Multiple sequence alignment - TraesCS5A01G060700
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5A01G060700 | chr5A | 100.000 | 7729 | 0 | 0 | 1 | 7729 | 64381452 | 64373724 | 0.000000e+00 | 14273.0 |
1 | TraesCS5A01G060700 | chr5A | 92.709 | 2167 | 109 | 16 | 2571 | 4718 | 245959804 | 245957668 | 0.000000e+00 | 3081.0 |
2 | TraesCS5A01G060700 | chr5A | 96.242 | 479 | 3 | 2 | 2572 | 3049 | 115024751 | 115024287 | 0.000000e+00 | 771.0 |
3 | TraesCS5A01G060700 | chr5A | 99.112 | 338 | 3 | 0 | 4839 | 5176 | 64378882 | 64378545 | 6.630000e-170 | 608.0 |
4 | TraesCS5A01G060700 | chr5A | 95.280 | 339 | 15 | 1 | 4839 | 5176 | 245959804 | 245959466 | 3.170000e-148 | 536.0 |
5 | TraesCS5A01G060700 | chr5A | 82.110 | 218 | 33 | 6 | 4828 | 5042 | 484439677 | 484439463 | 1.710000e-41 | 182.0 |
6 | TraesCS5A01G060700 | chr5D | 94.309 | 2126 | 81 | 25 | 5627 | 7729 | 71896426 | 71894318 | 0.000000e+00 | 3219.0 |
7 | TraesCS5A01G060700 | chr5D | 88.153 | 2144 | 185 | 31 | 2571 | 4657 | 551309554 | 551311685 | 0.000000e+00 | 2488.0 |
8 | TraesCS5A01G060700 | chr5D | 93.498 | 1615 | 92 | 8 | 963 | 2571 | 71899485 | 71897878 | 0.000000e+00 | 2388.0 |
9 | TraesCS5A01G060700 | chr5D | 89.610 | 462 | 29 | 9 | 5171 | 5632 | 71897882 | 71897440 | 3.130000e-158 | 569.0 |
10 | TraesCS5A01G060700 | chr5D | 95.029 | 342 | 10 | 5 | 1 | 335 | 71900628 | 71900287 | 1.480000e-146 | 531.0 |
11 | TraesCS5A01G060700 | chr5D | 90.608 | 181 | 8 | 2 | 754 | 934 | 71899724 | 71899553 | 1.680000e-56 | 231.0 |
12 | TraesCS5A01G060700 | chr5D | 83.178 | 214 | 32 | 4 | 4828 | 5039 | 168507421 | 168507632 | 7.920000e-45 | 193.0 |
13 | TraesCS5A01G060700 | chr5D | 86.857 | 175 | 18 | 2 | 351 | 525 | 71900328 | 71900159 | 2.850000e-44 | 191.0 |
14 | TraesCS5A01G060700 | chr5D | 94.624 | 93 | 2 | 1 | 652 | 744 | 71899883 | 71899794 | 2.910000e-29 | 141.0 |
15 | TraesCS5A01G060700 | chr5D | 81.152 | 191 | 18 | 11 | 492 | 667 | 71900086 | 71899899 | 3.760000e-28 | 137.0 |
16 | TraesCS5A01G060700 | chr5D | 95.833 | 48 | 2 | 0 | 439 | 486 | 491432613 | 491432660 | 2.310000e-10 | 78.7 |
17 | TraesCS5A01G060700 | chr5D | 100.000 | 37 | 0 | 0 | 450 | 486 | 538438628 | 538438592 | 1.390000e-07 | 69.4 |
18 | TraesCS5A01G060700 | chr5D | 100.000 | 34 | 0 | 0 | 492 | 525 | 71900139 | 71900106 | 6.480000e-06 | 63.9 |
19 | TraesCS5A01G060700 | chr5D | 89.583 | 48 | 5 | 0 | 439 | 486 | 395175885 | 395175838 | 2.330000e-05 | 62.1 |
20 | TraesCS5A01G060700 | chr4D | 89.719 | 2062 | 161 | 25 | 2575 | 4621 | 357411758 | 357413783 | 0.000000e+00 | 2586.0 |
21 | TraesCS5A01G060700 | chr4D | 76.589 | 299 | 36 | 20 | 4325 | 4621 | 8609425 | 8609159 | 4.870000e-27 | 134.0 |
22 | TraesCS5A01G060700 | chr4D | 95.833 | 48 | 2 | 0 | 439 | 486 | 98451630 | 98451677 | 2.310000e-10 | 78.7 |
23 | TraesCS5A01G060700 | chr4D | 95.122 | 41 | 2 | 0 | 446 | 486 | 396175690 | 396175730 | 1.800000e-06 | 65.8 |
24 | TraesCS5A01G060700 | chr5B | 94.139 | 1638 | 91 | 5 | 935 | 2571 | 82464314 | 82465947 | 0.000000e+00 | 2488.0 |
25 | TraesCS5A01G060700 | chr5B | 92.111 | 1369 | 52 | 19 | 5826 | 7172 | 82467720 | 82469054 | 0.000000e+00 | 1879.0 |
26 | TraesCS5A01G060700 | chr5B | 90.181 | 662 | 40 | 12 | 5171 | 5824 | 82465943 | 82466587 | 0.000000e+00 | 839.0 |
27 | TraesCS5A01G060700 | chr5B | 88.184 | 694 | 54 | 17 | 1 | 667 | 82462557 | 82463249 | 0.000000e+00 | 802.0 |
28 | TraesCS5A01G060700 | chr5B | 88.642 | 405 | 26 | 8 | 7327 | 7729 | 82469384 | 82469770 | 7.020000e-130 | 475.0 |
29 | TraesCS5A01G060700 | chr5B | 87.755 | 196 | 12 | 5 | 648 | 841 | 82463262 | 82463447 | 1.310000e-52 | 219.0 |
30 | TraesCS5A01G060700 | chr5B | 77.936 | 281 | 52 | 5 | 4333 | 4603 | 328208488 | 328208768 | 4.800000e-37 | 167.0 |
31 | TraesCS5A01G060700 | chr5B | 91.000 | 100 | 7 | 1 | 834 | 931 | 82464175 | 82464274 | 4.870000e-27 | 134.0 |
32 | TraesCS5A01G060700 | chr5B | 89.474 | 57 | 3 | 2 | 358 | 414 | 82462860 | 82462913 | 1.390000e-07 | 69.4 |
33 | TraesCS5A01G060700 | chr5B | 89.583 | 48 | 5 | 0 | 439 | 486 | 668537170 | 668537217 | 2.330000e-05 | 62.1 |
34 | TraesCS5A01G060700 | chr4A | 89.001 | 1591 | 128 | 20 | 2572 | 4147 | 563211694 | 563210136 | 0.000000e+00 | 1925.0 |
35 | TraesCS5A01G060700 | chr4A | 78.629 | 992 | 150 | 42 | 2559 | 3509 | 138452378 | 138451408 | 1.110000e-167 | 601.0 |
36 | TraesCS5A01G060700 | chr4A | 93.496 | 123 | 8 | 0 | 4716 | 4838 | 590222037 | 590222159 | 4.760000e-42 | 183.0 |
37 | TraesCS5A01G060700 | chr4A | 83.562 | 146 | 13 | 7 | 4325 | 4460 | 563209970 | 563209826 | 8.140000e-25 | 126.0 |
38 | TraesCS5A01G060700 | chr4A | 84.536 | 97 | 13 | 2 | 2571 | 2666 | 722840131 | 722840226 | 2.300000e-15 | 95.3 |
39 | TraesCS5A01G060700 | chr4A | 95.833 | 48 | 2 | 0 | 439 | 486 | 477880072 | 477880025 | 2.310000e-10 | 78.7 |
40 | TraesCS5A01G060700 | chr4A | 95.833 | 48 | 2 | 0 | 439 | 486 | 581944298 | 581944345 | 2.310000e-10 | 78.7 |
41 | TraesCS5A01G060700 | chr4A | 78.195 | 133 | 21 | 7 | 4587 | 4718 | 729605021 | 729605146 | 2.310000e-10 | 78.7 |
42 | TraesCS5A01G060700 | chr4A | 79.167 | 120 | 18 | 6 | 4599 | 4718 | 674440929 | 674441041 | 8.320000e-10 | 76.8 |
43 | TraesCS5A01G060700 | chr3D | 87.384 | 1506 | 183 | 7 | 2598 | 4100 | 246591700 | 246590199 | 0.000000e+00 | 1722.0 |
44 | TraesCS5A01G060700 | chr3D | 88.462 | 286 | 29 | 4 | 4332 | 4615 | 135246756 | 135246473 | 7.430000e-90 | 342.0 |
45 | TraesCS5A01G060700 | chr3D | 88.018 | 217 | 18 | 7 | 4828 | 5039 | 182650096 | 182650309 | 4.630000e-62 | 250.0 |
46 | TraesCS5A01G060700 | chr3D | 94.167 | 120 | 7 | 0 | 4715 | 4834 | 107671081 | 107670962 | 4.760000e-42 | 183.0 |
47 | TraesCS5A01G060700 | chr3D | 81.651 | 218 | 34 | 6 | 4828 | 5042 | 135244357 | 135244143 | 7.970000e-40 | 176.0 |
48 | TraesCS5A01G060700 | chr1D | 88.519 | 1411 | 149 | 8 | 2572 | 3980 | 228812243 | 228810844 | 0.000000e+00 | 1696.0 |
49 | TraesCS5A01G060700 | chr1D | 87.696 | 1341 | 160 | 3 | 2809 | 4148 | 321681947 | 321680611 | 0.000000e+00 | 1557.0 |
50 | TraesCS5A01G060700 | chr1D | 79.224 | 722 | 129 | 16 | 1463 | 2173 | 407216504 | 407215793 | 4.190000e-132 | 483.0 |
51 | TraesCS5A01G060700 | chr1D | 92.188 | 128 | 6 | 4 | 4709 | 4834 | 470925368 | 470925493 | 2.220000e-40 | 178.0 |
52 | TraesCS5A01G060700 | chr1D | 91.667 | 48 | 4 | 0 | 439 | 486 | 318133129 | 318133176 | 5.010000e-07 | 67.6 |
53 | TraesCS5A01G060700 | chr1D | 89.583 | 48 | 5 | 0 | 439 | 486 | 411697278 | 411697231 | 2.330000e-05 | 62.1 |
54 | TraesCS5A01G060700 | chr1D | 91.111 | 45 | 3 | 1 | 442 | 486 | 347276493 | 347276450 | 8.380000e-05 | 60.2 |
55 | TraesCS5A01G060700 | chr3B | 85.456 | 1602 | 197 | 24 | 2571 | 4148 | 181308408 | 181306819 | 0.000000e+00 | 1635.0 |
56 | TraesCS5A01G060700 | chr3B | 87.442 | 215 | 21 | 6 | 4828 | 5039 | 406544853 | 406545064 | 7.750000e-60 | 243.0 |
57 | TraesCS5A01G060700 | chr3B | 94.118 | 119 | 5 | 2 | 4716 | 4833 | 52425386 | 52425269 | 6.160000e-41 | 180.0 |
58 | TraesCS5A01G060700 | chr3B | 81.250 | 112 | 13 | 7 | 4608 | 4718 | 671570162 | 671570058 | 4.970000e-12 | 84.2 |
59 | TraesCS5A01G060700 | chr3B | 97.674 | 43 | 1 | 0 | 444 | 486 | 59209606 | 59209564 | 2.990000e-09 | 75.0 |
60 | TraesCS5A01G060700 | chr6D | 84.515 | 1608 | 190 | 37 | 2581 | 4148 | 143487759 | 143486171 | 0.000000e+00 | 1535.0 |
61 | TraesCS5A01G060700 | chr2D | 87.579 | 1264 | 153 | 4 | 2886 | 4148 | 546809374 | 546810634 | 0.000000e+00 | 1461.0 |
62 | TraesCS5A01G060700 | chr2D | 81.019 | 432 | 60 | 11 | 4287 | 4718 | 26935520 | 26935111 | 2.690000e-84 | 324.0 |
63 | TraesCS5A01G060700 | chr2D | 78.313 | 332 | 58 | 10 | 4344 | 4664 | 194443368 | 194443040 | 1.320000e-47 | 202.0 |
64 | TraesCS5A01G060700 | chr6A | 95.694 | 627 | 26 | 1 | 2572 | 3197 | 489858455 | 489857829 | 0.000000e+00 | 1007.0 |
65 | TraesCS5A01G060700 | chr6A | 84.243 | 806 | 49 | 23 | 3958 | 4718 | 565416531 | 565417303 | 0.000000e+00 | 713.0 |
66 | TraesCS5A01G060700 | chr6A | 95.858 | 338 | 13 | 1 | 4840 | 5176 | 489858455 | 489858118 | 5.270000e-151 | 545.0 |
67 | TraesCS5A01G060700 | chr6A | 94.412 | 340 | 17 | 2 | 4832 | 5170 | 565417301 | 565417639 | 8.890000e-144 | 521.0 |
68 | TraesCS5A01G060700 | chr6A | 93.824 | 340 | 20 | 1 | 4832 | 5170 | 489842931 | 489842592 | 1.920000e-140 | 510.0 |
69 | TraesCS5A01G060700 | chr6A | 78.671 | 286 | 47 | 9 | 4325 | 4600 | 33200434 | 33200715 | 2.220000e-40 | 178.0 |
70 | TraesCS5A01G060700 | chr6A | 93.750 | 48 | 3 | 0 | 439 | 486 | 435875715 | 435875762 | 1.080000e-08 | 73.1 |
71 | TraesCS5A01G060700 | chr3A | 95.894 | 341 | 12 | 2 | 4832 | 5170 | 160079309 | 160079649 | 1.130000e-152 | 551.0 |
72 | TraesCS5A01G060700 | chr3A | 95.238 | 336 | 14 | 2 | 4837 | 5170 | 160077166 | 160077501 | 1.480000e-146 | 531.0 |
73 | TraesCS5A01G060700 | chr3A | 85.591 | 347 | 37 | 4 | 4322 | 4657 | 160078936 | 160079280 | 1.230000e-92 | 351.0 |
74 | TraesCS5A01G060700 | chr3A | 81.271 | 299 | 47 | 1 | 4332 | 4621 | 44234420 | 44234718 | 4.660000e-57 | 233.0 |
75 | TraesCS5A01G060700 | chr3A | 99.153 | 118 | 1 | 0 | 4716 | 4833 | 511745303 | 511745186 | 6.080000e-51 | 213.0 |
76 | TraesCS5A01G060700 | chr3A | 80.591 | 237 | 39 | 7 | 4828 | 5061 | 535187358 | 535187590 | 7.970000e-40 | 176.0 |
77 | TraesCS5A01G060700 | chr2A | 94.985 | 339 | 15 | 2 | 4840 | 5176 | 690313278 | 690312940 | 1.480000e-146 | 531.0 |
