Multiple sequence alignment - TraesCS5A01G060700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G060700 chr5A 100.000 7729 0 0 1 7729 64381452 64373724 0.000000e+00 14273.0
1 TraesCS5A01G060700 chr5A 92.709 2167 109 16 2571 4718 245959804 245957668 0.000000e+00 3081.0
2 TraesCS5A01G060700 chr5A 96.242 479 3 2 2572 3049 115024751 115024287 0.000000e+00 771.0
3 TraesCS5A01G060700 chr5A 99.112 338 3 0 4839 5176 64378882 64378545 6.630000e-170 608.0
4 TraesCS5A01G060700 chr5A 95.280 339 15 1 4839 5176 245959804 245959466 3.170000e-148 536.0
5 TraesCS5A01G060700 chr5A 82.110 218 33 6 4828 5042 484439677 484439463 1.710000e-41 182.0
6 TraesCS5A01G060700 chr5D 94.309 2126 81 25 5627 7729 71896426 71894318 0.000000e+00 3219.0
7 TraesCS5A01G060700 chr5D 88.153 2144 185 31 2571 4657 551309554 551311685 0.000000e+00 2488.0
8 TraesCS5A01G060700 chr5D 93.498 1615 92 8 963 2571 71899485 71897878 0.000000e+00 2388.0
9 TraesCS5A01G060700 chr5D 89.610 462 29 9 5171 5632 71897882 71897440 3.130000e-158 569.0
10 TraesCS5A01G060700 chr5D 95.029 342 10 5 1 335 71900628 71900287 1.480000e-146 531.0
11 TraesCS5A01G060700 chr5D 90.608 181 8 2 754 934 71899724 71899553 1.680000e-56 231.0
12 TraesCS5A01G060700 chr5D 83.178 214 32 4 4828 5039 168507421 168507632 7.920000e-45 193.0
13 TraesCS5A01G060700 chr5D 86.857 175 18 2 351 525 71900328 71900159 2.850000e-44 191.0
14 TraesCS5A01G060700 chr5D 94.624 93 2 1 652 744 71899883 71899794 2.910000e-29 141.0
15 TraesCS5A01G060700 chr5D 81.152 191 18 11 492 667 71900086 71899899 3.760000e-28 137.0
16 TraesCS5A01G060700 chr5D 95.833 48 2 0 439 486 491432613 491432660 2.310000e-10 78.7
17 TraesCS5A01G060700 chr5D 100.000 37 0 0 450 486 538438628 538438592 1.390000e-07 69.4
18 TraesCS5A01G060700 chr5D 100.000 34 0 0 492 525 71900139 71900106 6.480000e-06 63.9
19 TraesCS5A01G060700 chr5D 89.583 48 5 0 439 486 395175885 395175838 2.330000e-05 62.1
20 TraesCS5A01G060700 chr4D 89.719 2062 161 25 2575 4621 357411758 357413783 0.000000e+00 2586.0
21 TraesCS5A01G060700 chr4D 76.589 299 36 20 4325 4621 8609425 8609159 4.870000e-27 134.0
22 TraesCS5A01G060700 chr4D 95.833 48 2 0 439 486 98451630 98451677 2.310000e-10 78.7
23 TraesCS5A01G060700 chr4D 95.122 41 2 0 446 486 396175690 396175730 1.800000e-06 65.8
24 TraesCS5A01G060700 chr5B 94.139 1638 91 5 935 2571 82464314 82465947 0.000000e+00 2488.0
25 TraesCS5A01G060700 chr5B 92.111 1369 52 19 5826 7172 82467720 82469054 0.000000e+00 1879.0
26 TraesCS5A01G060700 chr5B 90.181 662 40 12 5171 5824 82465943 82466587 0.000000e+00 839.0
27 TraesCS5A01G060700 chr5B 88.184 694 54 17 1 667 82462557 82463249 0.000000e+00 802.0
28 TraesCS5A01G060700 chr5B 88.642 405 26 8 7327 7729 82469384 82469770 7.020000e-130 475.0
29 TraesCS5A01G060700 chr5B 87.755 196 12 5 648 841 82463262 82463447 1.310000e-52 219.0
30 TraesCS5A01G060700 chr5B 77.936 281 52 5 4333 4603 328208488 328208768 4.800000e-37 167.0
31 TraesCS5A01G060700 chr5B 91.000 100 7 1 834 931 82464175 82464274 4.870000e-27 134.0
32 TraesCS5A01G060700 chr5B 89.474 57 3 2 358 414 82462860 82462913 1.390000e-07 69.4
33 TraesCS5A01G060700 chr5B 89.583 48 5 0 439 486 668537170 668537217 2.330000e-05 62.1
34 TraesCS5A01G060700 chr4A 89.001 1591 128 20 2572 4147 563211694 563210136 0.000000e+00 1925.0
35 TraesCS5A01G060700 chr4A 78.629 992 150 42 2559 3509 138452378 138451408 1.110000e-167 601.0
36 TraesCS5A01G060700 chr4A 93.496 123 8 0 4716 4838 590222037 590222159 4.760000e-42 183.0
37 TraesCS5A01G060700 chr4A 83.562 146 13 7 4325 4460 563209970 563209826 8.140000e-25 126.0
38 TraesCS5A01G060700 chr4A 84.536 97 13 2 2571 2666 722840131 722840226 2.300000e-15 95.3
39 TraesCS5A01G060700 chr4A 95.833 48 2 0 439 486 477880072 477880025 2.310000e-10 78.7
40 TraesCS5A01G060700 chr4A 95.833 48 2 0 439 486 581944298 581944345 2.310000e-10 78.7
41 TraesCS5A01G060700 chr4A 78.195 133 21 7 4587 4718 729605021 729605146 2.310000e-10 78.7
42 TraesCS5A01G060700 chr4A 79.167 120 18 6 4599 4718 674440929 674441041 8.320000e-10 76.8
43 TraesCS5A01G060700 chr3D 87.384 1506 183 7 2598 4100 246591700 246590199 0.000000e+00 1722.0
44 TraesCS5A01G060700 chr3D 88.462 286 29 4 4332 4615 135246756 135246473 7.430000e-90 342.0
45 TraesCS5A01G060700 chr3D 88.018 217 18 7 4828 5039 182650096 182650309 4.630000e-62 250.0
46 TraesCS5A01G060700 chr3D 94.167 120 7 0 4715 4834 107671081 107670962 4.760000e-42 183.0
47 TraesCS5A01G060700 chr3D 81.651 218 34 6 4828 5042 135244357 135244143 7.970000e-40 176.0
48 TraesCS5A01G060700 chr1D 88.519 1411 149 8 2572 3980 228812243 228810844 0.000000e+00 1696.0
49 TraesCS5A01G060700 chr1D 87.696 1341 160 3 2809 4148 321681947 321680611 0.000000e+00 1557.0
50 TraesCS5A01G060700 chr1D 79.224 722 129 16 1463 2173 407216504 407215793 4.190000e-132 483.0
51 TraesCS5A01G060700 chr1D 92.188 128 6 4 4709 4834 470925368 470925493 2.220000e-40 178.0
52 TraesCS5A01G060700 chr1D 91.667 48 4 0 439 486 318133129 318133176 5.010000e-07 67.6
53 TraesCS5A01G060700 chr1D 89.583 48 5 0 439 486 411697278 411697231 2.330000e-05 62.1
54 TraesCS5A01G060700 chr1D 91.111 45 3 1 442 486 347276493 347276450 8.380000e-05 60.2
55 TraesCS5A01G060700 chr3B 85.456 1602 197 24 2571 4148 181308408 181306819 0.000000e+00 1635.0
56 TraesCS5A01G060700 chr3B 87.442 215 21 6 4828 5039 406544853 406545064 7.750000e-60 243.0
57 TraesCS5A01G060700 chr3B 94.118 119 5 2 4716 4833 52425386 52425269 6.160000e-41 180.0
58 TraesCS5A01G060700 chr3B 81.250 112 13 7 4608 4718 671570162 671570058 4.970000e-12 84.2
59 TraesCS5A01G060700 chr3B 97.674 43 1 0 444 486 59209606 59209564 2.990000e-09 75.0
60 TraesCS5A01G060700 chr6D 84.515 1608 190 37 2581 4148 143487759 143486171 0.000000e+00 1535.0
61 TraesCS5A01G060700 chr2D 87.579 1264 153 4 2886 4148 546809374 546810634 0.000000e+00 1461.0
62 TraesCS5A01G060700 chr2D 81.019 432 60 11 4287 4718 26935520 26935111 2.690000e-84 324.0
63 TraesCS5A01G060700 chr2D 78.313 332 58 10 4344 4664 194443368 194443040 1.320000e-47 202.0
64 TraesCS5A01G060700 chr6A 95.694 627 26 1 2572 3197 489858455 489857829 0.000000e+00 1007.0
65 TraesCS5A01G060700 chr6A 84.243 806 49 23 3958 4718 565416531 565417303 0.000000e+00 713.0
66 TraesCS5A01G060700 chr6A 95.858 338 13 1 4840 5176 489858455 489858118 5.270000e-151 545.0
67 TraesCS5A01G060700 chr6A 94.412 340 17 2 4832 5170 565417301 565417639 8.890000e-144 521.0
68 TraesCS5A01G060700 chr6A 93.824 340 20 1 4832 5170 489842931 489842592 1.920000e-140 510.0
69 TraesCS5A01G060700 chr6A 78.671 286 47 9 4325 4600 33200434 33200715 2.220000e-40 178.0
70 TraesCS5A01G060700 chr6A 93.750 48 3 0 439 486 435875715 435875762 1.080000e-08 73.1
71 TraesCS5A01G060700 chr3A 95.894 341 12 2 4832 5170 160079309 160079649 1.130000e-152 551.0
72 TraesCS5A01G060700 chr3A 95.238 336 14 2 4837 5170 160077166 160077501 1.480000e-146 531.0
73 TraesCS5A01G060700 chr3A 85.591 347 37 4 4322 4657 160078936 160079280 1.230000e-92 351.0
74 TraesCS5A01G060700 chr3A 81.271 299 47 1 4332 4621 44234420 44234718 4.660000e-57 233.0
75 TraesCS5A01G060700 chr3A 99.153 118 1 0 4716 4833 511745303 511745186 6.080000e-51 213.0
76 TraesCS5A01G060700 chr3A 80.591 237 39 7 4828 5061 535187358 535187590 7.970000e-40 176.0
77 TraesCS5A01G060700 chr2A 94.985 339 15 2 4840 5176 690313278 690312940 1.480000e-146 531.0
78 TraesCS5A01G060700 chr2A 94.169 343 17 3 4832 5171 690311199 690310857 3.200000e-143 520.0
79 TraesCS5A01G060700 chr2A 87.685 203 25 0 4397 4599 520560634 520560836 3.610000e-58 237.0
80 TraesCS5A01G060700 chr2A 96.154 52 2 0 439 490 745788408 745788459 1.380000e-12 86.1
81 TraesCS5A01G060700 chr1A 79.661 649 124 7 1519 2165 502831623 502830981 1.970000e-125 460.0
82 TraesCS5A01G060700 chr1A 87.107 318 37 4 6448 6764 502829449 502829135 2.650000e-94 357.0
83 TraesCS5A01G060700 chr1A 81.481 216 32 8 4828 5039 103630419 103630630 3.710000e-38 171.0
84 TraesCS5A01G060700 chr1B 79.801 604 119 3 1563 2165 547586559 547585958 3.310000e-118 436.0
85 TraesCS5A01G060700 chr1B 86.025 322 43 2 6448 6769 547584538 547584219 2.060000e-90 344.0
86 TraesCS5A01G060700 chr1B 79.699 133 19 7 4587 4718 57107138 57107263 1.070000e-13 89.8
87 TraesCS5A01G060700 chr1B 79.104 134 18 9 4587 4718 328150512 328150637 4.970000e-12 84.2
88 TraesCS5A01G060700 chr1B 78.947 133 19 8 4587 4718 289086167 289086291 1.790000e-11 82.4
89 TraesCS5A01G060700 chr2B 89.286 168 13 5 2571 2735 107559758 107559593 1.020000e-48 206.0
90 TraesCS5A01G060700 chr2B 90.152 132 9 4 4704 4833 412778707 412778578 1.330000e-37 169.0
91 TraesCS5A01G060700 chr6B 82.857 210 26 9 4838 5042 233692148 233691944 6.160000e-41 180.0
92 TraesCS5A01G060700 chr6B 78.947 133 20 7 4587 4718 395670654 395670529 4.970000e-12 84.2
93 TraesCS5A01G060700 chr6B 82.759 87 9 5 4631 4717 594865303 594865223 1.080000e-08 73.1
94 TraesCS5A01G060700 chr6B 90.385 52 5 0 4666 4717 284658035 284657984 1.390000e-07 69.4
95 TraesCS5A01G060700 chr6B 97.436 39 1 0 446 484 474441116 474441078 5.010000e-07 67.6
96 TraesCS5A01G060700 chr4B 92.126 127 8 2 4709 4834 564869592 564869467 2.220000e-40 178.0
