Multiple sequence alignment - TraesCS5A01G061100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G061100 chr5A 100.000 6340 0 0 1 6340 64754970 64761309 0.000000e+00 11708.0
1 TraesCS5A01G061100 chr5D 94.845 2541 113 14 2877 5411 72213208 72215736 0.000000e+00 3951.0
2 TraesCS5A01G061100 chr5D 95.845 1468 50 7 1401 2863 72211763 72213224 0.000000e+00 2362.0
3 TraesCS5A01G061100 chr5D 93.673 1138 43 12 164 1293 72210455 72211571 0.000000e+00 1676.0
4 TraesCS5A01G061100 chr5D 91.747 727 32 9 5417 6133 72221920 72222628 0.000000e+00 985.0
5 TraesCS5A01G061100 chr5D 90.647 278 21 4 409 682 486900286 486900010 1.300000e-96 364.0
6 TraesCS5A01G061100 chr5D 93.651 189 9 2 1230 1418 72211562 72211747 4.840000e-71 279.0
7 TraesCS5A01G061100 chr5D 91.736 121 9 1 1 120 72208825 72208945 3.930000e-37 167.0
8 TraesCS5A01G061100 chr5D 91.011 89 2 5 723 806 486900007 486899920 1.440000e-21 115.0
9 TraesCS5A01G061100 chr5D 94.595 74 1 1 6270 6340 72222622 72222695 1.870000e-20 111.0
10 TraesCS5A01G061100 chr5D 90.000 90 4 4 722 806 548629675 548629586 1.870000e-20 111.0
11 TraesCS5A01G061100 chr5D 89.888 89 4 4 723 806 114627567 114627479 6.720000e-20 110.0
12 TraesCS5A01G061100 chr5D 88.889 72 5 1 1 69 12992498 12992427 1.130000e-12 86.1
13 TraesCS5A01G061100 chr5B 94.243 2536 109 17 346 2863 82242273 82239757 0.000000e+00 3840.0
14 TraesCS5A01G061100 chr5B 93.942 2377 116 15 2877 5236 82239773 82237408 0.000000e+00 3567.0
15 TraesCS5A01G061100 chr5B 90.938 640 27 11 5550 6177 82234660 82234040 0.000000e+00 832.0
16 TraesCS5A01G061100 chr5B 92.537 335 16 7 5228 5554 82236448 82236115 7.440000e-129 472.0
17 TraesCS5A01G061100 chr5B 90.378 291 21 4 395 682 692786275 692785989 6.000000e-100 375.0
18 TraesCS5A01G061100 chr5B 90.909 198 14 1 156 349 82242807 82242610 4.870000e-66 263.0
19 TraesCS5A01G061100 chr5B 90.155 193 12 4 5369 5554 82235010 82234818 1.770000e-60 244.0
20 TraesCS5A01G061100 chr5B 95.105 143 5 1 5550 5690 82235676 82235534 2.300000e-54 224.0
21 TraesCS5A01G061100 chr5B 79.532 171 27 7 5423 5589 637466158 637465992 1.440000e-21 115.0
22 TraesCS5A01G061100 chr5B 95.714 70 3 0 6234 6303 82215200 82215131 5.190000e-21 113.0
23 TraesCS5A01G061100 chr5B 89.286 56 6 0 350 405 551518203 551518148 3.170000e-08 71.3
24 TraesCS5A01G061100 chr4B 85.200 2000 172 54 3207 5105 73482478 73484454 0.000000e+00 1940.0
25 TraesCS5A01G061100 chr4B 81.984 1704 182 63 1520 3183 73480675 73482293 0.000000e+00 1330.0
26 TraesCS5A01G061100 chr4B 91.729 133 11 0 1000 1132 73480233 73480365 1.090000e-42 185.0
27 TraesCS5A01G061100 chr4B 90.000 90 8 1 5252 5341 73484688 73484776 1.440000e-21 115.0
28 TraesCS5A01G061100 chr3A 79.621 1634 216 66 3463 5010 165337009 165338611 0.000000e+00 1064.0
29 TraesCS5A01G061100 chr3A 83.811 803 96 25 1780 2563 165334840 165335627 0.000000e+00 732.0
30 TraesCS5A01G061100 chr3A 81.350 311 26 16 997 1285 165334410 165334710 2.300000e-54 224.0
31 TraesCS5A01G061100 chr3A 87.432 183 19 4 2688 2867 165336088 165336269 2.320000e-49 207.0
32 TraesCS5A01G061100 chr3A 85.417 192 21 4 195 382 113918019 113917831 6.490000e-45 193.0
33 TraesCS5A01G061100 chr3B 79.405 1646 215 78 3463 5012 214555919 214557536 0.000000e+00 1048.0
34 TraesCS5A01G061100 chr3B 82.288 813 97 22 1782 2563 214553743 214554539 0.000000e+00 660.0
35 TraesCS5A01G061100 chr3B 86.339 183 20 5 2688 2867 214554999 214555179 1.800000e-45 195.0
36 TraesCS5A01G061100 chr3D 79.241 1633 196 85 3469 5012 147825694 147824116 0.000000e+00 1005.0
37 TraesCS5A01G061100 chr3D 83.437 803 99 25 1780 2563 147827850 147827063 0.000000e+00 715.0
38 TraesCS5A01G061100 chr3D 79.853 407 65 14 2123 2517 137470814 137470413 1.350000e-71 281.0
39 TraesCS5A01G061100 chr3D 93.377 151 9 1 997 1147 147828326 147828177 8.270000e-54 222.0
40 TraesCS5A01G061100 chr3D 87.222 180 19 4 2691 2867 147826610 147826432 1.080000e-47 202.0
41 TraesCS5A01G061100 chr6B 86.946 406 36 12 409 806 656034038 656033642 2.100000e-119 440.0
42 TraesCS5A01G061100 chr6B 80.625 160 28 3 5423 5581 624612368 624612525 3.100000e-23 121.0
43 TraesCS5A01G061100 chr6B 100.000 30 0 0 5745 5774 696012570 696012541 8.880000e-04 56.5
44 TraesCS5A01G061100 chr1D 75.568 925 172 38 4082 4974 31332977 31332075 2.130000e-109 407.0
45 TraesCS5A01G061100 chr1D 78.222 675 97 31 1780 2423 105969142 105968487 2.770000e-103 387.0
46 TraesCS5A01G061100 chr1D 77.794 671 102 27 1780 2423 105353167 105352517 2.790000e-98 370.0
47 TraesCS5A01G061100 chr1D 91.209 91 1 6 722 806 110519624 110519535 4.020000e-22 117.0
48 TraesCS5A01G061100 chr1D 90.000 50 5 0 681 730 369155479 369155430 1.480000e-06 65.8
49 TraesCS5A01G061100 chr1D 88.889 45 5 0 681 725 22882253 22882297 8.880000e-04 56.5
50 TraesCS5A01G061100 chr6A 92.391 276 18 2 409 682 579956096 579955822 2.140000e-104 390.0
51 TraesCS5A01G061100 chr6A 86.034 179 19 5 237 411 594377454 594377278 3.020000e-43 187.0
52 TraesCS5A01G061100 chr1B 79.478 575 96 16 2273 2839 161541530 161542090 7.710000e-104 388.0
53 TraesCS5A01G061100 chr1B 79.304 575 95 17 2273 2837 161498234 161498794 1.290000e-101 381.0
54 TraesCS5A01G061100 chr1B 91.606 274 15 4 409 679 551720957 551721225 7.760000e-99 372.0
55 TraesCS5A01G061100 chr1B 89.531 277 24 3 411 682 546686255 546685979 4.710000e-91 346.0
56 TraesCS5A01G061100 chr1B 91.398 93 3 4 718 805 167998514 167998422 8.630000e-24 122.0
57 TraesCS5A01G061100 chr6D 90.909 275 24 1 409 682 433768998 433768724 1.000000e-97 368.0
58 TraesCS5A01G061100 chr7B 87.195 164 18 2 5425 5587 670555050 670555211 3.900000e-42 183.0
59 TraesCS5A01G061100 chr7B 86.585 164 19 2 5425 5587 670723434 670723595 1.820000e-40 178.0
60 TraesCS5A01G061100 chr7B 85.976 164 19 3 5425 5587 670494174 670494334 8.450000e-39 172.0
61 TraesCS5A01G061100 chr7B 85.366 164 20 3 5425 5587 670475918 670476078 3.930000e-37 167.0
62 TraesCS5A01G061100 chr1A 83.582 201 26 6 4081 4280 30636348 30636154 1.400000e-41 182.0
63 TraesCS5A01G061100 chr1A 92.045 88 2 4 723 805 115368131 115368044 1.120000e-22 119.0