78 | TraesCS5A01G060700 | chr2A | 94.169 | 343 | 17 | 3 | 4832 | 5171 | 690311199 | 690310857 | 3.200000e-143 | 520.0 |
79 | TraesCS5A01G060700 | chr2A | 87.685 | 203 | 25 | 0 | 4397 | 4599 | 520560634 | 520560836 | 3.610000e-58 | 237.0 |
80 | TraesCS5A01G060700 | chr2A | 96.154 | 52 | 2 | 0 | 439 | 490 | 745788408 | 745788459 | 1.380000e-12 | 86.1 |
81 | TraesCS5A01G060700 | chr1A | 79.661 | 649 | 124 | 7 | 1519 | 2165 | 502831623 | 502830981 | 1.970000e-125 | 460.0 |
82 | TraesCS5A01G060700 | chr1A | 87.107 | 318 | 37 | 4 | 6448 | 6764 | 502829449 | 502829135 | 2.650000e-94 | 357.0 |
83 | TraesCS5A01G060700 | chr1A | 81.481 | 216 | 32 | 8 | 4828 | 5039 | 103630419 | 103630630 | 3.710000e-38 | 171.0 |
84 | TraesCS5A01G060700 | chr1B | 79.801 | 604 | 119 | 3 | 1563 | 2165 | 547586559 | 547585958 | 3.310000e-118 | 436.0 |
85 | TraesCS5A01G060700 | chr1B | 86.025 | 322 | 43 | 2 | 6448 | 6769 | 547584538 | 547584219 | 2.060000e-90 | 344.0 |
86 | TraesCS5A01G060700 | chr1B | 79.699 | 133 | 19 | 7 | 4587 | 4718 | 57107138 | 57107263 | 1.070000e-13 | 89.8 |
87 | TraesCS5A01G060700 | chr1B | 79.104 | 134 | 18 | 9 | 4587 | 4718 | 328150512 | 328150637 | 4.970000e-12 | 84.2 |
88 | TraesCS5A01G060700 | chr1B | 78.947 | 133 | 19 | 8 | 4587 | 4718 | 289086167 | 289086291 | 1.790000e-11 | 82.4 |
89 | TraesCS5A01G060700 | chr2B | 89.286 | 168 | 13 | 5 | 2571 | 2735 | 107559758 | 107559593 | 1.020000e-48 | 206.0 |
90 | TraesCS5A01G060700 | chr2B | 90.152 | 132 | 9 | 4 | 4704 | 4833 | 412778707 | 412778578 | 1.330000e-37 | 169.0 |
91 | TraesCS5A01G060700 | chr6B | 82.857 | 210 | 26 | 9 | 4838 | 5042 | 233692148 | 233691944 | 6.160000e-41 | 180.0 |
92 | TraesCS5A01G060700 | chr6B | 78.947 | 133 | 20 | 7 | 4587 | 4718 | 395670654 | 395670529 | 4.970000e-12 | 84.2 |
93 | TraesCS5A01G060700 | chr6B | 82.759 | 87 | 9 | 5 | 4631 | 4717 | 594865303 | 594865223 | 1.080000e-08 | 73.1 |
94 | TraesCS5A01G060700 | chr6B | 90.385 | 52 | 5 | 0 | 4666 | 4717 | 284658035 | 284657984 | 1.390000e-07 | 69.4 |
95 | TraesCS5A01G060700 | chr6B | 97.436 | 39 | 1 | 0 | 446 | 484 | 474441116 | 474441078 | 5.010000e-07 | 67.6 |
96 | TraesCS5A01G060700 | chr4B | 92.126 | 127 | 8 | 2 | 4709 | 4834 | 564869592 | 564869467 | 2.220000e-40 | 178.0 |
97 | TraesCS5A01G060700 | chr4B | 78.879 | 232 | 34 | 9 | 4332 | 4551 | 498836783 | 498836555 | 8.090000e-30 | 143.0 |
98 | TraesCS5A01G060700 | chr4B | 97.917 | 48 | 1 | 0 | 439 | 486 | 139763291 | 139763338 | 4.970000e-12 | 84.2 |
99 | TraesCS5A01G060700 | chr4B | 79.487 | 117 | 17 | 6 | 4602 | 4718 | 73278380 | 73278271 | 8.320000e-10 | 76.8 |
100 | TraesCS5A01G060700 | chr4B | 88.679 | 53 | 6 | 0 | 4666 | 4718 | 25898833 | 25898885 | 1.800000e-06 | 65.8 |
101 | TraesCS5A01G060700 | chr7D | 93.277 | 119 | 8 | 0 | 4716 | 4834 | 31949675 | 31949793 | 7.970000e-40 | 176.0 |
102 | TraesCS5A01G060700 | chr7B | 93.333 | 120 | 6 | 2 | 4716 | 4834 | 143329397 | 143329515 | 7.970000e-40 | 176.0 |
103 | TraesCS5A01G060700 | chr7B | 79.699 | 133 | 19 | 7 | 4587 | 4718 | 458785742 | 458785867 | 1.070000e-13 | 89.8 |
104 | TraesCS5A01G060700 | chr7B | 95.918 | 49 | 2 | 0 | 438 | 486 | 612304321 | 612304369 | 6.430000e-11 | 80.5 |
105 | TraesCS5A01G060700 | chr7A | 81.395 | 215 | 34 | 6 | 4828 | 5039 | 13232524 | 13232735 | 3.710000e-38 | 171.0 |
106 | TraesCS5A01G060700 | chr7A | 97.917 | 48 | 1 | 0 | 439 | 486 | 97912716 | 97912669 | 4.970000e-12 | 84.2 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5A01G060700 | chr5A | 64373724 | 64381452 | 7728 | True | 7440.500000 | 14273 | 99.55600 | 1 | 7729 | 2 | chr5A.!!$R3 | 7728 |
1 | TraesCS5A01G060700 | chr5A | 245957668 | 245959804 | 2136 | True | 1808.500000 | 3081 | 93.99450 | 2571 | 5176 | 2 | chr5A.!!$R4 | 2605 |
2 | TraesCS5A01G060700 | chr5D | 551309554 | 551311685 | 2131 | False | 2488.000000 | 2488 | 88.15300 | 2571 | 4657 | 1 | chr5D.!!$F3 | 2086 |
3 | TraesCS5A01G060700 | chr5D | 71894318 | 71900628 | 6310 | True | 830.100000 | 3219 | 91.74300 | 1 | 7729 | 9 | chr5D.!!$R3 | 7728 |
4 | TraesCS5A01G060700 | chr4D | 357411758 | 357413783 | 2025 | False | 2586.000000 | 2586 | 89.71900 | 2575 | 4621 | 1 | chr4D.!!$F2 | 2046 |
5 | TraesCS5A01G060700 | chr5B | 82462557 | 82469770 | 7213 | False | 863.175000 | 2488 | 90.18575 | 1 | 7729 | 8 | chr5B.!!$F3 | 7728 |
6 | TraesCS5A01G060700 | chr4A | 563209826 | 563211694 | 1868 | True | 1025.500000 | 1925 | 86.28150 | 2572 | 4460 | 2 | chr4A.!!$R3 | 1888 |
7 | TraesCS5A01G060700 | chr4A | 138451408 | 138452378 | 970 | True | 601.000000 | 601 | 78.62900 | 2559 | 3509 | 1 | chr4A.!!$R1 | 950 |
8 | TraesCS5A01G060700 | chr3D | 246590199 | 246591700 | 1501 | True | 1722.000000 | 1722 | 87.38400 | 2598 | 4100 | 1 | chr3D.!!$R2 | 1502 |
9 | TraesCS5A01G060700 | chr3D | 135244143 | 135246756 | 2613 | True | 259.000000 | 342 | 85.05650 | 4332 | 5042 | 2 | chr3D.!!$R3 | 710 |
10 | TraesCS5A01G060700 | chr1D | 228810844 | 228812243 | 1399 | True | 1696.000000 | 1696 | 88.51900 | 2572 | 3980 | 1 | chr1D.!!$R1 | 1408 |
11 | TraesCS5A01G060700 | chr1D | 321680611 | 321681947 | 1336 | True | 1557.000000 | 1557 | 87.69600 | 2809 | 4148 | 1 | chr1D.!!$R2 | 1339 |
12 | TraesCS5A01G060700 | chr1D | 407215793 | 407216504 | 711 | True | 483.000000 | 483 | 79.22400 | 1463 | 2173 | 1 | chr1D.!!$R4 | 710 |
13 | TraesCS5A01G060700 | chr3B | 181306819 | 181308408 | 1589 | True | 1635.000000 | 1635 | 85.45600 | 2571 | 4148 | 1 | chr3B.!!$R3 | 1577 |
14 | TraesCS5A01G060700 | chr6D | 143486171 | 143487759 | 1588 | True | 1535.000000 | 1535 | 84.51500 | 2581 | 4148 | 1 | chr6D.!!$R1 | 1567 |
15 | TraesCS5A01G060700 | chr2D | 546809374 | 546810634 | 1260 | False | 1461.000000 | 1461 | 87.57900 | 2886 | 4148 | 1 | chr2D.!!$F1 | 1262 |
16 | TraesCS5A01G060700 | chr6A | 489857829 | 489858455 | 626 | True | 776.000000 | 1007 | 95.77600 | 2572 | 5176 | 2 | chr6A.!!$R2 | 2604 |
17 | TraesCS5A01G060700 | chr6A | 565416531 | 565417639 | 1108 | False | 617.000000 | 713 | 89.32750 | 3958 | 5170 | 2 | chr6A.!!$F3 | 1212 |
18 | TraesCS5A01G060700 | chr3A | 160077166 | 160079649 | 2483 | False | 477.666667 | 551 | 92.24100 | 4322 | 5170 | 3 | chr3A.!!$F3 | 848 |
19 | TraesCS5A01G060700 | chr2A | 690310857 | 690313278 | 2421 | True | 525.500000 | 531 | 94.57700 | 4832 | 5176 | 2 | chr2A.!!$R1 | 344 |
20 | TraesCS5A01G060700 | chr1A | 502829135 | 502831623 | 2488 | True | 408.500000 | 460 | 83.38400 | 1519 | 6764 | 2 | chr1A.!!$R1 | 5245 |
21 | TraesCS5A01G060700 | chr1B | 547584219 | 547586559 | 2340 | True | 390.000000 | 436 | 82.91300 | 1563 | 6769 | 2 | chr1B.!!$R1 | 5206 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
313 | 319 | 0.099436 | CAAGTGCTTGCGCCCTATTC | 59.901 | 55.0 | 4.18 | 0.00 | 33.45 | 1.75 | F |
315 | 321 | 0.107017 | AGTGCTTGCGCCCTATTCAT | 60.107 | 50.0 | 4.18 | 0.00 | 34.43 | 2.57 | F |
871 | 1890 | 0.178891 | AGGGAGAAGGAAGAGGCACA | 60.179 | 55.0 | 0.00 | 0.00 | 0.00 | 4.57 | F |
873 | 1892 | 0.390472 | GGAGAAGGAAGAGGCACACG | 60.390 | 60.0 | 0.00 | 0.00 | 0.00 | 4.49 | F |
1648 | 2722 | 0.458197 | CTTGACGAGCCAGCTCTCTG | 60.458 | 60.0 | 17.06 | 4.95 | 40.69 | 3.35 | F |
2428 | 3510 | 0.512952 | GCGCATGCTTCTTATACGGG | 59.487 | 55.0 | 17.13 | 0.00 | 38.39 | 5.28 | F |
3853 | 5016 | 0.250081 | GAAGAGGATGATGCCGGGTC | 60.250 | 60.0 | 2.18 | 0.00 | 0.00 | 4.46 | F |
3975 | 5138 | 0.031917 | TTCCCCGGCCATAGTGTAGA | 60.032 | 55.0 | 2.24 | 0.00 | 0.00 | 2.59 | F |
4446 | 5609 | 0.105039 | CAAGTACAGCCGGATCTCCC | 59.895 | 60.0 | 5.05 | 0.00 | 0.00 | 4.30 | F |
5368 | 8959 | 0.107654 | GATAGGAAGGCTTGGCACGT | 60.108 | 55.0 | 3.46 | 0.00 | 0.00 | 4.49 | F |
5376 | 8967 | 0.382515 | GGCTTGGCACGTGTTTAACA | 59.617 | 50.0 | 18.38 | 6.20 | 0.00 | 2.41 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1673 | 2747 | 0.389426 | ACACAAGTCGGCGGTATCAC | 60.389 | 55.000 | 7.21 | 0.0 | 0.00 | 3.06 | R |
2305 | 3387 | 0.394899 | CCTCCTGATGGCACCCTTTC | 60.395 | 60.000 | 0.00 | 0.0 | 0.00 | 2.62 | R |
2592 | 3675 | 1.048724 | CAATCTCCGCCCTAGACCCA | 61.049 | 60.000 | 0.00 | 0.0 | 0.00 | 4.51 | R |
2843 | 3999 | 2.158460 | GGCCTGGCCCAGTTATCTTATT | 60.158 | 50.000 | 27.77 | 0.0 | 44.06 | 1.40 | R |
3638 | 4801 | 0.105039 | CCTCTTATCACCTCCGTGGC | 59.895 | 60.000 | 0.00 | 0.0 | 40.65 | 5.01 | R |
3956 | 5119 | 0.031917 | TCTACACTATGGCCGGGGAA | 60.032 | 55.000 | 2.18 | 0.0 | 0.00 | 3.97 | R |
5349 | 8940 | 0.107654 | ACGTGCCAAGCCTTCCTATC | 60.108 | 55.000 | 0.00 | 0.0 | 0.00 | 2.08 | R |
5357 | 8948 | 0.382515 | TGTTAAACACGTGCCAAGCC | 59.617 | 50.000 | 17.22 | 0.0 | 0.00 | 4.35 | R |
5838 | 11602 | 1.202290 | CCAACGCATTGTAGGGCATTC | 60.202 | 52.381 | 0.00 | 0.0 | 33.60 | 2.67 | R |
6466 | 12406 | 0.108945 | GGCATCAAGAGGCTGCAAAC | 60.109 | 55.000 | 6.67 | 0.0 | 38.32 | 2.93 | R |
7064 | 13017 | 0.524862 | CTTCAGCCTGCAACACATCC | 59.475 | 55.000 | 0.00 | 0.0 | 0.00 | 3.51 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
182 | 187 | 4.470334 | AGTTGTTTTTCACATTGCCAGT | 57.530 | 36.364 | 0.00 | 0.00 | 34.43 | 4.00 |
240 | 245 | 8.830580 | CATACAGGAGTACAACATTTGGATAAG | 58.169 | 37.037 | 0.00 | 0.00 | 31.96 | 1.73 |
249 | 254 | 4.396357 | ACATTTGGATAAGTTGTGGGGA | 57.604 | 40.909 | 0.00 | 0.00 | 0.00 | 4.81 |
272 | 278 | 3.747099 | ATGTTCTTATCAACTGCGTGC | 57.253 | 42.857 | 0.00 | 0.00 | 0.00 | 5.34 |