97 TraesCS5A01G060700 chr4B 78.879 232 34 9 4332 4551 498836783 498836555 8.090000e-30 143.0
98 TraesCS5A01G060700 chr4B 97.917 48 1 0 439 486 139763291 139763338 4.970000e-12 84.2
99 TraesCS5A01G060700 chr4B 79.487 117 17 6 4602 4718 73278380 73278271 8.320000e-10 76.8
100 TraesCS5A01G060700 chr4B 88.679 53 6 0 4666 4718 25898833 25898885 1.800000e-06 65.8
101 TraesCS5A01G060700 chr7D 93.277 119 8 0 4716 4834 31949675 31949793 7.970000e-40 176.0
102 TraesCS5A01G060700 chr7B 93.333 120 6 2 4716 4834 143329397 143329515 7.970000e-40 176.0
103 TraesCS5A01G060700 chr7B 79.699 133 19 7 4587 4718 458785742 458785867 1.070000e-13 89.8
104 TraesCS5A01G060700 chr7B 95.918 49 2 0 438 486 612304321 612304369 6.430000e-11 80.5
105 TraesCS5A01G060700 chr7A 81.395 215 34 6 4828 5039 13232524 13232735 3.710000e-38 171.0
106 TraesCS5A01G060700 chr7A 97.917 48 1 0 439 486 97912716 97912669 4.970000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G060700 chr5A 64373724 64381452 7728 True 7440.500000 14273 99.55600 1 7729 2 chr5A.!!$R3 7728
1 TraesCS5A01G060700 chr5A 245957668 245959804 2136 True 1808.500000 3081 93.99450 2571 5176 2 chr5A.!!$R4 2605
2 TraesCS5A01G060700 chr5D 551309554 551311685 2131 False 2488.000000 2488 88.15300 2571 4657 1 chr5D.!!$F3 2086
3 TraesCS5A01G060700 chr5D 71894318 71900628 6310 True 830.100000 3219 91.74300 1 7729 9 chr5D.!!$R3 7728
4 TraesCS5A01G060700 chr4D 357411758 357413783 2025 False 2586.000000 2586 89.71900 2575 4621 1 chr4D.!!$F2 2046
5 TraesCS5A01G060700 chr5B 82462557 82469770 7213 False 863.175000 2488 90.18575 1 7729 8 chr5B.!!$F3 7728
6 TraesCS5A01G060700 chr4A 563209826 563211694 1868 True 1025.500000 1925 86.28150 2572 4460 2 chr4A.!!$R3 1888
7 TraesCS5A01G060700 chr4A 138451408 138452378 970 True 601.000000 601 78.62900 2559 3509 1 chr4A.!!$R1 950
8 TraesCS5A01G060700 chr3D 246590199 246591700 1501 True 1722.000000 1722 87.38400 2598 4100 1 chr3D.!!$R2 1502
9 TraesCS5A01G060700 chr3D 135244143 135246756 2613 True 259.000000 342 85.05650 4332 5042 2 chr3D.!!$R3 710
10 TraesCS5A01G060700 chr1D 228810844 228812243 1399 True 1696.000000 1696 88.51900 2572 3980 1 chr1D.!!$R1 1408
11 TraesCS5A01G060700 chr1D 321680611 321681947 1336 True 1557.000000 1557 87.69600 2809 4148 1 chr1D.!!$R2 1339
12 TraesCS5A01G060700 chr1D 407215793 407216504 711 True 483.000000 483 79.22400 1463 2173 1 chr1D.!!$R4 710
13 TraesCS5A01G060700 chr3B 181306819 181308408 1589 True 1635.000000 1635 85.45600 2571 4148 1 chr3B.!!$R3 1577
14 TraesCS5A01G060700 chr6D 143486171 143487759 1588 True 1535.000000 1535 84.51500 2581 4148 1 chr6D.!!$R1 1567
15 TraesCS5A01G060700 chr2D 546809374 546810634 1260 False 1461.000000 1461 87.57900 2886 4148 1 chr2D.!!$F1 1262
16 TraesCS5A01G060700 chr6A 489857829 489858455 626 True 776.000000 1007 95.77600 2572 5176 2 chr6A.!!$R2 2604
17 TraesCS5A01G060700 chr6A 565416531 565417639 1108 False 617.000000 713 89.32750 3958 5170 2 chr6A.!!$F3 1212
18 TraesCS5A01G060700 chr3A 160077166 160079649 2483 False 477.666667 551 92.24100 4322 5170 3 chr3A.!!$F3 848
19 TraesCS5A01G060700 chr2A 690310857 690313278 2421 True 525.500000 531 94.57700 4832 5176 2 chr2A.!!$R1 344
20 TraesCS5A01G060700 chr1A 502829135 502831623 2488 True 408.500000 460 83.38400 1519 6764 2 chr1A.!!$R1 5245
21 TraesCS5A01G060700 chr1B 547584219 547586559 2340 True 390.000000 436 82.91300 1563 6769 2 chr1B.!!$R1 5206

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
313 319 0.099436 CAAGTGCTTGCGCCCTATTC 59.901 55.0 4.18 0.00 33.45 1.75 F
315 321 0.107017 AGTGCTTGCGCCCTATTCAT 60.107 50.0 4.18 0.00 34.43 2.57 F
871 1890 0.178891 AGGGAGAAGGAAGAGGCACA 60.179 55.0 0.00 0.00 0.00 4.57 F
873 1892 0.390472 GGAGAAGGAAGAGGCACACG 60.390 60.0 0.00 0.00 0.00 4.49 F
1648 2722 0.458197 CTTGACGAGCCAGCTCTCTG 60.458 60.0 17.06 4.95 40.69 3.35 F
2428 3510 0.512952 GCGCATGCTTCTTATACGGG 59.487 55.0 17.13 0.00 38.39 5.28 F
3853 5016 0.250081 GAAGAGGATGATGCCGGGTC 60.250 60.0 2.18 0.00 0.00 4.46 F
3975 5138 0.031917 TTCCCCGGCCATAGTGTAGA 60.032 55.0 2.24 0.00 0.00 2.59 F
4446 5609 0.105039 CAAGTACAGCCGGATCTCCC 59.895 60.0 5.05 0.00 0.00 4.30 F
5368 8959 0.107654 GATAGGAAGGCTTGGCACGT 60.108 55.0 3.46 0.00 0.00 4.49 F
5376 8967 0.382515 GGCTTGGCACGTGTTTAACA 59.617 50.0 18.38 6.20 0.00 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1673 2747 0.389426 ACACAAGTCGGCGGTATCAC 60.389 55.000 7.21 0.0 0.00 3.06 R
2305 3387 0.394899 CCTCCTGATGGCACCCTTTC 60.395 60.000 0.00 0.0 0.00 2.62 R
2592 3675 1.048724 CAATCTCCGCCCTAGACCCA 61.049 60.000 0.00 0.0 0.00 4.51 R
2843 3999 2.158460 GGCCTGGCCCAGTTATCTTATT 60.158 50.000 27.77 0.0 44.06 1.40 R
3638 4801 0.105039 CCTCTTATCACCTCCGTGGC 59.895 60.000 0.00 0.0 40.65 5.01 R
3956 5119 0.031917 TCTACACTATGGCCGGGGAA 60.032 55.000 2.18 0.0 0.00 3.97 R
5349 8940 0.107654 ACGTGCCAAGCCTTCCTATC 60.108 55.000 0.00 0.0 0.00 2.08 R
5357 8948 0.382515 TGTTAAACACGTGCCAAGCC 59.617 50.000 17.22 0.0 0.00 4.35 R
5838 11602 1.202290 CCAACGCATTGTAGGGCATTC 60.202 52.381 0.00 0.0 33.60 2.67 R
6466 12406 0.108945 GGCATCAAGAGGCTGCAAAC 60.109 55.000 6.67 0.0 38.32 2.93 R
7064 13017 0.524862 CTTCAGCCTGCAACACATCC 59.475 55.000 0.00 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
182 187 4.470334 AGTTGTTTTTCACATTGCCAGT 57.530 36.364 0.00 0.00 34.43 4.00
240 245 8.830580 CATACAGGAGTACAACATTTGGATAAG 58.169 37.037 0.00 0.00 31.96 1.73
249 254 4.396357 ACATTTGGATAAGTTGTGGGGA 57.604 40.909 0.00 0.00 0.00 4.81
272 278 3.747099 ATGTTCTTATCAACTGCGTGC 57.253 42.857 0.00 0.00 0.00 5.34
293 299 6.303970 CGTGCTCATTTTTGTTTCACTATGAG 59.696 38.462 0.00 0.00 41.03 2.90
300 306 4.488126 TTGTTTCACTATGAGCAAGTGC 57.512 40.909 0.00 0.00 43.30 4.40
311 317 3.909662 CAAGTGCTTGCGCCCTAT 58.090 55.556 4.18 0.00 33.45 2.57
312 318 2.183409 CAAGTGCTTGCGCCCTATT 58.817 52.632 4.18 0.00 33.45 1.73
313 319 0.099436 CAAGTGCTTGCGCCCTATTC 59.901 55.000 4.18 0.00 33.45 1.75
314 320 0.322456 AAGTGCTTGCGCCCTATTCA 60.322 50.000 4.18 0.00 34.43 2.57
315 321 0.107017 AGTGCTTGCGCCCTATTCAT 60.107 50.000 4.18 0.00 34.43 2.57
316 322 1.140852 AGTGCTTGCGCCCTATTCATA 59.859 47.619 4.18 0.00 34.43 2.15
317 323 1.946768 GTGCTTGCGCCCTATTCATAA 59.053 47.619 4.18 0.00 34.43 1.90
318 324 2.031682 GTGCTTGCGCCCTATTCATAAG 60.032 50.000 4.18 0.00 34.43 1.73
319 325 2.222027 GCTTGCGCCCTATTCATAAGT 58.778 47.619 4.18 0.00 0.00 2.24
320 326 2.618709 GCTTGCGCCCTATTCATAAGTT 59.381 45.455 4.18 0.00 0.00 2.66
321 327 3.304057 GCTTGCGCCCTATTCATAAGTTC 60.304 47.826 4.18 0.00 0.00 3.01
322 328 3.838244 TGCGCCCTATTCATAAGTTCT 57.162 42.857 4.18 0.00 0.00 3.01
323 329 3.728845 TGCGCCCTATTCATAAGTTCTC 58.271 45.455 4.18 0.00 0.00 2.87
324 330 3.133901 TGCGCCCTATTCATAAGTTCTCA 59.866 43.478 4.18 0.00 0.00 3.27
325 331 4.127171 GCGCCCTATTCATAAGTTCTCAA 58.873 43.478 0.00 0.00 0.00 3.02
326 332 4.212214 GCGCCCTATTCATAAGTTCTCAAG 59.788 45.833 0.00 0.00 0.00 3.02
327 333 4.752101 CGCCCTATTCATAAGTTCTCAAGG 59.248 45.833 0.00 0.00 0.00 3.61
328 334 5.066593 GCCCTATTCATAAGTTCTCAAGGG 58.933 45.833 0.00 0.00 43.38 3.95
329 335 5.066593 CCCTATTCATAAGTTCTCAAGGGC 58.933 45.833 0.00 0.00 35.11 5.19
330 336 5.397899 CCCTATTCATAAGTTCTCAAGGGCA 60.398 44.000 0.00 0.00 35.11 5.36
331 337 5.529060 CCTATTCATAAGTTCTCAAGGGCAC 59.471 44.000 0.00 0.00 0.00 5.01
343 349 2.106332 GGGCACCGAGATACACCG 59.894 66.667 0.00 0.00 40.86 4.94
344 350 2.718073 GGGCACCGAGATACACCGT 61.718 63.158 0.00 0.00 40.86 4.83
345 351 1.386525 GGGCACCGAGATACACCGTA 61.387 60.000 0.00 0.00 40.86 4.02
346 352 0.248784 GGCACCGAGATACACCGTAC 60.249 60.000 0.00 0.00 0.00 3.67
347 353 0.452987 GCACCGAGATACACCGTACA 59.547 55.000 0.00 0.00 0.00 2.90
348 354 1.796617 GCACCGAGATACACCGTACAC 60.797 57.143 0.00 0.00 0.00 2.90
349 355 0.729116 ACCGAGATACACCGTACACG 59.271 55.000 0.00 0.00 39.44 4.49
350 356 1.009078 CCGAGATACACCGTACACGA 58.991 55.000 2.76 0.00 43.02 4.35
351 357 1.004185 CCGAGATACACCGTACACGAG 60.004 57.143 2.76 0.00 43.02 4.18
352 358 1.662629 CGAGATACACCGTACACGAGT 59.337 52.381 2.76 4.39 43.02 4.18
353 359 2.536329 CGAGATACACCGTACACGAGTG 60.536 54.545 16.54 16.54 43.02 3.51
354 360 1.741706 AGATACACCGTACACGAGTGG 59.258 52.381 19.95 0.00 41.46 4.00
355 361 1.739466 GATACACCGTACACGAGTGGA 59.261 52.381 19.95 15.25 41.46 4.02
364 370 1.509787 CACGAGTGGATTTTGCGCG 60.510 57.895 0.00 0.00 0.00 6.86
410 478 2.979151 CGACGAACGTACCATACACAAA 59.021 45.455 0.00 0.00 37.22 2.83
415 483 4.209703 CGAACGTACCATACACAAAGTGTT 59.790 41.667 8.20 0.00 45.08 3.32
434 502 3.517901 TGTTCGTTCCATCATACTCCCTT 59.482 43.478 0.00 0.00 0.00 3.95
435 503 3.819564 TCGTTCCATCATACTCCCTTG 57.180 47.619 0.00 0.00 0.00 3.61
447 515 8.748412 CATCATACTCCCTTGGTTTCAAATTTA 58.252 33.333 0.00 0.00 31.77 1.40
473 541 7.556733 ACTAAAACCACGACAAGTATTTTGA 57.443 32.000 0.00 0.00 34.30 2.69
482 550 4.378046 CGACAAGTATTTTGAAACGGAGGG 60.378 45.833 0.00 0.00 0.00 4.30
486 554 4.576879 AGTATTTTGAAACGGAGGGAGTC 58.423 43.478 0.00 0.00 0.00 3.36
487 555 1.873698 TTTTGAAACGGAGGGAGTCG 58.126 50.000 0.00 0.00 0.00 4.18
488 556 0.601841 TTTGAAACGGAGGGAGTCGC 60.602 55.000 0.00 0.00 0.00 5.19
489 557 2.125633 GAAACGGAGGGAGTCGCC 60.126 66.667 3.13 0.00 0.00 5.54
