42 0.00 45.03 4.35
1530 5290 3.925379 ACATCAAATGTACGACAGCTGA 58.075 40.909 23.35 0.00 42.78 4.26
1531 5291 3.679980 ACATCAAATGTACGACAGCTGAC 59.320 43.478 23.35 14.26 42.78 3.51
1534 5296 4.314961 TCAAATGTACGACAGCTGACAAT 58.685 39.130 23.35 7.97 0.00 2.71
1685 5447 2.363711 TACATGGATCCTCGCCGCAC 62.364 60.000 14.23 0.00 0.00 5.34
1766 5528 7.173218 CACAAAGGTCAGCTTAATTAACTCTCA 59.827 37.037 0.00 0.00 0.00 3.27
2035 5804 0.953471 GGTGCAGACGTATGCCAACA 60.953 55.000 30.33 10.77 45.91 3.33
2067 5836 1.667830 CGTGCACGTCCAGGATGTT 60.668 57.895 30.50 0.00 28.28 2.71
2070 5839 1.965930 GCACGTCCAGGATGTTGCA 60.966 57.895 21.94 0.00 31.28 4.08
2123 5892 2.495409 CGCATGGCCGGTACCTCTA 61.495 63.158 10.90 0.00 0.00 2.43
2124 5893 1.816863 CGCATGGCCGGTACCTCTAT 61.817 60.000 10.90 2.25 0.00 1.98
2127 5896 0.762842 ATGGCCGGTACCTCTATGCA 60.763 55.000 10.90 0.00 0.00 3.96
2274 6043 1.660355 GATCATGGAGCTCGGCGTA 59.340 57.895 6.85 0.00 0.00 4.42
2301 6070 4.379243 CCGGCGAGCCAGTGTCTT 62.379 66.667 9.30 0.00 35.37 3.01
2351 6120 0.386838 GGTATCTTACCCCGTCGTGG 59.613 60.000 0.00 0.00 43.18 4.94
2418 6197 3.744941 CATGCATGCCCGTTTGATT 57.255 47.368 14.93 0.00 0.00 2.57
2432 6211 6.245724 CCCGTTTGATTATTACAAAGTCGTC 58.754 40.000 0.00 0.00 37.80 4.20
2440 6219 3.781341 TTACAAAGTCGTCGCATTGAC 57.219 42.857 10.18 0.00 44.53 3.18
2453 6232 5.666878 CGTCGCATTGACTTCTTTATTTACG 59.333 40.000 0.00 0.00 45.87 3.18
2506 6451 8.880750 GTGTCCTTTGTTATGATCTTTACCTAC 58.119 37.037 0.00 0.00 0.00 3.18
2512 6464 7.973048 TGTTATGATCTTTACCTACCTCTGT 57.027 36.000 0.00 0.00 0.00 3.41
2521 6473 3.046283 ACCTACCTCTGTGCCATGATA 57.954 47.619 0.00 0.00 0.00 2.15
2530 6482 5.011023 CCTCTGTGCCATGATACTACATACA 59.989 44.000 0.00 0.00 0.00 2.29
2531 6483 6.295518 CCTCTGTGCCATGATACTACATACAT 60.296 42.308 0.00 0.00 0.00 2.29
2532 6484 7.093771 CCTCTGTGCCATGATACTACATACATA 60.094 40.741 0.00 0.00 0.00 2.29
2533 6485 7.602753 TCTGTGCCATGATACTACATACATAC 58.397 38.462 0.00 0.00 0.00 2.39
2534 6486 7.451566 TCTGTGCCATGATACTACATACATACT 59.548 37.037 0.00 0.00 0.00 2.12
2535 6487 8.644374 TGTGCCATGATACTACATACATACTA 57.356 34.615 0.00 0.00 0.00 1.82
2536 6488 8.520351 TGTGCCATGATACTACATACATACTAC 58.480 37.037 0.00 0.00 0.00 2.73
2537 6489 8.740906 GTGCCATGATACTACATACATACTACT 58.259 37.037 0.00 0.00 0.00 2.57
2538 6490 8.957466 TGCCATGATACTACATACATACTACTC 58.043 37.037 0.00 0.00 0.00 2.59
2539 6491 9.179909 GCCATGATACTACATACATACTACTCT 57.820 37.037 0.00 0.00 0.00 3.24
2548 6500 9.448294 CTACATACATACTACTCTTTTCGTTCC 57.552 37.037 0.00 0.00 0.00 3.62
2549 6501 7.833786 ACATACATACTACTCTTTTCGTTCCA 58.166 34.615 0.00 0.00 0.00 3.53
2550 6502 8.308931 ACATACATACTACTCTTTTCGTTCCAA 58.691 33.333 0.00 0.00 0.00 3.53
2551 6503 9.146984 CATACATACTACTCTTTTCGTTCCAAA 57.853 33.333 0.00 0.00 0.00 3.28
2552 6504 9.886132 ATACATACTACTCTTTTCGTTCCAAAT 57.114 29.630 0.00 0.00 0.00 2.32
2553 6505 8.617290 ACATACTACTCTTTTCGTTCCAAATT 57.383 30.769 0.00 0.00 0.00 1.82
2554 6506 9.715121 ACATACTACTCTTTTCGTTCCAAATTA 57.285 29.630 0.00 0.00 0.00 1.40
2555 6507 9.968743 CATACTACTCTTTTCGTTCCAAATTAC 57.031 33.333 0.00 0.00 0.00 1.89
2556 6508 9.939802 ATACTACTCTTTTCGTTCCAAATTACT 57.060 29.630 0.00 0.00 0.00 2.24
2557 6509 8.307921 ACTACTCTTTTCGTTCCAAATTACTC 57.692 34.615 0.00 0.00 0.00 2.59
2558 6510 6.224420 ACTCTTTTCGTTCCAAATTACTCG 57.776 37.500 0.00 0.00 0.00 4.18
2559 6511 5.756833 ACTCTTTTCGTTCCAAATTACTCGT 59.243 36.000 0.00 0.00 0.00 4.18
2560 6512 6.073927 ACTCTTTTCGTTCCAAATTACTCGTC 60.074 38.462 0.00 0.00 0.00 4.20
2561 6513 4.634349 TTTCGTTCCAAATTACTCGTCG 57.366 40.909 0.00 0.00 0.00 5.12