293 | 299 | 6.303970 | CGTGCTCATTTTTGTTTCACTATGAG | 59.696 | 38.462 | 0.00 | 0.00 | 41.03 | 2.90 |
300 | 306 | 4.488126 | TTGTTTCACTATGAGCAAGTGC | 57.512 | 40.909 | 0.00 | 0.00 | 43.30 | 4.40 |
311 | 317 | 3.909662 | CAAGTGCTTGCGCCCTAT | 58.090 | 55.556 | 4.18 | 0.00 | 33.45 | 2.57 |
312 | 318 | 2.183409 | CAAGTGCTTGCGCCCTATT | 58.817 | 52.632 | 4.18 | 0.00 | 33.45 | 1.73 |
313 | 319 | 0.099436 | CAAGTGCTTGCGCCCTATTC | 59.901 | 55.000 | 4.18 | 0.00 | 33.45 | 1.75 |
314 | 320 | 0.322456 | AAGTGCTTGCGCCCTATTCA | 60.322 | 50.000 | 4.18 | 0.00 | 34.43 | 2.57 |
315 | 321 | 0.107017 | AGTGCTTGCGCCCTATTCAT | 60.107 | 50.000 | 4.18 | 0.00 | 34.43 | 2.57 |
316 | 322 | 1.140852 | AGTGCTTGCGCCCTATTCATA | 59.859 | 47.619 | 4.18 | 0.00 | 34.43 | 2.15 |
317 | 323 | 1.946768 | GTGCTTGCGCCCTATTCATAA | 59.053 | 47.619 | 4.18 | 0.00 | 34.43 | 1.90 |
318 | 324 | 2.031682 | GTGCTTGCGCCCTATTCATAAG | 60.032 | 50.000 | 4.18 | 0.00 | 34.43 | 1.73 |
319 | 325 | 2.222027 | GCTTGCGCCCTATTCATAAGT | 58.778 | 47.619 | 4.18 | 0.00 | 0.00 | 2.24 |
320 | 326 | 2.618709 | GCTTGCGCCCTATTCATAAGTT | 59.381 | 45.455 | 4.18 | 0.00 | 0.00 | 2.66 |
321 | 327 | 3.304057 | GCTTGCGCCCTATTCATAAGTTC | 60.304 | 47.826 | 4.18 | 0.00 | 0.00 | 3.01 |
322 | 328 | 3.838244 | TGCGCCCTATTCATAAGTTCT | 57.162 | 42.857 | 4.18 | 0.00 | 0.00 | 3.01 |
323 | 329 | 3.728845 | TGCGCCCTATTCATAAGTTCTC | 58.271 | 45.455 | 4.18 | 0.00 | 0.00 | 2.87 |
324 | 330 | 3.133901 | TGCGCCCTATTCATAAGTTCTCA | 59.866 | 43.478 | 4.18 | 0.00 | 0.00 | 3.27 |
325 | 331 | 4.127171 | GCGCCCTATTCATAAGTTCTCAA | 58.873 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
326 | 332 | 4.212214 | GCGCCCTATTCATAAGTTCTCAAG | 59.788 | 45.833 | 0.00 | 0.00 | 0.00 | 3.02 |
327 | 333 | 4.752101 | CGCCCTATTCATAAGTTCTCAAGG | 59.248 | 45.833 | 0.00 | 0.00 | 0.00 | 3.61 |
328 | 334 | 5.066593 | GCCCTATTCATAAGTTCTCAAGGG | 58.933 | 45.833 | 0.00 | 0.00 | 43.38 | 3.95 |
329 | 335 | 5.066593 | CCCTATTCATAAGTTCTCAAGGGC | 58.933 | 45.833 | 0.00 | 0.00 | 35.11 | 5.19 |
330 | 336 | 5.397899 | CCCTATTCATAAGTTCTCAAGGGCA | 60.398 | 44.000 | 0.00 | 0.00 | 35.11 | 5.36 |
331 | 337 | 5.529060 | CCTATTCATAAGTTCTCAAGGGCAC | 59.471 | 44.000 | 0.00 | 0.00 | 0.00 | 5.01 |
343 | 349 | 2.106332 | GGGCACCGAGATACACCG | 59.894 | 66.667 | 0.00 | 0.00 | 40.86 | 4.94 |
344 | 350 | 2.718073 | GGGCACCGAGATACACCGT | 61.718 | 63.158 | 0.00 | 0.00 | 40.86 | 4.83 |
345 | 351 | 1.386525 | GGGCACCGAGATACACCGTA | 61.387 | 60.000 | 0.00 | 0.00 | 40.86 | 4.02 |
346 | 352 | 0.248784 | GGCACCGAGATACACCGTAC | 60.249 | 60.000 | 0.00 | 0.00 | 0.00 | 3.67 |
347 | 353 | 0.452987 | GCACCGAGATACACCGTACA | 59.547 | 55.000 | 0.00 | 0.00 | 0.00 | 2.90 |
348 | 354 | 1.796617 | GCACCGAGATACACCGTACAC | 60.797 | 57.143 | 0.00 | 0.00 | 0.00 | 2.90 |
349 | 355 | 0.729116 | ACCGAGATACACCGTACACG | 59.271 | 55.000 | 0.00 | 0.00 | 39.44 | 4.49 |
350 | 356 | 1.009078 | CCGAGATACACCGTACACGA | 58.991 | 55.000 | 2.76 | 0.00 | 43.02 | 4.35 |
351 | 357 | 1.004185 | CCGAGATACACCGTACACGAG | 60.004 | 57.143 | 2.76 | 0.00 | 43.02 | 4.18 |
352 | 358 | 1.662629 | CGAGATACACCGTACACGAGT | 59.337 | 52.381 | 2.76 | 4.39 | 43.02 | 4.18 |
353 | 359 | 2.536329 | CGAGATACACCGTACACGAGTG | 60.536 | 54.545 | 16.54 | 16.54 | 43.02 | 3.51 |
354 | 360 | 1.741706 | AGATACACCGTACACGAGTGG | 59.258 | 52.381 | 19.95 | 0.00 | 41.46 | 4.00 |
355 | 361 | 1.739466 | GATACACCGTACACGAGTGGA | 59.261 | 52.381 | 19.95 | 15.25 | 41.46 | 4.02 |
364 | 370 | 1.509787 | CACGAGTGGATTTTGCGCG | 60.510 | 57.895 | 0.00 | 0.00 | 0.00 | 6.86 |
410 | 478 | 2.979151 | CGACGAACGTACCATACACAAA | 59.021 | 45.455 | 0.00 | 0.00 | 37.22 | 2.83 |
415 | 483 | 4.209703 | CGAACGTACCATACACAAAGTGTT | 59.790 | 41.667 | 8.20 | 0.00 | 45.08 | 3.32 |
434 | 502 | 3.517901 | TGTTCGTTCCATCATACTCCCTT | 59.482 | 43.478 | 0.00 | 0.00 | 0.00 | 3.95 |
435 | 503 | 3.819564 | TCGTTCCATCATACTCCCTTG | 57.180 | 47.619 | 0.00 | 0.00 | 0.00 | 3.61 |
447 | 515 | 8.748412 | CATCATACTCCCTTGGTTTCAAATTTA | 58.252 | 33.333 | 0.00 | 0.00 | 31.77 | 1.40 |
473 | 541 | 7.556733 | ACTAAAACCACGACAAGTATTTTGA | 57.443 | 32.000 | 0.00 | 0.00 | 34.30 | 2.69 |
482 | 550 | 4.378046 | CGACAAGTATTTTGAAACGGAGGG | 60.378 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
486 | 554 | 4.576879 | AGTATTTTGAAACGGAGGGAGTC | 58.423 | 43.478 | 0.00 | 0.00 | 0.00 | 3.36 |
487 | 555 | 1.873698 | TTTTGAAACGGAGGGAGTCG | 58.126 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
488 | 556 | 0.601841 | TTTGAAACGGAGGGAGTCGC | 60.602 | 55.000 | 0.00 | 0.00 | 0.00 | 5.19 |
489 | 557 | 2.125633 | GAAACGGAGGGAGTCGCC | 60.126 | 66.667 | 3.13 | 0.00 | 0.00 | 5.54 |
562 | 736 | 8.324191 | ACAAGATCTTTATATCCCTTGTCTGA | 57.676 | 34.615 | 4.86 | 0.00 | 39.72 | 3.27 |
565 | 739 | 8.733092 | AGATCTTTATATCCCTTGTCTGATCA | 57.267 | 34.615 | 0.00 | 0.00 | 31.85 | 2.92 |
566 | 740 | 9.163894 | AGATCTTTATATCCCTTGTCTGATCAA | 57.836 | 33.333 | 0.00 | 0.00 | 31.85 | 2.57 |
570 | 744 | 8.696043 | TTTATATCCCTTGTCTGATCAAATGG | 57.304 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
571 | 745 | 4.598036 | ATCCCTTGTCTGATCAAATGGT | 57.402 | 40.909 | 0.00 | 0.00 | 0.00 | 3.55 |
575 | 749 | 4.768968 | CCCTTGTCTGATCAAATGGTTCTT | 59.231 | 41.667 | 0.00 | 0.00 | 0.00 | 2.52 |
576 | 750 | 5.105997 | CCCTTGTCTGATCAAATGGTTCTTC | 60.106 | 44.000 | 0.00 | 0.00 | 0.00 | 2.87 |
577 | 751 | 5.391310 | CCTTGTCTGATCAAATGGTTCTTCG | 60.391 | 44.000 | 0.00 | 0.00 | 0.00 | 3.79 |
579 | 753 | 5.789521 | TGTCTGATCAAATGGTTCTTCGTA | 58.210 | 37.500 | 0.00 | 0.00 | 0.00 | 3.43 |
580 | 754 | 5.869344 | TGTCTGATCAAATGGTTCTTCGTAG | 59.131 | 40.000 | 0.00 | 0.00 | 0.00 | 3.51 |
585 | 774 | 6.485313 | TGATCAAATGGTTCTTCGTAGTTTGT | 59.515 | 34.615 | 0.00 | 0.00 | 0.00 | 2.83 |
591 | 780 | 6.092955 | TGGTTCTTCGTAGTTTGTAGTGAT | 57.907 | 37.500 | 0.00 | 0.00 | 0.00 | 3.06 |
604 | 793 | 8.918202 | AGTTTGTAGTGATTTAGAAATGGTCA | 57.082 | 30.769 | 0.00 | 0.00 | 0.00 | 4.02 |
616 | 805 | 8.519799 | TTTAGAAATGGTCATCTGGGAAATAC | 57.480 | 34.615 | 0.00 | 0.00 | 0.00 | 1.89 |
642 | 832 | 9.566624 | CTAATATTTTTGTTTTCAAGCGTGTTG | 57.433 | 29.630 | 0.00 | 0.00 | 41.09 | 3.33 |
643 | 833 | 4.653806 | TTTTTGTTTTCAAGCGTGTTGG | 57.346 | 36.364 | 0.00 | 0.00 | 41.09 | 3.77 |
680 | 902 | 3.721087 | ACGGAATGGAGAAGACCAAAT | 57.279 | 42.857 | 0.00 | 0.00 | 43.47 | 2.32 |
715 | 937 | 6.663093 | TGATGGTTTGTAATTAAGCTGGTGAT | 59.337 | 34.615 | 0.00 | 0.00 | 0.00 | 3.06 |
716 | 938 | 6.266168 | TGGTTTGTAATTAAGCTGGTGATG | 57.734 | 37.500 | 0.00 | 0.00 | 0.00 | 3.07 |
717 | 939 | 6.007076 | TGGTTTGTAATTAAGCTGGTGATGA | 58.993 | 36.000 | 0.00 | 0.00 | 0.00 | 2.92 |
722 | 944 | 6.341316 | TGTAATTAAGCTGGTGATGACTCTC | 58.659 | 40.000 | 0.00 | 0.00 | 0.00 | 3.20 |
752 | 1034 | 8.693625 | TCATGTATGCAAAATTCCATCATACAA | 58.306 | 29.630 | 18.22 | 7.80 | 46.81 | 2.41 |
871 | 1890 | 0.178891 | AGGGAGAAGGAAGAGGCACA | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 4.57 |
873 | 1892 | 0.390472 | GGAGAAGGAAGAGGCACACG | 60.390 | 60.000 | 0.00 | 0.00 | 0.00 | 4.49 |
874 | 1893 | 1.004440 | AGAAGGAAGAGGCACACGC | 60.004 | 57.895 | 0.00 | 0.00 | 37.44 | 5.34 |
905 | 1924 | 2.290323 | CCTCCACAGAAGAAAATCCGGT | 60.290 | 50.000 | 0.00 | 0.00 | 0.00 | 5.28 |
978 | 2047 | 2.985456 | CCGCTTCTGGCTCCTCTT | 59.015 | 61.111 | 0.00 | 0.00 | 39.13 | 2.85 |
990 | 2059 | 1.843206 | GCTCCTCTTCCATTCTTCCCT | 59.157 | 52.381 | 0.00 | 0.00 | 0.00 | 4.20 |
1104 | 2174 | 3.292159 | GTGCGTGGGGGTTGGAAC | 61.292 | 66.667 | 0.00 | 0.00 | 0.00 | 3.62 |
1174 | 2244 | 2.435938 | GCGGAATCTGCAACCCGA | 60.436 | 61.111 | 9.52 | 0.00 | 44.29 | 5.14 |
1178 | 2248 | 0.608035 | GGAATCTGCAACCCGACCAA | 60.608 | 55.000 | 0.00 | 0.00 | 0.00 | 3.67 |
1247 | 2317 | 1.594034 | CCGTACGATGTGTAGCTCGAC | 60.594 | 57.143 | 18.76 | 0.00 | 38.24 | 4.20 |
1251 | 2321 | 1.810755 | ACGATGTGTAGCTCGACAAGA | 59.189 | 47.619 | 0.00 | 0.00 | 38.24 | 3.02 |
1266 | 2336 | 1.470098 | ACAAGAGATGGATTGCGCAAC | 59.530 | 47.619 | 27.64 | 18.56 | 0.00 | 4.17 |
1309 | 2379 | 1.408683 | GCCATTGGTGATGTAGCCTCA | 60.409 | 52.381 | 4.26 | 0.00 | 33.71 | 3.86 |
1330 | 2400 | 1.168407 | TCAGCCACAAAGCTCAGCAC | 61.168 | 55.000 | 0.00 | 0.00 | 42.61 | 4.40 |
1418 | 2489 | 2.614829 | AACTGTACCTCGTTTGCAGT | 57.385 | 45.000 | 0.00 | 0.00 | 41.51 | 4.40 |
1448 | 2519 | 5.550290 | AGGAAAATTGTTTGCACATTAGGG | 58.450 | 37.500 | 0.00 | 0.00 | 37.52 | 3.53 |
1470 | 2541 | 3.737972 | GCATGCCATACTTTTTAGGTGCC | 60.738 | 47.826 | 6.36 | 0.00 | 0.00 | 5.01 |
1509 | 2583 | 5.164954 | GTGTGCTTTTGTTCCAAGTTGTTA | 58.835 | 37.500 | 1.45 | 0.00 | 0.00 | 2.41 |
1537 | 2611 | 9.950680 | ATACAGTATTTTGTTGACAAGTTTCTG | 57.049 | 29.630 | 13.79 | 13.79 | 37.15 | 3.02 |
1581 | 2655 | 2.199291 | GCAGCCAGCAATATGTCAAC | 57.801 | 50.000 | 0.00 | 0.00 | 44.79 | 3.18 |
1648 | 2722 | 0.458197 | CTTGACGAGCCAGCTCTCTG | 60.458 | 60.000 | 17.06 | 4.95 | 40.69 | 3.35 |
1650 | 2724 | 1.311651 | TGACGAGCCAGCTCTCTGAG | 61.312 | 60.000 | 17.06 | 0.00 | 42.95 | 3.35 |
1673 | 2747 | 2.587956 | TCGTGAATTGACCGAAGTACG | 58.412 | 47.619 | 0.00 | 0.00 | 42.18 | 3.67 |
1681 | 2755 | 1.398041 | TGACCGAAGTACGTGATACCG | 59.602 | 52.381 | 0.00 | 0.00 | 40.78 | 4.02 |
1683 | 2757 | 0.593263 | CCGAAGTACGTGATACCGCC | 60.593 | 60.000 | 0.00 | 0.00 | 40.78 | 6.13 |
1755 | 2829 | 0.955428 | TGAATCGTCAGCTGGTTGGC | 60.955 | 55.000 | 15.13 | 0.21 | 0.00 | 4.52 |
1855 | 2929 | 2.838736 | ACGATGCCAATCTGGTGATAC | 58.161 | 47.619 | 0.00 | 0.00 | 40.46 | 2.24 |