562 736 8.324191 ACAAGATCTTTATATCCCTTGTCTGA 57.676 34.615 4.86 0.00 39.72 3.27
565 739 8.733092 AGATCTTTATATCCCTTGTCTGATCA 57.267 34.615 0.00 0.00 31.85 2.92
566 740 9.163894 AGATCTTTATATCCCTTGTCTGATCAA 57.836 33.333 0.00 0.00 31.85 2.57
570 744 8.696043 TTTATATCCCTTGTCTGATCAAATGG 57.304 34.615 0.00 0.00 0.00 3.16
571 745 4.598036 ATCCCTTGTCTGATCAAATGGT 57.402 40.909 0.00 0.00 0.00 3.55
575 749 4.768968 CCCTTGTCTGATCAAATGGTTCTT 59.231 41.667 0.00 0.00 0.00 2.52
576 750 5.105997 CCCTTGTCTGATCAAATGGTTCTTC 60.106 44.000 0.00 0.00 0.00 2.87
577 751 5.391310 CCTTGTCTGATCAAATGGTTCTTCG 60.391 44.000 0.00 0.00 0.00 3.79
579 753 5.789521 TGTCTGATCAAATGGTTCTTCGTA 58.210 37.500 0.00 0.00 0.00 3.43
580 754 5.869344 TGTCTGATCAAATGGTTCTTCGTAG 59.131 40.000 0.00 0.00 0.00 3.51
585 774 6.485313 TGATCAAATGGTTCTTCGTAGTTTGT 59.515 34.615 0.00 0.00 0.00 2.83
591 780 6.092955 TGGTTCTTCGTAGTTTGTAGTGAT 57.907 37.500 0.00 0.00 0.00 3.06
604 793 8.918202 AGTTTGTAGTGATTTAGAAATGGTCA 57.082 30.769 0.00 0.00 0.00 4.02
616 805 8.519799 TTTAGAAATGGTCATCTGGGAAATAC 57.480 34.615 0.00 0.00 0.00 1.89
642 832 9.566624 CTAATATTTTTGTTTTCAAGCGTGTTG 57.433 29.630 0.00 0.00 41.09 3.33
643 833 4.653806 TTTTTGTTTTCAAGCGTGTTGG 57.346 36.364 0.00 0.00 41.09 3.77
680 902 3.721087 ACGGAATGGAGAAGACCAAAT 57.279 42.857 0.00 0.00 43.47 2.32
715 937 6.663093 TGATGGTTTGTAATTAAGCTGGTGAT 59.337 34.615 0.00 0.00 0.00 3.06
716 938 6.266168 TGGTTTGTAATTAAGCTGGTGATG 57.734 37.500 0.00 0.00 0.00 3.07
717 939 6.007076 TGGTTTGTAATTAAGCTGGTGATGA 58.993 36.000 0.00 0.00 0.00 2.92
722 944 6.341316 TGTAATTAAGCTGGTGATGACTCTC 58.659 40.000 0.00 0.00 0.00 3.20
752 1034 8.693625 TCATGTATGCAAAATTCCATCATACAA 58.306 29.630 18.22 7.80 46.81 2.41
871 1890 0.178891 AGGGAGAAGGAAGAGGCACA 60.179 55.000 0.00 0.00 0.00 4.57
873 1892 0.390472 GGAGAAGGAAGAGGCACACG 60.390 60.000 0.00 0.00 0.00 4.49
874 1893 1.004440 AGAAGGAAGAGGCACACGC 60.004 57.895 0.00 0.00 37.44 5.34
905 1924 2.290323 CCTCCACAGAAGAAAATCCGGT 60.290 50.000 0.00 0.00 0.00 5.28
978 2047 2.985456 CCGCTTCTGGCTCCTCTT 59.015 61.111 0.00 0.00 39.13 2.85
990 2059 1.843206 GCTCCTCTTCCATTCTTCCCT 59.157 52.381 0.00 0.00 0.00 4.20
1104 2174 3.292159 GTGCGTGGGGGTTGGAAC 61.292 66.667 0.00 0.00 0.00 3.62
1174 2244 2.435938 GCGGAATCTGCAACCCGA 60.436 61.111 9.52 0.00 44.29 5.14
1178 2248 0.608035 GGAATCTGCAACCCGACCAA 60.608 55.000 0.00 0.00 0.00 3.67
1247 2317 1.594034 CCGTACGATGTGTAGCTCGAC 60.594 57.143 18.76 0.00 38.24 4.20
1251 2321 1.810755 ACGATGTGTAGCTCGACAAGA 59.189 47.619 0.00 0.00 38.24 3.02
1266 2336 1.470098 ACAAGAGATGGATTGCGCAAC 59.530 47.619 27.64 18.56 0.00 4.17
1309 2379 1.408683 GCCATTGGTGATGTAGCCTCA 60.409 52.381 4.26 0.00 33.71 3.86
1330 2400 1.168407 TCAGCCACAAAGCTCAGCAC 61.168 55.000 0.00 0.00 42.61 4.40
1418 2489 2.614829 AACTGTACCTCGTTTGCAGT 57.385 45.000 0.00 0.00 41.51 4.40
1448 2519 5.550290 AGGAAAATTGTTTGCACATTAGGG 58.450 37.500 0.00 0.00 37.52 3.53
1470 2541 3.737972 GCATGCCATACTTTTTAGGTGCC 60.738 47.826 6.36 0.00 0.00 5.01
1509 2583 5.164954 GTGTGCTTTTGTTCCAAGTTGTTA 58.835 37.500 1.45 0.00 0.00 2.41
1537 2611 9.950680 ATACAGTATTTTGTTGACAAGTTTCTG 57.049 29.630 13.79 13.79 37.15 3.02
1581 2655 2.199291 GCAGCCAGCAATATGTCAAC 57.801 50.000 0.00 0.00 44.79 3.18
1648 2722 0.458197 CTTGACGAGCCAGCTCTCTG 60.458 60.000 17.06 4.95 40.69 3.35
1650 2724 1.311651 TGACGAGCCAGCTCTCTGAG 61.312 60.000 17.06 0.00 42.95 3.35
1673 2747 2.587956 TCGTGAATTGACCGAAGTACG 58.412 47.619 0.00 0.00 42.18 3.67
1681 2755 1.398041 TGACCGAAGTACGTGATACCG 59.602 52.381 0.00 0.00 40.78 4.02
1683 2757 0.593263 CCGAAGTACGTGATACCGCC 60.593 60.000 0.00 0.00 40.78 6.13
1755 2829 0.955428 TGAATCGTCAGCTGGTTGGC 60.955 55.000 15.13 0.21 0.00 4.52
1855 2929 2.838736 ACGATGCCAATCTGGTGATAC 58.161 47.619 0.00 0.00 40.46 2.24
1972 3054 6.040247 TCAACTATGGTACTACTCATTTGCG 58.960 40.000 0.00 0.00 0.00 4.85
1980 3062 4.928661 ACTACTCATTTGCGTCATGTTC 57.071 40.909 0.00 0.00 0.00 3.18
1982 3064 3.542712 ACTCATTTGCGTCATGTTCAC 57.457 42.857 0.00 0.00 0.00 3.18
1985 3067 4.036734 ACTCATTTGCGTCATGTTCACTTT 59.963 37.500 0.00 0.00 0.00 2.66
1995 3077 6.237808 GCGTCATGTTCACTTTCATTTTTGTT 60.238 34.615 0.00 0.00 0.00 2.83
1996 3078 7.112397 CGTCATGTTCACTTTCATTTTTGTTG 58.888 34.615 0.00 0.00 0.00 3.33
2009 3091 7.059448 TCATTTTTGTTGTGCAGTTTTTCTC 57.941 32.000 0.00 0.00 0.00 2.87
2108 3190 1.329906 GATCTCAAGCCAAGCACATCG 59.670 52.381 0.00 0.00 0.00 3.84
2231 3313 1.349688 ACCCGAAGCATAGGTCAAACA 59.650 47.619 0.00 0.00 0.00 2.83
2305 3387 1.531423 ACTGTCAAGGCTGCAAGATG 58.469 50.000 0.50 0.00 34.07 2.90
2338 3420 3.642141 TCAGGAGGCCCATTAAATTTCC 58.358 45.455 0.00 0.00 33.88 3.13
2428 3510 0.512952 GCGCATGCTTCTTATACGGG 59.487 55.000 17.13 0.00 38.39 5.28
2487 3570 7.229907 TGTTCTCAATTTGGGTAAACTAGTTCC 59.770 37.037 8.95 6.69 0.00 3.62
2508 3591 8.478877 AGTTCCTGTAGATATTTGAAGTACTGG 58.521 37.037 0.00 0.00 35.25 4.00
2538 3621 9.231297 GTGTTCTGGTGGTTATATGCATATTAT 57.769 33.333 23.71 5.08 0.00 1.28
2569 3652 3.876914 TGGATATTGAACAACGCATCCTC 59.123 43.478 17.47 3.05 34.34 3.71
2592 3675 6.559429 TCTTGGTAGAAACTAGGGTTCTACT 58.441 40.000 29.15 10.65 36.90 2.57
2915 4076 3.042682 TCATAACATTTCTCCCCGCCTA 58.957 45.455 0.00 0.00 0.00 3.93
3542 4705 3.900892 CGGCTCCTGCGTATCGGT 61.901 66.667 0.00 0.00 40.82 4.69
3543 4706 2.279517 GGCTCCTGCGTATCGGTG 60.280 66.667 0.00 0.00 40.82 4.94
3573 4736 4.135153 GGAGGCAGAGCTCGCGAA 62.135 66.667 11.33 0.00 0.00 4.70
3638 4801 4.710695 TACCACGTCTGTGCGGCG 62.711 66.667 0.51 0.51 45.04 6.46
3659 4822 2.116383 ACGGAGGTGATAAGAGGCG 58.884 57.895 0.00 0.00 0.00 5.52
3683 4846 4.338539 GTGCGGTCCGACACGAGT 62.339 66.667 17.49 0.00 0.00 4.18
3684 4847 4.337060 TGCGGTCCGACACGAGTG 62.337 66.667 17.49 1.13 0.00 3.51
3695 4858 4.309950 ACGAGTGTCCGTTGCCCC 62.310 66.667 0.00 0.00 40.17 5.80
3724 4887 2.787249 CTCGCATTGGTTGAGCCG 59.213 61.111 0.00 0.00 41.21 5.52
3739 4902 2.933834 CCGGTTGAGGGGGTCCTT 60.934 66.667 0.00 0.00 45.05 3.36
3840 5003 3.458163 TACGGGGCAGCGAAGAGG 61.458 66.667 0.00 0.00 0.00 3.69
3853 5016 0.250081 GAAGAGGATGATGCCGGGTC 60.250 60.000 2.18 0.00 0.00 4.46
3882 5045 3.572222 GGGGTCCCCCGTGAAACA 61.572 66.667 17.45 0.00 46.66 2.83
3883 5046 2.516909 GGGTCCCCCGTGAAACAA 59.483 61.111 0.00 0.00 35.74 2.83
3894 5057 1.144276 TGAAACAACGGTCCTGCGA 59.856 52.632 0.00 0.00 0.00 5.10
3946 5109 4.778143 GCCGTACTGCAGGGTGGG 62.778 72.222 19.93 14.15 34.46 4.61
3947 5110 4.778143 CCGTACTGCAGGGTGGGC 62.778 72.222 19.93 0.25 0.00 5.36
3967 5130 4.733542 CGGTTGTTCCCCGGCCAT 62.734 66.667 2.24 0.00 41.78 4.40
3968 5131 2.678470 GGTTGTTCCCCGGCCATA 59.322 61.111 2.24 0.00 0.00 2.74
3969 5132 1.453197 GGTTGTTCCCCGGCCATAG 60.453 63.158 2.24 0.00 0.00 2.23
3970 5133 1.301954 GTTGTTCCCCGGCCATAGT 59.698 57.895 2.24 0.00 0.00 2.12
3971 5134 1.029947 GTTGTTCCCCGGCCATAGTG 61.030 60.000 2.24 0.00 0.00 2.74
3972 5135 1.493854 TTGTTCCCCGGCCATAGTGT 61.494 55.000 2.24 0.00 0.00 3.55
3973 5136 0.618107 TGTTCCCCGGCCATAGTGTA 60.618 55.000 2.24 0.00 0.00 2.90
3974 5137 0.106149 GTTCCCCGGCCATAGTGTAG 59.894 60.000 2.24 0.00 0.00 2.74
3975 5138 0.031917 TTCCCCGGCCATAGTGTAGA 60.032 55.000 2.24 0.00 0.00 2.59
3976 5139 0.757935 TCCCCGGCCATAGTGTAGAC 60.758 60.000 2.24 0.00 0.00 2.59
3977 5140 1.746517 CCCGGCCATAGTGTAGACC 59.253 63.158 2.24 0.00 0.00 3.85
3978 5141 1.362717 CCGGCCATAGTGTAGACCG 59.637 63.158 2.24 0.00 40.30 4.79
3979 5142 1.362717 CGGCCATAGTGTAGACCGG 59.637 63.158 2.24 0.00 37.04 5.28
3980 5143 1.389609 CGGCCATAGTGTAGACCGGT 61.390 60.000 6.92 6.92 37.04 5.28
3981 5144 0.828677 GGCCATAGTGTAGACCGGTT 59.171 55.000 9.42 0.87 0.00 4.44
3982 5145 1.472728 GGCCATAGTGTAGACCGGTTG 60.473 57.143 9.42 0.00 0.00 3.77
3983 5146 1.206371 GCCATAGTGTAGACCGGTTGT 59.794 52.381 9.42 1.19 0.00 3.32
3984 5147 2.888594 CCATAGTGTAGACCGGTTGTG 58.111 52.381 9.42 0.00 0.00 3.33
3985 5148 2.418197 CCATAGTGTAGACCGGTTGTGG 60.418 54.545 9.42 5.73 0.00 4.17
3986 5149 0.604578 TAGTGTAGACCGGTTGTGGC 59.395 55.000 9.42 0.00 0.00 5.01
3987 5150 2.025418 GTGTAGACCGGTTGTGGCG 61.025 63.158 9.42 0.00 0.00 5.69
3988 5151 2.341176 GTAGACCGGTTGTGGCGT 59.659 61.111 9.42 0.00 0.00 5.68
3989 5152 1.735559 GTAGACCGGTTGTGGCGTC 60.736 63.158 9.42 0.00 0.00 5.19
3990 5153 3.271706 TAGACCGGTTGTGGCGTCG 62.272 63.158 9.42 0.00 0.00 5.12
3991 5154 4.651008 GACCGGTTGTGGCGTCGA 62.651 66.667 9.42 0.00 0.00 4.20
3992 5155 4.955774 ACCGGTTGTGGCGTCGAC 62.956 66.667 0.00 5.18 0.00 4.20
4031 5194 4.016706 GGTGACGGTGAGGGTGGG 62.017 72.222 0.00 0.00 0.00 4.61
4032 5195 2.920912 GTGACGGTGAGGGTGGGA 60.921 66.667 0.00 0.00 0.00 4.37
4033 5196 2.122769 TGACGGTGAGGGTGGGAA 60.123 61.111 0.00 0.00 0.00 3.97
4034 5197 2.346365 GACGGTGAGGGTGGGAAC 59.654 66.667 0.00 0.00 0.00 3.62
4047 5210 3.319198 GGAACCGGACCTGCTGGA 61.319 66.667 17.64 0.00 46.81 3.86
4048 5211 2.670148 GGAACCGGACCTGCTGGAT 61.670 63.158 17.64 0.21 46.81 3.41
4049 5212 1.153349 GAACCGGACCTGCTGGATC 60.153 63.158 17.64 9.78 46.81 3.36
4050 5213 2.907897 GAACCGGACCTGCTGGATCG 62.908 65.000 17.64 17.31 46.81 3.69
4051 5214 4.227134 CCGGACCTGCTGGATCGG 62.227 72.222 24.06 24.06 46.81 4.18
4052 5215 3.147595 CGGACCTGCTGGATCGGA 61.148 66.667 17.64 0.00 37.04 4.55