2562 6514 3.287312 TCGTTCCAAATTACTCGTCGT 57.713 42.857 0.00 0.00 0.00 4.34
2563 6515 4.418013 TCGTTCCAAATTACTCGTCGTA 57.582 40.909 0.00 0.00 0.00 3.43
2564 6516 4.793071 TCGTTCCAAATTACTCGTCGTAA 58.207 39.130 0.00 3.34 41.97 3.18
2565 6517 5.218885 TCGTTCCAAATTACTCGTCGTAAA 58.781 37.500 4.66 0.00 41.17 2.01
2566 6518 5.689514 TCGTTCCAAATTACTCGTCGTAAAA 59.310 36.000 4.66 0.00 41.17 1.52
2567 6519 6.199908 TCGTTCCAAATTACTCGTCGTAAAAA 59.800 34.615 4.66 0.00 41.17 1.94
2568 6520 7.011189 CGTTCCAAATTACTCGTCGTAAAAAT 58.989 34.615 4.66 0.00 41.17 1.82
2569 6521 7.005857 CGTTCCAAATTACTCGTCGTAAAAATG 59.994 37.037 4.66 4.77 41.17 2.32
2570 6522 6.833839 TCCAAATTACTCGTCGTAAAAATGG 58.166 36.000 15.02 15.02 41.17 3.16
2571 6523 6.649973 TCCAAATTACTCGTCGTAAAAATGGA 59.350 34.615 17.31 17.31 41.15 3.41
2572 6524 7.334921 TCCAAATTACTCGTCGTAAAAATGGAT 59.665 33.333 17.31 0.00 39.98 3.41
2573 6525 7.428183 CCAAATTACTCGTCGTAAAAATGGATG 59.572 37.037 15.55 0.00 41.17 3.51
2574 6526 7.605410 AATTACTCGTCGTAAAAATGGATGT 57.395 32.000 4.66 0.00 41.17 3.06
2575 6527 8.706492 AATTACTCGTCGTAAAAATGGATGTA 57.294 30.769 4.66 0.00 41.17 2.29
2576 6528 8.882415 ATTACTCGTCGTAAAAATGGATGTAT 57.118 30.769 4.66 0.00 41.17 2.29
2577 6529 6.823678 ACTCGTCGTAAAAATGGATGTATC 57.176 37.500 0.00 0.00 0.00 2.24
2578 6530 6.570692 ACTCGTCGTAAAAATGGATGTATCT 58.429 36.000 0.00 0.00 0.00 1.98
2579 6531 7.709947 ACTCGTCGTAAAAATGGATGTATCTA 58.290 34.615 0.00 0.00 0.00 1.98
2580 6532 7.861372 ACTCGTCGTAAAAATGGATGTATCTAG 59.139 37.037 0.00 0.00 0.00 2.43
2581 6533 7.933396 TCGTCGTAAAAATGGATGTATCTAGA 58.067 34.615 0.00 0.00 0.00 2.43
2582 6534 8.407832 TCGTCGTAAAAATGGATGTATCTAGAA 58.592 33.333 0.00 0.00 0.00 2.10
2583 6535 8.477709 CGTCGTAAAAATGGATGTATCTAGAAC 58.522 37.037 0.00 0.00 0.00 3.01
2584 6536 9.530633 GTCGTAAAAATGGATGTATCTAGAACT 57.469 33.333 0.00 0.00 0.00 3.01
2615 6567 8.341892 ACATCTAGATACATCTATTTCTGCGA 57.658 34.615 4.54 0.00 38.60 5.10
2616 6568 8.240682 ACATCTAGATACATCTATTTCTGCGAC 58.759 37.037 4.54 0.00 38.60 5.19
2617 6569 6.832804 TCTAGATACATCTATTTCTGCGACG 58.167 40.000 0.00 0.00 38.60 5.12
2618 6570 5.690997 AGATACATCTATTTCTGCGACGA 57.309 39.130 0.00 0.00 34.85 4.20
2619 6571 5.694816 AGATACATCTATTTCTGCGACGAG 58.305 41.667 0.00 0.00 34.85 4.18
2620 6572 3.784701 ACATCTATTTCTGCGACGAGT 57.215 42.857 0.00 0.00 0.00 4.18
2621 6573 4.895224 ACATCTATTTCTGCGACGAGTA 57.105 40.909 0.00 0.00 0.00 2.59
2622 6574 5.244785 ACATCTATTTCTGCGACGAGTAA 57.755 39.130 0.00 0.00 0.00 2.24
2623 6575 5.833082 ACATCTATTTCTGCGACGAGTAAT 58.167 37.500 0.00 2.18 0.00 1.89
2624 6576 6.273825 ACATCTATTTCTGCGACGAGTAATT 58.726 36.000 0.00 0.00 0.00 1.40
2625 6577 6.418226 ACATCTATTTCTGCGACGAGTAATTC 59.582 38.462 0.00 0.00 0.00 2.17
2637 6589 3.515330 GAGTAATTCGAAACGGAGGGA 57.485 47.619 0.00 0.00 0.00 4.20
2638 6590 3.445857 GAGTAATTCGAAACGGAGGGAG 58.554 50.000 0.00 0.00 0.00 4.30
2663 6615 6.240549 ACCTCCCTAAATCAATAGTGTCAG 57.759 41.667 0.00 0.00 0.00 3.51
2762 6715 2.485657 GCACCAGATCCTTTAGTAGCCC 60.486 54.545 0.00 0.00 0.00 5.19
2900 6853 2.095059 GCACCAATGCCAAGTACAGAAG 60.095 50.000 0.00 0.00 46.97 2.85
2920 6873 2.237392 AGTTGAACTCTAGTGGGATGGC 59.763 50.000 0.00 0.00 0.00 4.40
2925 6878 2.769209 ACTCTAGTGGGATGGCTTCAT 58.231 47.619 2.60 0.00 0.00 2.57
2950 6903 0.678048 AAAAGCTGACCATCCGAGCC 60.678 55.000 0.00 0.00 32.86 4.70
3015 7252 8.994170 GTGACATATTTATAAGAGGAGAAAGCC 58.006 37.037 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
107 108 1.467734 ACGCCTCACTCGTGTAAGTAG 59.532 52.381 0.00 0.00 38.88 2.57