1972 | 3054 | 6.040247 | TCAACTATGGTACTACTCATTTGCG | 58.960 | 40.000 | 0.00 | 0.00 | 0.00 | 4.85 |
1980 | 3062 | 4.928661 | ACTACTCATTTGCGTCATGTTC | 57.071 | 40.909 | 0.00 | 0.00 | 0.00 | 3.18 |
1982 | 3064 | 3.542712 | ACTCATTTGCGTCATGTTCAC | 57.457 | 42.857 | 0.00 | 0.00 | 0.00 | 3.18 |
1985 | 3067 | 4.036734 | ACTCATTTGCGTCATGTTCACTTT | 59.963 | 37.500 | 0.00 | 0.00 | 0.00 | 2.66 |
1995 | 3077 | 6.237808 | GCGTCATGTTCACTTTCATTTTTGTT | 60.238 | 34.615 | 0.00 | 0.00 | 0.00 | 2.83 |
1996 | 3078 | 7.112397 | CGTCATGTTCACTTTCATTTTTGTTG | 58.888 | 34.615 | 0.00 | 0.00 | 0.00 | 3.33 |
2009 | 3091 | 7.059448 | TCATTTTTGTTGTGCAGTTTTTCTC | 57.941 | 32.000 | 0.00 | 0.00 | 0.00 | 2.87 |
2108 | 3190 | 1.329906 | GATCTCAAGCCAAGCACATCG | 59.670 | 52.381 | 0.00 | 0.00 | 0.00 | 3.84 |
2231 | 3313 | 1.349688 | ACCCGAAGCATAGGTCAAACA | 59.650 | 47.619 | 0.00 | 0.00 | 0.00 | 2.83 |
2305 | 3387 | 1.531423 | ACTGTCAAGGCTGCAAGATG | 58.469 | 50.000 | 0.50 | 0.00 | 34.07 | 2.90 |
2338 | 3420 | 3.642141 | TCAGGAGGCCCATTAAATTTCC | 58.358 | 45.455 | 0.00 | 0.00 | 33.88 | 3.13 |
2428 | 3510 | 0.512952 | GCGCATGCTTCTTATACGGG | 59.487 | 55.000 | 17.13 | 0.00 | 38.39 | 5.28 |
2487 | 3570 | 7.229907 | TGTTCTCAATTTGGGTAAACTAGTTCC | 59.770 | 37.037 | 8.95 | 6.69 | 0.00 | 3.62 |
2508 | 3591 | 8.478877 | AGTTCCTGTAGATATTTGAAGTACTGG | 58.521 | 37.037 | 0.00 | 0.00 | 35.25 | 4.00 |
2538 | 3621 | 9.231297 | GTGTTCTGGTGGTTATATGCATATTAT | 57.769 | 33.333 | 23.71 | 5.08 | 0.00 | 1.28 |
2569 | 3652 | 3.876914 | TGGATATTGAACAACGCATCCTC | 59.123 | 43.478 | 17.47 | 3.05 | 34.34 | 3.71 |
2592 | 3675 | 6.559429 | TCTTGGTAGAAACTAGGGTTCTACT | 58.441 | 40.000 | 29.15 | 10.65 | 36.90 | 2.57 |
2915 | 4076 | 3.042682 | TCATAACATTTCTCCCCGCCTA | 58.957 | 45.455 | 0.00 | 0.00 | 0.00 | 3.93 |
3542 | 4705 | 3.900892 | CGGCTCCTGCGTATCGGT | 61.901 | 66.667 | 0.00 | 0.00 | 40.82 | 4.69 |
3543 | 4706 | 2.279517 | GGCTCCTGCGTATCGGTG | 60.280 | 66.667 | 0.00 | 0.00 | 40.82 | 4.94 |
3573 | 4736 | 4.135153 | GGAGGCAGAGCTCGCGAA | 62.135 | 66.667 | 11.33 | 0.00 | 0.00 | 4.70 |
3638 | 4801 | 4.710695 | TACCACGTCTGTGCGGCG | 62.711 | 66.667 | 0.51 | 0.51 | 45.04 | 6.46 |
3659 | 4822 | 2.116383 | ACGGAGGTGATAAGAGGCG | 58.884 | 57.895 | 0.00 | 0.00 | 0.00 | 5.52 |
3683 | 4846 | 4.338539 | GTGCGGTCCGACACGAGT | 62.339 | 66.667 | 17.49 | 0.00 | 0.00 | 4.18 |
3684 | 4847 | 4.337060 | TGCGGTCCGACACGAGTG | 62.337 | 66.667 | 17.49 | 1.13 | 0.00 | 3.51 |
3695 | 4858 | 4.309950 | ACGAGTGTCCGTTGCCCC | 62.310 | 66.667 | 0.00 | 0.00 | 40.17 | 5.80 |
3724 | 4887 | 2.787249 | CTCGCATTGGTTGAGCCG | 59.213 | 61.111 | 0.00 | 0.00 | 41.21 | 5.52 |
3739 | 4902 | 2.933834 | CCGGTTGAGGGGGTCCTT | 60.934 | 66.667 | 0.00 | 0.00 | 45.05 | 3.36 |
3840 | 5003 | 3.458163 | TACGGGGCAGCGAAGAGG | 61.458 | 66.667 | 0.00 | 0.00 | 0.00 | 3.69 |
3853 | 5016 | 0.250081 | GAAGAGGATGATGCCGGGTC | 60.250 | 60.000 | 2.18 | 0.00 | 0.00 | 4.46 |
3882 | 5045 | 3.572222 | GGGGTCCCCCGTGAAACA | 61.572 | 66.667 | 17.45 | 0.00 | 46.66 | 2.83 |
3883 | 5046 | 2.516909 | GGGTCCCCCGTGAAACAA | 59.483 | 61.111 | 0.00 | 0.00 | 35.74 | 2.83 |
3894 | 5057 | 1.144276 | TGAAACAACGGTCCTGCGA | 59.856 | 52.632 | 0.00 | 0.00 | 0.00 | 5.10 |
3946 | 5109 | 4.778143 | GCCGTACTGCAGGGTGGG | 62.778 | 72.222 | 19.93 | 14.15 | 34.46 | 4.61 |
3947 | 5110 | 4.778143 | CCGTACTGCAGGGTGGGC | 62.778 | 72.222 | 19.93 | 0.25 | 0.00 | 5.36 |
3967 | 5130 | 4.733542 | CGGTTGTTCCCCGGCCAT | 62.734 | 66.667 | 2.24 | 0.00 | 41.78 | 4.40 |
3968 | 5131 | 2.678470 | GGTTGTTCCCCGGCCATA | 59.322 | 61.111 | 2.24 | 0.00 | 0.00 | 2.74 |
3969 | 5132 | 1.453197 | GGTTGTTCCCCGGCCATAG | 60.453 | 63.158 | 2.24 | 0.00 | 0.00 | 2.23 |
3970 | 5133 | 1.301954 | GTTGTTCCCCGGCCATAGT | 59.698 | 57.895 | 2.24 | 0.00 | 0.00 | 2.12 |
3971 | 5134 | 1.029947 | GTTGTTCCCCGGCCATAGTG | 61.030 | 60.000 | 2.24 | 0.00 | 0.00 | 2.74 |
3972 | 5135 | 1.493854 | TTGTTCCCCGGCCATAGTGT | 61.494 | 55.000 | 2.24 | 0.00 | 0.00 | 3.55 |
3973 | 5136 | 0.618107 | TGTTCCCCGGCCATAGTGTA | 60.618 | 55.000 | 2.24 | 0.00 | 0.00 | 2.90 |
3974 | 5137 | 0.106149 | GTTCCCCGGCCATAGTGTAG | 59.894 | 60.000 | 2.24 | 0.00 | 0.00 | 2.74 |
3975 | 5138 | 0.031917 | TTCCCCGGCCATAGTGTAGA | 60.032 | 55.000 | 2.24 | 0.00 | 0.00 | 2.59 |
3976 | 5139 | 0.757935 | TCCCCGGCCATAGTGTAGAC | 60.758 | 60.000 | 2.24 | 0.00 | 0.00 | 2.59 |
3977 | 5140 | 1.746517 | CCCGGCCATAGTGTAGACC | 59.253 | 63.158 | 2.24 | 0.00 | 0.00 | 3.85 |
3978 | 5141 | 1.362717 | CCGGCCATAGTGTAGACCG | 59.637 | 63.158 | 2.24 | 0.00 | 40.30 | 4.79 |
3979 | 5142 | 1.362717 | CGGCCATAGTGTAGACCGG | 59.637 | 63.158 | 2.24 | 0.00 | 37.04 | 5.28 |
3980 | 5143 | 1.389609 | CGGCCATAGTGTAGACCGGT | 61.390 | 60.000 | 6.92 | 6.92 | 37.04 | 5.28 |
3981 | 5144 | 0.828677 | GGCCATAGTGTAGACCGGTT | 59.171 | 55.000 | 9.42 | 0.87 | 0.00 | 4.44 |
3982 | 5145 | 1.472728 | GGCCATAGTGTAGACCGGTTG | 60.473 | 57.143 | 9.42 | 0.00 | 0.00 | 3.77 |
3983 | 5146 | 1.206371 | GCCATAGTGTAGACCGGTTGT | 59.794 | 52.381 | 9.42 | 1.19 | 0.00 | 3.32 |
3984 | 5147 | 2.888594 | CCATAGTGTAGACCGGTTGTG | 58.111 | 52.381 | 9.42 | 0.00 | 0.00 | 3.33 |
3985 | 5148 | 2.418197 | CCATAGTGTAGACCGGTTGTGG | 60.418 | 54.545 | 9.42 | 5.73 | 0.00 | 4.17 |
3986 | 5149 | 0.604578 | TAGTGTAGACCGGTTGTGGC | 59.395 | 55.000 | 9.42 | 0.00 | 0.00 | 5.01 |
3987 | 5150 | 2.025418 | GTGTAGACCGGTTGTGGCG | 61.025 | 63.158 | 9.42 | 0.00 | 0.00 | 5.69 |
3988 | 5151 | 2.341176 | GTAGACCGGTTGTGGCGT | 59.659 | 61.111 | 9.42 | 0.00 | 0.00 | 5.68 |
3989 | 5152 | 1.735559 | GTAGACCGGTTGTGGCGTC | 60.736 | 63.158 | 9.42 | 0.00 | 0.00 | 5.19 |
3990 | 5153 | 3.271706 | TAGACCGGTTGTGGCGTCG | 62.272 | 63.158 | 9.42 | 0.00 | 0.00 | 5.12 |
3991 | 5154 | 4.651008 | GACCGGTTGTGGCGTCGA | 62.651 | 66.667 | 9.42 | 0.00 | 0.00 | 4.20 |
3992 | 5155 | 4.955774 | ACCGGTTGTGGCGTCGAC | 62.956 | 66.667 | 0.00 | 5.18 | 0.00 | 4.20 |
4031 | 5194 | 4.016706 | GGTGACGGTGAGGGTGGG | 62.017 | 72.222 | 0.00 | 0.00 | 0.00 | 4.61 |
4032 | 5195 | 2.920912 | GTGACGGTGAGGGTGGGA | 60.921 | 66.667 | 0.00 | 0.00 | 0.00 | 4.37 |
4033 | 5196 | 2.122769 | TGACGGTGAGGGTGGGAA | 60.123 | 61.111 | 0.00 | 0.00 | 0.00 | 3.97 |
4034 | 5197 | 2.346365 | GACGGTGAGGGTGGGAAC | 59.654 | 66.667 | 0.00 | 0.00 | 0.00 | 3.62 |
4047 | 5210 | 3.319198 | GGAACCGGACCTGCTGGA | 61.319 | 66.667 | 17.64 | 0.00 | 46.81 | 3.86 |
4048 | 5211 | 2.670148 | GGAACCGGACCTGCTGGAT | 61.670 | 63.158 | 17.64 | 0.21 | 46.81 | 3.41 |
4049 | 5212 | 1.153349 | GAACCGGACCTGCTGGATC | 60.153 | 63.158 | 17.64 | 9.78 | 46.81 | 3.36 |
4050 | 5213 | 2.907897 | GAACCGGACCTGCTGGATCG | 62.908 | 65.000 | 17.64 | 17.31 | 46.81 | 3.69 |
4051 | 5214 | 4.227134 | CCGGACCTGCTGGATCGG | 62.227 | 72.222 | 24.06 | 24.06 | 46.81 | 4.18 |
4052 | 5215 | 3.147595 | CGGACCTGCTGGATCGGA | 61.148 | 66.667 | 17.64 | 0.00 | 37.04 | 4.55 |
4053 | 5216 | 2.721167 | CGGACCTGCTGGATCGGAA | 61.721 | 63.158 | 17.64 | 0.00 | 37.04 | 4.30 |
4054 | 5217 | 1.153349 | GGACCTGCTGGATCGGAAC | 60.153 | 63.158 | 17.64 | 0.00 | 37.04 | 3.62 |
4055 | 5218 | 1.519455 | GACCTGCTGGATCGGAACG | 60.519 | 63.158 | 17.64 | 0.00 | 45.92 | 3.95 |
4056 | 5219 | 2.892425 | CCTGCTGGATCGGAACGC | 60.892 | 66.667 | 2.92 | 0.00 | 44.90 | 4.84 |
4159 | 5322 | 3.207669 | GGCGGGATGAAGCTGCAG | 61.208 | 66.667 | 10.11 | 10.11 | 0.00 | 4.41 |
4160 | 5323 | 3.885521 | GCGGGATGAAGCTGCAGC | 61.886 | 66.667 | 31.53 | 31.53 | 42.49 | 5.25 |
4180 | 5343 | 2.827190 | CTGCTGCATGTGGGCGAT | 60.827 | 61.111 | 1.31 | 0.00 | 36.28 | 4.58 |
4181 | 5344 | 3.120979 | CTGCTGCATGTGGGCGATG | 62.121 | 63.158 | 1.31 | 0.00 | 36.28 | 3.84 |
4182 | 5345 | 3.896133 | GCTGCATGTGGGCGATGG | 61.896 | 66.667 | 0.00 | 0.00 | 36.28 | 3.51 |
4183 | 5346 | 3.214123 | CTGCATGTGGGCGATGGG | 61.214 | 66.667 | 0.00 | 0.00 | 36.28 | 4.00 |
4221 | 5384 | 2.278596 | CCGTCGATGGCCACTACG | 60.279 | 66.667 | 22.83 | 22.83 | 0.00 | 3.51 |
4222 | 5385 | 2.278596 | CGTCGATGGCCACTACGG | 60.279 | 66.667 | 22.31 | 8.79 | 38.11 | 4.02 |
4231 | 5394 | 2.505982 | CCACTACGGCCAGATGGG | 59.494 | 66.667 | 2.24 | 0.00 | 40.85 | 4.00 |
4232 | 5395 | 2.505982 | CACTACGGCCAGATGGGG | 59.494 | 66.667 | 2.24 | 0.00 | 37.04 | 4.96 |
4233 | 5396 | 2.768344 | ACTACGGCCAGATGGGGG | 60.768 | 66.667 | 2.24 | 0.00 | 37.04 | 5.40 |
4234 | 5397 | 2.768344 | CTACGGCCAGATGGGGGT | 60.768 | 66.667 | 2.24 | 0.00 | 37.04 | 4.95 |
4235 | 5398 | 3.087253 | TACGGCCAGATGGGGGTG | 61.087 | 66.667 | 2.24 | 0.00 | 37.04 | 4.61 |
4238 | 5401 | 4.447342 | GGCCAGATGGGGGTGGTG | 62.447 | 72.222 | 0.00 | 0.00 | 36.10 | 4.17 |
4239 | 5402 | 4.447342 | GCCAGATGGGGGTGGTGG | 62.447 | 72.222 | 0.12 | 0.00 | 36.10 | 4.61 |
4240 | 5403 | 4.447342 | CCAGATGGGGGTGGTGGC | 62.447 | 72.222 | 0.00 | 0.00 | 0.00 | 5.01 |
4241 | 5404 | 4.802051 | CAGATGGGGGTGGTGGCG | 62.802 | 72.222 | 0.00 | 0.00 | 0.00 | 5.69 |
4292 | 5455 | 2.124695 | GGGGGCGTCATGAGAACC | 60.125 | 66.667 | 0.00 | 0.00 | 0.00 | 3.62 |
4293 | 5456 | 2.511600 | GGGGCGTCATGAGAACCG | 60.512 | 66.667 | 0.00 | 0.00 | 0.00 | 4.44 |
4294 | 5457 | 2.511600 | GGGCGTCATGAGAACCGG | 60.512 | 66.667 | 0.00 | 0.00 | 0.00 | 5.28 |
4295 | 5458 | 3.195698 | GGCGTCATGAGAACCGGC | 61.196 | 66.667 | 12.96 | 12.96 | 38.68 | 6.13 |
4296 | 5459 | 3.554692 | GCGTCATGAGAACCGGCG | 61.555 | 66.667 | 0.00 | 0.00 | 0.00 | 6.46 |
4297 | 5460 | 2.180769 | CGTCATGAGAACCGGCGA | 59.819 | 61.111 | 9.30 | 0.00 | 0.00 | 5.54 |