4053 5216 2.721167 CGGACCTGCTGGATCGGAA 61.721 63.158 17.64 0.00 37.04 4.30
4054 5217 1.153349 GGACCTGCTGGATCGGAAC 60.153 63.158 17.64 0.00 37.04 3.62
4055 5218 1.519455 GACCTGCTGGATCGGAACG 60.519 63.158 17.64 0.00 45.92 3.95
4056 5219 2.892425 CCTGCTGGATCGGAACGC 60.892 66.667 2.92 0.00 44.90 4.84
4159 5322 3.207669 GGCGGGATGAAGCTGCAG 61.208 66.667 10.11 10.11 0.00 4.41
4160 5323 3.885521 GCGGGATGAAGCTGCAGC 61.886 66.667 31.53 31.53 42.49 5.25
4180 5343 2.827190 CTGCTGCATGTGGGCGAT 60.827 61.111 1.31 0.00 36.28 4.58
4181 5344 3.120979 CTGCTGCATGTGGGCGATG 62.121 63.158 1.31 0.00 36.28 3.84
4182 5345 3.896133 GCTGCATGTGGGCGATGG 61.896 66.667 0.00 0.00 36.28 3.51
4183 5346 3.214123 CTGCATGTGGGCGATGGG 61.214 66.667 0.00 0.00 36.28 4.00
4221 5384 2.278596 CCGTCGATGGCCACTACG 60.279 66.667 22.83 22.83 0.00 3.51
4222 5385 2.278596 CGTCGATGGCCACTACGG 60.279 66.667 22.31 8.79 38.11 4.02
4231 5394 2.505982 CCACTACGGCCAGATGGG 59.494 66.667 2.24 0.00 40.85 4.00
4232 5395 2.505982 CACTACGGCCAGATGGGG 59.494 66.667 2.24 0.00 37.04 4.96
4233 5396 2.768344 ACTACGGCCAGATGGGGG 60.768 66.667 2.24 0.00 37.04 5.40
4234 5397 2.768344 CTACGGCCAGATGGGGGT 60.768 66.667 2.24 0.00 37.04 4.95
4235 5398 3.087253 TACGGCCAGATGGGGGTG 61.087 66.667 2.24 0.00 37.04 4.61
4238 5401 4.447342 GGCCAGATGGGGGTGGTG 62.447 72.222 0.00 0.00 36.10 4.17
4239 5402 4.447342 GCCAGATGGGGGTGGTGG 62.447 72.222 0.12 0.00 36.10 4.61
4240 5403 4.447342 CCAGATGGGGGTGGTGGC 62.447 72.222 0.00 0.00 0.00 5.01
4241 5404 4.802051 CAGATGGGGGTGGTGGCG 62.802 72.222 0.00 0.00 0.00 5.69
4292 5455 2.124695 GGGGGCGTCATGAGAACC 60.125 66.667 0.00 0.00 0.00 3.62
4293 5456 2.511600 GGGGCGTCATGAGAACCG 60.512 66.667 0.00 0.00 0.00 4.44
4294 5457 2.511600 GGGCGTCATGAGAACCGG 60.512 66.667 0.00 0.00 0.00 5.28
4295 5458 3.195698 GGCGTCATGAGAACCGGC 61.196 66.667 12.96 12.96 38.68 6.13
4296 5459 3.554692 GCGTCATGAGAACCGGCG 61.555 66.667 0.00 0.00 0.00 6.46
4297 5460 2.180769 CGTCATGAGAACCGGCGA 59.819 61.111 9.30 0.00 0.00 5.54
4298 5461 2.158959 CGTCATGAGAACCGGCGAC 61.159 63.158 9.30 0.00 0.00 5.19
4379 5542 4.814294 CGAGTACCACGGCAGGGC 62.814 72.222 2.71 0.00 0.00 5.19
4446 5609 0.105039 CAAGTACAGCCGGATCTCCC 59.895 60.000 5.05 0.00 0.00 4.30
4464 5627 4.436998 GGACCGCTGTGACGAGGG 62.437 72.222 0.00 0.00 34.06 4.30
4483 5646 3.703127 GTGGAGGACCCCGGTGAC 61.703 72.222 0.00 0.00 34.81 3.67
4490 5653 3.602030 ACCCCGGTGACCTCCTCT 61.602 66.667 0.00 0.00 0.00 3.69
4501 5664 1.019650 ACCTCCTCTGGGGTGTAGAT 58.980 55.000 0.00 0.00 34.16 1.98
4588 5751 3.077556 CTCGGGTGGGGAGGACAG 61.078 72.222 0.00 0.00 0.00 3.51
4607 5770 4.083862 GGCGTGGTGGAGAGGGTC 62.084 72.222 0.00 0.00 0.00 4.46
4608 5771 3.311110 GCGTGGTGGAGAGGGTCA 61.311 66.667 0.00 0.00 0.00 4.02
4609 5772 2.973899 CGTGGTGGAGAGGGTCAG 59.026 66.667 0.00 0.00 0.00 3.51
4610 5773 2.665603 GTGGTGGAGAGGGTCAGC 59.334 66.667 0.00 0.00 0.00 4.26
4611 5774 2.997315 TGGTGGAGAGGGTCAGCG 60.997 66.667 0.00 0.00 34.49 5.18
4612 5775 3.775654 GGTGGAGAGGGTCAGCGG 61.776 72.222 0.00 0.00 0.00 5.52
4613 5776 4.459089 GTGGAGAGGGTCAGCGGC 62.459 72.222 0.00 0.00 0.00 6.53
4616 5779 4.803426 GAGAGGGTCAGCGGCGTG 62.803 72.222 9.37 5.92 0.00 5.34
4627 5790 3.461773 CGGCGTGGTGGAGAGGAT 61.462 66.667 0.00 0.00 0.00 3.24
4628 5791 2.990479 GGCGTGGTGGAGAGGATT 59.010 61.111 0.00 0.00 0.00 3.01
4629 5792 1.450312 GGCGTGGTGGAGAGGATTG 60.450 63.158 0.00 0.00 0.00 2.67
4685 5848 3.264845 GATGGGGTGGGTGGTGGT 61.265 66.667 0.00 0.00 0.00 4.16
4696 5859 0.322816 GGTGGTGGTGCAGACATGAT 60.323 55.000 0.00 0.00 0.00 2.45
4703 5866 1.406069 GGTGCAGACATGATCGGAACT 60.406 52.381 0.00 0.00 31.87 3.01
4706 5869 2.200067 GCAGACATGATCGGAACTGAG 58.800 52.381 0.00 0.00 0.00 3.35
4710 5873 3.894427 AGACATGATCGGAACTGAGCTAT 59.106 43.478 0.00 0.00 0.00 2.97
4718 5881 4.720046 TCGGAACTGAGCTATCTGATACT 58.280 43.478 0.00 0.00 0.00 2.12
4719 5882 4.757657 TCGGAACTGAGCTATCTGATACTC 59.242 45.833 14.81 14.81 0.00 2.59
4720 5883 4.083003 CGGAACTGAGCTATCTGATACTCC 60.083 50.000 17.10 7.78 0.00 3.85
4721 5884 4.219725 GGAACTGAGCTATCTGATACTCCC 59.780 50.000 17.10 11.14 0.00 4.30
4723 5886 4.662278 ACTGAGCTATCTGATACTCCCTC 58.338 47.826 17.10 10.97 0.00 4.30
4724 5887 4.016444 CTGAGCTATCTGATACTCCCTCC 58.984 52.174 17.10 2.78 0.00 4.30
4727 5890 2.750712 GCTATCTGATACTCCCTCCGTC 59.249 54.545 0.00 0.00 0.00 4.79
4728 5891 2.296073 ATCTGATACTCCCTCCGTCC 57.704 55.000 0.00 0.00 0.00 4.79
4729 5892 0.179026 TCTGATACTCCCTCCGTCCG 60.179 60.000 0.00 0.00 0.00 4.79
4732 5895 1.341285 TGATACTCCCTCCGTCCGAAA 60.341 52.381 0.00 0.00 0.00 3.46
4733 5896 1.753073 GATACTCCCTCCGTCCGAAAA 59.247 52.381 0.00 0.00 0.00 2.29
4736 5899 0.320697 CTCCCTCCGTCCGAAAAAGT 59.679 55.000 0.00 0.00 0.00 2.66
4737 5900 0.760572 TCCCTCCGTCCGAAAAAGTT 59.239 50.000 0.00 0.00 0.00 2.66
4739 5902 1.265905 CCCTCCGTCCGAAAAAGTTTG 59.734 52.381 0.00 0.00 0.00 2.93
4740 5903 1.944709 CCTCCGTCCGAAAAAGTTTGT 59.055 47.619 0.00 0.00 0.00 2.83
4741 5904 2.032290 CCTCCGTCCGAAAAAGTTTGTC 60.032 50.000 0.00 0.00 0.00 3.18
4742 5905 1.941975 TCCGTCCGAAAAAGTTTGTCC 59.058 47.619 0.00 0.00 0.00 4.02
4743 5906 1.944709 CCGTCCGAAAAAGTTTGTCCT 59.055 47.619 0.00 0.00 0.00 3.85
4744 5907 2.356695 CCGTCCGAAAAAGTTTGTCCTT 59.643 45.455 0.00 0.00 0.00 3.36
4745 5908 3.547413 CCGTCCGAAAAAGTTTGTCCTTC 60.547 47.826 0.00 0.00 0.00 3.46
4746 5909 3.064271 CGTCCGAAAAAGTTTGTCCTTCA 59.936 43.478 0.00 0.00 0.00 3.02
4747 5910 4.437659 CGTCCGAAAAAGTTTGTCCTTCAA 60.438 41.667 0.00 0.00 0.00 2.69
4748 5911 5.404096 GTCCGAAAAAGTTTGTCCTTCAAA 58.596 37.500 0.00 0.00 42.79 2.69
4749 5912 6.040247 GTCCGAAAAAGTTTGTCCTTCAAAT 58.960 36.000 0.00 0.00 45.88 2.32
4750 5913 6.019881 GTCCGAAAAAGTTTGTCCTTCAAATG 60.020 38.462 0.00 0.00 45.88 2.32
4752 5915 6.533367 CCGAAAAAGTTTGTCCTTCAAATGAA 59.467 34.615 0.00 0.00 45.88 2.57
4753 5916 7.224557 CCGAAAAAGTTTGTCCTTCAAATGAAT 59.775 33.333 0.00 0.00 45.88 2.57
4755 5918 8.791327 AAAAAGTTTGTCCTTCAAATGAATGT 57.209 26.923 0.00 0.00 45.88 2.71
4758 5921 9.696917 AAAGTTTGTCCTTCAAATGAATGTATC 57.303 29.630 0.00 0.00 45.88 2.24
4759 5922 8.641498 AGTTTGTCCTTCAAATGAATGTATCT 57.359 30.769 0.00 0.00 45.88 1.98
4762 5925 7.792374 TGTCCTTCAAATGAATGTATCTAGC 57.208 36.000 0.00 0.00 33.01 3.42
4763 5926 7.337938 TGTCCTTCAAATGAATGTATCTAGCA 58.662 34.615 0.00 0.00 33.01 3.49
4764 5927 7.280876 TGTCCTTCAAATGAATGTATCTAGCAC 59.719 37.037 0.00 0.00 33.01 4.40
4765 5928 7.497249 GTCCTTCAAATGAATGTATCTAGCACT 59.503 37.037 0.00 0.00 33.01 4.40
4767 5930 9.330063 CCTTCAAATGAATGTATCTAGCACTAA 57.670 33.333 0.00 0.00 33.01 2.24
4769 5932 9.890629 TTCAAATGAATGTATCTAGCACTAAGT 57.109 29.630 0.00 0.00 0.00 2.24
4770 5933 9.890629 TCAAATGAATGTATCTAGCACTAAGTT 57.109 29.630 0.00 0.00 0.00 2.66
4786 5949 6.712179 ACTAAGTTAGTGCTAGGTACATCC 57.288 41.667 14.82 0.00 37.69 3.51
4787 5950 6.192773 ACTAAGTTAGTGCTAGGTACATCCA 58.807 40.000 14.82 0.00 37.69 3.41
4788 5951 6.839657 ACTAAGTTAGTGCTAGGTACATCCAT 59.160 38.462 14.82 0.00 37.69 3.41
4789 5952 6.561519 AAGTTAGTGCTAGGTACATCCATT 57.438 37.500 0.00 0.00 39.02 3.16
4790 5953 6.561519 AGTTAGTGCTAGGTACATCCATTT 57.438 37.500 0.00 0.00 39.02 2.32
4791 5954 6.349300 AGTTAGTGCTAGGTACATCCATTTG 58.651 40.000 0.00 0.00 39.02 2.32
4792 5955 6.156256 AGTTAGTGCTAGGTACATCCATTTGA 59.844 38.462 0.00 0.00 39.02 2.69
4793 5956 5.028549 AGTGCTAGGTACATCCATTTGAG 57.971 43.478 0.00 0.00 39.02 3.02
4794 5957 4.130118 GTGCTAGGTACATCCATTTGAGG 58.870 47.826 0.00 0.00 39.02 3.86
4795 5958 4.037222 TGCTAGGTACATCCATTTGAGGA 58.963 43.478 0.00 0.00 43.01 3.71
4798 5961 2.846206 AGGTACATCCATTTGAGGAGCA 59.154 45.455 0.00 0.00 41.90 4.26
4799 5962 3.266772 AGGTACATCCATTTGAGGAGCAA 59.733 43.478 0.00 0.00 41.90 3.91
4803 5966 2.592102 TCCATTTGAGGAGCAAGCTT 57.408 45.000 0.00 0.00 37.87 3.74
4805 5968 1.203994 CCATTTGAGGAGCAAGCTTGG 59.796 52.381 27.10 9.80 37.87 3.61
4806 5969 1.203994 CATTTGAGGAGCAAGCTTGGG 59.796 52.381 27.10 3.84 37.87 4.12
4807 5970 0.478072 TTTGAGGAGCAAGCTTGGGA 59.522 50.000 27.10 0.00 37.87 4.37
4808 5971 0.250901 TTGAGGAGCAAGCTTGGGAC 60.251 55.000 27.10 11.27 31.55 4.46
4809 5972 1.376466 GAGGAGCAAGCTTGGGACA 59.624 57.895 27.10 0.00 0.00 4.02
4810 5973 4.411584 TTGAGGAGCAAGCTTGGGACAA 62.412 50.000 27.10 0.00 36.11 3.18
4820 5983 4.492604 TGGGACAAGCTTTTCCGG 57.507 55.556 22.30 0.00 31.92 5.14
4821 5984 1.840598 TGGGACAAGCTTTTCCGGA 59.159 52.632 22.30 10.91 31.92 5.14
4822 5985 0.536460 TGGGACAAGCTTTTCCGGAC 60.536 55.000 22.30 11.43 31.92 4.79
4823 5986 1.574702 GGGACAAGCTTTTCCGGACG 61.575 60.000 22.30 0.00 32.00 4.79
4825 5988 0.601841 GACAAGCTTTTCCGGACGGA 60.602 55.000 1.83 9.76 43.52 4.69
4829 5992 2.951101 GCTTTTCCGGACGGAGGGA 61.951 63.158 13.64 1.83 46.06 4.20
4831 5994 1.534717 TTTTCCGGACGGAGGGAGT 60.535 57.895 13.64 0.00 46.06 3.85
4832 5995 0.251742 TTTTCCGGACGGAGGGAGTA 60.252 55.000 13.64 0.00 46.06 2.59
4833 5996 0.967380 TTTCCGGACGGAGGGAGTAC 60.967 60.000 13.64 0.00 46.06 2.73
4834 5997 2.832201 CCGGACGGAGGGAGTACC 60.832 72.222 4.40 0.00 37.50 3.34
4860 8439 7.809880 AATTGGTAGAAACTAGGGTTCTACT 57.190 36.000 29.15 17.64 36.90 2.57
5182 8765 4.504461 CGCTCATAACACCTCTCAACATAC 59.496 45.833 0.00 0.00 0.00 2.39