113 114 1.157870 CCAAAACGCCTCACTCGTGT 61.158 55.000 0.00 0.00 40.36 4.49
116 117 1.901650 GAGCCAAAACGCCTCACTCG 61.902 60.000 0.00 0.00 0.00 4.18
117 118 1.578206 GGAGCCAAAACGCCTCACTC 61.578 60.000 0.00 0.00 0.00 3.51
118 119 1.600916 GGAGCCAAAACGCCTCACT 60.601 57.895 0.00 0.00 0.00 3.41
119 120 2.626780 GGGAGCCAAAACGCCTCAC 61.627 63.158 0.00 0.00 0.00 3.51
120 121 2.282180 GGGAGCCAAAACGCCTCA 60.282 61.111 0.00 0.00 0.00 3.86
121 122 2.282180 TGGGAGCCAAAACGCCTC 60.282 61.111 0.00 0.00 0.00 4.70
122 123 2.597510 GTGGGAGCCAAAACGCCT 60.598 61.111 0.00 0.00 34.18 5.52
124 125 4.700365 GCGTGGGAGCCAAAACGC 62.700 66.667 14.69 14.69 38.81 4.84
125 126 2.966309 GAGCGTGGGAGCCAAAACG 61.966 63.158 0.00 0.00 34.18 3.60
127 128 0.326595 TATGAGCGTGGGAGCCAAAA 59.673 50.000 0.00 0.00 34.18 2.44
128 129 0.546122 ATATGAGCGTGGGAGCCAAA 59.454 50.000 0.00 0.00 34.18 3.28
129 130 0.179048 CATATGAGCGTGGGAGCCAA 60.179 55.000 0.00 0.00 34.18 4.52
130 131 1.447217 CATATGAGCGTGGGAGCCA 59.553 57.895 0.00 0.00 38.01 4.75
134 135 1.146041 GGTGCATATGAGCGTGGGA 59.854 57.895 6.97 0.00 37.31 4.37
135 136 1.893808 GGGTGCATATGAGCGTGGG 60.894 63.158 6.97 0.00 37.31 4.61
136 137 2.246739 CGGGTGCATATGAGCGTGG 61.247 63.158 6.97 0.00 37.31 4.94
137 138 2.885676 GCGGGTGCATATGAGCGTG 61.886 63.158 6.97 0.00 42.15 5.34
138 139 2.588877 GCGGGTGCATATGAGCGT 60.589 61.111 6.97 0.00 42.15 5.07
140 141 2.588877 ACGCGGGTGCATATGAGC 60.589 61.111 12.47 1.51 42.97 4.26
141 142 2.302952 CGACGCGGGTGCATATGAG 61.303 63.158 10.96 0.00 42.97 2.90
143 144 1.221466 ATTCGACGCGGGTGCATATG 61.221 55.000 10.96 0.00 42.97 1.78
144 145 0.315886 TATTCGACGCGGGTGCATAT 59.684 50.000 10.96 0.69 42.97 1.78
145 146 0.102663 TTATTCGACGCGGGTGCATA 59.897 50.000 10.96 0.27 42.97 3.14
146 147 0.531974 ATTATTCGACGCGGGTGCAT 60.532 50.000 10.96 1.30 42.97 3.96
147 148 0.741574 AATTATTCGACGCGGGTGCA 60.742 50.000 10.96 0.00 42.97 4.57
148 149 0.375803 AAATTATTCGACGCGGGTGC 59.624 50.000 10.96 0.65 37.91 5.01
149 150 2.817538 AAAATTATTCGACGCGGGTG 57.182 45.000 10.96 2.59 0.00 4.61
211 212 7.500892 ACGCACCAAATTATCTATCATACCAAA 59.499 33.333 0.00 0.00 0.00 3.28
212 213 6.995686 ACGCACCAAATTATCTATCATACCAA 59.004 34.615 0.00 0.00 0.00 3.67
213 214 6.426633 CACGCACCAAATTATCTATCATACCA 59.573 38.462 0.00 0.00 0.00 3.25
214 215 6.649141 TCACGCACCAAATTATCTATCATACC 59.351 38.462 0.00 0.00 0.00 2.73
215 216 7.652300 TCACGCACCAAATTATCTATCATAC 57.348 36.000 0.00 0.00 0.00 2.39
216 217 7.877612 ACATCACGCACCAAATTATCTATCATA 59.122 33.333 0.00 0.00 0.00 2.15
217 218 6.712095 ACATCACGCACCAAATTATCTATCAT 59.288 34.615 0.00 0.00 0.00 2.45
218 219 6.054941 ACATCACGCACCAAATTATCTATCA 58.945 36.000 0.00 0.00 0.00 2.15
219 220 6.545504 ACATCACGCACCAAATTATCTATC 57.454 37.500 0.00 0.00 0.00 2.08
220 221 6.145534 CGTACATCACGCACCAAATTATCTAT 59.854 38.462 0.00 0.00 45.03 1.98
221 222 5.460748 CGTACATCACGCACCAAATTATCTA 59.539 40.000 0.00 0.00 45.03 1.98
222 223 4.270084 CGTACATCACGCACCAAATTATCT 59.730 41.667 0.00 0.00 45.03 1.98
224 225 4.530094 CGTACATCACGCACCAAATTAT 57.470 40.909 0.00 0.00 45.03 1.28
226 227 2.892373 CGTACATCACGCACCAAATT 57.108 45.000 0.00 0.00 45.03 1.82
236 237 4.678509 TGAAATTTGGAGCGTACATCAC 57.321 40.909 0.00 0.00 0.00 3.06
237 238 5.457140 GTTTGAAATTTGGAGCGTACATCA 58.543 37.500 0.00 0.00 0.00 3.07
238 239 4.857037 GGTTTGAAATTTGGAGCGTACATC 59.143 41.667 0.00 0.00 0.00 3.06
239 240 4.279671 TGGTTTGAAATTTGGAGCGTACAT 59.720 37.500 0.00 0.00 0.00 2.29
241 242 4.231718 TGGTTTGAAATTTGGAGCGTAC 57.768 40.909 0.00 0.00 0.00 3.67