4298 | 5461 | 2.158959 | CGTCATGAGAACCGGCGAC | 61.159 | 63.158 | 9.30 | 0.00 | 0.00 | 5.19 |
4379 | 5542 | 4.814294 | CGAGTACCACGGCAGGGC | 62.814 | 72.222 | 2.71 | 0.00 | 0.00 | 5.19 |
4446 | 5609 | 0.105039 | CAAGTACAGCCGGATCTCCC | 59.895 | 60.000 | 5.05 | 0.00 | 0.00 | 4.30 |
4464 | 5627 | 4.436998 | GGACCGCTGTGACGAGGG | 62.437 | 72.222 | 0.00 | 0.00 | 34.06 | 4.30 |
4483 | 5646 | 3.703127 | GTGGAGGACCCCGGTGAC | 61.703 | 72.222 | 0.00 | 0.00 | 34.81 | 3.67 |
4490 | 5653 | 3.602030 | ACCCCGGTGACCTCCTCT | 61.602 | 66.667 | 0.00 | 0.00 | 0.00 | 3.69 |
4501 | 5664 | 1.019650 | ACCTCCTCTGGGGTGTAGAT | 58.980 | 55.000 | 0.00 | 0.00 | 34.16 | 1.98 |
4588 | 5751 | 3.077556 | CTCGGGTGGGGAGGACAG | 61.078 | 72.222 | 0.00 | 0.00 | 0.00 | 3.51 |
4607 | 5770 | 4.083862 | GGCGTGGTGGAGAGGGTC | 62.084 | 72.222 | 0.00 | 0.00 | 0.00 | 4.46 |
4608 | 5771 | 3.311110 | GCGTGGTGGAGAGGGTCA | 61.311 | 66.667 | 0.00 | 0.00 | 0.00 | 4.02 |
4609 | 5772 | 2.973899 | CGTGGTGGAGAGGGTCAG | 59.026 | 66.667 | 0.00 | 0.00 | 0.00 | 3.51 |
4610 | 5773 | 2.665603 | GTGGTGGAGAGGGTCAGC | 59.334 | 66.667 | 0.00 | 0.00 | 0.00 | 4.26 |
4611 | 5774 | 2.997315 | TGGTGGAGAGGGTCAGCG | 60.997 | 66.667 | 0.00 | 0.00 | 34.49 | 5.18 |
4612 | 5775 | 3.775654 | GGTGGAGAGGGTCAGCGG | 61.776 | 72.222 | 0.00 | 0.00 | 0.00 | 5.52 |
4613 | 5776 | 4.459089 | GTGGAGAGGGTCAGCGGC | 62.459 | 72.222 | 0.00 | 0.00 | 0.00 | 6.53 |
4616 | 5779 | 4.803426 | GAGAGGGTCAGCGGCGTG | 62.803 | 72.222 | 9.37 | 5.92 | 0.00 | 5.34 |
4627 | 5790 | 3.461773 | CGGCGTGGTGGAGAGGAT | 61.462 | 66.667 | 0.00 | 0.00 | 0.00 | 3.24 |
4628 | 5791 | 2.990479 | GGCGTGGTGGAGAGGATT | 59.010 | 61.111 | 0.00 | 0.00 | 0.00 | 3.01 |
4629 | 5792 | 1.450312 | GGCGTGGTGGAGAGGATTG | 60.450 | 63.158 | 0.00 | 0.00 | 0.00 | 2.67 |
4685 | 5848 | 3.264845 | GATGGGGTGGGTGGTGGT | 61.265 | 66.667 | 0.00 | 0.00 | 0.00 | 4.16 |
4696 | 5859 | 0.322816 | GGTGGTGGTGCAGACATGAT | 60.323 | 55.000 | 0.00 | 0.00 | 0.00 | 2.45 |
4703 | 5866 | 1.406069 | GGTGCAGACATGATCGGAACT | 60.406 | 52.381 | 0.00 | 0.00 | 31.87 | 3.01 |
4706 | 5869 | 2.200067 | GCAGACATGATCGGAACTGAG | 58.800 | 52.381 | 0.00 | 0.00 | 0.00 | 3.35 |
4710 | 5873 | 3.894427 | AGACATGATCGGAACTGAGCTAT | 59.106 | 43.478 | 0.00 | 0.00 | 0.00 | 2.97 |
4718 | 5881 | 4.720046 | TCGGAACTGAGCTATCTGATACT | 58.280 | 43.478 | 0.00 | 0.00 | 0.00 | 2.12 |
4719 | 5882 | 4.757657 | TCGGAACTGAGCTATCTGATACTC | 59.242 | 45.833 | 14.81 | 14.81 | 0.00 | 2.59 |
4720 | 5883 | 4.083003 | CGGAACTGAGCTATCTGATACTCC | 60.083 | 50.000 | 17.10 | 7.78 | 0.00 | 3.85 |
4721 | 5884 | 4.219725 | GGAACTGAGCTATCTGATACTCCC | 59.780 | 50.000 | 17.10 | 11.14 | 0.00 | 4.30 |
4723 | 5886 | 4.662278 | ACTGAGCTATCTGATACTCCCTC | 58.338 | 47.826 | 17.10 | 10.97 | 0.00 | 4.30 |
4724 | 5887 | 4.016444 | CTGAGCTATCTGATACTCCCTCC | 58.984 | 52.174 | 17.10 | 2.78 | 0.00 | 4.30 |
4727 | 5890 | 2.750712 | GCTATCTGATACTCCCTCCGTC | 59.249 | 54.545 | 0.00 | 0.00 | 0.00 | 4.79 |
4728 | 5891 | 2.296073 | ATCTGATACTCCCTCCGTCC | 57.704 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
4729 | 5892 | 0.179026 | TCTGATACTCCCTCCGTCCG | 60.179 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
4732 | 5895 | 1.341285 | TGATACTCCCTCCGTCCGAAA | 60.341 | 52.381 | 0.00 | 0.00 | 0.00 | 3.46 |
4733 | 5896 | 1.753073 | GATACTCCCTCCGTCCGAAAA | 59.247 | 52.381 | 0.00 | 0.00 | 0.00 | 2.29 |
4736 | 5899 | 0.320697 | CTCCCTCCGTCCGAAAAAGT | 59.679 | 55.000 | 0.00 | 0.00 | 0.00 | 2.66 |
4737 | 5900 | 0.760572 | TCCCTCCGTCCGAAAAAGTT | 59.239 | 50.000 | 0.00 | 0.00 | 0.00 | 2.66 |
4739 | 5902 | 1.265905 | CCCTCCGTCCGAAAAAGTTTG | 59.734 | 52.381 | 0.00 | 0.00 | 0.00 | 2.93 |
4740 | 5903 | 1.944709 | CCTCCGTCCGAAAAAGTTTGT | 59.055 | 47.619 | 0.00 | 0.00 | 0.00 | 2.83 |
4741 | 5904 | 2.032290 | CCTCCGTCCGAAAAAGTTTGTC | 60.032 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
4742 | 5905 | 1.941975 | TCCGTCCGAAAAAGTTTGTCC | 59.058 | 47.619 | 0.00 | 0.00 | 0.00 | 4.02 |
4743 | 5906 | 1.944709 | CCGTCCGAAAAAGTTTGTCCT | 59.055 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
4744 | 5907 | 2.356695 | CCGTCCGAAAAAGTTTGTCCTT | 59.643 | 45.455 | 0.00 | 0.00 | 0.00 | 3.36 |
4745 | 5908 | 3.547413 | CCGTCCGAAAAAGTTTGTCCTTC | 60.547 | 47.826 | 0.00 | 0.00 | 0.00 | 3.46 |
4746 | 5909 | 3.064271 | CGTCCGAAAAAGTTTGTCCTTCA | 59.936 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
4747 | 5910 | 4.437659 | CGTCCGAAAAAGTTTGTCCTTCAA | 60.438 | 41.667 | 0.00 | 0.00 | 0.00 | 2.69 |
4748 | 5911 | 5.404096 | GTCCGAAAAAGTTTGTCCTTCAAA | 58.596 | 37.500 | 0.00 | 0.00 | 42.79 | 2.69 |
4749 | 5912 | 6.040247 | GTCCGAAAAAGTTTGTCCTTCAAAT | 58.960 | 36.000 | 0.00 | 0.00 | 45.88 | 2.32 |
4750 | 5913 | 6.019881 | GTCCGAAAAAGTTTGTCCTTCAAATG | 60.020 | 38.462 | 0.00 | 0.00 | 45.88 | 2.32 |
4752 | 5915 | 6.533367 | CCGAAAAAGTTTGTCCTTCAAATGAA | 59.467 | 34.615 | 0.00 | 0.00 | 45.88 | 2.57 |
4753 | 5916 | 7.224557 | CCGAAAAAGTTTGTCCTTCAAATGAAT | 59.775 | 33.333 | 0.00 | 0.00 | 45.88 | 2.57 |
4755 | 5918 | 8.791327 | AAAAAGTTTGTCCTTCAAATGAATGT | 57.209 | 26.923 | 0.00 | 0.00 | 45.88 | 2.71 |
4758 | 5921 | 9.696917 | AAAGTTTGTCCTTCAAATGAATGTATC | 57.303 | 29.630 | 0.00 | 0.00 | 45.88 | 2.24 |
4759 | 5922 | 8.641498 | AGTTTGTCCTTCAAATGAATGTATCT | 57.359 | 30.769 | 0.00 | 0.00 | 45.88 | 1.98 |
4762 | 5925 | 7.792374 | TGTCCTTCAAATGAATGTATCTAGC | 57.208 | 36.000 | 0.00 | 0.00 | 33.01 | 3.42 |
4763 | 5926 | 7.337938 | TGTCCTTCAAATGAATGTATCTAGCA | 58.662 | 34.615 | 0.00 | 0.00 | 33.01 | 3.49 |
4764 | 5927 | 7.280876 | TGTCCTTCAAATGAATGTATCTAGCAC | 59.719 | 37.037 | 0.00 | 0.00 | 33.01 | 4.40 |
4765 | 5928 | 7.497249 | GTCCTTCAAATGAATGTATCTAGCACT | 59.503 | 37.037 | 0.00 | 0.00 | 33.01 | 4.40 |
4767 | 5930 | 9.330063 | CCTTCAAATGAATGTATCTAGCACTAA | 57.670 | 33.333 | 0.00 | 0.00 | 33.01 | 2.24 |
4769 | 5932 | 9.890629 | TTCAAATGAATGTATCTAGCACTAAGT | 57.109 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
4770 | 5933 | 9.890629 | TCAAATGAATGTATCTAGCACTAAGTT | 57.109 | 29.630 | 0.00 | 0.00 | 0.00 | 2.66 |
4786 | 5949 | 6.712179 | ACTAAGTTAGTGCTAGGTACATCC | 57.288 | 41.667 | 14.82 | 0.00 | 37.69 | 3.51 |
4787 | 5950 | 6.192773 | ACTAAGTTAGTGCTAGGTACATCCA | 58.807 | 40.000 | 14.82 | 0.00 | 37.69 | 3.41 |
4788 | 5951 | 6.839657 | ACTAAGTTAGTGCTAGGTACATCCAT | 59.160 | 38.462 | 14.82 | 0.00 | 37.69 | 3.41 |
4789 | 5952 | 6.561519 | AAGTTAGTGCTAGGTACATCCATT | 57.438 | 37.500 | 0.00 | 0.00 | 39.02 | 3.16 |
4790 | 5953 | 6.561519 | AGTTAGTGCTAGGTACATCCATTT | 57.438 | 37.500 | 0.00 | 0.00 | 39.02 | 2.32 |
4791 | 5954 | 6.349300 | AGTTAGTGCTAGGTACATCCATTTG | 58.651 | 40.000 | 0.00 | 0.00 | 39.02 | 2.32 |
4792 | 5955 | 6.156256 | AGTTAGTGCTAGGTACATCCATTTGA | 59.844 | 38.462 | 0.00 | 0.00 | 39.02 | 2.69 |
4793 | 5956 | 5.028549 | AGTGCTAGGTACATCCATTTGAG | 57.971 | 43.478 | 0.00 | 0.00 | 39.02 | 3.02 |
4794 | 5957 | 4.130118 | GTGCTAGGTACATCCATTTGAGG | 58.870 | 47.826 | 0.00 | 0.00 | 39.02 | 3.86 |
4795 | 5958 | 4.037222 | TGCTAGGTACATCCATTTGAGGA | 58.963 | 43.478 | 0.00 | 0.00 | 43.01 | 3.71 |
4798 | 5961 | 2.846206 | AGGTACATCCATTTGAGGAGCA | 59.154 | 45.455 | 0.00 | 0.00 | 41.90 | 4.26 |
4799 | 5962 | 3.266772 | AGGTACATCCATTTGAGGAGCAA | 59.733 | 43.478 | 0.00 | 0.00 | 41.90 | 3.91 |
4803 | 5966 | 2.592102 | TCCATTTGAGGAGCAAGCTT | 57.408 | 45.000 | 0.00 | 0.00 | 37.87 | 3.74 |
4805 | 5968 | 1.203994 | CCATTTGAGGAGCAAGCTTGG | 59.796 | 52.381 | 27.10 | 9.80 | 37.87 | 3.61 |
4806 | 5969 | 1.203994 | CATTTGAGGAGCAAGCTTGGG | 59.796 | 52.381 | 27.10 | 3.84 | 37.87 | 4.12 |
4807 | 5970 | 0.478072 | TTTGAGGAGCAAGCTTGGGA | 59.522 | 50.000 | 27.10 | 0.00 | 37.87 | 4.37 |
4808 | 5971 | 0.250901 | TTGAGGAGCAAGCTTGGGAC | 60.251 | 55.000 | 27.10 | 11.27 | 31.55 | 4.46 |
4809 | 5972 | 1.376466 | GAGGAGCAAGCTTGGGACA | 59.624 | 57.895 | 27.10 | 0.00 | 0.00 | 4.02 |
4810 | 5973 | 4.411584 | TTGAGGAGCAAGCTTGGGACAA | 62.412 | 50.000 | 27.10 | 0.00 | 36.11 | 3.18 |
4820 | 5983 | 4.492604 | TGGGACAAGCTTTTCCGG | 57.507 | 55.556 | 22.30 | 0.00 | 31.92 | 5.14 |
4821 | 5984 | 1.840598 | TGGGACAAGCTTTTCCGGA | 59.159 | 52.632 | 22.30 | 10.91 | 31.92 | 5.14 |
4822 | 5985 | 0.536460 | TGGGACAAGCTTTTCCGGAC | 60.536 | 55.000 | 22.30 | 11.43 | 31.92 | 4.79 |
4823 | 5986 | 1.574702 | GGGACAAGCTTTTCCGGACG | 61.575 | 60.000 | 22.30 | 0.00 | 32.00 | 4.79 |
4825 | 5988 | 0.601841 | GACAAGCTTTTCCGGACGGA | 60.602 | 55.000 | 1.83 | 9.76 | 43.52 | 4.69 |
4829 | 5992 | 2.951101 | GCTTTTCCGGACGGAGGGA | 61.951 | 63.158 | 13.64 | 1.83 | 46.06 | 4.20 |
4831 | 5994 | 1.534717 | TTTTCCGGACGGAGGGAGT | 60.535 | 57.895 | 13.64 | 0.00 | 46.06 | 3.85 |
4832 | 5995 | 0.251742 | TTTTCCGGACGGAGGGAGTA | 60.252 | 55.000 | 13.64 | 0.00 | 46.06 | 2.59 |
4833 | 5996 | 0.967380 | TTTCCGGACGGAGGGAGTAC | 60.967 | 60.000 | 13.64 | 0.00 | 46.06 | 2.73 |
4834 | 5997 | 2.832201 | CCGGACGGAGGGAGTACC | 60.832 | 72.222 | 4.40 | 0.00 | 37.50 | 3.34 |
4860 | 8439 | 7.809880 | AATTGGTAGAAACTAGGGTTCTACT | 57.190 | 36.000 | 29.15 | 17.64 | 36.90 | 2.57 |
5182 | 8765 | 4.504461 | CGCTCATAACACCTCTCAACATAC | 59.496 | 45.833 | 0.00 | 0.00 | 0.00 | 2.39 |
5197 | 8780 | 9.318041 | CTCTCAACATACGAAACACTTATTTTG | 57.682 | 33.333 | 0.00 | 0.00 | 0.00 | 2.44 |
5260 | 8843 | 9.243637 | GTGTTTATTGCAGAACATTCAAGTAAA | 57.756 | 29.630 | 13.23 | 0.00 | 37.98 | 2.01 |
5339 | 8930 | 6.382859 | TGCTCTAGGTCACCATCTTACAAATA | 59.617 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