5197 8780 9.318041 CTCTCAACATACGAAACACTTATTTTG 57.682 33.333 0.00 0.00 0.00 2.44
5260 8843 9.243637 GTGTTTATTGCAGAACATTCAAGTAAA 57.756 29.630 13.23 0.00 37.98 2.01
5339 8930 6.382859 TGCTCTAGGTCACCATCTTACAAATA 59.617 38.462 0.00 0.00 0.00 1.40
5341 8932 7.934120 GCTCTAGGTCACCATCTTACAAATATT 59.066 37.037 0.00 0.00 0.00 1.28
5342 8933 9.265901 CTCTAGGTCACCATCTTACAAATATTG 57.734 37.037 0.00 0.00 0.00 1.90
5344 8935 9.265901 CTAGGTCACCATCTTACAAATATTGAG 57.734 37.037 0.00 0.00 0.00 3.02
5346 8937 8.768397 AGGTCACCATCTTACAAATATTGAGTA 58.232 33.333 0.00 0.00 0.00 2.59
5347 8938 9.046296 GGTCACCATCTTACAAATATTGAGTAG 57.954 37.037 0.00 0.00 0.00 2.57
5348 8939 9.817809 GTCACCATCTTACAAATATTGAGTAGA 57.182 33.333 0.00 0.00 0.00 2.59
5359 8950 8.371699 ACAAATATTGAGTAGAGATAGGAAGGC 58.628 37.037 0.00 0.00 0.00 4.35
5362 8953 5.860941 TTGAGTAGAGATAGGAAGGCTTG 57.139 43.478 3.46 0.00 0.00 4.01
5363 8954 4.219115 TGAGTAGAGATAGGAAGGCTTGG 58.781 47.826 3.46 0.00 0.00 3.61
5364 8955 2.969262 AGTAGAGATAGGAAGGCTTGGC 59.031 50.000 3.46 0.00 0.00 4.52
5365 8956 1.885049 AGAGATAGGAAGGCTTGGCA 58.115 50.000 3.46 0.00 0.00 4.92
5366 8957 1.488393 AGAGATAGGAAGGCTTGGCAC 59.512 52.381 3.46 0.00 0.00 5.01
5367 8958 0.179000 AGATAGGAAGGCTTGGCACG 59.821 55.000 3.46 0.00 0.00 5.34
5368 8959 0.107654 GATAGGAAGGCTTGGCACGT 60.108 55.000 3.46 0.00 0.00 4.49
5369 8960 0.392998 ATAGGAAGGCTTGGCACGTG 60.393 55.000 12.28 12.28 0.00 4.49
5370 8961 1.764571 TAGGAAGGCTTGGCACGTGT 61.765 55.000 18.38 0.00 0.00 4.49
5371 8962 2.193536 GGAAGGCTTGGCACGTGTT 61.194 57.895 18.38 0.63 0.00 3.32
5374 8965 1.335496 GAAGGCTTGGCACGTGTTTAA 59.665 47.619 18.38 9.01 0.00 1.52
5375 8966 0.666374 AGGCTTGGCACGTGTTTAAC 59.334 50.000 18.38 4.48 0.00 2.01
5376 8967 0.382515 GGCTTGGCACGTGTTTAACA 59.617 50.000 18.38 6.20 0.00 2.41
5379 8970 2.478879 GCTTGGCACGTGTTTAACAAGT 60.479 45.455 24.82 10.63 41.34 3.16
5383 8974 3.688185 TGGCACGTGTTTAACAAGTAACA 59.312 39.130 18.38 13.90 38.71 2.41
5384 8975 4.155462 TGGCACGTGTTTAACAAGTAACAA 59.845 37.500 18.38 3.38 38.71 2.83
5386 8977 5.744819 GGCACGTGTTTAACAAGTAACAAAT 59.255 36.000 18.38 0.00 38.71 2.32
5387 8978 6.291374 GGCACGTGTTTAACAAGTAACAAATG 60.291 38.462 18.38 4.22 38.71 2.32
5388 8979 6.251801 GCACGTGTTTAACAAGTAACAAATGT 59.748 34.615 18.38 0.00 38.71 2.71
5389 8980 7.428761 GCACGTGTTTAACAAGTAACAAATGTA 59.571 33.333 18.38 0.00 38.71 2.29
5390 8981 8.726836 CACGTGTTTAACAAGTAACAAATGTAC 58.273 33.333 15.43 0.00 38.71 2.90
5391 8982 8.449397 ACGTGTTTAACAAGTAACAAATGTACA 58.551 29.630 14.41 0.00 38.97 2.90
5824 10456 9.277565 CACACTGACTTTAAATATGCAATGTAC 57.722 33.333 0.00 0.00 0.00 2.90
5838 11602 4.852138 GCAATGTACATACTTGCATCTGG 58.148 43.478 21.95 0.00 43.62 3.86
6004 11768 8.668510 AGATATATGTGGTGTCATGAAAGTTC 57.331 34.615 0.00 0.00 0.00 3.01
6261 12191 5.118664 GGCTATTTCTTTTTGAAAACTCGGC 59.881 40.000 0.00 0.00 46.32 5.54
6311 12241 5.419239 AAGATTCTATCATCTAGCCCTGC 57.581 43.478 0.00 0.00 32.84 4.85
6322 12252 6.233434 TCATCTAGCCCTGCTTTATGTATTG 58.767 40.000 0.00 0.00 40.44 1.90
6466 12406 2.549754 CCCTAGCTGATTGCCGTATTTG 59.450 50.000 0.00 0.00 44.23 2.32
6738 12678 5.659971 TCCCTAACTCCTTGATACAAGTACC 59.340 44.000 9.99 0.00 0.00 3.34
6760 12700 4.539083 ACGCAGGACACGGTGCAA 62.539 61.111 8.30 0.00 39.83 4.08
6762 12702 2.616330 CGCAGGACACGGTGCAATT 61.616 57.895 8.30 0.00 39.83 2.32
6772 12712 4.765273 ACACGGTGCAATTGATATAGTCA 58.235 39.130 10.34 0.00 34.25 3.41
6780 12720 7.255381 GGTGCAATTGATATAGTCAGCAGAAAT 60.255 37.037 10.34 0.00 36.55 2.17
6781 12721 7.590322 GTGCAATTGATATAGTCAGCAGAAATG 59.410 37.037 10.34 0.00 36.55 2.32
6782 12722 6.581542 GCAATTGATATAGTCAGCAGAAATGC 59.418 38.462 10.34 0.00 38.29 3.56
6783 12723 6.814506 ATTGATATAGTCAGCAGAAATGCC 57.185 37.500 0.00 0.00 38.29 4.40
6817 12759 5.674569 GCAAGACTTATGCACATCATTTCGT 60.675 40.000 0.00 0.00 43.29 3.85
6964 12911 1.634702 GTAGAGGCAGTTGAAGAGCG 58.365 55.000 0.00 0.00 0.00 5.03
7021 12968 4.032558 GTCACTGCACGCTTATAACTAACC 59.967 45.833 0.00 0.00 0.00 2.85
7032 12979 0.813184 TAACTAACCGACGGGCAGAG 59.187 55.000 20.00 11.48 36.48 3.35
7064 13017 5.344884 GTCGTCCTGGAAGAAGAATAAGAG 58.655 45.833 13.96 0.00 34.07 2.85
7066 13019 4.402793 CGTCCTGGAAGAAGAATAAGAGGA 59.597 45.833 3.30 0.00 34.07 3.71
7067 13020 5.069781 CGTCCTGGAAGAAGAATAAGAGGAT 59.930 44.000 3.30 0.00 34.07 3.24
7068 13021 6.287525 GTCCTGGAAGAAGAATAAGAGGATG 58.712 44.000 0.00 0.00 34.07 3.51
7071 13024 6.352565 CCTGGAAGAAGAATAAGAGGATGTGT 60.353 42.308 0.00 0.00 34.07 3.72
7076 13029 5.879223 AGAAGAATAAGAGGATGTGTTGCAG 59.121 40.000 0.00 0.00 0.00 4.41
7077 13030 4.521146 AGAATAAGAGGATGTGTTGCAGG 58.479 43.478 0.00 0.00 0.00 4.85
7078 13031 2.113860 TAAGAGGATGTGTTGCAGGC 57.886 50.000 0.00 0.00 0.00 4.85
7233 13297 4.034510 GGATCTTGTATGACTTTCCAAGCG 59.965 45.833 0.00 0.00 35.42 4.68
7242 13306 1.539827 ACTTTCCAAGCGATTTTCCGG 59.460 47.619 0.00 0.00 0.00 5.14
7249 13313 4.573201 TCCAAGCGATTTTCCGGTATAAAG 59.427 41.667 0.00 0.00 39.52 1.85
7292 13356 2.030893 TGAAACTCTTGCATTTCGCCTG 60.031 45.455 6.14 0.00 41.33 4.85
7313 13377 1.472480 CCGGGCACTTTTCACCTAATG 59.528 52.381 0.00 0.00 0.00 1.90
7326 13390 8.744568 TTTTCACCTAATGCCAATTTTTCTTT 57.255 26.923 0.00 0.00 0.00 2.52
7327 13391 8.744568 TTTCACCTAATGCCAATTTTTCTTTT 57.255 26.923 0.00 0.00 0.00 2.27
7328 13392 8.744568 TTCACCTAATGCCAATTTTTCTTTTT 57.255 26.923 0.00 0.00 0.00 1.94
7371 13509 3.701241 TCGTTTCTTTGGTGCAATCAAC 58.299 40.909 3.55 0.00 0.00 3.18
7451 13590 6.884832 TGTTCTTATGTCATTAGAATCCCGT 58.115 36.000 15.35 0.00 31.25 5.28
7466 13605 1.067142 TCCCGTGAATCAAAGAGTCCG 60.067 52.381 0.00 0.00 0.00 4.79
7468 13607 1.428448 CGTGAATCAAAGAGTCCGCA 58.572 50.000 0.00 0.00 0.00 5.69
7507 13646 0.108186 TCAGATGGTCCACACGATGC 60.108 55.000 0.00 0.00 0.00 3.91
7511 13650 0.391661 ATGGTCCACACGATGCAGAC 60.392 55.000 0.00 0.00 0.00 3.51
7526 13665 3.264947 TGCAGACTCATCGAATCAAAGG 58.735 45.455 0.00 0.00 0.00 3.11
7564 13703 0.664761 ATTGTGATATGCGCAGTGGC 59.335 50.000 18.32 5.78 38.43 5.01
7637 13776 1.670406 CTGAGTGCTGCTTCGCCTT 60.670 57.895 0.00 0.00 0.00 4.35
7638 13777 1.909141 CTGAGTGCTGCTTCGCCTTG 61.909 60.000 0.00 0.00 0.00 3.61
7639 13778 2.670934 AGTGCTGCTTCGCCTTGG 60.671 61.111 0.00 0.00 0.00 3.61
7640 13779 2.669569 GTGCTGCTTCGCCTTGGA 60.670 61.111 0.00 0.00 0.00 3.53
7641 13780 2.669569 TGCTGCTTCGCCTTGGAC 60.670 61.111 0.00 0.00 0.00 4.02
7642 13781 3.435186 GCTGCTTCGCCTTGGACC 61.435 66.667 0.00 0.00 0.00 4.46
7643 13782 3.121030 CTGCTTCGCCTTGGACCG 61.121 66.667 0.00 0.00 0.00 4.79
7678 13817 4.991056 CGCTGTTATTCTACATACATGGCT 59.009 41.667 0.00 0.00 0.00 4.75
7679 13818 5.107337 CGCTGTTATTCTACATACATGGCTG 60.107 44.000 0.00 0.00 0.00 4.85
7680 13819 5.991606 GCTGTTATTCTACATACATGGCTGA 59.008 40.000 0.00 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
240 245 6.339587 TGATAAGAACATTTTCCCCACAAC 57.660 37.500 0.00 0.00 31.28 3.32
249 254 4.917415 GCACGCAGTTGATAAGAACATTTT 59.083 37.500 0.00 0.00 41.61 1.82
272 278 7.864379 ACTTGCTCATAGTGAAACAAAAATGAG 59.136 33.333 5.90 5.90 41.19 2.90
300 306 4.130118 AGAACTTATGAATAGGGCGCAAG 58.870 43.478 10.83 2.95 43.44 4.01
301 307 4.127171 GAGAACTTATGAATAGGGCGCAA 58.873 43.478 10.83 0.00 0.00 4.85
302 308 3.133901 TGAGAACTTATGAATAGGGCGCA 59.866 43.478 10.83 0.00 0.00 6.09
303 309 3.728845 TGAGAACTTATGAATAGGGCGC 58.271 45.455 0.00 0.00 0.00 6.53
304 310 4.752101 CCTTGAGAACTTATGAATAGGGCG 59.248 45.833 0.00 0.00 0.00 6.13
305 311 5.066593 CCCTTGAGAACTTATGAATAGGGC 58.933 45.833 0.00 0.00 33.96 5.19
306 312 5.066593 GCCCTTGAGAACTTATGAATAGGG 58.933 45.833 0.00 0.00 42.17 3.53
307 313 5.529060 GTGCCCTTGAGAACTTATGAATAGG 59.471 44.000 0.00 0.00 0.00 2.57
308 314 5.529060 GGTGCCCTTGAGAACTTATGAATAG 59.471 44.000 0.00 0.00 0.00 1.73
309 315 5.437060 GGTGCCCTTGAGAACTTATGAATA 58.563 41.667 0.00 0.00 0.00 1.75
310 316 4.273318 GGTGCCCTTGAGAACTTATGAAT 58.727 43.478 0.00 0.00 0.00 2.57
311 317 3.686016 GGTGCCCTTGAGAACTTATGAA 58.314 45.455 0.00 0.00 0.00 2.57
312 318 2.354704 CGGTGCCCTTGAGAACTTATGA 60.355 50.000 0.00 0.00 0.00 2.15
313 319 2.009774 CGGTGCCCTTGAGAACTTATG 58.990 52.381 0.00 0.00 0.00 1.90
314 320 1.906574 TCGGTGCCCTTGAGAACTTAT 59.093 47.619 0.00 0.00 0.00 1.73
315 321 1.275291 CTCGGTGCCCTTGAGAACTTA 59.725 52.381 0.00 0.00 31.31 2.24
316 322 0.035458 CTCGGTGCCCTTGAGAACTT 59.965 55.000 0.00 0.00 31.31 2.66
317 323 0.832135 TCTCGGTGCCCTTGAGAACT 60.832 55.000 0.00 0.00 35.91 3.01
318 324 0.250513 ATCTCGGTGCCCTTGAGAAC 59.749 55.000 0.00 0.00 41.68 3.01
319 325 1.480954 GTATCTCGGTGCCCTTGAGAA 59.519 52.381 0.00 0.00 41.68 2.87
320 326 1.112113 GTATCTCGGTGCCCTTGAGA 58.888 55.000 0.00 0.00 42.47 3.27
321 327 0.824109 TGTATCTCGGTGCCCTTGAG 59.176 55.000 0.00 0.00 0.00 3.02
322 328 0.535335 GTGTATCTCGGTGCCCTTGA 59.465 55.000 0.00 0.00 0.00 3.02
323 329 0.462047 GGTGTATCTCGGTGCCCTTG 60.462 60.000 0.00 0.00 0.00 3.61
324 330 1.905512 GGTGTATCTCGGTGCCCTT 59.094 57.895 0.00 0.00 0.00 3.95
325 331 2.423898 CGGTGTATCTCGGTGCCCT 61.424 63.158 0.00 0.00 0.00 5.19
326 332 1.386525 TACGGTGTATCTCGGTGCCC 61.387 60.000 0.00 0.00 0.00 5.36
327 333 0.248784 GTACGGTGTATCTCGGTGCC 60.249 60.000 0.00 0.00 0.00 5.01