64 TraesCS5A01G061100 chr2B 88.462 130 11 1 293 418 178796578 178796449 3.060000e-33 154.0
65 TraesCS5A01G061100 chr2B 100.000 29 0 0 697 725 26294516 26294544 3.000000e-03 54.7
66 TraesCS5A01G061100 chr2D 86.154 130 14 1 293 418 125501464 125501335 3.080000e-28 137.0
67 TraesCS5A01G061100 chr2D 92.135 89 2 4 723 806 547676522 547676610 3.100000e-23 121.0
68 TraesCS5A01G061100 chr2A 93.333 90 1 4 722 806 691230696 691230607 1.860000e-25 128.0
69 TraesCS5A01G061100 chr4A 82.558 86 13 2 325 409 35633525 35633441 2.450000e-09 75.0
70 TraesCS5A01G061100 chr7D 81.522 92 14 3 322 411 495104570 495104660 8.820000e-09 73.1
71 TraesCS5A01G061100 chr7A 80.851 94 13 5 322 413 712252725 712252815 1.140000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G061100 chr5A 64754970 64761309 6339 False 11708.000000 11708 100.000000 1 6340 1 chr5A.!!$F1 6339
1 TraesCS5A01G061100 chr5D 72208825 72215736 6911 False 1687.000000 3951 93.950000 1 5411 5 chr5D.!!$F1 5410
2 TraesCS5A01G061100 chr5D 72221920 72222695 775 False 548.000000 985 93.171000 5417 6340 2 chr5D.!!$F2 923
3 TraesCS5A01G061100 chr5B 82234040 82242807 8767 True 1348.857143 3840 92.547000 156 6177 7 chr5B.!!$R5 6021
4 TraesCS5A01G061100 chr4B 73480233 73484776 4543 False 892.500000 1940 87.228250 1000 5341 4 chr4B.!!$F1 4341
5 TraesCS5A01G061100 chr3A 165334410 165338611 4201 False 556.750000 1064 83.053500 997 5010 4 chr3A.!!$F1 4013
6 TraesCS5A01G061100 chr3B 214553743 214557536 3793 False 634.333333 1048 82.677333 1782 5012 3 chr3B.!!$F1 3230
7 TraesCS5A01G061100 chr3D 147824116 147828326 4210 True 536.000000 1005 85.819250 997 5012 4 chr3D.!!$R2 4015
8 TraesCS5A01G061100 chr1D 31332075 31332977 902 True 407.000000 407 75.568000 4082 4974 1 chr1D.!!$R1 892
9 TraesCS5A01G061100 chr1D 105968487 105969142 655 True 387.000000 387 78.222000 1780 2423 1 chr1D.!!$R3 643
10 TraesCS5A01G061100 chr1D 105352517 105353167 650 True 370.000000 370 77.794000 1780 2423 1 chr1D.!!$R2 643
11 TraesCS5A01G061100 chr1B 161541530 161542090 560 False 388.000000 388 79.478000 2273 2839 1 chr1B.!!$F2 566
12 TraesCS5A01G061100 chr1B 161498234 161498794 560 False 381.000000 381 79.304000 2273 2837 1 chr1B.!!$F1 564

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
151 153 0.103755 GAGGATCCGACGGGGTAAAC 59.896 60.0 15.25 0.0 37.00 2.01 F
340 1812 0.263765 TTAGGGGATCGGCTAGGTGT 59.736 55.0 0.00 0.0 0.00 4.16 F
1525 3509 0.260816 ATGTCATCATGCTTGGCCCT 59.739 50.0 0.00 0.0 32.51 5.19 F
2686 4782 1.084289 CCGGTTGCTTGGCTACTTAC 58.916 55.0 0.00 0.0 34.94 2.34 F
3573 6282 0.389391 ACGACATCCATAGGCTTCCG 59.611 55.0 0.00 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1507 3491 0.040058 AAGGGCCAAGCATGATGACA 59.960 50.000 6.18 0.0 0.00 3.58 R
1651 3635 0.320374 AATTTCTGTCTCCCGTGCGA 59.680 50.000 0.00 0.0 0.00 5.10 R
3487 6196 2.232452 GACACAGGTAGTCTGATGCTGT 59.768 50.000 0.00 0.0 46.18 4.40 R
4598 7410 1.133482 AGTTAAACCCCTTGCAGCAGT 60.133 47.619 0.00 0.0 0.00 4.40 R
5503 10720 1.193874 GTCGTTTCGTTTACAGGCAGG 59.806 52.381 0.00 0.0 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.821894 GCAAATGTTTACCAATTGTAGTTTGAA 58.178 29.630 4.43 0.00 36.51 2.69
81 83 5.193099 ACATGTTAGGGCATTTCTAACCT 57.807 39.130 10.32 0.00 43.38 3.50
84 86 7.354312 ACATGTTAGGGCATTTCTAACCTATT 58.646 34.615 10.32 0.00 43.38 1.73
94 96 9.000486 GGCATTTCTAACCTATTCCTTGTATAC 58.000 37.037 0.00 0.00 0.00 1.47
98 100 9.590451 TTTCTAACCTATTCCTTGTATACAACG 57.410 33.333 14.35 10.78 0.00 4.10
131 133 5.163513 ACGGAGTAAACCTTGTATACAACG 58.836 41.667 14.35 14.29 41.94 4.10
132 134 4.563976 CGGAGTAAACCTTGTATACAACGG 59.436 45.833 22.31 22.31 33.39 4.44
133 135 5.622007 CGGAGTAAACCTTGTATACAACGGA 60.622 44.000 27.08 12.22 32.34 4.69
134 136 5.809051 GGAGTAAACCTTGTATACAACGGAG 59.191 44.000 27.08 14.90 32.34 4.63
135 137 5.727434 AGTAAACCTTGTATACAACGGAGG 58.273 41.667 27.08 22.45 39.03 4.30
136 138 4.895668 AAACCTTGTATACAACGGAGGA 57.104 40.909 27.08 6.17 37.43 3.71
137 139 5.431179 AAACCTTGTATACAACGGAGGAT 57.569 39.130 27.08 15.69 37.43 3.24
149 151 4.265206 GAGGATCCGACGGGGTAA 57.735 61.111 15.25 0.00 37.00 2.85
150 152 2.508361 GAGGATCCGACGGGGTAAA 58.492 57.895 15.25 0.00 37.00 2.01
151 153 0.103755 GAGGATCCGACGGGGTAAAC 59.896 60.000 15.25 0.00 37.00 2.01
152 154 1.144716 GGATCCGACGGGGTAAACC 59.855 63.158 15.25 0.00 37.00 3.27
153 155 1.332889 GGATCCGACGGGGTAAACCT 61.333 60.000 15.25 0.00 40.03 3.50
154 156 0.538584 GATCCGACGGGGTAAACCTT 59.461 55.000 15.25 0.00 40.03 3.50
162 1630 3.238597 ACGGGGTAAACCTTGTACTACA 58.761 45.455 0.00 0.00 40.03 2.74
273 1741 2.345760 GCCCGTCTCGGTGGAGTAA 61.346 63.158 7.40 0.00 46.80 2.24
340 1812 0.263765 TTAGGGGATCGGCTAGGTGT 59.736 55.000 0.00 0.00 0.00 4.16
405 2217 4.286291 GGATAGGGGATCGGTTAGAAATGT 59.714 45.833 0.00 0.00 35.12 2.71
501 2313 6.205658 GTCTTGACCTGAAATCAAAGCTTAGT 59.794 38.462 0.00 0.00 35.70 2.24
546 2358 4.333926 GCAGGAGCTTTGTCTTGGTTATAG 59.666 45.833 0.00 0.00 37.91 1.31
551 2363 4.010349 GCTTTGTCTTGGTTATAGTGGCT 58.990 43.478 0.00 0.00 0.00 4.75
638 2450 9.787435 GTTTATGATTGGGAATATAGTGGTACA 57.213 33.333 0.00 0.00 0.00 2.90
645 2457 5.221303 TGGGAATATAGTGGTACAGTTACGC 60.221 44.000 0.00 0.00 40.27 4.42
659 2471 5.337219 CAGTTACGCTGTGTTGTTGATTA 57.663 39.130 0.00 0.00 40.27 1.75
660 2472 5.743467 CAGTTACGCTGTGTTGTTGATTAA 58.257 37.500 0.00 0.00 40.27 1.40
661 2473 5.619607 CAGTTACGCTGTGTTGTTGATTAAC 59.380 40.000 0.00 0.00 40.27 2.01
663 2475 4.209452 ACGCTGTGTTGTTGATTAACAG 57.791 40.909 3.07 0.00 46.63 3.16
664 2476 3.625764 ACGCTGTGTTGTTGATTAACAGT 59.374 39.130 3.07 0.00 46.63 3.55
665 2477 4.211389 CGCTGTGTTGTTGATTAACAGTC 58.789 43.478 3.07 2.64 46.63 3.51
707 2521 7.642082 ACCTCTGTAACTGAATATAAGACGT 57.358 36.000 0.00 0.00 0.00 4.34
790 2605 3.404899 GGTTCCACCTTTCGTGTTATGA 58.595 45.455 0.00 0.00 41.26 2.15
791 2606 4.007659 GGTTCCACCTTTCGTGTTATGAT 58.992 43.478 0.00 0.00 41.26 2.45
793 2608 5.644636 GGTTCCACCTTTCGTGTTATGATAA 59.355 40.000 0.00 0.00 41.26 1.75