5341 | 8932 | 7.934120 | GCTCTAGGTCACCATCTTACAAATATT | 59.066 | 37.037 | 0.00 | 0.00 | 0.00 | 1.28 |
5342 | 8933 | 9.265901 | CTCTAGGTCACCATCTTACAAATATTG | 57.734 | 37.037 | 0.00 | 0.00 | 0.00 | 1.90 |
5344 | 8935 | 9.265901 | CTAGGTCACCATCTTACAAATATTGAG | 57.734 | 37.037 | 0.00 | 0.00 | 0.00 | 3.02 |
5346 | 8937 | 8.768397 | AGGTCACCATCTTACAAATATTGAGTA | 58.232 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
5347 | 8938 | 9.046296 | GGTCACCATCTTACAAATATTGAGTAG | 57.954 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
5348 | 8939 | 9.817809 | GTCACCATCTTACAAATATTGAGTAGA | 57.182 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
5359 | 8950 | 8.371699 | ACAAATATTGAGTAGAGATAGGAAGGC | 58.628 | 37.037 | 0.00 | 0.00 | 0.00 | 4.35 |
5362 | 8953 | 5.860941 | TTGAGTAGAGATAGGAAGGCTTG | 57.139 | 43.478 | 3.46 | 0.00 | 0.00 | 4.01 |
5363 | 8954 | 4.219115 | TGAGTAGAGATAGGAAGGCTTGG | 58.781 | 47.826 | 3.46 | 0.00 | 0.00 | 3.61 |
5364 | 8955 | 2.969262 | AGTAGAGATAGGAAGGCTTGGC | 59.031 | 50.000 | 3.46 | 0.00 | 0.00 | 4.52 |
5365 | 8956 | 1.885049 | AGAGATAGGAAGGCTTGGCA | 58.115 | 50.000 | 3.46 | 0.00 | 0.00 | 4.92 |
5366 | 8957 | 1.488393 | AGAGATAGGAAGGCTTGGCAC | 59.512 | 52.381 | 3.46 | 0.00 | 0.00 | 5.01 |
5367 | 8958 | 0.179000 | AGATAGGAAGGCTTGGCACG | 59.821 | 55.000 | 3.46 | 0.00 | 0.00 | 5.34 |
5368 | 8959 | 0.107654 | GATAGGAAGGCTTGGCACGT | 60.108 | 55.000 | 3.46 | 0.00 | 0.00 | 4.49 |
5369 | 8960 | 0.392998 | ATAGGAAGGCTTGGCACGTG | 60.393 | 55.000 | 12.28 | 12.28 | 0.00 | 4.49 |
5370 | 8961 | 1.764571 | TAGGAAGGCTTGGCACGTGT | 61.765 | 55.000 | 18.38 | 0.00 | 0.00 | 4.49 |
5371 | 8962 | 2.193536 | GGAAGGCTTGGCACGTGTT | 61.194 | 57.895 | 18.38 | 0.63 | 0.00 | 3.32 |
5374 | 8965 | 1.335496 | GAAGGCTTGGCACGTGTTTAA | 59.665 | 47.619 | 18.38 | 9.01 | 0.00 | 1.52 |
5375 | 8966 | 0.666374 | AGGCTTGGCACGTGTTTAAC | 59.334 | 50.000 | 18.38 | 4.48 | 0.00 | 2.01 |
5376 | 8967 | 0.382515 | GGCTTGGCACGTGTTTAACA | 59.617 | 50.000 | 18.38 | 6.20 | 0.00 | 2.41 |
5379 | 8970 | 2.478879 | GCTTGGCACGTGTTTAACAAGT | 60.479 | 45.455 | 24.82 | 10.63 | 41.34 | 3.16 |
5383 | 8974 | 3.688185 | TGGCACGTGTTTAACAAGTAACA | 59.312 | 39.130 | 18.38 | 13.90 | 38.71 | 2.41 |
5384 | 8975 | 4.155462 | TGGCACGTGTTTAACAAGTAACAA | 59.845 | 37.500 | 18.38 | 3.38 | 38.71 | 2.83 |
5386 | 8977 | 5.744819 | GGCACGTGTTTAACAAGTAACAAAT | 59.255 | 36.000 | 18.38 | 0.00 | 38.71 | 2.32 |
5387 | 8978 | 6.291374 | GGCACGTGTTTAACAAGTAACAAATG | 60.291 | 38.462 | 18.38 | 4.22 | 38.71 | 2.32 |
5388 | 8979 | 6.251801 | GCACGTGTTTAACAAGTAACAAATGT | 59.748 | 34.615 | 18.38 | 0.00 | 38.71 | 2.71 |
5389 | 8980 | 7.428761 | GCACGTGTTTAACAAGTAACAAATGTA | 59.571 | 33.333 | 18.38 | 0.00 | 38.71 | 2.29 |
5390 | 8981 | 8.726836 | CACGTGTTTAACAAGTAACAAATGTAC | 58.273 | 33.333 | 15.43 | 0.00 | 38.71 | 2.90 |
5391 | 8982 | 8.449397 | ACGTGTTTAACAAGTAACAAATGTACA | 58.551 | 29.630 | 14.41 | 0.00 | 38.97 | 2.90 |
5824 | 10456 | 9.277565 | CACACTGACTTTAAATATGCAATGTAC | 57.722 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
5838 | 11602 | 4.852138 | GCAATGTACATACTTGCATCTGG | 58.148 | 43.478 | 21.95 | 0.00 | 43.62 | 3.86 |
6004 | 11768 | 8.668510 | AGATATATGTGGTGTCATGAAAGTTC | 57.331 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
6261 | 12191 | 5.118664 | GGCTATTTCTTTTTGAAAACTCGGC | 59.881 | 40.000 | 0.00 | 0.00 | 46.32 | 5.54 |
6311 | 12241 | 5.419239 | AAGATTCTATCATCTAGCCCTGC | 57.581 | 43.478 | 0.00 | 0.00 | 32.84 | 4.85 |
6322 | 12252 | 6.233434 | TCATCTAGCCCTGCTTTATGTATTG | 58.767 | 40.000 | 0.00 | 0.00 | 40.44 | 1.90 |
6466 | 12406 | 2.549754 | CCCTAGCTGATTGCCGTATTTG | 59.450 | 50.000 | 0.00 | 0.00 | 44.23 | 2.32 |
6738 | 12678 | 5.659971 | TCCCTAACTCCTTGATACAAGTACC | 59.340 | 44.000 | 9.99 | 0.00 | 0.00 | 3.34 |
6760 | 12700 | 4.539083 | ACGCAGGACACGGTGCAA | 62.539 | 61.111 | 8.30 | 0.00 | 39.83 | 4.08 |
6762 | 12702 | 2.616330 | CGCAGGACACGGTGCAATT | 61.616 | 57.895 | 8.30 | 0.00 | 39.83 | 2.32 |
6772 | 12712 | 4.765273 | ACACGGTGCAATTGATATAGTCA | 58.235 | 39.130 | 10.34 | 0.00 | 34.25 | 3.41 |
6780 | 12720 | 7.255381 | GGTGCAATTGATATAGTCAGCAGAAAT | 60.255 | 37.037 | 10.34 | 0.00 | 36.55 | 2.17 |
6781 | 12721 | 7.590322 | GTGCAATTGATATAGTCAGCAGAAATG | 59.410 | 37.037 | 10.34 | 0.00 | 36.55 | 2.32 |
6782 | 12722 | 6.581542 | GCAATTGATATAGTCAGCAGAAATGC | 59.418 | 38.462 | 10.34 | 0.00 | 38.29 | 3.56 |
6783 | 12723 | 6.814506 | ATTGATATAGTCAGCAGAAATGCC | 57.185 | 37.500 | 0.00 | 0.00 | 38.29 | 4.40 |
6817 | 12759 | 5.674569 | GCAAGACTTATGCACATCATTTCGT | 60.675 | 40.000 | 0.00 | 0.00 | 43.29 | 3.85 |
6964 | 12911 | 1.634702 | GTAGAGGCAGTTGAAGAGCG | 58.365 | 55.000 | 0.00 | 0.00 | 0.00 | 5.03 |
7021 | 12968 | 4.032558 | GTCACTGCACGCTTATAACTAACC | 59.967 | 45.833 | 0.00 | 0.00 | 0.00 | 2.85 |
7032 | 12979 | 0.813184 | TAACTAACCGACGGGCAGAG | 59.187 | 55.000 | 20.00 | 11.48 | 36.48 | 3.35 |
7064 | 13017 | 5.344884 | GTCGTCCTGGAAGAAGAATAAGAG | 58.655 | 45.833 | 13.96 | 0.00 | 34.07 | 2.85 |
7066 | 13019 | 4.402793 | CGTCCTGGAAGAAGAATAAGAGGA | 59.597 | 45.833 | 3.30 | 0.00 | 34.07 | 3.71 |
7067 | 13020 | 5.069781 | CGTCCTGGAAGAAGAATAAGAGGAT | 59.930 | 44.000 | 3.30 | 0.00 | 34.07 | 3.24 |
7068 | 13021 | 6.287525 | GTCCTGGAAGAAGAATAAGAGGATG | 58.712 | 44.000 | 0.00 | 0.00 | 34.07 | 3.51 |
7071 | 13024 | 6.352565 | CCTGGAAGAAGAATAAGAGGATGTGT | 60.353 | 42.308 | 0.00 | 0.00 | 34.07 | 3.72 |
7076 | 13029 | 5.879223 | AGAAGAATAAGAGGATGTGTTGCAG | 59.121 | 40.000 | 0.00 | 0.00 | 0.00 | 4.41 |
7077 | 13030 | 4.521146 | AGAATAAGAGGATGTGTTGCAGG | 58.479 | 43.478 | 0.00 | 0.00 | 0.00 | 4.85 |
7078 | 13031 | 2.113860 | TAAGAGGATGTGTTGCAGGC | 57.886 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
7233 | 13297 | 4.034510 | GGATCTTGTATGACTTTCCAAGCG | 59.965 | 45.833 | 0.00 | 0.00 | 35.42 | 4.68 |
7242 | 13306 | 1.539827 | ACTTTCCAAGCGATTTTCCGG | 59.460 | 47.619 | 0.00 | 0.00 | 0.00 | 5.14 |
7249 | 13313 | 4.573201 | TCCAAGCGATTTTCCGGTATAAAG | 59.427 | 41.667 | 0.00 | 0.00 | 39.52 | 1.85 |
7292 | 13356 | 2.030893 | TGAAACTCTTGCATTTCGCCTG | 60.031 | 45.455 | 6.14 | 0.00 | 41.33 | 4.85 |
7313 | 13377 | 1.472480 | CCGGGCACTTTTCACCTAATG | 59.528 | 52.381 | 0.00 | 0.00 | 0.00 | 1.90 |
7326 | 13390 | 8.744568 | TTTTCACCTAATGCCAATTTTTCTTT | 57.255 | 26.923 | 0.00 | 0.00 | 0.00 | 2.52 |
7327 | 13391 | 8.744568 | TTTCACCTAATGCCAATTTTTCTTTT | 57.255 | 26.923 | 0.00 | 0.00 | 0.00 | 2.27 |
7328 | 13392 | 8.744568 | TTCACCTAATGCCAATTTTTCTTTTT | 57.255 | 26.923 | 0.00 | 0.00 | 0.00 | 1.94 |
7371 | 13509 | 3.701241 | TCGTTTCTTTGGTGCAATCAAC | 58.299 | 40.909 | 3.55 | 0.00 | 0.00 | 3.18 |
7451 | 13590 | 6.884832 | TGTTCTTATGTCATTAGAATCCCGT | 58.115 | 36.000 | 15.35 | 0.00 | 31.25 | 5.28 |
7466 | 13605 | 1.067142 | TCCCGTGAATCAAAGAGTCCG | 60.067 | 52.381 | 0.00 | 0.00 | 0.00 | 4.79 |
7468 | 13607 | 1.428448 | CGTGAATCAAAGAGTCCGCA | 58.572 | 50.000 | 0.00 | 0.00 | 0.00 | 5.69 |
7507 | 13646 | 0.108186 | TCAGATGGTCCACACGATGC | 60.108 | 55.000 | 0.00 | 0.00 | 0.00 | 3.91 |
7511 | 13650 | 0.391661 | ATGGTCCACACGATGCAGAC | 60.392 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
7526 | 13665 | 3.264947 | TGCAGACTCATCGAATCAAAGG | 58.735 | 45.455 | 0.00 | 0.00 | 0.00 | 3.11 |
7564 | 13703 | 0.664761 | ATTGTGATATGCGCAGTGGC | 59.335 | 50.000 | 18.32 | 5.78 | 38.43 | 5.01 |
7637 | 13776 | 1.670406 | CTGAGTGCTGCTTCGCCTT | 60.670 | 57.895 | 0.00 | 0.00 | 0.00 | 4.35 |
7638 | 13777 | 1.909141 | CTGAGTGCTGCTTCGCCTTG | 61.909 | 60.000 | 0.00 | 0.00 | 0.00 | 3.61 |
7639 | 13778 | 2.670934 | AGTGCTGCTTCGCCTTGG | 60.671 | 61.111 | 0.00 | 0.00 | 0.00 | 3.61 |
7640 | 13779 | 2.669569 | GTGCTGCTTCGCCTTGGA | 60.670 | 61.111 | 0.00 | 0.00 | 0.00 | 3.53 |
7641 | 13780 | 2.669569 | TGCTGCTTCGCCTTGGAC | 60.670 | 61.111 | 0.00 | 0.00 | 0.00 | 4.02 |
7642 | 13781 | 3.435186 | GCTGCTTCGCCTTGGACC | 61.435 | 66.667 | 0.00 | 0.00 | 0.00 | 4.46 |
7643 | 13782 | 3.121030 | CTGCTTCGCCTTGGACCG | 61.121 | 66.667 | 0.00 | 0.00 | 0.00 | 4.79 |
7678 | 13817 | 4.991056 | CGCTGTTATTCTACATACATGGCT | 59.009 | 41.667 | 0.00 | 0.00 | 0.00 | 4.75 |
7679 | 13818 | 5.107337 | CGCTGTTATTCTACATACATGGCTG | 60.107 | 44.000 | 0.00 | 0.00 | 0.00 | 4.85 |
7680 | 13819 | 5.991606 | GCTGTTATTCTACATACATGGCTGA | 59.008 | 40.000 | 0.00 | 0.00 | 0.00 | 4.26 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
240 | 245 | 6.339587 | TGATAAGAACATTTTCCCCACAAC | 57.660 | 37.500 | 0.00 | 0.00 | 31.28 | 3.32 |
249 | 254 | 4.917415 | GCACGCAGTTGATAAGAACATTTT | 59.083 | 37.500 | 0.00 | 0.00 | 41.61 | 1.82 |
272 | 278 | 7.864379 | ACTTGCTCATAGTGAAACAAAAATGAG | 59.136 | 33.333 | 5.90 | 5.90 | 41.19 | 2.90 |
300 | 306 | 4.130118 | AGAACTTATGAATAGGGCGCAAG | 58.870 | 43.478 | 10.83 | 2.95 | 43.44 | 4.01 |
301 | 307 | 4.127171 | GAGAACTTATGAATAGGGCGCAA | 58.873 | 43.478 | 10.83 | 0.00 | 0.00 | 4.85 |
302 | 308 | 3.133901 | TGAGAACTTATGAATAGGGCGCA | 59.866 | 43.478 | 10.83 | 0.00 | 0.00 | 6.09 |
303 | 309 | 3.728845 | TGAGAACTTATGAATAGGGCGC | 58.271 | 45.455 | 0.00 | 0.00 | 0.00 | 6.53 |
304 | 310 | 4.752101 | CCTTGAGAACTTATGAATAGGGCG | 59.248 | 45.833 | 0.00 | 0.00 | 0.00 | 6.13 |
305 | 311 | 5.066593 | CCCTTGAGAACTTATGAATAGGGC | 58.933 | 45.833 | 0.00 | 0.00 | 33.96 | 5.19 |
306 | 312 | 5.066593 | GCCCTTGAGAACTTATGAATAGGG | 58.933 | 45.833 | 0.00 | 0.00 | 42.17 | 3.53 |
307 | 313 | 5.529060 | GTGCCCTTGAGAACTTATGAATAGG | 59.471 | 44.000 | 0.00 | 0.00 | 0.00 | 2.57 |