328 334 0.452987 TGTACGGTGTATCTCGGTGC 59.547 55.000 0.00 0.00 0.00 5.01
329 335 1.530441 CGTGTACGGTGTATCTCGGTG 60.530 57.143 0.00 0.00 35.37 4.94
330 336 0.729116 CGTGTACGGTGTATCTCGGT 59.271 55.000 0.00 0.00 35.37 4.69
331 337 1.004185 CTCGTGTACGGTGTATCTCGG 60.004 57.143 4.44 0.00 40.29 4.63
332 338 1.662629 ACTCGTGTACGGTGTATCTCG 59.337 52.381 4.44 0.00 40.29 4.04
333 339 2.223203 CCACTCGTGTACGGTGTATCTC 60.223 54.545 17.96 0.00 38.19 2.75
334 340 1.741706 CCACTCGTGTACGGTGTATCT 59.258 52.381 17.96 0.00 38.19 1.98
335 341 1.739466 TCCACTCGTGTACGGTGTATC 59.261 52.381 17.96 0.00 38.19 2.24
336 342 1.825090 TCCACTCGTGTACGGTGTAT 58.175 50.000 17.96 0.00 38.19 2.29
337 343 1.825090 ATCCACTCGTGTACGGTGTA 58.175 50.000 17.96 8.58 38.19 2.90
338 344 0.963962 AATCCACTCGTGTACGGTGT 59.036 50.000 17.96 10.12 38.19 4.16
339 345 2.074547 AAATCCACTCGTGTACGGTG 57.925 50.000 14.72 14.72 40.29 4.94
340 346 2.409975 CAAAATCCACTCGTGTACGGT 58.590 47.619 4.44 0.00 40.29 4.83
341 347 1.127951 GCAAAATCCACTCGTGTACGG 59.872 52.381 4.44 0.00 40.29 4.02
342 348 1.201769 CGCAAAATCCACTCGTGTACG 60.202 52.381 0.00 0.00 41.45 3.67
343 349 1.463528 GCGCAAAATCCACTCGTGTAC 60.464 52.381 0.30 0.00 0.00 2.90
344 350 0.793861 GCGCAAAATCCACTCGTGTA 59.206 50.000 0.30 0.00 0.00 2.90
345 351 1.574428 GCGCAAAATCCACTCGTGT 59.426 52.632 0.30 0.00 0.00 4.49
346 352 1.509787 CGCGCAAAATCCACTCGTG 60.510 57.895 8.75 0.00 0.00 4.35
347 353 2.860293 CGCGCAAAATCCACTCGT 59.140 55.556 8.75 0.00 0.00 4.18
348 354 1.692148 TAGCGCGCAAAATCCACTCG 61.692 55.000 35.10 0.00 0.00 4.18
349 355 0.657840 ATAGCGCGCAAAATCCACTC 59.342 50.000 35.10 0.00 0.00 3.51
350 356 1.064060 GAATAGCGCGCAAAATCCACT 59.936 47.619 35.10 11.76 0.00 4.00
351 357 1.202132 TGAATAGCGCGCAAAATCCAC 60.202 47.619 35.10 15.36 0.00 4.02
352 358 1.090728 TGAATAGCGCGCAAAATCCA 58.909 45.000 35.10 19.14 0.00 3.41
353 359 2.405892 ATGAATAGCGCGCAAAATCC 57.594 45.000 35.10 16.72 0.00 3.01
354 360 4.527564 ACTTATGAATAGCGCGCAAAATC 58.472 39.130 35.10 23.99 0.00 2.17
355 361 4.552166 ACTTATGAATAGCGCGCAAAAT 57.448 36.364 35.10 20.32 0.00 1.82
364 370 5.008118 GTGCCCTTGAGAACTTATGAATAGC 59.992 44.000 0.00 0.00 0.00 2.97
394 462 4.209703 CGAACACTTTGTGTATGGTACGTT 59.790 41.667 3.68 0.00 46.79 3.99
395 463 3.737266 CGAACACTTTGTGTATGGTACGT 59.263 43.478 3.68 0.00 46.79 3.57
396 464 3.737266 ACGAACACTTTGTGTATGGTACG 59.263 43.478 3.68 6.42 46.79 3.67
397 465 5.333568 GGAACGAACACTTTGTGTATGGTAC 60.334 44.000 3.68 0.00 46.79 3.34
410 478 3.118738 GGGAGTATGATGGAACGAACACT 60.119 47.826 0.00 0.00 0.00 3.55
415 483 2.434336 CCAAGGGAGTATGATGGAACGA 59.566 50.000 0.00 0.00 32.82 3.85
435 503 9.085250 TCGTGGTTTTAGTTTAAATTTGAAACC 57.915 29.630 22.02 22.02 42.85 3.27
447 515 8.460428 TCAAAATACTTGTCGTGGTTTTAGTTT 58.540 29.630 0.00 0.00 0.00 2.66
471 539 2.654877 GCGACTCCCTCCGTTTCA 59.345 61.111 0.00 0.00 0.00 2.69
482 550 1.400737 ACCTACACTATGGGCGACTC 58.599 55.000 0.00 0.00 29.87 3.36
486 554 5.699458 CCTAATTTAACCTACACTATGGGCG 59.301 44.000 0.00 0.00 29.87 6.13
487 555 6.834107 TCCTAATTTAACCTACACTATGGGC 58.166 40.000 0.00 0.00 29.87 5.36
488 556 8.269317 TGTTCCTAATTTAACCTACACTATGGG 58.731 37.037 0.00 0.00 34.27 4.00
489 557 9.847224 ATGTTCCTAATTTAACCTACACTATGG 57.153 33.333 0.00 0.00 0.00 2.74
559 733 6.727824 AACTACGAAGAACCATTTGATCAG 57.272 37.500 0.00 0.00 0.00 2.90
562 736 6.877611 ACAAACTACGAAGAACCATTTGAT 57.122 33.333 0.00 0.00 31.59 2.57
565 739 6.987992 TCACTACAAACTACGAAGAACCATTT 59.012 34.615 0.00 0.00 0.00 2.32
566 740 6.518493 TCACTACAAACTACGAAGAACCATT 58.482 36.000 0.00 0.00 0.00 3.16
570 744 9.403110 TCTAAATCACTACAAACTACGAAGAAC 57.597 33.333 0.00 0.00 0.00 3.01
571 745 9.970395 TTCTAAATCACTACAAACTACGAAGAA 57.030 29.630 0.00 0.00 0.00 2.52
575 749 9.146984 CCATTTCTAAATCACTACAAACTACGA 57.853 33.333 0.00 0.00 0.00 3.43
576 750 8.932791 ACCATTTCTAAATCACTACAAACTACG 58.067 33.333 0.00 0.00 0.00 3.51
579 753 8.918202 TGACCATTTCTAAATCACTACAAACT 57.082 30.769 0.00 0.00 0.00 2.66
580 754 9.774742 GATGACCATTTCTAAATCACTACAAAC 57.225 33.333 0.00 0.00 0.00 2.93
585 774 7.127186 TCCCAGATGACCATTTCTAAATCACTA 59.873 37.037 0.00 0.00 0.00 2.74
591 780 8.336235 AGTATTTCCCAGATGACCATTTCTAAA 58.664 33.333 0.00 0.00 0.00 1.85
616 805 9.566624 CAACACGCTTGAAAACAAAAATATTAG 57.433 29.630 0.00 0.00 0.00 1.73
642 832 2.412847 CCGTTTTTCATCTCGTTGAGCC 60.413 50.000 0.00 0.00 0.00 4.70
643 833 2.478894 TCCGTTTTTCATCTCGTTGAGC 59.521 45.455 0.00 0.00 0.00 4.26
715 937 5.603170 TTGCATACATGATCAGAGAGTCA 57.397 39.130 0.00 0.00 0.00 3.41
716 938 6.915544 TTTTGCATACATGATCAGAGAGTC 57.084 37.500 0.00 0.00 0.00 3.36
717 939 7.013083 GGAATTTTGCATACATGATCAGAGAGT 59.987 37.037 0.00 0.00 0.00 3.24
722 944 7.430441 TGATGGAATTTTGCATACATGATCAG 58.570 34.615 0.00 0.00 39.44 2.90
752 1034 4.471386 ACAAACTAGTCCCTATGAGCATGT 59.529 41.667 0.00 0.00 0.00 3.21
835 1119 1.710809 CCCTTCCCCTTCTTTCTTCCA 59.289 52.381 0.00 0.00 0.00 3.53
873 1892 4.554036 GTGGAGGCGATCTGGGGC 62.554 72.222 0.00 0.00 0.00 5.80
874 1893 3.083349 TGTGGAGGCGATCTGGGG 61.083 66.667 0.00 0.00 0.00 4.96
917 1936 4.673298 TGTGGGTGCGTACGGCTG 62.673 66.667 18.39 0.00 44.05 4.85
968 2037 1.561542 GGAAGAATGGAAGAGGAGCCA 59.438 52.381 0.00 0.00 38.78 4.75
978 2047 2.780010 GGAGATGGAAGGGAAGAATGGA 59.220 50.000 0.00 0.00 0.00 3.41
1104 2174 3.031417 AAGGGTCCAGGCGAATCCG 62.031 63.158 0.00 0.00 40.77 4.18
1247 2317 1.530441 CGTTGCGCAATCCATCTCTTG 60.530 52.381 27.79 2.68 0.00 3.02
1266 2336 3.197790 CATGGAAGCGTGGGAGCG 61.198 66.667 0.00 0.00 43.00 5.03
1309 2379 0.888285 GCTGAGCTTTGTGGCTGAGT 60.888 55.000 0.00 0.00 43.59 3.41
1330 2400 2.730404 GAGATGACTGCTGCACATATCG 59.270 50.000 10.72 0.00 0.00 2.92
1448 2519 3.447742 GCACCTAAAAAGTATGGCATGC 58.552 45.455 9.90 9.90 0.00 4.06
1470 2541 9.171701 CAAAAGCACACCAAAATTCAAAATATG 57.828 29.630 0.00 0.00 0.00 1.78
1532 2606 4.753516 TGTTCAGAACAGGAGTCAGAAA 57.246 40.909 12.24 0.00 36.25 2.52
1648 2722 1.640428 TCGGTCAATTCACGATGCTC 58.360 50.000 0.00 0.00 0.00 4.26
1650 2724 1.732259 ACTTCGGTCAATTCACGATGC 59.268 47.619 0.00 0.00 36.43 3.91
1659 2733 3.488047 CGGTATCACGTACTTCGGTCAAT 60.488 47.826 0.00 0.00 44.69 2.57
1673 2747 0.389426 ACACAAGTCGGCGGTATCAC 60.389 55.000 7.21 0.00 0.00 3.06
1681 2755 2.165319 AGTCCTTTACACAAGTCGGC 57.835 50.000 0.00 0.00 0.00 5.54
1683 2757 3.059597 CAGCAAGTCCTTTACACAAGTCG 60.060 47.826 0.00 0.00 0.00 4.18
1812 2886 5.920193 AACCATCAAGGAATTGTACCATG 57.080 39.130 0.00 0.00 41.22 3.66
1855 2929 1.160137 CCACTCGGGAGCTTTTCAAG 58.840 55.000 0.00 0.00 40.01 3.02
1972 3054 7.899330 CACAACAAAAATGAAAGTGAACATGAC 59.101 33.333 0.00 0.00 0.00 3.06
1980 3062 5.783100 ACTGCACAACAAAAATGAAAGTG 57.217 34.783 0.00 0.00 0.00 3.16
1982 3064 8.016801 AGAAAAACTGCACAACAAAAATGAAAG 58.983 29.630 0.00 0.00 0.00 2.62
1985 3067 6.183360 CGAGAAAAACTGCACAACAAAAATGA 60.183 34.615 0.00 0.00 0.00 2.57
1995 3077 3.791789 GCAACATCGAGAAAAACTGCACA 60.792 43.478 0.00 0.00 0.00 4.57
1996 3078 2.721090 GCAACATCGAGAAAAACTGCAC 59.279 45.455 0.00 0.00 0.00 4.57
2009 3091 3.243035 TGTCTCCAAAAACAGCAACATCG 60.243 43.478 0.00 0.00 0.00 3.84
2108 3190 8.808092 AGCTCTATTACAAGGTTATAGTCCATC 58.192 37.037 0.00 0.00 30.30 3.51
2261 3343 9.661187 GTTTTGTAGTTAGTTTAGCTTCTTTCC 57.339 33.333 0.00 0.00 0.00 3.13
2305 3387 0.394899 CCTCCTGATGGCACCCTTTC 60.395 60.000 0.00 0.00 0.00 2.62
2487 3570 8.470805 ACTGTCCAGTACTTCAAATATCTACAG 58.529 37.037 0.00 0.00 40.43 2.74
2502 3585 2.548067 CCACCAGAACACTGTCCAGTAC 60.548 54.545 0.00 0.00 40.20 2.73
2508 3591 4.332819 GCATATAACCACCAGAACACTGTC 59.667 45.833 0.00 0.00 0.00 3.51
2569 3652 6.351117 CCAGTAGAACCCTAGTTTCTACCAAG 60.351 46.154 24.63 18.50 37.34 3.61
2592 3675 1.048724 CAATCTCCGCCCTAGACCCA 61.049 60.000 0.00 0.00 0.00 4.51
2843 3999 2.158460 GGCCTGGCCCAGTTATCTTATT 60.158 50.000 27.77 0.00 44.06 1.40
2915 4076 0.597637 CGAGGACGAGCTGTTTGTGT 60.598 55.000 0.00 0.00 42.66 3.72
3324 4487 0.108089 ACGGCCATGTATTACGCACA 60.108 50.000 2.24 0.00 0.00 4.57
3542 4705 2.646175 CCTCCTTCGCTTCGGACCA 61.646 63.158 0.00 0.00 0.00 4.02
3543 4706 2.184579 CCTCCTTCGCTTCGGACC 59.815 66.667 0.00 0.00 0.00 4.46
3638 4801 0.105039 CCTCTTATCACCTCCGTGGC 59.895 60.000 0.00 0.00 40.65 5.01
3641 4804 0.395311 TCGCCTCTTATCACCTCCGT 60.395 55.000 0.00 0.00 0.00 4.69
3695 4858 1.021390 AATGCGAGCAGTTCTTCCGG 61.021 55.000 3.58 0.00 0.00 5.14
3724 4887 2.160853 ACCAAGGACCCCCTCAACC 61.161 63.158 0.00 0.00 43.48 3.77
3739 4902 3.687102 CCACCTACGACGGCACCA 61.687 66.667 0.00 0.00 0.00 4.17
3951 5114 1.453197 CTATGGCCGGGGAACAACC 60.453 63.158 2.18 0.00 38.08 3.77
3952 5115 1.029947 CACTATGGCCGGGGAACAAC 61.030 60.000 2.18 0.00 0.00 3.32
3953 5116 1.301623 CACTATGGCCGGGGAACAA 59.698 57.895 2.18 0.00 0.00 2.83
3954 5117 0.618107 TACACTATGGCCGGGGAACA 60.618 55.000 2.18 0.00 0.00 3.18
3955 5118 0.106149 CTACACTATGGCCGGGGAAC 59.894 60.000 2.18 0.00 0.00 3.62
3956 5119 0.031917 TCTACACTATGGCCGGGGAA 60.032 55.000 2.18 0.00 0.00 3.97
3957 5120 0.757935 GTCTACACTATGGCCGGGGA 60.758 60.000 2.18 0.00 0.00 4.81
3958 5121 1.746517 GTCTACACTATGGCCGGGG 59.253 63.158 2.18 0.00 0.00 5.73
3959 5122 1.746517 GGTCTACACTATGGCCGGG 59.253 63.158 2.18 0.00 0.00 5.73