242 243 5.461032 AATGGTTTGAAATTTGGAGCGTA 57.539 34.783 0.00 0.00 0.00 4.42
243 244 4.335400 AATGGTTTGAAATTTGGAGCGT 57.665 36.364 0.00 0.00 0.00 5.07
244 245 5.021120 CAAATGGTTTGAAATTTGGAGCG 57.979 39.130 0.00 0.00 43.26 5.03
249 250 7.441760 TCAGATGTCCAAATGGTTTGAAATTTG 59.558 33.333 0.00 0.00 43.26 2.32
250 251 7.507829 TCAGATGTCCAAATGGTTTGAAATTT 58.492 30.769 4.11 0.00 43.26 1.82
251 252 7.065120 TCAGATGTCCAAATGGTTTGAAATT 57.935 32.000 4.11 0.00 43.26 1.82
252 253 6.268387 ACTCAGATGTCCAAATGGTTTGAAAT 59.732 34.615 4.11 0.00 43.26 2.17
253 254 5.598005 ACTCAGATGTCCAAATGGTTTGAAA 59.402 36.000 4.11 0.00 43.26 2.69
254 255 5.139727 ACTCAGATGTCCAAATGGTTTGAA 58.860 37.500 4.11 0.00 43.26 2.69
255 256 4.728772 ACTCAGATGTCCAAATGGTTTGA 58.271 39.130 4.11 0.00 43.26 2.69
256 257 6.573664 TTACTCAGATGTCCAAATGGTTTG 57.426 37.500 0.00 0.00 40.32 2.93
260 261 7.415989 CCAAGAATTACTCAGATGTCCAAATGG 60.416 40.741 0.00 0.00 0.00 3.16
261 262 7.478322 CCAAGAATTACTCAGATGTCCAAATG 58.522 38.462 0.00 0.00 0.00 2.32
264 265 4.943705 GCCAAGAATTACTCAGATGTCCAA 59.056 41.667 0.00 0.00 0.00 3.53
265 266 4.019411 TGCCAAGAATTACTCAGATGTCCA 60.019 41.667 0.00 0.00 0.00 4.02
266 267 4.517285 TGCCAAGAATTACTCAGATGTCC 58.483 43.478 0.00 0.00 0.00 4.02
267 268 6.500684 TTTGCCAAGAATTACTCAGATGTC 57.499 37.500 0.00 0.00 0.00 3.06
268 269 6.899393 TTTTGCCAAGAATTACTCAGATGT 57.101 33.333 0.00 0.00 0.00 3.06
269 270 9.859427 TTTATTTTGCCAAGAATTACTCAGATG 57.141 29.630 0.00 0.00 0.00 2.90
319 320 8.094548 GGGTCACAACAGTATATGAATAGCATA 58.905 37.037 0.00 0.00 43.28 3.14
320 321 6.936900 GGGTCACAACAGTATATGAATAGCAT 59.063 38.462 0.00 0.00 41.08 3.79
321 322 6.126911 TGGGTCACAACAGTATATGAATAGCA 60.127 38.462 0.00 0.00 0.00 3.49
323 324 8.908786 ATTGGGTCACAACAGTATATGAATAG 57.091 34.615 0.00 0.00 42.94 1.73
324 325 9.693739 AAATTGGGTCACAACAGTATATGAATA 57.306 29.630 0.00 0.00 42.94 1.75
327 328 6.945435 ACAAATTGGGTCACAACAGTATATGA 59.055 34.615 0.00 0.00 42.94 2.15
329 330 7.175104 AGACAAATTGGGTCACAACAGTATAT 58.825 34.615 11.72 0.00 42.94 0.86
330 331 6.539173 AGACAAATTGGGTCACAACAGTATA 58.461 36.000 11.72 0.00 42.94 1.47
331 332 5.385198 AGACAAATTGGGTCACAACAGTAT 58.615 37.500 11.72 0.00 42.94 2.12
332 333 4.787551 AGACAAATTGGGTCACAACAGTA 58.212 39.130 11.72 0.00 42.94 2.74
333 334 3.631250 AGACAAATTGGGTCACAACAGT 58.369 40.909 11.72 0.00 42.94 3.55
334 335 4.654091 AAGACAAATTGGGTCACAACAG 57.346 40.909 11.72 0.00 42.94 3.16
355 356 7.362920 GGACATTTGGATAGCTCTTAGCAAAAA 60.363 37.037 0.00 0.00 45.56 1.94
356 357 6.095440 GGACATTTGGATAGCTCTTAGCAAAA 59.905 38.462 0.00 0.00 45.56 2.44
357 358 5.590259 GGACATTTGGATAGCTCTTAGCAAA 59.410 40.000 0.00 0.00 45.56 3.68
358 359 5.126067 GGACATTTGGATAGCTCTTAGCAA 58.874 41.667 0.00 0.00 45.56 3.91
359 360 4.164030 TGGACATTTGGATAGCTCTTAGCA 59.836 41.667 0.00 0.00 45.56 3.49
360 361 4.708177 TGGACATTTGGATAGCTCTTAGC 58.292 43.478 0.00 0.00 42.84 3.09
361 362 7.814264 ATTTGGACATTTGGATAGCTCTTAG 57.186 36.000 0.00 0.00 0.00 2.18
363 364 7.349598 AGTATTTGGACATTTGGATAGCTCTT 58.650 34.615 0.00 0.00 0.00 2.85
364 365 6.904626 AGTATTTGGACATTTGGATAGCTCT 58.095 36.000 0.00 0.00 0.00 4.09
365 366 6.995091 AGAGTATTTGGACATTTGGATAGCTC 59.005 38.462 0.00 0.00 0.00 4.09
366 367 6.769822 CAGAGTATTTGGACATTTGGATAGCT 59.230 38.462 0.00 0.00 0.00 3.32
367 368 6.767902 TCAGAGTATTTGGACATTTGGATAGC 59.232 38.462 0.00 0.00 0.00 2.97
368 369 8.737168 TTCAGAGTATTTGGACATTTGGATAG 57.263 34.615 0.00 0.00 0.00 2.08
369 370 9.699410 ATTTCAGAGTATTTGGACATTTGGATA 57.301 29.630 0.00 0.00 0.00 2.59
370 371 8.599624 ATTTCAGAGTATTTGGACATTTGGAT 57.400 30.769 0.00 0.00 0.00 3.41