794 2609 6.149807 GGTTCCACCTTTCGTGTTATGATAAA 59.850 38.462 0.00 0.00 41.26 1.40
795 2610 7.148137 GGTTCCACCTTTCGTGTTATGATAAAT 60.148 37.037 0.00 0.00 41.26 1.40
796 2611 7.315247 TCCACCTTTCGTGTTATGATAAATG 57.685 36.000 0.00 0.00 41.26 2.32
797 2612 6.882140 TCCACCTTTCGTGTTATGATAAATGT 59.118 34.615 0.00 0.00 41.26 2.71
799 2614 8.120465 CCACCTTTCGTGTTATGATAAATGTAC 58.880 37.037 0.00 0.00 41.26 2.90
830 2654 5.183713 TGGTTTGAGTTGGATGATTCATGTC 59.816 40.000 3.32 0.00 0.00 3.06
958 2784 5.469084 GCTAATATCTAAACCGACCCTTTGG 59.531 44.000 0.00 0.00 37.80 3.28
982 2808 3.729108 TGATTCTCTCCAGGAACAGGAT 58.271 45.455 0.00 0.00 45.00 3.24
1082 2908 0.611062 TCCAACTGGATCGTCGTCCT 60.611 55.000 12.88 0.00 39.78 3.85
1188 3034 3.358707 TGTTGAGTGATTGCTGCTTTG 57.641 42.857 0.00 0.00 0.00 2.77
1196 3044 6.598850 TGAGTGATTGCTGCTTTGTAATATCA 59.401 34.615 0.00 0.00 0.00 2.15
1240 3104 6.496565 ACATTCTGCTCACTTCCTAGCTATAT 59.503 38.462 0.00 0.00 39.53 0.86
1256 3170 8.462811 CCTAGCTATATACACTGACATGGTTAG 58.537 40.741 0.00 0.00 0.00 2.34
1370 3323 7.436320 AAGTTTCATTATGCAAATATGGGGT 57.564 32.000 0.00 0.00 0.00 4.95
1391 3344 5.924254 GGGTTAACTTGTTGCTCCAAATTAC 59.076 40.000 5.42 0.00 0.00 1.89
1420 3404 0.958822 AGTTTGGATTTGGTGGTCGC 59.041 50.000 0.00 0.00 0.00 5.19
1421 3405 0.386731 GTTTGGATTTGGTGGTCGCG 60.387 55.000 0.00 0.00 0.00 5.87
1444 3428 2.058705 TCCACCATAACACCAGAACCA 58.941 47.619 0.00 0.00 0.00 3.67
1447 3431 3.561097 CCACCATAACACCAGAACCATCA 60.561 47.826 0.00 0.00 0.00 3.07
1492 3476 2.614057 GCAAGTGTGCGAATAGGCTATT 59.386 45.455 19.32 19.32 41.93 1.73
1511 3495 2.663826 TGCAGCGTACATACATGTCA 57.336 45.000 0.00 0.00 41.97 3.58
1525 3509 0.260816 ATGTCATCATGCTTGGCCCT 59.739 50.000 0.00 0.00 32.51 5.19
1628 3612 2.359107 CTGTGTGGCGCTGACCAT 60.359 61.111 7.64 0.00 43.01 3.55
1716 3700 6.349280 GGTTTTGCAGTTTAGCTCATATCACA 60.349 38.462 0.00 0.00 34.99 3.58
1770 3754 6.590677 TGCAACACACGTGTATTTAGCTATAA 59.409 34.615 22.90 0.00 44.13 0.98
2061 4083 2.162408 CACGGGCTCCATTCTTTCTTTC 59.838 50.000 0.00 0.00 0.00 2.62
2344 4391 1.134818 TCACATCTGTGTACGGGATGC 60.135 52.381 16.89 0.00 45.76 3.91
2479 4529 4.202461 TGGACTGTAAGCTTCTTGAACCAT 60.202 41.667 0.00 0.00 37.60 3.55
2686 4782 1.084289 CCGGTTGCTTGGCTACTTAC 58.916 55.000 0.00 0.00 34.94 2.34
2864 5294 9.608718 AATTATCTAGGGCTATACTTGTCTTCT 57.391 33.333 0.00 0.00 0.00 2.85
2865 5295 9.608718 ATTATCTAGGGCTATACTTGTCTTCTT 57.391 33.333 0.00 0.00 0.00 2.52
2866 5296 7.922699 ATCTAGGGCTATACTTGTCTTCTTT 57.077 36.000 0.00 0.00 0.00 2.52
2867 5297 7.735326 TCTAGGGCTATACTTGTCTTCTTTT 57.265 36.000 0.00 0.00 0.00 2.27
2868 5298 8.147244 TCTAGGGCTATACTTGTCTTCTTTTT 57.853 34.615 0.00 0.00 0.00 1.94
2888 5318 4.503714 TTTTGAGGGAGGGCTATACTTG 57.496 45.455 0.00 0.00 0.00 3.16
2889 5319 2.868964 TGAGGGAGGGCTATACTTGT 57.131 50.000 0.00 0.00 0.00 3.16
2890 5320 2.679082 TGAGGGAGGGCTATACTTGTC 58.321 52.381 0.00 0.00 0.00 3.18
2891 5321 2.247635 TGAGGGAGGGCTATACTTGTCT 59.752 50.000 0.00 0.00 0.00 3.41
2892 5322 3.310193 GAGGGAGGGCTATACTTGTCTT 58.690 50.000 0.00 0.00 0.00 3.01
3023 5456 5.050091 GTCAACTATAATGATGAACCGGCTG 60.050 44.000 0.00 0.00 0.00 4.85
3055 5488 4.657436 AGGATCCAGTGTTTATCGAGAC 57.343 45.455 15.82 0.00 0.00 3.36
3124 5557 4.203226 CTGCTCAGTCTCAGTGAGGTATA 58.797 47.826 19.99 0.00 44.00 1.47
3363 6027 2.497138 TGAGGCAATCACAGTGTCAAG 58.503 47.619 0.00 0.00 31.12 3.02
3423 6087 7.415989 CCATCAATACATTCTTGGAGAAGGTTG 60.416 40.741 12.39 6.97 45.66 3.77
3447 6111 8.561738 TGGTTGAATCATTCTAGTTTTAGGTC 57.438 34.615 0.00 0.00 0.00 3.85
3573 6282 0.389391 ACGACATCCATAGGCTTCCG 59.611 55.000 0.00 0.00 0.00 4.30
3612 6321 0.529773 TTCGTATTAGCGCCTGCCAG 60.530 55.000 2.29 0.00 44.31 4.85
3876 6604 6.043706 CAGGTATGATCTACCCCTTGAGAATT 59.956 42.308 14.26 0.00 38.33 2.17
3896 6624 2.241160 TGCTGTGTTTGCATGGAGAAT 58.759 42.857 0.00 0.00 35.31 2.40
4053 6788 3.005684 CCAGTGAAGCTTAAATGTGGCAA 59.994 43.478 10.29 0.00 0.00 4.52
4054 6789 4.232221 CAGTGAAGCTTAAATGTGGCAAG 58.768 43.478 0.00 0.00 0.00 4.01
4229 7004 6.601613 TCGGTCAAGCCTTTGATAAAATATGT 59.398 34.615 0.00 0.00 44.62 2.29
4294 7069 6.875726 TGTTTCACTTCCTTCTACATGATGAG 59.124 38.462 0.00 0.00 0.00 2.90
4307 7082 7.500992 TCTACATGATGAGGTGGAAAGAATAC 58.499 38.462 0.00 0.00 0.00 1.89
4314 7089 2.238898 AGGTGGAAAGAATACTTCCCCG 59.761 50.000 0.00 0.00 35.05 5.73
4332 7107 2.028385 CCCGGTAAAGAACTAGTGCAGT 60.028 50.000 3.00 0.00 40.05 4.40
4428 7203 6.541641 GCAATCAGAATGTGAGTTATTCCTCT 59.458 38.462 0.00 0.00 39.07 3.69
4437 7212 7.792364 TGTGAGTTATTCCTCTCTCCTAAAA 57.208 36.000 0.00 0.00 32.50 1.52
4559 7359 9.520515 AAATTTGGTGCTTATATACCTCTATGG 57.479 33.333 0.00 0.00 42.93 2.74
4615 7427 0.771127 AGACTGCTGCAAGGGGTTTA 59.229 50.000 3.02 0.00 0.00 2.01
4777 7590 5.221362 GCTAAGGAGATACTGAAGGTCTTCC 60.221 48.000 8.09 0.00 38.77 3.46
5137 8006 1.522668 CATGTCGCCCACAGAAGAAA 58.477 50.000 0.00 0.00 38.85 2.52
5202 8100 6.627087 TTGGGTTAGAAGATGATTCTCACT 57.373 37.500 0.00 0.00 0.00 3.41
5209 8107 8.778358 GTTAGAAGATGATTCTCACTGTGTTTT 58.222 33.333 7.79 0.00 0.00 2.43
5226 8136 5.128468 GTGTTTTAACGACTTTAGAGTGCG 58.872 41.667 0.00 0.00 35.88 5.34
5414 10618 7.148000 CCTCCTCGTTTCTCTGATGCATATATA 60.148 40.741 0.00 0.00 0.00 0.86
5415 10619 8.298729 TCCTCGTTTCTCTGATGCATATATAT 57.701 34.615 0.00 0.00 0.00 0.86
5435 10646 0.398696 TTCTTGTAAGGCCCGCTTGA 59.601 50.000 0.00 0.00 0.00 3.02
5455 10666 6.526674 GCTTGAAATGGGTGTAAATTTCTACG 59.473 38.462 0.00 0.00 41.37 3.51
5503 10720 1.404035 ACCGGTCACAGCTTGTTTTTC 59.596 47.619 0.00 0.00 0.00 2.29
5511 10729 1.410153 CAGCTTGTTTTTCCTGCCTGT 59.590 47.619 0.00 0.00 0.00 4.00
5610 10990 8.119226 CCTAAAGAATTTCTCAAAGCGAGTATG 58.881 37.037 0.00 0.00 42.88 2.39
5611 10991 5.476752 AGAATTTCTCAAAGCGAGTATGC 57.523 39.130 0.00 0.00 42.88 3.14
5690 11072 6.146347 GGAGTTGGATATTGCGAGAAATAGTC 59.854 42.308 0.00 0.00 0.00 2.59
5763 11146 3.161866 TGCCCTGTTTATGAGGAAAACC 58.838 45.455 0.00 0.00 36.26 3.27
5781 11164 1.154225 CGGGCTGAAAATCGCACAC 60.154 57.895 0.00 0.00 0.00 3.82