308 | 314 | 5.529060 | GGTGCCCTTGAGAACTTATGAATAG | 59.471 | 44.000 | 0.00 | 0.00 | 0.00 | 1.73 |
309 | 315 | 5.437060 | GGTGCCCTTGAGAACTTATGAATA | 58.563 | 41.667 | 0.00 | 0.00 | 0.00 | 1.75 |
310 | 316 | 4.273318 | GGTGCCCTTGAGAACTTATGAAT | 58.727 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
311 | 317 | 3.686016 | GGTGCCCTTGAGAACTTATGAA | 58.314 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
312 | 318 | 2.354704 | CGGTGCCCTTGAGAACTTATGA | 60.355 | 50.000 | 0.00 | 0.00 | 0.00 | 2.15 |
313 | 319 | 2.009774 | CGGTGCCCTTGAGAACTTATG | 58.990 | 52.381 | 0.00 | 0.00 | 0.00 | 1.90 |
314 | 320 | 1.906574 | TCGGTGCCCTTGAGAACTTAT | 59.093 | 47.619 | 0.00 | 0.00 | 0.00 | 1.73 |
315 | 321 | 1.275291 | CTCGGTGCCCTTGAGAACTTA | 59.725 | 52.381 | 0.00 | 0.00 | 31.31 | 2.24 |
316 | 322 | 0.035458 | CTCGGTGCCCTTGAGAACTT | 59.965 | 55.000 | 0.00 | 0.00 | 31.31 | 2.66 |
317 | 323 | 0.832135 | TCTCGGTGCCCTTGAGAACT | 60.832 | 55.000 | 0.00 | 0.00 | 35.91 | 3.01 |
318 | 324 | 0.250513 | ATCTCGGTGCCCTTGAGAAC | 59.749 | 55.000 | 0.00 | 0.00 | 41.68 | 3.01 |
319 | 325 | 1.480954 | GTATCTCGGTGCCCTTGAGAA | 59.519 | 52.381 | 0.00 | 0.00 | 41.68 | 2.87 |
320 | 326 | 1.112113 | GTATCTCGGTGCCCTTGAGA | 58.888 | 55.000 | 0.00 | 0.00 | 42.47 | 3.27 |
321 | 327 | 0.824109 | TGTATCTCGGTGCCCTTGAG | 59.176 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
322 | 328 | 0.535335 | GTGTATCTCGGTGCCCTTGA | 59.465 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
323 | 329 | 0.462047 | GGTGTATCTCGGTGCCCTTG | 60.462 | 60.000 | 0.00 | 0.00 | 0.00 | 3.61 |
324 | 330 | 1.905512 | GGTGTATCTCGGTGCCCTT | 59.094 | 57.895 | 0.00 | 0.00 | 0.00 | 3.95 |
325 | 331 | 2.423898 | CGGTGTATCTCGGTGCCCT | 61.424 | 63.158 | 0.00 | 0.00 | 0.00 | 5.19 |
326 | 332 | 1.386525 | TACGGTGTATCTCGGTGCCC | 61.387 | 60.000 | 0.00 | 0.00 | 0.00 | 5.36 |
327 | 333 | 0.248784 | GTACGGTGTATCTCGGTGCC | 60.249 | 60.000 | 0.00 | 0.00 | 0.00 | 5.01 |
328 | 334 | 0.452987 | TGTACGGTGTATCTCGGTGC | 59.547 | 55.000 | 0.00 | 0.00 | 0.00 | 5.01 |
329 | 335 | 1.530441 | CGTGTACGGTGTATCTCGGTG | 60.530 | 57.143 | 0.00 | 0.00 | 35.37 | 4.94 |
330 | 336 | 0.729116 | CGTGTACGGTGTATCTCGGT | 59.271 | 55.000 | 0.00 | 0.00 | 35.37 | 4.69 |
331 | 337 | 1.004185 | CTCGTGTACGGTGTATCTCGG | 60.004 | 57.143 | 4.44 | 0.00 | 40.29 | 4.63 |
332 | 338 | 1.662629 | ACTCGTGTACGGTGTATCTCG | 59.337 | 52.381 | 4.44 | 0.00 | 40.29 | 4.04 |
333 | 339 | 2.223203 | CCACTCGTGTACGGTGTATCTC | 60.223 | 54.545 | 17.96 | 0.00 | 38.19 | 2.75 |
334 | 340 | 1.741706 | CCACTCGTGTACGGTGTATCT | 59.258 | 52.381 | 17.96 | 0.00 | 38.19 | 1.98 |
335 | 341 | 1.739466 | TCCACTCGTGTACGGTGTATC | 59.261 | 52.381 | 17.96 | 0.00 | 38.19 | 2.24 |
336 | 342 | 1.825090 | TCCACTCGTGTACGGTGTAT | 58.175 | 50.000 | 17.96 | 0.00 | 38.19 | 2.29 |
337 | 343 | 1.825090 | ATCCACTCGTGTACGGTGTA | 58.175 | 50.000 | 17.96 | 8.58 | 38.19 | 2.90 |
338 | 344 | 0.963962 | AATCCACTCGTGTACGGTGT | 59.036 | 50.000 | 17.96 | 10.12 | 38.19 | 4.16 |
339 | 345 | 2.074547 | AAATCCACTCGTGTACGGTG | 57.925 | 50.000 | 14.72 | 14.72 | 40.29 | 4.94 |
340 | 346 | 2.409975 | CAAAATCCACTCGTGTACGGT | 58.590 | 47.619 | 4.44 | 0.00 | 40.29 | 4.83 |
341 | 347 | 1.127951 | GCAAAATCCACTCGTGTACGG | 59.872 | 52.381 | 4.44 | 0.00 | 40.29 | 4.02 |
342 | 348 | 1.201769 | CGCAAAATCCACTCGTGTACG | 60.202 | 52.381 | 0.00 | 0.00 | 41.45 | 3.67 |
343 | 349 | 1.463528 | GCGCAAAATCCACTCGTGTAC | 60.464 | 52.381 | 0.30 | 0.00 | 0.00 | 2.90 |
344 | 350 | 0.793861 | GCGCAAAATCCACTCGTGTA | 59.206 | 50.000 | 0.30 | 0.00 | 0.00 | 2.90 |
345 | 351 | 1.574428 | GCGCAAAATCCACTCGTGT | 59.426 | 52.632 | 0.30 | 0.00 | 0.00 | 4.49 |
346 | 352 | 1.509787 | CGCGCAAAATCCACTCGTG | 60.510 | 57.895 | 8.75 | 0.00 | 0.00 | 4.35 |
347 | 353 | 2.860293 | CGCGCAAAATCCACTCGT | 59.140 | 55.556 | 8.75 | 0.00 | 0.00 | 4.18 |
348 | 354 | 1.692148 | TAGCGCGCAAAATCCACTCG | 61.692 | 55.000 | 35.10 | 0.00 | 0.00 | 4.18 |
349 | 355 | 0.657840 | ATAGCGCGCAAAATCCACTC | 59.342 | 50.000 | 35.10 | 0.00 | 0.00 | 3.51 |
350 | 356 | 1.064060 | GAATAGCGCGCAAAATCCACT | 59.936 | 47.619 | 35.10 | 11.76 | 0.00 | 4.00 |
351 | 357 | 1.202132 | TGAATAGCGCGCAAAATCCAC | 60.202 | 47.619 | 35.10 | 15.36 | 0.00 | 4.02 |
352 | 358 | 1.090728 | TGAATAGCGCGCAAAATCCA | 58.909 | 45.000 | 35.10 | 19.14 | 0.00 | 3.41 |
353 | 359 | 2.405892 | ATGAATAGCGCGCAAAATCC | 57.594 | 45.000 | 35.10 | 16.72 | 0.00 | 3.01 |
354 | 360 | 4.527564 | ACTTATGAATAGCGCGCAAAATC | 58.472 | 39.130 | 35.10 | 23.99 | 0.00 | 2.17 |
355 | 361 | 4.552166 | ACTTATGAATAGCGCGCAAAAT | 57.448 | 36.364 | 35.10 | 20.32 | 0.00 | 1.82 |
364 | 370 | 5.008118 | GTGCCCTTGAGAACTTATGAATAGC | 59.992 | 44.000 | 0.00 | 0.00 | 0.00 | 2.97 |
394 | 462 | 4.209703 | CGAACACTTTGTGTATGGTACGTT | 59.790 | 41.667 | 3.68 | 0.00 | 46.79 | 3.99 |
395 | 463 | 3.737266 | CGAACACTTTGTGTATGGTACGT | 59.263 | 43.478 | 3.68 | 0.00 | 46.79 | 3.57 |
396 | 464 | 3.737266 | ACGAACACTTTGTGTATGGTACG | 59.263 | 43.478 | 3.68 | 6.42 | 46.79 | 3.67 |
397 | 465 | 5.333568 | GGAACGAACACTTTGTGTATGGTAC | 60.334 | 44.000 | 3.68 | 0.00 | 46.79 | 3.34 |
410 | 478 | 3.118738 | GGGAGTATGATGGAACGAACACT | 60.119 | 47.826 | 0.00 | 0.00 | 0.00 | 3.55 |
415 | 483 | 2.434336 | CCAAGGGAGTATGATGGAACGA | 59.566 | 50.000 | 0.00 | 0.00 | 32.82 | 3.85 |
435 | 503 | 9.085250 | TCGTGGTTTTAGTTTAAATTTGAAACC | 57.915 | 29.630 | 22.02 | 22.02 | 42.85 | 3.27 |
447 | 515 | 8.460428 | TCAAAATACTTGTCGTGGTTTTAGTTT | 58.540 | 29.630 | 0.00 | 0.00 | 0.00 | 2.66 |
471 | 539 | 2.654877 | GCGACTCCCTCCGTTTCA | 59.345 | 61.111 | 0.00 | 0.00 | 0.00 | 2.69 |
482 | 550 | 1.400737 | ACCTACACTATGGGCGACTC | 58.599 | 55.000 | 0.00 | 0.00 | 29.87 | 3.36 |
486 | 554 | 5.699458 | CCTAATTTAACCTACACTATGGGCG | 59.301 | 44.000 | 0.00 | 0.00 | 29.87 | 6.13 |
487 | 555 | 6.834107 | TCCTAATTTAACCTACACTATGGGC | 58.166 | 40.000 | 0.00 | 0.00 | 29.87 | 5.36 |
488 | 556 | 8.269317 | TGTTCCTAATTTAACCTACACTATGGG | 58.731 | 37.037 | 0.00 | 0.00 | 34.27 | 4.00 |
489 | 557 | 9.847224 | ATGTTCCTAATTTAACCTACACTATGG | 57.153 | 33.333 | 0.00 | 0.00 | 0.00 | 2.74 |
559 | 733 | 6.727824 | AACTACGAAGAACCATTTGATCAG | 57.272 | 37.500 | 0.00 | 0.00 | 0.00 | 2.90 |
562 | 736 | 6.877611 | ACAAACTACGAAGAACCATTTGAT | 57.122 | 33.333 | 0.00 | 0.00 | 31.59 | 2.57 |
565 | 739 | 6.987992 | TCACTACAAACTACGAAGAACCATTT | 59.012 | 34.615 | 0.00 | 0.00 | 0.00 | 2.32 |
566 | 740 | 6.518493 | TCACTACAAACTACGAAGAACCATT | 58.482 | 36.000 | 0.00 | 0.00 | 0.00 | 3.16 |
570 | 744 | 9.403110 | TCTAAATCACTACAAACTACGAAGAAC | 57.597 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
571 | 745 | 9.970395 | TTCTAAATCACTACAAACTACGAAGAA | 57.030 | 29.630 | 0.00 | 0.00 | 0.00 | 2.52 |
575 | 749 | 9.146984 | CCATTTCTAAATCACTACAAACTACGA | 57.853 | 33.333 | 0.00 | 0.00 | 0.00 | 3.43 |
576 | 750 | 8.932791 | ACCATTTCTAAATCACTACAAACTACG | 58.067 | 33.333 | 0.00 | 0.00 | 0.00 | 3.51 |
579 | 753 | 8.918202 | TGACCATTTCTAAATCACTACAAACT | 57.082 | 30.769 | 0.00 | 0.00 | 0.00 | 2.66 |
580 | 754 | 9.774742 | GATGACCATTTCTAAATCACTACAAAC | 57.225 | 33.333 | 0.00 | 0.00 | 0.00 | 2.93 |
585 | 774 | 7.127186 | TCCCAGATGACCATTTCTAAATCACTA | 59.873 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
591 | 780 | 8.336235 | AGTATTTCCCAGATGACCATTTCTAAA | 58.664 | 33.333 | 0.00 | 0.00 | 0.00 | 1.85 |
616 | 805 | 9.566624 | CAACACGCTTGAAAACAAAAATATTAG | 57.433 | 29.630 | 0.00 | 0.00 | 0.00 | 1.73 |
642 | 832 | 2.412847 | CCGTTTTTCATCTCGTTGAGCC | 60.413 | 50.000 | 0.00 | 0.00 | 0.00 | 4.70 |
643 | 833 | 2.478894 | TCCGTTTTTCATCTCGTTGAGC | 59.521 | 45.455 | 0.00 | 0.00 | 0.00 | 4.26 |
715 | 937 | 5.603170 | TTGCATACATGATCAGAGAGTCA | 57.397 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
716 | 938 | 6.915544 | TTTTGCATACATGATCAGAGAGTC | 57.084 | 37.500 | 0.00 | 0.00 | 0.00 | 3.36 |
717 | 939 | 7.013083 | GGAATTTTGCATACATGATCAGAGAGT | 59.987 | 37.037 | 0.00 | 0.00 | 0.00 | 3.24 |
722 | 944 | 7.430441 | TGATGGAATTTTGCATACATGATCAG | 58.570 | 34.615 | 0.00 | 0.00 | 39.44 | 2.90 |
752 | 1034 | 4.471386 | ACAAACTAGTCCCTATGAGCATGT | 59.529 | 41.667 | 0.00 | 0.00 | 0.00 | 3.21 |
835 | 1119 | 1.710809 | CCCTTCCCCTTCTTTCTTCCA | 59.289 | 52.381 | 0.00 | 0.00 | 0.00 | 3.53 |
873 | 1892 | 4.554036 | GTGGAGGCGATCTGGGGC | 62.554 | 72.222 | 0.00 | 0.00 | 0.00 | 5.80 |
874 | 1893 | 3.083349 | TGTGGAGGCGATCTGGGG | 61.083 | 66.667 | 0.00 | 0.00 | 0.00 | 4.96 |
917 | 1936 | 4.673298 | TGTGGGTGCGTACGGCTG | 62.673 | 66.667 | 18.39 | 0.00 | 44.05 | 4.85 |
968 | 2037 | 1.561542 | GGAAGAATGGAAGAGGAGCCA | 59.438 | 52.381 | 0.00 | 0.00 | 38.78 | 4.75 |
978 | 2047 | 2.780010 | GGAGATGGAAGGGAAGAATGGA | 59.220 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
1104 | 2174 | 3.031417 | AAGGGTCCAGGCGAATCCG | 62.031 | 63.158 | 0.00 | 0.00 | 40.77 | 4.18 |
1247 | 2317 | 1.530441 | CGTTGCGCAATCCATCTCTTG | 60.530 | 52.381 | 27.79 | 2.68 | 0.00 | 3.02 |
1266 | 2336 | 3.197790 | CATGGAAGCGTGGGAGCG | 61.198 | 66.667 | 0.00 | 0.00 | 43.00 | 5.03 |
1309 | 2379 | 0.888285 | GCTGAGCTTTGTGGCTGAGT | 60.888 | 55.000 | 0.00 | 0.00 | 43.59 | 3.41 |
1330 | 2400 | 2.730404 | GAGATGACTGCTGCACATATCG | 59.270 | 50.000 | 10.72 | 0.00 | 0.00 | 2.92 |
1448 | 2519 | 3.447742 | GCACCTAAAAAGTATGGCATGC | 58.552 | 45.455 | 9.90 | 9.90 | 0.00 | 4.06 |
1470 | 2541 | 9.171701 | CAAAAGCACACCAAAATTCAAAATATG | 57.828 | 29.630 | 0.00 | 0.00 | 0.00 | 1.78 |