3960 5123 1.362717 CGGTCTACACTATGGCCGG 59.637 63.158 0.00 0.00 36.05 6.13
3961 5124 1.362717 CCGGTCTACACTATGGCCG 59.637 63.158 0.00 0.00 38.99 6.13
3962 5125 0.828677 AACCGGTCTACACTATGGCC 59.171 55.000 8.04 0.00 0.00 5.36
3963 5126 1.206371 ACAACCGGTCTACACTATGGC 59.794 52.381 8.04 0.00 0.00 4.40
3964 5127 2.418197 CCACAACCGGTCTACACTATGG 60.418 54.545 8.04 0.00 0.00 2.74
3965 5128 2.888594 CCACAACCGGTCTACACTATG 58.111 52.381 8.04 1.48 0.00 2.23
3966 5129 1.206371 GCCACAACCGGTCTACACTAT 59.794 52.381 8.04 0.00 0.00 2.12
3967 5130 0.604578 GCCACAACCGGTCTACACTA 59.395 55.000 8.04 0.00 0.00 2.74
3968 5131 1.370064 GCCACAACCGGTCTACACT 59.630 57.895 8.04 0.00 0.00 3.55
3969 5132 2.025418 CGCCACAACCGGTCTACAC 61.025 63.158 8.04 0.00 0.00 2.90
3970 5133 2.340809 CGCCACAACCGGTCTACA 59.659 61.111 8.04 0.00 0.00 2.74
3971 5134 1.735559 GACGCCACAACCGGTCTAC 60.736 63.158 8.04 0.00 0.00 2.59
3972 5135 2.652530 GACGCCACAACCGGTCTA 59.347 61.111 8.04 0.00 0.00 2.59
3973 5136 4.657824 CGACGCCACAACCGGTCT 62.658 66.667 8.04 0.00 0.00 3.85
3974 5137 4.651008 TCGACGCCACAACCGGTC 62.651 66.667 8.04 0.00 0.00 4.79
3975 5138 4.955774 GTCGACGCCACAACCGGT 62.956 66.667 0.00 0.00 0.00 5.28
4007 5170 4.351938 TCACCGTCACCGCTTCCG 62.352 66.667 0.00 0.00 0.00 4.30
4008 5171 2.432628 CTCACCGTCACCGCTTCC 60.433 66.667 0.00 0.00 0.00 3.46
4009 5172 2.432628 CCTCACCGTCACCGCTTC 60.433 66.667 0.00 0.00 0.00 3.86
4010 5173 4.003788 CCCTCACCGTCACCGCTT 62.004 66.667 0.00 0.00 0.00 4.68
4013 5176 4.373116 CCACCCTCACCGTCACCG 62.373 72.222 0.00 0.00 0.00 4.94
4014 5177 4.016706 CCCACCCTCACCGTCACC 62.017 72.222 0.00 0.00 0.00 4.02
4015 5178 2.513259 TTCCCACCCTCACCGTCAC 61.513 63.158 0.00 0.00 0.00 3.67
4016 5179 2.122769 TTCCCACCCTCACCGTCA 60.123 61.111 0.00 0.00 0.00 4.35
4017 5180 2.346365 GTTCCCACCCTCACCGTC 59.654 66.667 0.00 0.00 0.00 4.79
4018 5181 3.246880 GGTTCCCACCCTCACCGT 61.247 66.667 0.00 0.00 37.03 4.83
4019 5182 4.388499 CGGTTCCCACCCTCACCG 62.388 72.222 0.00 0.00 45.75 4.94
4020 5183 4.029809 CCGGTTCCCACCCTCACC 62.030 72.222 0.00 0.00 40.52 4.02
4021 5184 2.926242 TCCGGTTCCCACCCTCAC 60.926 66.667 0.00 0.00 40.52 3.51
4022 5185 2.926242 GTCCGGTTCCCACCCTCA 60.926 66.667 0.00 0.00 40.52 3.86
4023 5186 3.714001 GGTCCGGTTCCCACCCTC 61.714 72.222 0.00 0.00 40.52 4.30
4024 5187 4.265507 AGGTCCGGTTCCCACCCT 62.266 66.667 0.00 0.00 40.52 4.34
4025 5188 4.029809 CAGGTCCGGTTCCCACCC 62.030 72.222 0.00 0.00 40.52 4.61
4026 5189 4.717313 GCAGGTCCGGTTCCCACC 62.717 72.222 0.00 0.05 40.16 4.61
4027 5190 3.637273 AGCAGGTCCGGTTCCCAC 61.637 66.667 0.00 0.99 0.00 4.61
4028 5191 3.636231 CAGCAGGTCCGGTTCCCA 61.636 66.667 0.00 0.00 0.00 4.37
4029 5192 4.410400 CCAGCAGGTCCGGTTCCC 62.410 72.222 0.00 0.00 0.00 3.97
4030 5193 2.595009 GATCCAGCAGGTCCGGTTCC 62.595 65.000 0.00 5.78 35.89 3.62
4031 5194 1.153349 GATCCAGCAGGTCCGGTTC 60.153 63.158 0.00 0.00 35.89 3.62
4032 5195 2.990479 GATCCAGCAGGTCCGGTT 59.010 61.111 0.00 0.00 35.89 4.44
4033 5196 3.461773 CGATCCAGCAGGTCCGGT 61.462 66.667 0.00 0.00 35.89 5.28
4034 5197 4.227134 CCGATCCAGCAGGTCCGG 62.227 72.222 14.02 14.02 41.58 5.14
4035 5198 2.721167 TTCCGATCCAGCAGGTCCG 61.721 63.158 0.00 0.05 35.89 4.79
4036 5199 1.153349 GTTCCGATCCAGCAGGTCC 60.153 63.158 0.00 0.00 35.89 4.46
4037 5200 1.519455 CGTTCCGATCCAGCAGGTC 60.519 63.158 0.00 0.00 35.89 3.85
4038 5201 2.579201 CGTTCCGATCCAGCAGGT 59.421 61.111 0.00 0.00 35.89 4.00
4039 5202 2.892425 GCGTTCCGATCCAGCAGG 60.892 66.667 0.00 0.00 0.00 4.85
4040 5203 2.892425 GGCGTTCCGATCCAGCAG 60.892 66.667 0.00 0.00 0.00 4.24
4041 5204 4.467084 GGGCGTTCCGATCCAGCA 62.467 66.667 0.00 0.00 0.00 4.41
4142 5305 3.207669 CTGCAGCTTCATCCCGCC 61.208 66.667 0.00 0.00 0.00 6.13
4143 5306 3.885521 GCTGCAGCTTCATCCCGC 61.886 66.667 31.33 0.78 38.21 6.13
4163 5326 2.827190 ATCGCCCACATGCAGCAG 60.827 61.111 0.00 0.00 0.00 4.24
4164 5327 3.135457 CATCGCCCACATGCAGCA 61.135 61.111 0.00 0.00 0.00 4.41
4165 5328 3.896133 CCATCGCCCACATGCAGC 61.896 66.667 0.00 0.00 0.00 5.25
4166 5329 3.214123 CCCATCGCCCACATGCAG 61.214 66.667 0.00 0.00 0.00 4.41
4204 5367 2.278596 CGTAGTGGCCATCGACGG 60.279 66.667 23.17 0.00 32.20 4.79
4205 5368 2.278596 CCGTAGTGGCCATCGACG 60.279 66.667 23.62 23.62 34.69 5.12
4214 5377 2.505982 CCCATCTGGCCGTAGTGG 59.494 66.667 0.00 3.62 42.50 4.00
4215 5378 2.505982 CCCCATCTGGCCGTAGTG 59.494 66.667 0.00 0.00 0.00 2.74
4216 5379 2.768344 CCCCCATCTGGCCGTAGT 60.768 66.667 0.00 0.00 0.00 2.73
4217 5380 2.768344 ACCCCCATCTGGCCGTAG 60.768 66.667 0.00 0.00 0.00 3.51
4218 5381 3.087253 CACCCCCATCTGGCCGTA 61.087 66.667 0.00 0.00 0.00 4.02
4221 5384 4.447342 CACCACCCCCATCTGGCC 62.447 72.222 0.00 0.00 0.00 5.36
4222 5385 4.447342 CCACCACCCCCATCTGGC 62.447 72.222 0.00 0.00 0.00 4.85
4223 5386 4.447342 GCCACCACCCCCATCTGG 62.447 72.222 0.00 0.00 0.00 3.86
4224 5387 4.802051 CGCCACCACCCCCATCTG 62.802 72.222 0.00 0.00 0.00 2.90
4275 5438 2.124695 GGTTCTCATGACGCCCCC 60.125 66.667 0.00 0.00 0.00 5.40
4276 5439 2.511600 CGGTTCTCATGACGCCCC 60.512 66.667 0.00 0.00 0.00 5.80
4277 5440 2.511600 CCGGTTCTCATGACGCCC 60.512 66.667 0.00 0.00 0.00 6.13
4278 5441 3.195698 GCCGGTTCTCATGACGCC 61.196 66.667 1.90 0.00 0.00 5.68
4279 5442 3.554692 CGCCGGTTCTCATGACGC 61.555 66.667 1.90 0.00 0.00 5.19
4280 5443 2.158959 GTCGCCGGTTCTCATGACG 61.159 63.158 1.90 0.00 0.00 4.35
4281 5444 2.158959 CGTCGCCGGTTCTCATGAC 61.159 63.158 1.90 0.00 0.00 3.06
4282 5445 2.180769 CGTCGCCGGTTCTCATGA 59.819 61.111 1.90 0.00 0.00 3.07
4414 5577 1.229690 TACTTGGCCAGCCCCTACA 60.230 57.895 5.11 0.00 34.56 2.74
4446 5609 4.778415 CCTCGTCACAGCGGTCCG 62.778 72.222 6.99 6.99 0.00 4.79
4466 5629 3.703127 GTCACCGGGGTCCTCCAC 61.703 72.222 2.12 0.00 37.22 4.02
4473 5636 3.602030 AGAGGAGGTCACCGGGGT 61.602 66.667 2.12 0.00 34.73 4.95
4483 5646 1.418334 CATCTACACCCCAGAGGAGG 58.582 60.000 0.00 0.00 39.89 4.30
4490 5653 3.792736 GCCGCCATCTACACCCCA 61.793 66.667 0.00 0.00 0.00 4.96
4571 5734 3.077556 CTGTCCTCCCCACCCGAG 61.078 72.222 0.00 0.00 0.00 4.63
4590 5753 4.083862 GACCCTCTCCACCACGCC 62.084 72.222 0.00 0.00 0.00 5.68
4591 5754 3.302347 CTGACCCTCTCCACCACGC 62.302 68.421 0.00 0.00 0.00 5.34
4592 5755 2.973899 CTGACCCTCTCCACCACG 59.026 66.667 0.00 0.00 0.00 4.94
4593 5756 2.665603 GCTGACCCTCTCCACCAC 59.334 66.667 0.00 0.00 0.00 4.16
4594 5757 2.997315 CGCTGACCCTCTCCACCA 60.997 66.667 0.00 0.00 0.00 4.17
4595 5758 3.775654 CCGCTGACCCTCTCCACC 61.776 72.222 0.00 0.00 0.00 4.61
4596 5759 4.459089 GCCGCTGACCCTCTCCAC 62.459 72.222 0.00 0.00 0.00 4.02
4599 5762 4.803426 CACGCCGCTGACCCTCTC 62.803 72.222 0.00 0.00 0.00 3.20
4610 5773 3.019003 AATCCTCTCCACCACGCCG 62.019 63.158 0.00 0.00 0.00 6.46
4611 5774 1.450312 CAATCCTCTCCACCACGCC 60.450 63.158 0.00 0.00 0.00 5.68
4612 5775 1.450312 CCAATCCTCTCCACCACGC 60.450 63.158 0.00 0.00 0.00 5.34
4613 5776 1.450312 GCCAATCCTCTCCACCACG 60.450 63.158 0.00 0.00 0.00 4.94
4614 5777 1.450312 CGCCAATCCTCTCCACCAC 60.450 63.158 0.00 0.00 0.00 4.16
4615 5778 2.669133 CCGCCAATCCTCTCCACCA 61.669 63.158 0.00 0.00 0.00 4.17
4616 5779 2.190578 CCGCCAATCCTCTCCACC 59.809 66.667 0.00 0.00 0.00 4.61
4617 5780 2.514824 GCCGCCAATCCTCTCCAC 60.515 66.667 0.00 0.00 0.00 4.02
4618 5781 4.161295 CGCCGCCAATCCTCTCCA 62.161 66.667 0.00 0.00 0.00 3.86
4664 5827 4.802051 CCACCCACCCCATCGCTG 62.802 72.222 0.00 0.00 0.00 5.18
4667 5830 4.424711 CCACCACCCACCCCATCG 62.425 72.222 0.00 0.00 0.00 3.84
4668 5831 3.264845 ACCACCACCCACCCCATC 61.265 66.667 0.00 0.00 0.00 3.51
4669 5832 3.589542 CACCACCACCCACCCCAT 61.590 66.667 0.00 0.00 0.00 4.00
4679 5842 0.391528 CGATCATGTCTGCACCACCA 60.392 55.000 0.00 0.00 0.00 4.17
4682 5845 0.612744 TTCCGATCATGTCTGCACCA 59.387 50.000 0.00 0.00 0.00 4.17
4685 5848 1.550072 TCAGTTCCGATCATGTCTGCA 59.450 47.619 0.00 0.00 0.00 4.41
4696 5859 4.720046 AGTATCAGATAGCTCAGTTCCGA 58.280 43.478 0.00 0.00 0.00 4.55
4703 5866 3.560239 CGGAGGGAGTATCAGATAGCTCA 60.560 52.174 15.94 0.00 36.25 4.26
4706 5869 2.750712 GACGGAGGGAGTATCAGATAGC 59.249 54.545 0.00 0.00 36.25 2.97
4710 5873 0.179026 CGGACGGAGGGAGTATCAGA 60.179 60.000 0.00 0.00 36.25 3.27
4718 5881 0.760572 AACTTTTTCGGACGGAGGGA 59.239 50.000 0.00 0.00 0.00 4.20
4719 5882 1.265905 CAAACTTTTTCGGACGGAGGG 59.734 52.381 0.00 0.00 0.00 4.30
4720 5883 1.944709 ACAAACTTTTTCGGACGGAGG 59.055 47.619 0.00 0.00 0.00 4.30
4721 5884 2.032290 GGACAAACTTTTTCGGACGGAG 60.032 50.000 0.00 0.00 0.00 4.63
4723 5886 1.944709 AGGACAAACTTTTTCGGACGG 59.055 47.619 0.00 0.00 0.00 4.79
4724 5887 3.064271 TGAAGGACAAACTTTTTCGGACG 59.936 43.478 0.00 0.00 0.00 4.79
4737 5900 7.828717 TGCTAGATACATTCATTTGAAGGACAA 59.171 33.333 11.51 0.00 37.99 3.18
4739 5902 7.497249 AGTGCTAGATACATTCATTTGAAGGAC 59.503 37.037 11.51 1.01 37.99 3.85
4740 5903 7.568349 AGTGCTAGATACATTCATTTGAAGGA 58.432 34.615 11.51 0.00 37.99 3.36
4741 5904 7.798596 AGTGCTAGATACATTCATTTGAAGG 57.201 36.000 3.59 3.59 41.16 3.46
4743 5906 9.890629 ACTTAGTGCTAGATACATTCATTTGAA 57.109 29.630 0.00 0.00 38.56 2.69
4744 5907 9.890629 AACTTAGTGCTAGATACATTCATTTGA 57.109 29.630 0.00 0.00 0.00 2.69
4762 5925 6.505272 GGATGTACCTAGCACTAACTTAGTG 58.495 44.000 20.51 20.51 45.68 2.74