5807 11190 1.557443 GAACCTCGACGCCAACACTG 61.557 60.000 0.00 0.00 0.00 3.66
5850 11237 0.804933 GCCGCCTTACCTACACGAAG 60.805 60.000 0.00 0.00 0.00 3.79
5895 11282 1.526575 CGGCCATTTGCAGGAACACT 61.527 55.000 2.24 0.00 43.89 3.55
5944 11331 5.772825 TGTGGCCATTATTATTTCAGAGC 57.227 39.130 9.72 0.00 0.00 4.09
5964 11351 8.993121 TCAGAGCAACTAATTCTTGAAGTAAAG 58.007 33.333 0.00 0.00 0.00 1.85
5965 11352 8.778358 CAGAGCAACTAATTCTTGAAGTAAAGT 58.222 33.333 0.00 0.00 0.00 2.66
5966 11353 9.998106 AGAGCAACTAATTCTTGAAGTAAAGTA 57.002 29.630 0.00 0.00 0.00 2.24
5988 11375 6.905076 AGTACGTAAATTGCAATCATTAAGCG 59.095 34.615 13.38 11.29 0.00 4.68
6009 11396 3.013921 GCATCGGGGTGATTCAAAAGTA 58.986 45.455 0.00 0.00 34.13 2.24
6010 11397 3.065371 GCATCGGGGTGATTCAAAAGTAG 59.935 47.826 0.00 0.00 34.13 2.57
6076 11468 5.670485 TCTGTATAGGCAGTAATGGTTGTG 58.330 41.667 0.00 0.00 37.70 3.33
6077 11469 5.423931 TCTGTATAGGCAGTAATGGTTGTGA 59.576 40.000 0.00 0.00 37.70 3.58
6078 11470 5.670485 TGTATAGGCAGTAATGGTTGTGAG 58.330 41.667 0.00 0.00 0.00 3.51
6079 11471 1.826385 AGGCAGTAATGGTTGTGAGC 58.174 50.000 0.00 0.00 0.00 4.26
6080 11472 1.352352 AGGCAGTAATGGTTGTGAGCT 59.648 47.619 0.00 0.00 0.00 4.09
6081 11473 2.162681 GGCAGTAATGGTTGTGAGCTT 58.837 47.619 0.00 0.00 0.00 3.74
6082 11474 2.095059 GGCAGTAATGGTTGTGAGCTTG 60.095 50.000 0.00 0.00 0.00 4.01
6083 11475 2.554032 GCAGTAATGGTTGTGAGCTTGT 59.446 45.455 0.00 0.00 0.00 3.16
6133 11525 3.243501 TGCAAAGTTTGAGCATTGTCCTC 60.244 43.478 19.82 0.00 32.55 3.71
6177 11569 1.009829 GATAGGCTCGCTGTGTTTGG 58.990 55.000 0.00 0.00 0.00 3.28
6178 11570 0.324943 ATAGGCTCGCTGTGTTTGGT 59.675 50.000 0.00 0.00 0.00 3.67
6179 11571 0.970640 TAGGCTCGCTGTGTTTGGTA 59.029 50.000 0.00 0.00 0.00 3.25
6180 11572 0.324943 AGGCTCGCTGTGTTTGGTAT 59.675 50.000 0.00 0.00 0.00 2.73
6181 11573 1.165270 GGCTCGCTGTGTTTGGTATT 58.835 50.000 0.00 0.00 0.00 1.89
6182 11574 1.539827 GGCTCGCTGTGTTTGGTATTT 59.460 47.619 0.00 0.00 0.00 1.40
6183 11575 2.584791 GCTCGCTGTGTTTGGTATTTG 58.415 47.619 0.00 0.00 0.00 2.32
6184 11576 2.584791 CTCGCTGTGTTTGGTATTTGC 58.415 47.619 0.00 0.00 0.00 3.68
6185 11577 2.226330 TCGCTGTGTTTGGTATTTGCT 58.774 42.857 0.00 0.00 0.00 3.91
6186 11578 2.031245 TCGCTGTGTTTGGTATTTGCTG 60.031 45.455 0.00 0.00 0.00 4.41
6187 11579 2.676076 GCTGTGTTTGGTATTTGCTGG 58.324 47.619 0.00 0.00 0.00 4.85
6188 11580 2.676076 CTGTGTTTGGTATTTGCTGGC 58.324 47.619 0.00 0.00 0.00 4.85
6189 11581 2.297033 CTGTGTTTGGTATTTGCTGGCT 59.703 45.455 0.00 0.00 0.00 4.75
6190 11582 2.035704 TGTGTTTGGTATTTGCTGGCTG 59.964 45.455 0.00 0.00 0.00 4.85
6191 11583 1.617850 TGTTTGGTATTTGCTGGCTGG 59.382 47.619 0.00 0.00 0.00 4.85
6192 11584 0.607620 TTTGGTATTTGCTGGCTGGC 59.392 50.000 0.00 0.00 0.00 4.85
6193 11585 0.251742 TTGGTATTTGCTGGCTGGCT 60.252 50.000 2.00 0.00 0.00 4.75
6194 11586 0.966875 TGGTATTTGCTGGCTGGCTG 60.967 55.000 2.00 2.91 0.00 4.85
6195 11587 0.967380 GGTATTTGCTGGCTGGCTGT 60.967 55.000 9.69 0.00 0.00 4.40
6196 11588 0.171903 GTATTTGCTGGCTGGCTGTG 59.828 55.000 9.69 0.00 0.00 3.66
6197 11589 0.251297 TATTTGCTGGCTGGCTGTGT 60.251 50.000 9.69 0.00 0.00 3.72
6198 11590 1.812686 ATTTGCTGGCTGGCTGTGTG 61.813 55.000 9.69 0.00 0.00 3.82
6199 11591 3.719646 TTGCTGGCTGGCTGTGTGT 62.720 57.895 9.69 0.00 0.00 3.72
6200 11592 3.360340 GCTGGCTGGCTGTGTGTC 61.360 66.667 9.69 0.00 0.00 3.67
6201 11593 2.429058 CTGGCTGGCTGTGTGTCT 59.571 61.111 2.00 0.00 0.00 3.41
6202 11594 1.670406 CTGGCTGGCTGTGTGTCTC 60.670 63.158 2.00 0.00 0.00 3.36
6203 11595 2.109517 CTGGCTGGCTGTGTGTCTCT 62.110 60.000 2.00 0.00 0.00 3.10
6204 11596 1.670406 GGCTGGCTGTGTGTCTCTG 60.670 63.158 0.00 0.00 0.00 3.35
6205 11597 1.368950 GCTGGCTGTGTGTCTCTGA 59.631 57.895 0.00 0.00 0.00 3.27
6206 11598 0.250038 GCTGGCTGTGTGTCTCTGAA 60.250 55.000 0.00 0.00 0.00 3.02
6207 11599 1.811558 GCTGGCTGTGTGTCTCTGAAA 60.812 52.381 0.00 0.00 0.00 2.69
6208 11600 2.775890 CTGGCTGTGTGTCTCTGAAAT 58.224 47.619 0.00 0.00 0.00 2.17
6209 11601 3.144506 CTGGCTGTGTGTCTCTGAAATT 58.855 45.455 0.00 0.00 0.00 1.82
6210 11602 3.141398 TGGCTGTGTGTCTCTGAAATTC 58.859 45.455 0.00 0.00 0.00 2.17
6211 11603 3.141398 GGCTGTGTGTCTCTGAAATTCA 58.859 45.455 0.00 0.00 0.00 2.57
6212 11604 3.058639 GGCTGTGTGTCTCTGAAATTCAC 60.059 47.826 0.00 0.00 0.00 3.18
6213 11605 3.812053 GCTGTGTGTCTCTGAAATTCACT 59.188 43.478 0.00 0.00 0.00 3.41
6214 11606 4.084118 GCTGTGTGTCTCTGAAATTCACTC 60.084 45.833 0.00 0.00 0.00 3.51
6215 11607 5.282055 TGTGTGTCTCTGAAATTCACTCT 57.718 39.130 0.00 0.00 0.00 3.24
6216 11608 5.292765 TGTGTGTCTCTGAAATTCACTCTC 58.707 41.667 0.00 0.00 0.00 3.20
6217 11609 5.163416 TGTGTGTCTCTGAAATTCACTCTCA 60.163 40.000 0.00 0.00 0.00 3.27
6218 11610 5.176590 GTGTGTCTCTGAAATTCACTCTCAC 59.823 44.000 0.00 1.35 0.00 3.51
6219 11611 5.163416 TGTGTCTCTGAAATTCACTCTCACA 60.163 40.000 11.97 11.97 0.00 3.58
6220 11612 5.176590 GTGTCTCTGAAATTCACTCTCACAC 59.823 44.000 0.00 0.00 0.00 3.82
6221 11613 5.069648 TGTCTCTGAAATTCACTCTCACACT 59.930 40.000 0.00 0.00 0.00 3.55
6222 11614 5.633182 GTCTCTGAAATTCACTCTCACACTC 59.367 44.000 0.00 0.00 0.00 3.51
6223 11615 5.538053 TCTCTGAAATTCACTCTCACACTCT 59.462 40.000 0.00 0.00 0.00 3.24
6224 11616 5.777802 TCTGAAATTCACTCTCACACTCTC 58.222 41.667 0.00 0.00 0.00 3.20
6225 11617 5.302823 TCTGAAATTCACTCTCACACTCTCA 59.697 40.000 0.00 0.00 0.00 3.27
6226 11618 5.292765 TGAAATTCACTCTCACACTCTCAC 58.707 41.667 0.00 0.00 0.00 3.51
6227 11619 4.944619 AATTCACTCTCACACTCTCACA 57.055 40.909 0.00 0.00 0.00 3.58
6228 11620 3.998099 TTCACTCTCACACTCTCACAG 57.002 47.619 0.00 0.00 0.00 3.66
6229 11621 2.234143 TCACTCTCACACTCTCACAGG 58.766 52.381 0.00 0.00 0.00 4.00
6230 11622 1.959985 CACTCTCACACTCTCACAGGT 59.040 52.381 0.00 0.00 0.00 4.00
6231 11623 2.363680 CACTCTCACACTCTCACAGGTT 59.636 50.000 0.00 0.00 0.00 3.50
6232 11624 2.625790 ACTCTCACACTCTCACAGGTTC 59.374 50.000 0.00 0.00 0.00 3.62
6233 11625 2.625314 CTCTCACACTCTCACAGGTTCA 59.375 50.000 0.00 0.00 0.00 3.18
6234 11626 2.362397 TCTCACACTCTCACAGGTTCAC 59.638 50.000 0.00 0.00 0.00 3.18