371 372 8.421249 AATTTCAGAGTATTTGGACATTTGGA 57.579 30.769 0.00 0.00 0.00 3.53
372 373 8.928733 CAAATTTCAGAGTATTTGGACATTTGG 58.071 33.333 10.28 0.00 37.83 3.28
374 375 9.918630 CTCAAATTTCAGAGTATTTGGACATTT 57.081 29.630 15.07 0.00 40.46 2.32
375 376 8.526147 CCTCAAATTTCAGAGTATTTGGACATT 58.474 33.333 15.07 0.00 40.46 2.71
376 377 7.363268 GCCTCAAATTTCAGAGTATTTGGACAT 60.363 37.037 15.07 0.00 40.46 3.06
377 378 6.071952 GCCTCAAATTTCAGAGTATTTGGACA 60.072 38.462 15.07 2.37 40.46 4.02
378 379 6.325596 GCCTCAAATTTCAGAGTATTTGGAC 58.674 40.000 15.07 6.36 40.46 4.02
379 380 5.123820 CGCCTCAAATTTCAGAGTATTTGGA 59.876 40.000 15.07 6.33 40.46 3.53
380 381 5.335127 CGCCTCAAATTTCAGAGTATTTGG 58.665 41.667 15.07 9.12 40.46 3.28
383 384 4.009675 TGCGCCTCAAATTTCAGAGTATT 58.990 39.130 4.18 0.00 0.00 1.89
384 385 3.375299 GTGCGCCTCAAATTTCAGAGTAT 59.625 43.478 4.18 0.00 0.00 2.12
385 386 2.742053 GTGCGCCTCAAATTTCAGAGTA 59.258 45.455 4.18 0.00 0.00 2.59
386 387 1.537202 GTGCGCCTCAAATTTCAGAGT 59.463 47.619 4.18 0.00 0.00 3.24
388 389 0.881118 GGTGCGCCTCAAATTTCAGA 59.119 50.000 9.68 0.00 0.00 3.27
389 390 0.883833 AGGTGCGCCTCAAATTTCAG 59.116 50.000 14.67 0.00 42.67 3.02
401 402 0.030638 ATTTGTTGTGTGAGGTGCGC 59.969 50.000 0.00 0.00 0.00 6.09
404 405 6.655003 AGGTAGATAATTTGTTGTGTGAGGTG 59.345 38.462 0.00 0.00 0.00 4.00
405 406 6.779860 AGGTAGATAATTTGTTGTGTGAGGT 58.220 36.000 0.00 0.00 0.00 3.85
406 407 7.362056 CCAAGGTAGATAATTTGTTGTGTGAGG 60.362 40.741 0.00 0.00 0.00 3.86
408 409 7.174253 GTCCAAGGTAGATAATTTGTTGTGTGA 59.826 37.037 0.00 0.00 0.00 3.58
409 410 7.040755 TGTCCAAGGTAGATAATTTGTTGTGTG 60.041 37.037 0.00 0.00 0.00 3.82
410 411 7.001674 TGTCCAAGGTAGATAATTTGTTGTGT 58.998 34.615 0.00 0.00 0.00 3.72
411 412 7.447374 TGTCCAAGGTAGATAATTTGTTGTG 57.553 36.000 0.00 0.00 0.00 3.33
412 413 8.472007 TTTGTCCAAGGTAGATAATTTGTTGT 57.528 30.769 0.00 0.00 0.00 3.32
413 414 9.757227 TTTTTGTCCAAGGTAGATAATTTGTTG 57.243 29.630 0.00 0.00 0.00 3.33
468 469 7.953752 ACACCCGGACAAGAAATAATTAAAAA 58.046 30.769 0.73 0.00 0.00 1.94
470 471 8.102047 TCTACACCCGGACAAGAAATAATTAAA 58.898 33.333 0.73 0.00 0.00 1.52
472 473 7.185318 TCTACACCCGGACAAGAAATAATTA 57.815 36.000 0.73 0.00 0.00 1.40
474 475 5.687166 TCTACACCCGGACAAGAAATAAT 57.313 39.130 0.73 0.00 0.00 1.28
475 476 5.188163 TCATCTACACCCGGACAAGAAATAA 59.812 40.000 0.73 0.00 0.00 1.40
477 478 3.517901 TCATCTACACCCGGACAAGAAAT 59.482 43.478 0.73 0.00 0.00 2.17
478 479 2.901192 TCATCTACACCCGGACAAGAAA 59.099 45.455 0.73 0.00 0.00 2.52
479 480 2.496070 CTCATCTACACCCGGACAAGAA 59.504 50.000 0.73 0.00 0.00 2.52
480 481 2.100197 CTCATCTACACCCGGACAAGA 58.900 52.381 0.73 0.00 0.00 3.02
481 482 1.137086 CCTCATCTACACCCGGACAAG 59.863 57.143 0.73 0.00 0.00 3.16
482 483 1.191535 CCTCATCTACACCCGGACAA 58.808 55.000 0.73 0.00 0.00 3.18
483 484 1.327690 GCCTCATCTACACCCGGACA 61.328 60.000 0.73 0.00 0.00 4.02
484 485 1.442148 GCCTCATCTACACCCGGAC 59.558 63.158 0.73 0.00 0.00 4.79
485 486 1.760875 GGCCTCATCTACACCCGGA 60.761 63.158 0.73 0.00 0.00 5.14
487 488 1.443407 CTGGCCTCATCTACACCCG 59.557 63.158 3.32 0.00 0.00 5.28
488 489 1.832912 CCTGGCCTCATCTACACCC 59.167 63.158 3.32 0.00 0.00 4.61
489 490 1.147153 GCCTGGCCTCATCTACACC 59.853 63.158 7.66 0.00 0.00 4.16
490 491 0.105778 GAGCCTGGCCTCATCTACAC 59.894 60.000 16.57 0.00 0.00 2.90
493 494 0.262876 TCTGAGCCTGGCCTCATCTA 59.737 55.000 16.57 4.83 40.77 1.98
494 495 0.619832 TTCTGAGCCTGGCCTCATCT 60.620 55.000 16.57 0.00 40.77 2.90
495 496 0.473326 ATTCTGAGCCTGGCCTCATC 59.527 55.000 16.57 6.90 40.77 2.92