4763 5926 6.192773 TGGATGTACCTAGCACTAACTTAGT 58.807 40.000 0.00 0.00 38.44 2.24
4764 5927 6.710597 TGGATGTACCTAGCACTAACTTAG 57.289 41.667 0.00 0.00 39.86 2.18
4765 5928 7.670605 AATGGATGTACCTAGCACTAACTTA 57.329 36.000 0.00 0.00 39.86 2.24
4767 5930 6.156256 TCAAATGGATGTACCTAGCACTAACT 59.844 38.462 0.00 0.00 39.86 2.24
4769 5932 6.408092 CCTCAAATGGATGTACCTAGCACTAA 60.408 42.308 0.00 0.00 39.86 2.24
4770 5933 5.070446 CCTCAAATGGATGTACCTAGCACTA 59.930 44.000 0.00 0.00 39.86 2.74
4773 5936 4.037222 TCCTCAAATGGATGTACCTAGCA 58.963 43.478 0.00 0.00 39.86 3.49
4774 5937 4.636249 CTCCTCAAATGGATGTACCTAGC 58.364 47.826 0.00 0.00 39.86 3.42
4775 5938 4.101585 TGCTCCTCAAATGGATGTACCTAG 59.898 45.833 0.00 0.00 39.86 3.02
4776 5939 4.037222 TGCTCCTCAAATGGATGTACCTA 58.963 43.478 0.00 0.00 39.86 3.08
4777 5940 2.846206 TGCTCCTCAAATGGATGTACCT 59.154 45.455 0.00 0.00 39.86 3.08
4780 5943 3.054139 AGCTTGCTCCTCAAATGGATGTA 60.054 43.478 0.00 0.00 35.30 2.29
4782 5945 2.376109 AGCTTGCTCCTCAAATGGATG 58.624 47.619 0.00 0.00 35.30 3.51
4783 5946 2.758979 CAAGCTTGCTCCTCAAATGGAT 59.241 45.455 14.65 0.00 35.30 3.41
4784 5947 2.165167 CAAGCTTGCTCCTCAAATGGA 58.835 47.619 14.65 0.00 33.65 3.41
4786 5949 1.203994 CCCAAGCTTGCTCCTCAAATG 59.796 52.381 21.43 3.08 33.65 2.32
4787 5950 1.076024 TCCCAAGCTTGCTCCTCAAAT 59.924 47.619 21.43 0.00 33.65 2.32
4788 5951 0.478072 TCCCAAGCTTGCTCCTCAAA 59.522 50.000 21.43 0.00 33.65 2.69
4789 5952 0.250901 GTCCCAAGCTTGCTCCTCAA 60.251 55.000 21.43 0.00 0.00 3.02
4790 5953 1.376466 GTCCCAAGCTTGCTCCTCA 59.624 57.895 21.43 0.00 0.00 3.86
4791 5954 0.250901 TTGTCCCAAGCTTGCTCCTC 60.251 55.000 21.43 9.19 0.00 3.71
4792 5955 0.251077 CTTGTCCCAAGCTTGCTCCT 60.251 55.000 21.43 0.00 0.00 3.69
4793 5956 1.871126 GCTTGTCCCAAGCTTGCTCC 61.871 60.000 21.43 10.31 40.01 4.70
4794 5957 1.583477 GCTTGTCCCAAGCTTGCTC 59.417 57.895 21.43 12.83 40.01 4.26
4795 5958 3.769201 GCTTGTCCCAAGCTTGCT 58.231 55.556 21.43 0.00 40.01 3.91
4803 5966 0.536460 GTCCGGAAAAGCTTGTCCCA 60.536 55.000 26.94 13.18 0.00 4.37
4805 5968 1.574702 CCGTCCGGAAAAGCTTGTCC 61.575 60.000 24.00 24.00 37.50 4.02
4806 5969 0.601841 TCCGTCCGGAAAAGCTTGTC 60.602 55.000 5.23 8.23 42.05 3.18
4807 5970 0.602905 CTCCGTCCGGAAAAGCTTGT 60.603 55.000 5.23 0.00 44.66 3.16
4808 5971 1.298859 CCTCCGTCCGGAAAAGCTTG 61.299 60.000 5.23 0.00 44.66 4.01
4809 5972 1.003718 CCTCCGTCCGGAAAAGCTT 60.004 57.895 5.23 0.00 44.66 3.74
4810 5973 2.663196 CCTCCGTCCGGAAAAGCT 59.337 61.111 5.23 0.00 44.66 3.74
4814 5977 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
4815 5978 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
4816 5979 2.273449 GTACTCCCTCCGTCCGGA 59.727 66.667 0.00 0.00 42.90 5.14
4818 5981 1.252904 TTTGGTACTCCCTCCGTCCG 61.253 60.000 0.00 0.00 0.00 4.79
4819 5982 1.201424 ATTTGGTACTCCCTCCGTCC 58.799 55.000 0.00 0.00 0.00 4.79
4820 5983 2.629051 CAATTTGGTACTCCCTCCGTC 58.371 52.381 0.00 0.00 0.00 4.79
4821 5984 1.280998 CCAATTTGGTACTCCCTCCGT 59.719 52.381 7.31 0.00 31.35 4.69
4822 5985 2.038387 CCAATTTGGTACTCCCTCCG 57.962 55.000 7.31 0.00 31.35 4.63
4829 5992 7.202251 AACCCTAGTTTCTACCAATTTGGTACT 60.202 37.037 21.76 20.87 40.65 2.73
4831 5994 7.017850 AGAACCCTAGTTTCTACCAATTTGGTA 59.982 37.037 23.53 23.53 42.54 3.25
4832 5995 5.960704 AACCCTAGTTTCTACCAATTTGGT 58.039 37.500 23.83 23.83 43.60 3.67
4833 5996 6.246163 AGAACCCTAGTTTCTACCAATTTGG 58.754 40.000 14.02 14.02 39.04 3.28
4834 5997 8.101419 AGTAGAACCCTAGTTTCTACCAATTTG 58.899 37.037 24.63 0.00 37.34 2.32
4860 8439 1.048724 CAATCTCCGCCCTAGACCCA 61.049 60.000 0.00 0.00 0.00 4.51
5111 8693 2.158460 GGCCTGGCCCAGTTATCTTATT 60.158 50.000 27.77 0.00 44.06 1.40
5182 8765 4.277423 ACCTGACCCAAAATAAGTGTTTCG 59.723 41.667 0.00 0.00 0.00 3.46
5339 8930 5.306678 CCAAGCCTTCCTATCTCTACTCAAT 59.693 44.000 0.00 0.00 0.00 2.57
5341 8932 4.219115 CCAAGCCTTCCTATCTCTACTCA 58.781 47.826 0.00 0.00 0.00 3.41
5342 8933 3.006430 GCCAAGCCTTCCTATCTCTACTC 59.994 52.174 0.00 0.00 0.00 2.59
5344 8935 2.700897 TGCCAAGCCTTCCTATCTCTAC 59.299 50.000 0.00 0.00 0.00 2.59
5346 8937 1.488393 GTGCCAAGCCTTCCTATCTCT 59.512 52.381 0.00 0.00 0.00 3.10
5347 8938 1.808133 CGTGCCAAGCCTTCCTATCTC 60.808 57.143 0.00 0.00 0.00 2.75
5348 8939 0.179000 CGTGCCAAGCCTTCCTATCT 59.821 55.000 0.00 0.00 0.00 1.98
5349 8940 0.107654 ACGTGCCAAGCCTTCCTATC 60.108 55.000 0.00 0.00 0.00 2.08
5350 8941 0.392998 CACGTGCCAAGCCTTCCTAT 60.393 55.000 0.82 0.00 0.00 2.57
5351 8942 1.003839 CACGTGCCAAGCCTTCCTA 60.004 57.895 0.82 0.00 0.00 2.94
5352 8943 2.281761 CACGTGCCAAGCCTTCCT 60.282 61.111 0.82 0.00 0.00 3.36
5355 8946 1.066454 GTTAAACACGTGCCAAGCCTT 59.934 47.619 17.22 0.00 0.00 4.35
5357 8948 0.382515 TGTTAAACACGTGCCAAGCC 59.617 50.000 17.22 0.00 0.00 4.35
5358 8949 2.116366 CTTGTTAAACACGTGCCAAGC 58.884 47.619 17.22 3.46 0.00 4.01
5359 8950 3.414549 ACTTGTTAAACACGTGCCAAG 57.585 42.857 17.22 19.74 36.32 3.61
5362 8953 4.275838 TGTTACTTGTTAAACACGTGCC 57.724 40.909 17.22 0.00 32.59 5.01
5363 8954 6.251801 ACATTTGTTACTTGTTAAACACGTGC 59.748 34.615 17.22 0.00 35.43 5.34
5364 8955 7.728580 ACATTTGTTACTTGTTAAACACGTG 57.271 32.000 15.48 15.48 35.43 4.49
5365 8956 8.449397 TGTACATTTGTTACTTGTTAAACACGT 58.551 29.630 0.00 0.00 35.43 4.49
5366 8957 8.823584 TGTACATTTGTTACTTGTTAAACACG 57.176 30.769 0.00 0.00 35.43 4.49
5490 9082 6.494893 AGCTGAAGTAAATTTATTGTCGCA 57.505 33.333 0.31 0.00 0.00 5.10
5643 10273 8.918202 TTTTCTCAGAGGTGTGTACAATTTAT 57.082 30.769 0.00 0.00 0.00 1.40
5752 10384 9.965824 CAAATGTACTGAAATAACTTGGTTTCT 57.034 29.630 0.00 0.00 35.80 2.52
5824 10456 2.295349 GGGCATTCCAGATGCAAGTATG 59.705 50.000 12.45 0.00 46.21 2.39
5838 11602 1.202290 CCAACGCATTGTAGGGCATTC 60.202 52.381 0.00 0.00 33.60 2.67
6004 11768 5.649782 AAATAAACAGGACAATGAGGCAG 57.350 39.130 0.00 0.00 0.00 4.85
6261 12191 6.210385 ACATGATAGTGAATAGTCTGCTAGGG 59.790 42.308 0.00 0.00 0.00 3.53
6299 12229 6.000219 ACAATACATAAAGCAGGGCTAGATG 59.000 40.000 0.00 9.48 38.25 2.90
6311 12241 9.342308 ACCATGAATACAGGACAATACATAAAG 57.658 33.333 0.00 0.00 0.00 1.85
6322 12252 3.550437 AGCTGACCATGAATACAGGAC 57.450 47.619 0.00 0.00 0.00 3.85
6466 12406 0.108945 GGCATCAAGAGGCTGCAAAC 60.109 55.000 6.67 0.00 38.32 2.93
6738 12678 3.411351 CCGTGTCCTGCGTTTCCG 61.411 66.667 0.00 0.00 37.07 4.30
6851 12793 8.531530 CCGAATACGAAATTGAATTTTTCATCC 58.468 33.333 4.46 0.00 39.67 3.51
6852 12794 8.531530 CCCGAATACGAAATTGAATTTTTCATC 58.468 33.333 4.46 0.74 39.67 2.92
6853 12795 8.247562 TCCCGAATACGAAATTGAATTTTTCAT 58.752 29.630 4.46 0.00 39.67 2.57
6854 12796 7.539366 GTCCCGAATACGAAATTGAATTTTTCA 59.461 33.333 4.46 0.00 42.66 2.69
6855 12797 7.253190 CGTCCCGAATACGAAATTGAATTTTTC 60.253 37.037 4.46 4.06 42.90 2.29
6856 12798 6.525280 CGTCCCGAATACGAAATTGAATTTTT 59.475 34.615 4.46 0.00 42.90 1.94
6885 12831 4.019051 TGGCTTCAGAATTTCAGATCTGGA 60.019 41.667 22.42 11.83 42.62 3.86
6964 12911 1.135489 CACACCAATCATGCAGCTGAC 60.135 52.381 20.43 9.67 0.00 3.51
7021 12968 4.148825 CCCTTCCTCTGCCCGTCG 62.149 72.222 0.00 0.00 0.00 5.12
7064 13017 0.524862 CTTCAGCCTGCAACACATCC 59.475 55.000 0.00 0.00 0.00 3.51
7066 13019 1.859427 CGCTTCAGCCTGCAACACAT 61.859 55.000 0.00 0.00 37.91 3.21
7067 13020 2.545596 CGCTTCAGCCTGCAACACA 61.546 57.895 0.00 0.00 37.91 3.72
7068 13021 2.180131 CTCGCTTCAGCCTGCAACAC 62.180 60.000 0.00 0.00 37.91 3.32
7071 13024 3.052082 GCTCGCTTCAGCCTGCAA 61.052 61.111 5.98 0.00 37.91 4.08
7076 13029 1.963338 ACAAGTGCTCGCTTCAGCC 60.963 57.895 0.00 0.00 38.80 4.85
7077 13030 1.206072 CACAAGTGCTCGCTTCAGC 59.794 57.895 0.00 0.00 40.13 4.26
7292 13356 0.891904 TTAGGTGAAAAGTGCCCGGC 60.892 55.000 1.04 1.04 0.00 6.13
7313 13377 9.071221 CACCTGTTTTTAAAAAGAAAAATTGGC 57.929 29.630 13.58 0.00 39.71 4.52
7327 13391 9.675464 ACGATATAGGAAATCACCTGTTTTTAA 57.325 29.630 0.00 0.00 40.81 1.52
7328 13392 9.675464 AACGATATAGGAAATCACCTGTTTTTA 57.325 29.630 0.00 0.00 40.81 1.52
7336 13474 7.282450 ACCAAAGAAACGATATAGGAAATCACC 59.718 37.037 0.00 0.00 0.00 4.02
7351 13489 2.467305 CGTTGATTGCACCAAAGAAACG 59.533 45.455 7.78 4.50 34.22 3.60
7420 13559 8.722480 TTCTAATGACATAAGAACATGGTGAG 57.278 34.615 0.00 0.00 0.00 3.51
7424 13563 7.095060 CGGGATTCTAATGACATAAGAACATGG 60.095 40.741 0.00 0.00 32.38 3.66
7451 13590 3.401033 TCTTGCGGACTCTTTGATTCA 57.599 42.857 0.00 0.00 0.00 2.57
7466 13605 0.928229 CGCAGGGTTACGTATCTTGC 59.072 55.000 17.52 17.52 0.00 4.01
7468 13607 3.131577 TGATTCGCAGGGTTACGTATCTT 59.868 43.478 0.00 0.00 37.11 2.40
7507 13646 4.248859 ACACCTTTGATTCGATGAGTCTG 58.751 43.478 0.00 0.00 0.00 3.51
7511 13650 3.372206 GTGGACACCTTTGATTCGATGAG 59.628 47.826 0.00 0.00 0.00 2.90
7526 13665 6.317088 CACAATTCATATCTTGTGTGGACAC 58.683 40.000 2.81 2.81 44.51 3.67
7570 13709 1.281899 GAGATTACTGCTGTGACCGC 58.718 55.000 6.48 0.00 0.00 5.68
7643 13782 1.017177 TAACAGCGACGGCATTCACC 61.017 55.000 0.00 0.00 43.41 4.02
7678 13817 2.044280 TCCCCATCCATGGCCTCA 59.956 61.111 6.96 0.00 46.70 3.86
7679 13818 2.517919 GTCCCCATCCATGGCCTC 59.482 66.667 6.96 0.00 46.70 4.70
7680 13819 3.105928 GGTCCCCATCCATGGCCT 61.106 66.667 6.96 0.00 46.70 5.19
7691 13830 4.436998 CGTGTCAGCGAGGTCCCC 62.437 72.222 0.00 0.00 0.00 4.81


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.