6235 11627 1.412710 TCACACTCTCACAGGTTCACC 59.587 52.381 0.00 0.00 0.00 4.02
6237 11629 2.628178 CACACTCTCACAGGTTCACCTA 59.372 50.000 0.00 0.00 46.65 3.08
6238 11630 3.259374 CACACTCTCACAGGTTCACCTAT 59.741 47.826 0.00 0.00 46.65 2.57
6239 11631 4.462834 CACACTCTCACAGGTTCACCTATA 59.537 45.833 0.00 0.00 46.65 1.31
6240 11632 4.463186 ACACTCTCACAGGTTCACCTATAC 59.537 45.833 0.00 0.00 46.65 1.47
6241 11633 3.695060 ACTCTCACAGGTTCACCTATACG 59.305 47.826 0.00 0.00 46.65 3.06
6242 11634 3.945921 CTCTCACAGGTTCACCTATACGA 59.054 47.826 0.00 0.00 46.65 3.43
6243 11635 3.945921 TCTCACAGGTTCACCTATACGAG 59.054 47.826 0.00 3.01 46.65 4.18
6244 11636 3.693807 TCACAGGTTCACCTATACGAGT 58.306 45.455 0.00 0.00 46.65 4.18
6245 11637 4.084287 TCACAGGTTCACCTATACGAGTT 58.916 43.478 0.00 0.00 46.65 3.01
6246 11638 5.255687 TCACAGGTTCACCTATACGAGTTA 58.744 41.667 0.00 0.00 46.65 2.24
6247 11639 5.889853 TCACAGGTTCACCTATACGAGTTAT 59.110 40.000 0.00 0.00 46.65 1.89
6248 11640 5.977725 CACAGGTTCACCTATACGAGTTATG 59.022 44.000 0.00 0.00 46.65 1.90
6249 11641 4.982916 CAGGTTCACCTATACGAGTTATGC 59.017 45.833 0.00 0.00 46.65 3.14
6250 11642 4.647853 AGGTTCACCTATACGAGTTATGCA 59.352 41.667 0.00 0.00 46.48 3.96
6251 11643 4.743644 GGTTCACCTATACGAGTTATGCAC 59.256 45.833 0.00 0.00 0.00 4.57
6252 11644 4.579454 TCACCTATACGAGTTATGCACC 57.421 45.455 0.00 0.00 0.00 5.01
6253 11645 4.212716 TCACCTATACGAGTTATGCACCT 58.787 43.478 0.00 0.00 0.00 4.00
6254 11646 4.037565 TCACCTATACGAGTTATGCACCTG 59.962 45.833 0.00 0.00 0.00 4.00
6255 11647 4.037565 CACCTATACGAGTTATGCACCTGA 59.962 45.833 0.00 0.00 0.00 3.86
6256 11648 4.037684 ACCTATACGAGTTATGCACCTGAC 59.962 45.833 0.00 0.00 0.00 3.51
6257 11649 2.953466 TACGAGTTATGCACCTGACC 57.047 50.000 0.00 0.00 0.00 4.02
6258 11650 1.267121 ACGAGTTATGCACCTGACCT 58.733 50.000 0.00 0.00 0.00 3.85
6259 11651 1.066858 ACGAGTTATGCACCTGACCTG 60.067 52.381 0.00 0.00 0.00 4.00
6260 11652 1.204704 CGAGTTATGCACCTGACCTGA 59.795 52.381 0.00 0.00 0.00 3.86
6261 11653 2.159043 CGAGTTATGCACCTGACCTGAT 60.159 50.000 0.00 0.00 0.00 2.90
6262 11654 3.679917 CGAGTTATGCACCTGACCTGATT 60.680 47.826 0.00 0.00 0.00 2.57
6263 11655 3.873952 GAGTTATGCACCTGACCTGATTC 59.126 47.826 0.00 0.00 0.00 2.52
6264 11656 3.264193 AGTTATGCACCTGACCTGATTCA 59.736 43.478 0.00 0.00 0.00 2.57
6265 11657 4.080129 AGTTATGCACCTGACCTGATTCAT 60.080 41.667 0.00 0.00 0.00 2.57
6266 11658 2.118313 TGCACCTGACCTGATTCATG 57.882 50.000 0.00 0.00 0.00 3.07
6267 11659 1.629861 TGCACCTGACCTGATTCATGA 59.370 47.619 0.00 0.00 0.00 3.07
6268 11660 2.012673 GCACCTGACCTGATTCATGAC 58.987 52.381 0.00 0.00 0.00 3.06
6269 11661 2.355513 GCACCTGACCTGATTCATGACT 60.356 50.000 0.00 0.00 0.00 3.41
6270 11662 3.871463 GCACCTGACCTGATTCATGACTT 60.871 47.826 0.00 0.00 0.00 3.01
6271 11663 4.330250 CACCTGACCTGATTCATGACTTT 58.670 43.478 0.00 0.00 0.00 2.66
6272 11664 4.763793 CACCTGACCTGATTCATGACTTTT 59.236 41.667 0.00 0.00 0.00 2.27
6273 11665 5.006386 ACCTGACCTGATTCATGACTTTTC 58.994 41.667 0.00 0.00 0.00 2.29
6274 11666 4.397417 CCTGACCTGATTCATGACTTTTCC 59.603 45.833 0.00 0.00 0.00 3.13
6275 11667 5.246981 TGACCTGATTCATGACTTTTCCT 57.753 39.130 0.00 0.00 0.00 3.36
6282 11674 7.226325 CCTGATTCATGACTTTTCCTAGACATC 59.774 40.741 0.00 0.00 30.06 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 5.738118 AAACCAAAACATTTGCACATCTG 57.262 34.783 0.00 0.00 0.00 2.90
35 36 7.335422 TGTTTAAACCAAAACATTTGCACATCT 59.665 29.630 15.59 0.00 42.78 2.90
36 37 7.467623 TGTTTAAACCAAAACATTTGCACATC 58.532 30.769 15.59 0.00 42.78 3.06
37 38 7.383102 TGTTTAAACCAAAACATTTGCACAT 57.617 28.000 15.59 0.00 42.78 3.21
38 39 6.801539 TGTTTAAACCAAAACATTTGCACA 57.198 29.167 15.59 0.00 42.78 4.57
81 83 6.014840 GGATCCTCCGTTGTATACAAGGAATA 60.015 42.308 30.45 20.93 42.45 1.75
84 86 3.640029 GGATCCTCCGTTGTATACAAGGA 59.360 47.826 30.45 25.76 42.45 3.36
98 100 1.066757 GTTTACTCCGTCGGATCCTCC 59.933 57.143 15.81 0.00 0.00 4.30
108 110 5.163513 CGTTGTATACAAGGTTTACTCCGT 58.836 41.667 23.83 0.00 37.07 4.69
131 133 1.044790 TTTACCCCGTCGGATCCTCC 61.045 60.000 14.39 0.00 34.64 4.30
132 134 0.103755 GTTTACCCCGTCGGATCCTC 59.896 60.000 14.39 1.89 34.64 3.71
133 135 1.332889 GGTTTACCCCGTCGGATCCT 61.333 60.000 14.39 0.00 34.64 3.24
134 136 1.144716 GGTTTACCCCGTCGGATCC 59.855 63.158 14.39 0.00 34.64 3.36
135 137 0.538584 AAGGTTTACCCCGTCGGATC 59.461 55.000 14.39 0.00 36.42 3.36
136 138 0.251073 CAAGGTTTACCCCGTCGGAT 59.749 55.000 14.39 2.70 36.42 4.18
137 139 1.120795 ACAAGGTTTACCCCGTCGGA 61.121 55.000 14.39 0.00 36.42 4.55
139 141 1.273327 AGTACAAGGTTTACCCCGTCG 59.727 52.381 0.00 0.00 36.42 5.12
140 142 3.258123 TGTAGTACAAGGTTTACCCCGTC 59.742 47.826 0.00 0.00 36.42 4.79
141 143 3.006859 GTGTAGTACAAGGTTTACCCCGT 59.993 47.826 4.11 0.00 36.42 5.28
142 144 3.588955 GTGTAGTACAAGGTTTACCCCG 58.411 50.000 4.11 0.00 36.42 5.73
143 145 3.258123 TCGTGTAGTACAAGGTTTACCCC 59.742 47.826 15.00 0.00 36.42 4.95
144 146 4.488879 CTCGTGTAGTACAAGGTTTACCC 58.511 47.826 15.00 0.00 36.42 3.69
145 147 3.922850 GCTCGTGTAGTACAAGGTTTACC 59.077 47.826 15.00 0.00 0.00 2.85
146 148 4.802999 AGCTCGTGTAGTACAAGGTTTAC 58.197 43.478 15.00 2.70 0.00 2.01
147 149 5.224888 CAAGCTCGTGTAGTACAAGGTTTA 58.775 41.667 15.00 0.00 27.81 2.01
148 150 4.056050 CAAGCTCGTGTAGTACAAGGTTT 58.944 43.478 15.00 8.16 27.81 3.27
149 151 3.554337 CCAAGCTCGTGTAGTACAAGGTT 60.554 47.826 15.00 13.29 29.69 3.50
150 152 2.029290 CCAAGCTCGTGTAGTACAAGGT 60.029 50.000 15.00 8.35 0.00 3.50
151 153 2.607187 CCAAGCTCGTGTAGTACAAGG 58.393 52.381 15.00 6.37 0.00 3.61
152 154 1.993370 GCCAAGCTCGTGTAGTACAAG 59.007 52.381 4.11 7.26 0.00 3.16
153 155 1.667756 CGCCAAGCTCGTGTAGTACAA 60.668 52.381 4.11 0.00 0.00 2.41
154 156 0.109458 CGCCAAGCTCGTGTAGTACA 60.109 55.000 0.00 0.00 0.00 2.90
201 1669 4.933563 TGCTGCTCCTGCACGCAA 62.934 61.111 0.00 0.00 45.31 4.85
340 1812 4.871871 TGGATTTTACTCCCTTATGCCA 57.128 40.909 0.00 0.00 34.12 4.92
405 2217 3.138884 TGCATGTTTCACTGCTAAGGA 57.861 42.857 0.00 0.00 39.16 3.36