497 498 0.034767 CAATTCTGAGCCTGGCCTCA 60.035 55.000 16.57 16.46 39.42 3.86
498 499 0.750911 CCAATTCTGAGCCTGGCCTC 60.751 60.000 16.57 12.66 0.00 4.70
500 501 0.106318 ATCCAATTCTGAGCCTGGCC 60.106 55.000 16.57 7.66 0.00 5.36
501 502 2.645838 TATCCAATTCTGAGCCTGGC 57.354 50.000 11.65 11.65 0.00 4.85
503 504 3.188048 GCGAATATCCAATTCTGAGCCTG 59.812 47.826 0.00 0.00 0.00 4.85
504 505 3.181451 TGCGAATATCCAATTCTGAGCCT 60.181 43.478 0.00 0.00 0.00 4.58
505 506 3.058639 GTGCGAATATCCAATTCTGAGCC 60.059 47.826 0.00 0.00 0.00 4.70
506 507 3.812053 AGTGCGAATATCCAATTCTGAGC 59.188 43.478 0.00 0.00 0.00 4.26
507 508 5.998454 AAGTGCGAATATCCAATTCTGAG 57.002 39.130 0.00 0.00 0.00 3.35
509 510 6.422223 GTGTAAGTGCGAATATCCAATTCTG 58.578 40.000 0.00 0.00 0.00 3.02
510 511 5.234329 CGTGTAAGTGCGAATATCCAATTCT 59.766 40.000 0.00 0.00 0.00 2.40
511 512 5.432157 CGTGTAAGTGCGAATATCCAATTC 58.568 41.667 0.00 0.00 0.00 2.17
513 514 3.247648 GCGTGTAAGTGCGAATATCCAAT 59.752 43.478 0.00 0.00 0.00 3.16
514 515 2.605818 GCGTGTAAGTGCGAATATCCAA 59.394 45.455 0.00 0.00 0.00 3.53
515 516 2.198406 GCGTGTAAGTGCGAATATCCA 58.802 47.619 0.00 0.00 0.00 3.41
516 517 2.924432 GCGTGTAAGTGCGAATATCC 57.076 50.000 0.00 0.00 0.00 2.59
524 525 2.154427 ACGAAAGCGCGTGTAAGTGC 62.154 55.000 8.43 0.00 43.79 4.40
525 526 0.231279 AACGAAAGCGCGTGTAAGTG 59.769 50.000 8.43 0.00 44.86 3.16
552 553 6.479001 GTGTACAGCAGTTTCCACGAATATAT 59.521 38.462 0.00 0.00 0.00 0.86
559 560 1.865865 AGTGTACAGCAGTTTCCACG 58.134 50.000 0.00 0.00 0.00 4.94
614 615 5.503689 TCGTGTGTTGATTGTACAATACG 57.496 39.130 23.69 23.69 42.08 3.06
617 618 5.445407 GCGTATCGTGTGTTGATTGTACAAT 60.445 40.000 20.93 20.93 32.36 2.71
634 635 0.800683 TCTTGCCTTCACGCGTATCG 60.801 55.000 13.44 0.00 45.38 2.92
655 656 8.188139 GCTCTATACTCTATAGAACAAGCATCC 58.812 40.741 3.57 0.00 44.65 3.51
724 726 1.072391 TGTAACGTTGTGGCTATGCG 58.928 50.000 11.99 0.00 0.00 4.73
728 730 3.068560 GTCCAATGTAACGTTGTGGCTA 58.931 45.455 11.99 0.00 0.00 3.93
729 731 1.877443 GTCCAATGTAACGTTGTGGCT 59.123 47.619 11.99 0.00 0.00 4.75
738 740 4.390297 GTCTGCTTCTCTGTCCAATGTAAC 59.610 45.833 0.00 0.00 0.00 2.50
767 769 6.052360 TGTTTCCTTTTTAATTTGGGTCAGC 58.948 36.000 0.00 0.00 0.00 4.26
768 770 8.499403 TTTGTTTCCTTTTTAATTTGGGTCAG 57.501 30.769 0.00 0.00 0.00 3.51
785 787 3.513515 TCCCACTTGCCATATTTGTTTCC 59.486 43.478 0.00 0.00 0.00 3.13
800 802 1.063717 CCCACTTGCCATATCCCACTT 60.064 52.381 0.00 0.00 0.00 3.16
801 803 0.552848 CCCACTTGCCATATCCCACT 59.447 55.000 0.00 0.00 0.00 4.00
802 804 0.550914 TCCCACTTGCCATATCCCAC 59.449 55.000 0.00 0.00 0.00 4.61
803 805 1.145531 CATCCCACTTGCCATATCCCA 59.854 52.381 0.00 0.00 0.00 4.37
806 808 2.233271 CCACATCCCACTTGCCATATC 58.767 52.381 0.00 0.00 0.00 1.63
808 810 0.395586 GCCACATCCCACTTGCCATA 60.396 55.000 0.00 0.00 0.00 2.74
812 814 2.998279 GCAGCCACATCCCACTTGC 61.998 63.158 0.00 0.00 0.00 4.01
963 4560 2.975732 TGCTGAACTAGGAGATGCAG 57.024 50.000 0.00 0.00 0.00 4.41
1137 4748 1.303317 CCTGCGCTTACCAGGGTTT 60.303 57.895 9.73 0.00 44.87 3.27
1163 4779 6.039717 TCCAATGGAGATTAGCAAATGTTAGC 59.960 38.462 0.00 0.00 0.00 3.09
1195 4812 6.893583 AGGAAGTACATGAAATATCACTGCT 58.106 36.000 0.00 0.00 38.69 4.24
1196 4813 6.989169 AGAGGAAGTACATGAAATATCACTGC 59.011 38.462 0.00 0.00 38.69 4.40
1221 4841 5.853936 AGCAGCGTCAGTTAATATGGATTA 58.146 37.500 0.00 0.00 0.00 1.75
1234 4854 2.668457 CCTTGTACTAAAGCAGCGTCAG 59.332 50.000 0.00 0.00 0.00 3.51
1344 5089 4.371417 AGGGTCAGCCGGTCCGTA 62.371 66.667 11.06 0.00 34.97 4.02
1350 5095 4.148825 CGGAAGAGGGTCAGCCGG 62.149 72.222 0.00 0.00 38.40 6.13