501 2313 6.172630 TGCTCTCTCAAATTGCATGTTACTA 58.827 36.000 0.00 0.00 0.00 1.82
546 2358 4.314740 TGTGTTAACCAATTTCAGCCAC 57.685 40.909 2.48 0.00 0.00 5.01
577 2389 5.105635 ACATCTATCATGCCAACAAAACCAG 60.106 40.000 0.00 0.00 0.00 4.00
638 2450 5.294799 TGTTAATCAACAACACAGCGTAACT 59.705 36.000 0.00 0.00 41.69 2.24
645 2457 6.422223 GTCTGACTGTTAATCAACAACACAG 58.578 40.000 0.00 0.00 43.92 3.66
659 2471 7.390718 GGTTGTGATATTTTAGGTCTGACTGTT 59.609 37.037 7.85 0.00 0.00 3.16
660 2472 6.879458 GGTTGTGATATTTTAGGTCTGACTGT 59.121 38.462 7.85 0.00 0.00 3.55
661 2473 7.106239 AGGTTGTGATATTTTAGGTCTGACTG 58.894 38.462 7.85 0.00 0.00 3.51
663 2475 7.278868 CAGAGGTTGTGATATTTTAGGTCTGAC 59.721 40.741 0.00 0.00 30.32 3.51
664 2476 7.038302 ACAGAGGTTGTGATATTTTAGGTCTGA 60.038 37.037 0.00 0.00 38.99 3.27
665 2477 7.106239 ACAGAGGTTGTGATATTTTAGGTCTG 58.894 38.462 0.00 0.00 38.99 3.51
679 2493 9.088512 GTCTTATATTCAGTTACAGAGGTTGTG 57.911 37.037 0.00 0.00 41.10 3.33
682 2496 8.064336 ACGTCTTATATTCAGTTACAGAGGTT 57.936 34.615 0.00 0.00 0.00 3.50
793 2608 7.504238 TCCAACTCAAACCATTAGTTGTACATT 59.496 33.333 12.05 0.00 45.51 2.71
794 2609 7.001674 TCCAACTCAAACCATTAGTTGTACAT 58.998 34.615 12.05 0.00 45.51 2.29
795 2610 6.358178 TCCAACTCAAACCATTAGTTGTACA 58.642 36.000 12.05 0.00 45.51 2.90
796 2611 6.870971 TCCAACTCAAACCATTAGTTGTAC 57.129 37.500 12.05 0.00 45.51 2.90
797 2612 7.227873 TCATCCAACTCAAACCATTAGTTGTA 58.772 34.615 12.05 0.00 45.51 2.41
799 2614 6.573664 TCATCCAACTCAAACCATTAGTTG 57.426 37.500 7.32 7.32 46.18 3.16
808 2632 6.072286 ACAGACATGAATCATCCAACTCAAAC 60.072 38.462 0.00 0.00 0.00 2.93
958 2784 4.651503 TCCTGTTCCTGGAGAGAATCATAC 59.348 45.833 0.00 0.00 37.82 2.39
982 2808 0.541998 ATCACCACGAGACACCTCCA 60.542 55.000 0.00 0.00 36.04 3.86
1082 2908 1.311859 GAAATGGCAGCCATCGATGA 58.688 50.000 27.82 5.80 44.40 2.92
1196 3044 8.407064 CAGAATGTTAACGGTTAGAGACTATCT 58.593 37.037 0.26 3.18 42.47 1.98
1240 3104 5.081728 ACCACTACTAACCATGTCAGTGTA 58.918 41.667 0.00 0.00 33.23 2.90
1256 3170 3.751175 TGATGCAGTTGCTTAACCACTAC 59.249 43.478 5.62 0.00 42.66 2.73
1370 3323 9.255304 GATTTGTAATTTGGAGCAACAAGTTAA 57.745 29.630 8.99 0.00 35.32 2.01
1391 3344 7.661027 ACCACCAAATCCAAACTTAATGATTTG 59.339 33.333 13.95 13.95 46.89 2.32
1407 3360 1.062525 GATGCGCGACCACCAAATC 59.937 57.895 12.10 0.00 0.00 2.17
1420 3404 1.016627 CTGGTGTTATGGTGGATGCG 58.983 55.000 0.00 0.00 0.00 4.73
1421 3405 2.418368 TCTGGTGTTATGGTGGATGC 57.582 50.000 0.00 0.00 0.00 3.91
1444 3428 4.396166 CCAACAAACCGCTTTAGATCTGAT 59.604 41.667 5.18 0.00 0.00 2.90
1447 3431 4.015872 TCCAACAAACCGCTTTAGATCT 57.984 40.909 0.00 0.00 0.00 2.75
1492 3476 2.663826 TGACATGTATGTACGCTGCA 57.336 45.000 0.00 0.00 41.95 4.41
1507 3491 0.040058 AAGGGCCAAGCATGATGACA 59.960 50.000 6.18 0.00 0.00 3.58
1511 3495 2.123428 GCGAAGGGCCAAGCATGAT 61.123 57.895 6.18 0.00 34.80 2.45
1525 3509 4.415332 GCTCCTCCACGACGCGAA 62.415 66.667 15.93 0.00 0.00 4.70
1651 3635 0.320374 AATTTCTGTCTCCCGTGCGA 59.680 50.000 0.00 0.00 0.00 5.10
1770 3754 8.328758 TGGACACTGGAAAGAACAGATATAAAT 58.671 33.333 0.00 0.00 39.24 1.40
1778 3762 3.199880 AGTGGACACTGGAAAGAACAG 57.800 47.619 3.82 0.00 40.75 3.16
2061 4083 6.365247 CCAAAGAATGAACAAAATGCTCTCAG 59.635 38.462 0.00 0.00 0.00 3.35
2096 4121 9.696917 AAAACAAACAGAAATATAAGAAGCAGG 57.303 29.630 0.00 0.00 0.00 4.85
2533 4584 7.601856 TGATTTTATTGTCAAGGACATCAACC 58.398 34.615 0.00 0.00 42.40 3.77
2866 5296 4.291249 ACAAGTATAGCCCTCCCTCAAAAA 59.709 41.667 0.00 0.00 0.00 1.94
2867 5297 3.850173 ACAAGTATAGCCCTCCCTCAAAA 59.150 43.478 0.00 0.00 0.00 2.44
2868 5298 3.454812 GACAAGTATAGCCCTCCCTCAAA 59.545 47.826 0.00 0.00 0.00 2.69
2869 5299 3.039011 GACAAGTATAGCCCTCCCTCAA 58.961 50.000 0.00 0.00 0.00 3.02
2870 5300 2.247635 AGACAAGTATAGCCCTCCCTCA 59.752 50.000 0.00 0.00 0.00 3.86
2871 5301 2.965562 AGACAAGTATAGCCCTCCCTC 58.034 52.381 0.00 0.00 0.00 4.30
2872 5302 3.423058 AAGACAAGTATAGCCCTCCCT 57.577 47.619 0.00 0.00 0.00 4.20
2873 5303 4.200092 CAAAAGACAAGTATAGCCCTCCC 58.800 47.826 0.00 0.00 0.00 4.30
2874 5304 4.844884 ACAAAAGACAAGTATAGCCCTCC 58.155 43.478 0.00 0.00 0.00 4.30
2875 5305 5.524281 GCTACAAAAGACAAGTATAGCCCTC 59.476 44.000 0.00 0.00 0.00 4.30
2876 5306 5.045869 TGCTACAAAAGACAAGTATAGCCCT 60.046 40.000 0.00 0.00 34.08 5.19
2877 5307 5.183228 TGCTACAAAAGACAAGTATAGCCC 58.817 41.667 0.00 0.00 34.08 5.19
2878 5308 6.927294 ATGCTACAAAAGACAAGTATAGCC 57.073 37.500 0.00 0.00 34.08 3.93
2879 5309 7.148239 ACCAATGCTACAAAAGACAAGTATAGC 60.148 37.037 0.00 0.00 35.28 2.97
2880 5310 8.268850 ACCAATGCTACAAAAGACAAGTATAG 57.731 34.615 0.00 0.00 0.00 1.31
2881 5311 9.899661 ATACCAATGCTACAAAAGACAAGTATA 57.100 29.630 0.00 0.00 0.00 1.47
2882 5312 8.677300 CATACCAATGCTACAAAAGACAAGTAT 58.323 33.333 0.00 0.00 0.00 2.12
2883 5313 7.880713 TCATACCAATGCTACAAAAGACAAGTA 59.119 33.333 0.00 0.00 32.76 2.24
2884 5314 6.714810 TCATACCAATGCTACAAAAGACAAGT 59.285 34.615 0.00 0.00 32.76 3.16
2885 5315 7.144722 TCATACCAATGCTACAAAAGACAAG 57.855 36.000 0.00 0.00 32.76 3.16
2886 5316 7.517614 TTCATACCAATGCTACAAAAGACAA 57.482 32.000 0.00 0.00 32.76 3.18
2887 5317 7.392953 TGATTCATACCAATGCTACAAAAGACA 59.607 33.333 0.00 0.00 32.76 3.41
2888 5318 7.761409 TGATTCATACCAATGCTACAAAAGAC 58.239 34.615 0.00 0.00 32.76 3.01
2889 5319 7.936496 TGATTCATACCAATGCTACAAAAGA 57.064 32.000 0.00 0.00 32.76 2.52
2890 5320 9.590451 AAATGATTCATACCAATGCTACAAAAG 57.410 29.630 0.00 0.00 32.76 2.27
2891 5321 9.941325 AAAATGATTCATACCAATGCTACAAAA 57.059 25.926 0.00 0.00 32.76 2.44
2892 5322 9.941325 AAAAATGATTCATACCAATGCTACAAA 57.059 25.926 0.00 0.00 32.76 2.83
2926 5356 7.415206 CCCTAAAAGAAAATAGACGGTTCATGG 60.415 40.741 0.00 0.00 0.00 3.66
2928 5358 7.399634 TCCCTAAAAGAAAATAGACGGTTCAT 58.600 34.615 0.00 0.00 0.00 2.57
3092 5525 3.055819 TGAGACTGAGCAGGGACATAAAC 60.056 47.826 2.20 0.00 0.00 2.01
3352 6016 5.739752 TGAGATCAAAACTTGACACTGTG 57.260 39.130 6.19 6.19 43.48 3.66
3363 6027 5.983540 ACTCAGGACCTATGAGATCAAAAC 58.016 41.667 15.76 0.00 45.80 2.43
3423 6087 8.669243 CAGACCTAAAACTAGAATGATTCAACC 58.331 37.037 8.03 0.00 0.00 3.77
3447 6111 2.557920 AAGAGTTGGACTGGAAGCAG 57.442 50.000 0.00 0.00 37.60 4.24
3485 6194 4.026744 ACACAGGTAGTCTGATGCTGTAT 58.973 43.478 0.00 0.00 46.18 2.29
3486 6195 3.431415 ACACAGGTAGTCTGATGCTGTA 58.569 45.455 0.00 0.00 46.18 2.74
3487 6196 2.232452 GACACAGGTAGTCTGATGCTGT 59.768 50.000 0.00 0.00 46.18 4.40
3573 6282 7.316544 ACGAACAATGGTCCAATTAGAATAC 57.683 36.000 0.00 0.00 0.00 1.89
3612 6321 7.777095 ACTATAGAAGTCCTCACTGATCAAAC 58.223 38.462 6.78 0.00 30.33 2.93
3647 6356 5.453648 TGGTATTGTCGCATGTGTTTAAAC 58.546 37.500 11.54 11.54 0.00 2.01
3842 6570 6.952358 GGGGTAGATCATACCTGTACTCATTA 59.048 42.308 16.24 0.00 37.71 1.90
4053 6788 4.223923 AGACAGCCTGTATAAACTGAAGCT 59.776 41.667 0.00 0.00 34.25 3.74
4054 6789 4.508662 AGACAGCCTGTATAAACTGAAGC 58.491 43.478 0.00 0.00 34.25 3.86
4204 6979 6.601613 ACATATTTTATCAAAGGCTTGACCGA 59.398 34.615 0.00 0.00 44.28 4.69
4229 7004 9.195411 GAAATGATTAATCTGCAAAACAAGTCA 57.805 29.630 16.24 0.00 0.00 3.41
4263 7038 9.334947 CATGTAGAAGGAAGTGAAACATGATAT 57.665 33.333 0.00 0.00 43.28 1.63
4264 7039 8.539544 TCATGTAGAAGGAAGTGAAACATGATA 58.460 33.333 10.31 0.00 43.91 2.15
4307 7082 3.858247 CACTAGTTCTTTACCGGGGAAG 58.142 50.000 6.32 9.68 0.00 3.46
4314 7089 3.995048 GGTGACTGCACTAGTTCTTTACC 59.005 47.826 0.00 0.00 44.52 2.85
4332 7107 4.336889 CTTCTACTTGGAAGTGTGGTGA 57.663 45.455 2.14 0.00 40.07 4.02
4455 7230 8.426881 TCGACATATTCATAAACATTTCCGAA 57.573 30.769 0.00 0.00 0.00 4.30
4474 7249 3.384789 ACATACTGCACTACCATCGACAT 59.615 43.478 0.00 0.00 0.00 3.06
4590 7402 2.435805 CCCCTTGCAGCAGTCTATCTTA 59.564 50.000 0.00 0.00 0.00 2.10
4597 7409 1.269723 GTTAAACCCCTTGCAGCAGTC 59.730 52.381 0.00 0.00 0.00 3.51
4598 7410 1.133482 AGTTAAACCCCTTGCAGCAGT 60.133 47.619 0.00 0.00 0.00 4.40
4615 7427 9.778741 TGATTTGTTCTAACTATGACAAGAGTT 57.221 29.630 10.11 10.11 40.81 3.01
4949 7777 4.673534 AAATACCTTTTGACGGTAAGCG 57.326 40.909 0.00 0.00 40.19 4.68
5023 7869 9.529325 GGGGATTTTAAATTGTAAGCATCTAAC 57.471 33.333 0.00 0.00 0.00 2.34
5105 7958 1.452110 CGACATGGAATTGAGGTGCA 58.548 50.000 0.00 0.00 0.00 4.57
5202 8100 5.276489 CGCACTCTAAAGTCGTTAAAACACA 60.276 40.000 0.00 0.00 31.71 3.72
5209 8107 4.171005 CCATTCGCACTCTAAAGTCGTTA 58.829 43.478 0.00 0.00 31.71 3.18
5226 8136 1.598701 GCTTCCACCTGCACCCATTC 61.599 60.000 0.00 0.00 0.00 2.67
5414 10618 1.818674 CAAGCGGGCCTTACAAGAAAT 59.181 47.619 0.84 0.00 31.00 2.17
5415 10619 1.202830 TCAAGCGGGCCTTACAAGAAA 60.203 47.619 0.84 0.00 31.00 2.52
5418 10622 1.243902 TTTCAAGCGGGCCTTACAAG 58.756 50.000 0.84 0.00 31.00 3.16
5435 10646 5.014202 AGGCGTAGAAATTTACACCCATTT 58.986 37.500 0.00 0.00 0.00 2.32
5503 10720 1.193874 GTCGTTTCGTTTACAGGCAGG 59.806 52.381 0.00 0.00 0.00 4.85
5511 10729 2.546373 CCTGGACTGGTCGTTTCGTTTA 60.546 50.000 0.00 0.00 0.00 2.01
5610 10990 4.002316 AGAATCTCTGTCTTTCAAGCAGC 58.998 43.478 6.27 0.00 33.29 5.25
5611 10991 6.531240 GTCTAGAATCTCTGTCTTTCAAGCAG 59.469 42.308 0.00 5.22 34.01 4.24
5690 11072 1.376037 GCAGACCAGGGAAGAACGG 60.376 63.158 0.00 0.00 0.00 4.44
5763 11146 1.154225 GTGTGCGATTTTCAGCCCG 60.154 57.895 0.00 0.00 0.00 6.13
5786 11169 2.741211 GTTGGCGTCGAGGTTCCC 60.741 66.667 7.01 0.21 0.00 3.97
5807 11190 1.577328 CCGGAATCAGTGGTGTGTGC 61.577 60.000 0.00 0.00 0.00 4.57
5850 11237 1.444895 CAGCTTTGGTGCCGATTGC 60.445 57.895 0.00 0.00 41.77 3.56
5964 11351 6.343924 GCGCTTAATGATTGCAATTTACGTAC 60.344 38.462 14.33 0.00 0.00 3.67
5965 11352 5.679355 GCGCTTAATGATTGCAATTTACGTA 59.321 36.000 14.33 0.00 0.00 3.57
5966 11353 4.499040 GCGCTTAATGATTGCAATTTACGT 59.501 37.500 14.33 0.00 0.00 3.57
5967 11354 4.498681 TGCGCTTAATGATTGCAATTTACG 59.501 37.500 14.33 10.55 31.69 3.18
5988 11375 1.818674 ACTTTTGAATCACCCCGATGC 59.181 47.619 0.00 0.00 33.40 3.91
6033 11425 4.878971 CAGAACTCTGCTAGACTGCTAGTA 59.121 45.833 0.00 0.00 44.84 1.82
6034 11426 3.694072 CAGAACTCTGCTAGACTGCTAGT 59.306 47.826 0.00 0.00 44.84 2.57
6035 11427 4.291540 CAGAACTCTGCTAGACTGCTAG 57.708 50.000 0.00 0.00 45.63 3.42
6076 11468 1.820519 TGGCCAAATGATCACAAGCTC 59.179 47.619 0.61 0.00 0.00 4.09
6077 11469 1.927487 TGGCCAAATGATCACAAGCT 58.073 45.000 0.61 0.00 0.00 3.74
6078 11470 2.546778 CATGGCCAAATGATCACAAGC 58.453 47.619 10.96 0.00 0.00 4.01
6079 11471 2.740580 GCCATGGCCAAATGATCACAAG 60.741 50.000 27.24 0.00 34.56 3.16
6080 11472 1.207570 GCCATGGCCAAATGATCACAA 59.792 47.619 27.24 0.00 34.56 3.33
6081 11473 0.825410 GCCATGGCCAAATGATCACA 59.175 50.000 27.24 0.00 34.56 3.58
6082 11474 0.825410 TGCCATGGCCAAATGATCAC 59.175 50.000 33.44 2.26 41.09 3.06
6083 11475 1.569653 TTGCCATGGCCAAATGATCA 58.430 45.000 33.44 9.03 41.09 2.92
6133 11525 0.518636 CAACTGCGACCATGGTCTTG 59.481 55.000 35.84 28.86 42.54 3.02
6146 11538 2.289002 CGAGCCTATCATTTCCAACTGC 59.711 50.000 0.00 0.00 0.00 4.40
6177 11569 0.171903 CACAGCCAGCCAGCAAATAC 59.828 55.000 0.00 0.00 34.23 1.89
6178 11570 0.251297 ACACAGCCAGCCAGCAAATA 60.251 50.000 0.00 0.00 34.23 1.40
6179 11571 1.532316 ACACAGCCAGCCAGCAAAT 60.532 52.632 0.00 0.00 34.23 2.32
6180 11572 2.123769 ACACAGCCAGCCAGCAAA 60.124 55.556 0.00 0.00 34.23 3.68
6181 11573 2.908428 CACACAGCCAGCCAGCAA 60.908 61.111 0.00 0.00 34.23 3.91
6182 11574 4.193893 ACACACAGCCAGCCAGCA 62.194 61.111 0.00 0.00 34.23 4.41
6183 11575 3.360340 GACACACAGCCAGCCAGC 61.360 66.667 0.00 0.00 0.00 4.85
6184 11576 1.670406 GAGACACACAGCCAGCCAG 60.670 63.158 0.00 0.00 0.00 4.85
6185 11577 2.142761 AGAGACACACAGCCAGCCA 61.143 57.895 0.00 0.00 0.00 4.75
6186 11578 1.670406 CAGAGACACACAGCCAGCC 60.670 63.158 0.00 0.00 0.00 4.85
6187 11579 0.250038 TTCAGAGACACACAGCCAGC 60.250 55.000 0.00 0.00 0.00 4.85
6188 11580 2.245159 TTTCAGAGACACACAGCCAG 57.755 50.000 0.00 0.00 0.00 4.85
6189 11581 2.936919 ATTTCAGAGACACACAGCCA 57.063 45.000 0.00 0.00 0.00 4.75
6190 11582 3.058639 GTGAATTTCAGAGACACACAGCC 60.059 47.826 0.00 0.00 0.00 4.85
6191 11583 3.812053 AGTGAATTTCAGAGACACACAGC 59.188 43.478 0.00 0.00 34.47 4.40
6192 11584 5.295950 AGAGTGAATTTCAGAGACACACAG 58.704 41.667 0.00 0.00 34.47 3.66