1451 5196 5.539955 AGAACTAAGTAAAGTACCGGGTCAA 59.460 40.000 6.32 0.00 0.00 3.18
1482 5227 3.704566 TGCTAGTACTCCAATGTGGGTAG 59.295 47.826 0.00 0.00 38.32 3.18
1504 5264 3.925379 TGTCGTACATTTGATGTCAGCT 58.075 40.909 0.00 0.00 43.67 4.24
1523 5283 5.711506 TCATGAATAAACCATTGTCAGCTGT 59.288 36.000 14.67 0.00 0.00 4.40
1524 5284 6.198650 TCATGAATAAACCATTGTCAGCTG 57.801 37.500 7.63 7.63 0.00 4.24
1525 5285 6.839124 TTCATGAATAAACCATTGTCAGCT 57.161 33.333 3.38 0.00 0.00 4.24
1530 5290 6.594937 GCACCAATTCATGAATAAACCATTGT 59.405 34.615 21.00 4.17 0.00 2.71
1531 5291 6.594547 TGCACCAATTCATGAATAAACCATTG 59.405 34.615 21.00 13.74 0.00 2.82
1534 5296 5.337410 CCTGCACCAATTCATGAATAAACCA 60.337 40.000 21.00 13.04 0.00 3.67
1624 5386 2.292794 ATTACGACACGCCGGATGCT 62.293 55.000 5.05 0.00 38.05 3.79
1638 5400 2.230014 CCGATCGACGACGTCATTACG 61.230 57.143 26.26 22.10 45.91 3.18
1660 5422 0.597637 CGAGGATCCATGTACACGGC 60.598 60.000 15.82 0.00 0.00 5.68
1696 5458 0.670546 CAACATGTCTCGTCGGCCTT 60.671 55.000 0.00 0.00 0.00 4.35
1766 5528 3.257375 TGGTGCTTCTAACATACACGAGT 59.743 43.478 0.00 0.00 32.00 4.18
2007 5776 2.581354 GTCTGCACCGAGCCATCT 59.419 61.111 0.00 0.00 44.83 2.90
2010 5779 2.348104 ATACGTCTGCACCGAGCCA 61.348 57.895 7.94 0.00 44.83 4.75
2158 5927 2.552031 GAAGAACTTGGCGAGGATACC 58.448 52.381 6.71 0.00 37.17 2.73
2301 6070 1.007038 GCTGGTGACCGTGTCGTAA 60.007 57.895 0.00 0.00 34.95 3.18
2334 6103 1.727511 CGCCACGACGGGGTAAGATA 61.728 60.000 19.25 0.00 42.81 1.98
2349 6118 0.104855 GTCAGGACATATCAGCGCCA 59.895 55.000 2.29 0.00 0.00 5.69
2351 6120 1.594862 GTTGTCAGGACATATCAGCGC 59.405 52.381 0.00 0.00 41.52 5.92
2418 6197 5.444586 GTCAATGCGACGACTTTGTAATA 57.555 39.130 0.00 0.00 34.19 0.98
2432 6211 6.762108 AGACGTAAATAAAGAAGTCAATGCG 58.238 36.000 0.00 0.00 0.00 4.73
2512 6464 8.879427 AGTAGTATGTATGTAGTATCATGGCA 57.121 34.615 0.00 0.00 0.00 4.92
2530 6482 9.939802 AGTAATTTGGAACGAAAAGAGTAGTAT 57.060 29.630 0.00 0.00 0.00 2.12
2531 6483 9.415544 GAGTAATTTGGAACGAAAAGAGTAGTA 57.584 33.333 0.00 0.00 0.00 1.82
2532 6484 7.115947 CGAGTAATTTGGAACGAAAAGAGTAGT 59.884 37.037 0.00 0.00 0.00 2.73
2533 6485 7.115947 ACGAGTAATTTGGAACGAAAAGAGTAG 59.884 37.037 0.00 0.00 0.00 2.57
2534 6486 6.925165 ACGAGTAATTTGGAACGAAAAGAGTA 59.075 34.615 0.00 0.00 0.00 2.59
2535 6487 5.756833 ACGAGTAATTTGGAACGAAAAGAGT 59.243 36.000 0.00 0.00 0.00 3.24
2536 6488 6.224420 ACGAGTAATTTGGAACGAAAAGAG 57.776 37.500 0.00 0.00 0.00 2.85
2537 6489 5.107760 CGACGAGTAATTTGGAACGAAAAGA 60.108 40.000 0.00 0.00 0.00 2.52
2538 6490 5.070862 CGACGAGTAATTTGGAACGAAAAG 58.929 41.667 0.00 0.00 0.00 2.27
2539 6491 4.507388 ACGACGAGTAATTTGGAACGAAAA 59.493 37.500 0.00 0.00 0.00 2.29
2540 6492 4.050553 ACGACGAGTAATTTGGAACGAAA 58.949 39.130 0.00 0.00 0.00 3.46
2541 6493 3.641648 ACGACGAGTAATTTGGAACGAA 58.358 40.909 0.00 0.00 0.00 3.85
2542 6494 3.287312 ACGACGAGTAATTTGGAACGA 57.713 42.857 0.00 0.00 0.00 3.85
2543 6495 5.499268 TTTACGACGAGTAATTTGGAACG 57.501 39.130 0.00 0.00 44.03 3.95
2544 6496 7.269724 CCATTTTTACGACGAGTAATTTGGAAC 59.730 37.037 0.00 0.00 44.03 3.62
2545 6497 7.172875 TCCATTTTTACGACGAGTAATTTGGAA 59.827 33.333 19.11 7.90 44.03 3.53
2546 6498 6.649973 TCCATTTTTACGACGAGTAATTTGGA 59.350 34.615 0.00 18.37 44.03 3.53
2547 6499 6.833839 TCCATTTTTACGACGAGTAATTTGG 58.166 36.000 0.00 16.14 44.03 3.28
2548 6500 7.960738 ACATCCATTTTTACGACGAGTAATTTG 59.039 33.333 0.00 7.18 44.03 2.32
2549 6501 8.036273 ACATCCATTTTTACGACGAGTAATTT 57.964 30.769 0.00 0.00 44.03 1.82
2550 6502 7.605410 ACATCCATTTTTACGACGAGTAATT 57.395 32.000 0.00 0.00 44.03 1.40