6193 11585 5.163416 TGAGAGTGAATTTCAGAGACACACA 60.163 40.000 0.00 0.00 34.47 3.72
6194 11586 5.176590 GTGAGAGTGAATTTCAGAGACACAC 59.823 44.000 0.00 3.21 34.47 3.82
6195 11587 5.163416 TGTGAGAGTGAATTTCAGAGACACA 60.163 40.000 17.39 17.39 34.47 3.72
6196 11588 5.176590 GTGTGAGAGTGAATTTCAGAGACAC 59.823 44.000 0.00 8.94 0.00 3.67
6197 11589 5.069648 AGTGTGAGAGTGAATTTCAGAGACA 59.930 40.000 0.00 0.00 0.00 3.41
6198 11590 5.537188 AGTGTGAGAGTGAATTTCAGAGAC 58.463 41.667 0.00 0.00 0.00 3.36
6199 11591 5.538053 AGAGTGTGAGAGTGAATTTCAGAGA 59.462 40.000 0.00 0.00 0.00 3.10
6200 11592 5.782047 AGAGTGTGAGAGTGAATTTCAGAG 58.218 41.667 0.00 0.00 0.00 3.35
6201 11593 5.302823 TGAGAGTGTGAGAGTGAATTTCAGA 59.697 40.000 0.00 0.00 0.00 3.27
6202 11594 5.404968 GTGAGAGTGTGAGAGTGAATTTCAG 59.595 44.000 0.00 0.00 0.00 3.02
6203 11595 5.163416 TGTGAGAGTGTGAGAGTGAATTTCA 60.163 40.000 0.00 0.00 0.00 2.69
6204 11596 5.292765 TGTGAGAGTGTGAGAGTGAATTTC 58.707 41.667 0.00 0.00 0.00 2.17
6205 11597 5.282055 TGTGAGAGTGTGAGAGTGAATTT 57.718 39.130 0.00 0.00 0.00 1.82
6206 11598 4.262377 CCTGTGAGAGTGTGAGAGTGAATT 60.262 45.833 0.00 0.00 0.00 2.17
6207 11599 3.257873 CCTGTGAGAGTGTGAGAGTGAAT 59.742 47.826 0.00 0.00 0.00 2.57
6208 11600 2.625314 CCTGTGAGAGTGTGAGAGTGAA 59.375 50.000 0.00 0.00 0.00 3.18
6209 11601 2.234143 CCTGTGAGAGTGTGAGAGTGA 58.766 52.381 0.00 0.00 0.00 3.41
6210 11602 1.959985 ACCTGTGAGAGTGTGAGAGTG 59.040 52.381 0.00 0.00 0.00 3.51
6211 11603 2.373335 ACCTGTGAGAGTGTGAGAGT 57.627 50.000 0.00 0.00 0.00 3.24
6212 11604 2.625314 TGAACCTGTGAGAGTGTGAGAG 59.375 50.000 0.00 0.00 0.00 3.20
6213 11605 2.362397 GTGAACCTGTGAGAGTGTGAGA 59.638 50.000 0.00 0.00 0.00 3.27
6214 11606 2.546795 GGTGAACCTGTGAGAGTGTGAG 60.547 54.545 0.00 0.00 0.00 3.51
6215 11607 1.412710 GGTGAACCTGTGAGAGTGTGA 59.587 52.381 0.00 0.00 0.00 3.58
6216 11608 1.414181 AGGTGAACCTGTGAGAGTGTG 59.586 52.381 0.00 0.00 46.55 3.82
6217 11609 1.794714 AGGTGAACCTGTGAGAGTGT 58.205 50.000 0.00 0.00 46.55 3.55
6228 11620 4.743644 GTGCATAACTCGTATAGGTGAACC 59.256 45.833 0.00 0.00 0.00 3.62
6229 11621 4.743644 GGTGCATAACTCGTATAGGTGAAC 59.256 45.833 0.00 0.00 0.00 3.18
6230 11622 4.647853 AGGTGCATAACTCGTATAGGTGAA 59.352 41.667 0.00 0.00 0.00 3.18
6231 11623 4.037565 CAGGTGCATAACTCGTATAGGTGA 59.962 45.833 0.00 0.00 0.00 4.02
6232 11624 4.037565 TCAGGTGCATAACTCGTATAGGTG 59.962 45.833 0.00 0.00 0.00 4.00
6233 11625 4.037684 GTCAGGTGCATAACTCGTATAGGT 59.962 45.833 0.00 0.00 0.00 3.08
6234 11626 4.547532 GTCAGGTGCATAACTCGTATAGG 58.452 47.826 0.00 0.00 0.00 2.57
6235 11627 4.278669 AGGTCAGGTGCATAACTCGTATAG 59.721 45.833 0.00 0.00 0.00 1.31
6236 11628 4.037565 CAGGTCAGGTGCATAACTCGTATA 59.962 45.833 0.00 0.00 0.00 1.47
6237 11629 3.031736 AGGTCAGGTGCATAACTCGTAT 58.968 45.455 0.00 0.00 0.00 3.06
6238 11630 2.165641 CAGGTCAGGTGCATAACTCGTA 59.834 50.000 0.00 0.00 0.00 3.43
6239 11631 1.066858 CAGGTCAGGTGCATAACTCGT 60.067 52.381 0.00 0.00 0.00 4.18
6240 11632 1.204704 TCAGGTCAGGTGCATAACTCG 59.795 52.381 0.00 0.00 0.00 4.18
6241 11633 3.550437 ATCAGGTCAGGTGCATAACTC 57.450 47.619 0.00 0.00 0.00 3.01
6242 11634 3.264193 TGAATCAGGTCAGGTGCATAACT 59.736 43.478 0.00 0.00 0.00 2.24
6243 11635 3.609853 TGAATCAGGTCAGGTGCATAAC 58.390 45.455 0.00 0.00 0.00 1.89
6244 11636 3.998913 TGAATCAGGTCAGGTGCATAA 57.001 42.857 0.00 0.00 0.00 1.90
6245 11637 3.455543 TCATGAATCAGGTCAGGTGCATA 59.544 43.478 0.00 0.00 31.34 3.14
6246 11638 2.240414 TCATGAATCAGGTCAGGTGCAT 59.760 45.455 0.00 0.00 31.34 3.96
6247 11639 1.629861 TCATGAATCAGGTCAGGTGCA 59.370 47.619 0.00 0.00 31.34 4.57
6248 11640 2.012673 GTCATGAATCAGGTCAGGTGC 58.987 52.381 0.00 0.00 31.34 5.01
6249 11641 3.623906 AGTCATGAATCAGGTCAGGTG 57.376 47.619 0.00 0.00 31.34 4.00
6250 11642 4.647564 AAAGTCATGAATCAGGTCAGGT 57.352 40.909 0.00 0.00 31.34 4.00
6251 11643 4.397417 GGAAAAGTCATGAATCAGGTCAGG 59.603 45.833 0.00 0.00 0.00 3.86
6252 11644 5.251764 AGGAAAAGTCATGAATCAGGTCAG 58.748 41.667 0.00 0.00 0.00 3.51
6253 11645 5.246981 AGGAAAAGTCATGAATCAGGTCA 57.753 39.130 0.00 0.00 0.00 4.02
6254 11646 6.536941 GTCTAGGAAAAGTCATGAATCAGGTC 59.463 42.308 0.00 0.00 0.00 3.85
6255 11647 6.013379 TGTCTAGGAAAAGTCATGAATCAGGT 60.013 38.462 0.00 0.00 0.00 4.00
6256 11648 6.409704 TGTCTAGGAAAAGTCATGAATCAGG 58.590 40.000 0.00 0.00 0.00 3.86
6257 11649 7.767659 TGATGTCTAGGAAAAGTCATGAATCAG 59.232 37.037 0.00 0.00 0.00 2.90
6258 11650 7.623630 TGATGTCTAGGAAAAGTCATGAATCA 58.376 34.615 0.00 0.00 0.00 2.57
6259 11651 7.768120 ACTGATGTCTAGGAAAAGTCATGAATC 59.232 37.037 0.00 0.00 0.00 2.52
6260 11652 7.628234 ACTGATGTCTAGGAAAAGTCATGAAT 58.372 34.615 0.00 0.00 0.00 2.57
6261 11653 7.009179 ACTGATGTCTAGGAAAAGTCATGAA 57.991 36.000 0.00 0.00 0.00 2.57
6262 11654 6.611613 ACTGATGTCTAGGAAAAGTCATGA 57.388 37.500 0.00 0.00 0.00 3.07
6263 11655 7.551585 AGTACTGATGTCTAGGAAAAGTCATG 58.448 38.462 0.00 0.00 0.00 3.07
6264 11656 7.726033 AGTACTGATGTCTAGGAAAAGTCAT 57.274 36.000 0.00 0.00 0.00 3.06
6265 11657 7.232737 TGAAGTACTGATGTCTAGGAAAAGTCA 59.767 37.037 0.00 0.00 0.00 3.41
6266 11658 7.542824 GTGAAGTACTGATGTCTAGGAAAAGTC 59.457 40.741 0.00 0.00 0.00 3.01
6267 11659 7.233757 AGTGAAGTACTGATGTCTAGGAAAAGT 59.766 37.037 0.00 0.00 38.49 2.66
6268 11660 7.607250 AGTGAAGTACTGATGTCTAGGAAAAG 58.393 38.462 0.00 0.00 38.49 2.27
6269 11661 7.540474 AGTGAAGTACTGATGTCTAGGAAAA 57.460 36.000 0.00 0.00 38.49 2.29
6270 11662 8.107729 TCTAGTGAAGTACTGATGTCTAGGAAA 58.892 37.037 0.00 0.00 40.65 3.13
6271 11663 7.631007 TCTAGTGAAGTACTGATGTCTAGGAA 58.369 38.462 0.00 0.00 40.65 3.36
6272 11664 7.196637 TCTAGTGAAGTACTGATGTCTAGGA 57.803 40.000 0.00 0.00 40.65 2.94
6273 11665 7.867305 TTCTAGTGAAGTACTGATGTCTAGG 57.133 40.000 0.00 0.00 40.65 3.02
6274 11666 8.731605 TGTTTCTAGTGAAGTACTGATGTCTAG 58.268 37.037 0.00 5.50 40.65 2.43
6275 11667 8.631480 TGTTTCTAGTGAAGTACTGATGTCTA 57.369 34.615 0.00 0.00 40.65 2.59
6282 11674 6.338937 GGGGTATGTTTCTAGTGAAGTACTG 58.661 44.000 0.00 0.00 40.65 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.