2551 6503 8.882415 ATACATCCATTTTTACGACGAGTAAT 57.118 30.769 0.00 0.00 44.03 1.89
2552 6504 8.192774 AGATACATCCATTTTTACGACGAGTAA 58.807 33.333 0.00 0.00 43.05 2.24
2553 6505 7.709947 AGATACATCCATTTTTACGACGAGTA 58.290 34.615 0.00 0.00 0.00 2.59
2554 6506 6.570692 AGATACATCCATTTTTACGACGAGT 58.429 36.000 0.00 0.00 0.00 4.18
2555 6507 8.074370 TCTAGATACATCCATTTTTACGACGAG 58.926 37.037 0.00 0.00 0.00 4.18
2556 6508 7.933396 TCTAGATACATCCATTTTTACGACGA 58.067 34.615 0.00 0.00 0.00 4.20
2557 6509 8.477709 GTTCTAGATACATCCATTTTTACGACG 58.522 37.037 0.00 0.00 0.00 5.12
2558 6510 9.530633 AGTTCTAGATACATCCATTTTTACGAC 57.469 33.333 0.00 0.00 0.00 4.34
2589 6541 9.449719 TCGCAGAAATAGATGTATCTAGATGTA 57.550 33.333 15.79 4.44 42.20 2.29
2590 6542 8.240682 GTCGCAGAAATAGATGTATCTAGATGT 58.759 37.037 15.79 1.25 39.84 3.06
2591 6543 7.427895 CGTCGCAGAAATAGATGTATCTAGATG 59.572 40.741 15.79 0.00 39.84 2.90
2592 6544 7.334671 TCGTCGCAGAAATAGATGTATCTAGAT 59.665 37.037 10.73 10.73 39.84 1.98
2593 6545 6.649557 TCGTCGCAGAAATAGATGTATCTAGA 59.350 38.462 7.57 0.00 39.84 2.43
2594 6546 6.832804 TCGTCGCAGAAATAGATGTATCTAG 58.167 40.000 7.57 0.00 39.84 2.43
2595 6547 6.427242 ACTCGTCGCAGAAATAGATGTATCTA 59.573 38.462 4.22 4.22 40.45 1.98
2596 6548 5.239744 ACTCGTCGCAGAAATAGATGTATCT 59.760 40.000 0.00 0.00 39.69 1.98
2597 6549 5.453648 ACTCGTCGCAGAAATAGATGTATC 58.546 41.667 0.00 0.00 39.69 2.24
2598 6550 5.440234 ACTCGTCGCAGAAATAGATGTAT 57.560 39.130 0.00 0.00 39.69 2.29
2599 6551 4.895224 ACTCGTCGCAGAAATAGATGTA 57.105 40.909 0.00 0.00 39.69 2.29
2600 6552 3.784701 ACTCGTCGCAGAAATAGATGT 57.215 42.857 0.00 0.00 39.69 3.06
2601 6553 6.397998 CGAATTACTCGTCGCAGAAATAGATG 60.398 42.308 0.00 0.00 42.89 2.90
2602 6554 5.625721 CGAATTACTCGTCGCAGAAATAGAT 59.374 40.000 0.00 0.00 42.89 1.98
2603 6555 4.968181 CGAATTACTCGTCGCAGAAATAGA 59.032 41.667 0.00 0.00 42.89 1.98
2604 6556 5.225619 CGAATTACTCGTCGCAGAAATAG 57.774 43.478 0.00 0.00 42.89 1.73
2617 6569 3.119209 ACTCCCTCCGTTTCGAATTACTC 60.119 47.826 0.00 0.00 0.00 2.59
2618 6570 2.830321 ACTCCCTCCGTTTCGAATTACT 59.170 45.455 0.00 0.00 0.00 2.24
2619 6571 3.242549 ACTCCCTCCGTTTCGAATTAC 57.757 47.619 0.00 0.00 0.00 1.89
2620 6572 3.131046 GGTACTCCCTCCGTTTCGAATTA 59.869 47.826 0.00 0.00 0.00 1.40
2621 6573 2.093816 GGTACTCCCTCCGTTTCGAATT 60.094 50.000 0.00 0.00 0.00 2.17
2622 6574 1.479730 GGTACTCCCTCCGTTTCGAAT 59.520 52.381 0.00 0.00 0.00 3.34
2623 6575 0.890683 GGTACTCCCTCCGTTTCGAA 59.109 55.000 0.00 0.00 0.00 3.71
2624 6576 0.038744 AGGTACTCCCTCCGTTTCGA 59.961 55.000 0.00 0.00 40.71 3.71
2625 6577 2.576298 AGGTACTCCCTCCGTTTCG 58.424 57.895 0.00 0.00 40.71 3.46
2638 6590 7.069578 TCTGACACTATTGATTTAGGGAGGTAC 59.930 40.741 0.00 0.00 0.00 3.34
2777 6730 3.431673 TGGGCACATATGTCTGAACAA 57.568 42.857 5.07 0.00 39.30 2.83
2894 6847 4.223953 TCCCACTAGAGTTCAACTTCTGT 58.776 43.478 0.00 0.00 0.00 3.41
2895 6848 4.873746 TCCCACTAGAGTTCAACTTCTG 57.126 45.455 0.00 0.00 0.00 3.02
2900 6853 2.237392 AGCCATCCCACTAGAGTTCAAC 59.763 50.000 0.00 0.00 0.00 3.18
2945 6898 9.436957 AATACCATAATAAACATTCTAGGCTCG 57.563 33.333 0.00 0.00 0.00 5.03
2991 7228 9.561069 TTGGCTTTCTCCTCTTATAAATATGTC 57.439 33.333 0.00 0.00 0.00 3.06
3015 7252 7.829725 TGAATTTCCATTGTATCTCACCTTTG 58.170 34.615 0.00 0.00 0.00 2.77
3019 7256 6.152661 TGGTTGAATTTCCATTGTATCTCACC 59.847 38.462 0.00 0.00 0.00 4.02
3231 7469 6.954684 TCAACTAGTCAAGGGAACTCTATTCT 59.045 38.462 0.00 0.00 42.68 2.40
3310 7548 5.250543 TCATGGAAGACTTGTTGGATCCTTA 59.749 40.000 14.23 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.