1532 | 2606 | 4.753516 | TGTTCAGAACAGGAGTCAGAAA | 57.246 | 40.909 | 12.24 | 0.00 | 36.25 | 2.52 |
1648 | 2722 | 1.640428 | TCGGTCAATTCACGATGCTC | 58.360 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
1650 | 2724 | 1.732259 | ACTTCGGTCAATTCACGATGC | 59.268 | 47.619 | 0.00 | 0.00 | 36.43 | 3.91 |
1659 | 2733 | 3.488047 | CGGTATCACGTACTTCGGTCAAT | 60.488 | 47.826 | 0.00 | 0.00 | 44.69 | 2.57 |
1673 | 2747 | 0.389426 | ACACAAGTCGGCGGTATCAC | 60.389 | 55.000 | 7.21 | 0.00 | 0.00 | 3.06 |
1681 | 2755 | 2.165319 | AGTCCTTTACACAAGTCGGC | 57.835 | 50.000 | 0.00 | 0.00 | 0.00 | 5.54 |
1683 | 2757 | 3.059597 | CAGCAAGTCCTTTACACAAGTCG | 60.060 | 47.826 | 0.00 | 0.00 | 0.00 | 4.18 |
1812 | 2886 | 5.920193 | AACCATCAAGGAATTGTACCATG | 57.080 | 39.130 | 0.00 | 0.00 | 41.22 | 3.66 |
1855 | 2929 | 1.160137 | CCACTCGGGAGCTTTTCAAG | 58.840 | 55.000 | 0.00 | 0.00 | 40.01 | 3.02 |
1972 | 3054 | 7.899330 | CACAACAAAAATGAAAGTGAACATGAC | 59.101 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
1980 | 3062 | 5.783100 | ACTGCACAACAAAAATGAAAGTG | 57.217 | 34.783 | 0.00 | 0.00 | 0.00 | 3.16 |
1982 | 3064 | 8.016801 | AGAAAAACTGCACAACAAAAATGAAAG | 58.983 | 29.630 | 0.00 | 0.00 | 0.00 | 2.62 |
1985 | 3067 | 6.183360 | CGAGAAAAACTGCACAACAAAAATGA | 60.183 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
1995 | 3077 | 3.791789 | GCAACATCGAGAAAAACTGCACA | 60.792 | 43.478 | 0.00 | 0.00 | 0.00 | 4.57 |
1996 | 3078 | 2.721090 | GCAACATCGAGAAAAACTGCAC | 59.279 | 45.455 | 0.00 | 0.00 | 0.00 | 4.57 |
2009 | 3091 | 3.243035 | TGTCTCCAAAAACAGCAACATCG | 60.243 | 43.478 | 0.00 | 0.00 | 0.00 | 3.84 |
2108 | 3190 | 8.808092 | AGCTCTATTACAAGGTTATAGTCCATC | 58.192 | 37.037 | 0.00 | 0.00 | 30.30 | 3.51 |
2261 | 3343 | 9.661187 | GTTTTGTAGTTAGTTTAGCTTCTTTCC | 57.339 | 33.333 | 0.00 | 0.00 | 0.00 | 3.13 |
2305 | 3387 | 0.394899 | CCTCCTGATGGCACCCTTTC | 60.395 | 60.000 | 0.00 | 0.00 | 0.00 | 2.62 |
2487 | 3570 | 8.470805 | ACTGTCCAGTACTTCAAATATCTACAG | 58.529 | 37.037 | 0.00 | 0.00 | 40.43 | 2.74 |
2502 | 3585 | 2.548067 | CCACCAGAACACTGTCCAGTAC | 60.548 | 54.545 | 0.00 | 0.00 | 40.20 | 2.73 |
2508 | 3591 | 4.332819 | GCATATAACCACCAGAACACTGTC | 59.667 | 45.833 | 0.00 | 0.00 | 0.00 | 3.51 |
2569 | 3652 | 6.351117 | CCAGTAGAACCCTAGTTTCTACCAAG | 60.351 | 46.154 | 24.63 | 18.50 | 37.34 | 3.61 |
2592 | 3675 | 1.048724 | CAATCTCCGCCCTAGACCCA | 61.049 | 60.000 | 0.00 | 0.00 | 0.00 | 4.51 |
2843 | 3999 | 2.158460 | GGCCTGGCCCAGTTATCTTATT | 60.158 | 50.000 | 27.77 | 0.00 | 44.06 | 1.40 |
2915 | 4076 | 0.597637 | CGAGGACGAGCTGTTTGTGT | 60.598 | 55.000 | 0.00 | 0.00 | 42.66 | 3.72 |
3324 | 4487 | 0.108089 | ACGGCCATGTATTACGCACA | 60.108 | 50.000 | 2.24 | 0.00 | 0.00 | 4.57 |
3542 | 4705 | 2.646175 | CCTCCTTCGCTTCGGACCA | 61.646 | 63.158 | 0.00 | 0.00 | 0.00 | 4.02 |
3543 | 4706 | 2.184579 | CCTCCTTCGCTTCGGACC | 59.815 | 66.667 | 0.00 | 0.00 | 0.00 | 4.46 |
3638 | 4801 | 0.105039 | CCTCTTATCACCTCCGTGGC | 59.895 | 60.000 | 0.00 | 0.00 | 40.65 | 5.01 |
3641 | 4804 | 0.395311 | TCGCCTCTTATCACCTCCGT | 60.395 | 55.000 | 0.00 | 0.00 | 0.00 | 4.69 |
3695 | 4858 | 1.021390 | AATGCGAGCAGTTCTTCCGG | 61.021 | 55.000 | 3.58 | 0.00 | 0.00 | 5.14 |
3724 | 4887 | 2.160853 | ACCAAGGACCCCCTCAACC | 61.161 | 63.158 | 0.00 | 0.00 | 43.48 | 3.77 |
3739 | 4902 | 3.687102 | CCACCTACGACGGCACCA | 61.687 | 66.667 | 0.00 | 0.00 | 0.00 | 4.17 |
3951 | 5114 | 1.453197 | CTATGGCCGGGGAACAACC | 60.453 | 63.158 | 2.18 | 0.00 | 38.08 | 3.77 |
3952 | 5115 | 1.029947 | CACTATGGCCGGGGAACAAC | 61.030 | 60.000 | 2.18 | 0.00 | 0.00 | 3.32 |
3953 | 5116 | 1.301623 | CACTATGGCCGGGGAACAA | 59.698 | 57.895 | 2.18 | 0.00 | 0.00 | 2.83 |
3954 | 5117 | 0.618107 | TACACTATGGCCGGGGAACA | 60.618 | 55.000 | 2.18 | 0.00 | 0.00 | 3.18 |
3955 | 5118 | 0.106149 | CTACACTATGGCCGGGGAAC | 59.894 | 60.000 | 2.18 | 0.00 | 0.00 | 3.62 |
3956 | 5119 | 0.031917 | TCTACACTATGGCCGGGGAA | 60.032 | 55.000 | 2.18 | 0.00 | 0.00 | 3.97 |
3957 | 5120 | 0.757935 | GTCTACACTATGGCCGGGGA | 60.758 | 60.000 | 2.18 | 0.00 | 0.00 | 4.81 |
3958 | 5121 | 1.746517 | GTCTACACTATGGCCGGGG | 59.253 | 63.158 | 2.18 | 0.00 | 0.00 | 5.73 |
3959 | 5122 | 1.746517 | GGTCTACACTATGGCCGGG | 59.253 | 63.158 | 2.18 | 0.00 | 0.00 | 5.73 |
3960 | 5123 | 1.362717 | CGGTCTACACTATGGCCGG | 59.637 | 63.158 | 0.00 | 0.00 | 36.05 | 6.13 |
3961 | 5124 | 1.362717 | CCGGTCTACACTATGGCCG | 59.637 | 63.158 | 0.00 | 0.00 | 38.99 | 6.13 |
3962 | 5125 | 0.828677 | AACCGGTCTACACTATGGCC | 59.171 | 55.000 | 8.04 | 0.00 | 0.00 | 5.36 |
3963 | 5126 | 1.206371 | ACAACCGGTCTACACTATGGC | 59.794 | 52.381 | 8.04 | 0.00 | 0.00 | 4.40 |
3964 | 5127 | 2.418197 | CCACAACCGGTCTACACTATGG | 60.418 | 54.545 | 8.04 | 0.00 | 0.00 | 2.74 |
3965 | 5128 | 2.888594 | CCACAACCGGTCTACACTATG | 58.111 | 52.381 | 8.04 | 1.48 | 0.00 | 2.23 |
3966 | 5129 | 1.206371 | GCCACAACCGGTCTACACTAT | 59.794 | 52.381 | 8.04 | 0.00 | 0.00 | 2.12 |
3967 | 5130 | 0.604578 | GCCACAACCGGTCTACACTA | 59.395 | 55.000 | 8.04 | 0.00 | 0.00 | 2.74 |
3968 | 5131 | 1.370064 | GCCACAACCGGTCTACACT | 59.630 | 57.895 | 8.04 | 0.00 | 0.00 | 3.55 |
3969 | 5132 | 2.025418 | CGCCACAACCGGTCTACAC | 61.025 | 63.158 | 8.04 | 0.00 | 0.00 | 2.90 |
3970 | 5133 | 2.340809 | CGCCACAACCGGTCTACA | 59.659 | 61.111 | 8.04 | 0.00 | 0.00 | 2.74 |
3971 | 5134 | 1.735559 | GACGCCACAACCGGTCTAC | 60.736 | 63.158 | 8.04 | 0.00 | 0.00 | 2.59 |
3972 | 5135 | 2.652530 | GACGCCACAACCGGTCTA | 59.347 | 61.111 | 8.04 | 0.00 | 0.00 | 2.59 |
3973 | 5136 | 4.657824 | CGACGCCACAACCGGTCT | 62.658 | 66.667 | 8.04 | 0.00 | 0.00 | 3.85 |
3974 | 5137 | 4.651008 | TCGACGCCACAACCGGTC | 62.651 | 66.667 | 8.04 | 0.00 | 0.00 | 4.79 |
3975 | 5138 | 4.955774 | GTCGACGCCACAACCGGT | 62.956 | 66.667 | 0.00 | 0.00 | 0.00 | 5.28 |
4007 | 5170 | 4.351938 | TCACCGTCACCGCTTCCG | 62.352 | 66.667 | 0.00 | 0.00 | 0.00 | 4.30 |
4008 | 5171 | 2.432628 | CTCACCGTCACCGCTTCC | 60.433 | 66.667 | 0.00 | 0.00 | 0.00 | 3.46 |
4009 | 5172 | 2.432628 | CCTCACCGTCACCGCTTC | 60.433 | 66.667 | 0.00 | 0.00 | 0.00 | 3.86 |
4010 | 5173 | 4.003788 | CCCTCACCGTCACCGCTT | 62.004 | 66.667 | 0.00 | 0.00 | 0.00 | 4.68 |
4013 | 5176 | 4.373116 | CCACCCTCACCGTCACCG | 62.373 | 72.222 | 0.00 | 0.00 | 0.00 | 4.94 |
4014 | 5177 | 4.016706 | CCCACCCTCACCGTCACC | 62.017 | 72.222 | 0.00 | 0.00 | 0.00 | 4.02 |
4015 | 5178 | 2.513259 | TTCCCACCCTCACCGTCAC | 61.513 | 63.158 | 0.00 | 0.00 | 0.00 | 3.67 |
4016 | 5179 | 2.122769 | TTCCCACCCTCACCGTCA | 60.123 | 61.111 | 0.00 | 0.00 | 0.00 | 4.35 |
4017 | 5180 | 2.346365 | GTTCCCACCCTCACCGTC | 59.654 | 66.667 | 0.00 | 0.00 | 0.00 | 4.79 |
4018 | 5181 | 3.246880 | GGTTCCCACCCTCACCGT | 61.247 | 66.667 | 0.00 | 0.00 | 37.03 | 4.83 |
4019 | 5182 | 4.388499 | CGGTTCCCACCCTCACCG | 62.388 | 72.222 | 0.00 | 0.00 | 45.75 | 4.94 |
4020 | 5183 | 4.029809 | CCGGTTCCCACCCTCACC | 62.030 | 72.222 | 0.00 | 0.00 | 40.52 | 4.02 |
4021 | 5184 | 2.926242 | TCCGGTTCCCACCCTCAC | 60.926 | 66.667 | 0.00 | 0.00 | 40.52 | 3.51 |
4022 | 5185 | 2.926242 | GTCCGGTTCCCACCCTCA | 60.926 | 66.667 | 0.00 | 0.00 | 40.52 | 3.86 |
4023 | 5186 | 3.714001 | GGTCCGGTTCCCACCCTC | 61.714 | 72.222 | 0.00 | 0.00 | 40.52 | 4.30 |
4024 | 5187 | 4.265507 | AGGTCCGGTTCCCACCCT | 62.266 | 66.667 | 0.00 | 0.00 | 40.52 | 4.34 |
4025 | 5188 | 4.029809 | CAGGTCCGGTTCCCACCC | 62.030 | 72.222 | 0.00 | 0.00 | 40.52 | 4.61 |
4026 | 5189 | 4.717313 | GCAGGTCCGGTTCCCACC | 62.717 | 72.222 | 0.00 | 0.05 | 40.16 | 4.61 |
4027 | 5190 | 3.637273 | AGCAGGTCCGGTTCCCAC | 61.637 | 66.667 | 0.00 | 0.99 | 0.00 | 4.61 |
4028 | 5191 | 3.636231 | CAGCAGGTCCGGTTCCCA | 61.636 | 66.667 | 0.00 | 0.00 | 0.00 | 4.37 |
4029 | 5192 | 4.410400 | CCAGCAGGTCCGGTTCCC | 62.410 | 72.222 | 0.00 | 0.00 | 0.00 | 3.97 |
4030 | 5193 | 2.595009 | GATCCAGCAGGTCCGGTTCC | 62.595 | 65.000 | 0.00 | 5.78 | 35.89 | 3.62 |
4031 | 5194 | 1.153349 | GATCCAGCAGGTCCGGTTC | 60.153 | 63.158 | 0.00 | 0.00 | 35.89 | 3.62 |
4032 | 5195 | 2.990479 | GATCCAGCAGGTCCGGTT | 59.010 | 61.111 | 0.00 | 0.00 | 35.89 | 4.44 |
4033 | 5196 | 3.461773 | CGATCCAGCAGGTCCGGT | 61.462 | 66.667 | 0.00 | 0.00 | 35.89 | 5.28 |
4034 | 5197 | 4.227134 | CCGATCCAGCAGGTCCGG | 62.227 | 72.222 | 14.02 | 14.02 | 41.58 | 5.14 |
4035 | 5198 | 2.721167 | TTCCGATCCAGCAGGTCCG | 61.721 | 63.158 | 0.00 | 0.05 | 35.89 | 4.79 |
4036 | 5199 | 1.153349 | GTTCCGATCCAGCAGGTCC | 60.153 | 63.158 | 0.00 | 0.00 | 35.89 | 4.46 |
4037 | 5200 | 1.519455 | CGTTCCGATCCAGCAGGTC | 60.519 | 63.158 | 0.00 | 0.00 | 35.89 | 3.85 |
4038 | 5201 | 2.579201 | CGTTCCGATCCAGCAGGT | 59.421 | 61.111 | 0.00 | 0.00 | 35.89 | 4.00 |
4039 | 5202 | 2.892425 | GCGTTCCGATCCAGCAGG | 60.892 | 66.667 | 0.00 | 0.00 | 0.00 | 4.85 |
4040 | 5203 | 2.892425 | GGCGTTCCGATCCAGCAG | 60.892 | 66.667 | 0.00 | 0.00 | 0.00 | 4.24 |
4041 | 5204 | 4.467084 | GGGCGTTCCGATCCAGCA | 62.467 | 66.667 | 0.00 | 0.00 | 0.00 | 4.41 |
4142 | 5305 | 3.207669 | CTGCAGCTTCATCCCGCC | 61.208 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
4143 | 5306 | 3.885521 | GCTGCAGCTTCATCCCGC | 61.886 | 66.667 | 31.33 | 0.78 | 38.21 | 6.13 |
4163 | 5326 | 2.827190 | ATCGCCCACATGCAGCAG | 60.827 | 61.111 | 0.00 | 0.00 | 0.00 | 4.24 |
4164 | 5327 | 3.135457 | CATCGCCCACATGCAGCA | 61.135 | 61.111 | 0.00 | 0.00 | 0.00 | 4.41 |
4165 | 5328 | 3.896133 | CCATCGCCCACATGCAGC | 61.896 | 66.667 | 0.00 | 0.00 | 0.00 | 5.25 |
4166 | 5329 | 3.214123 | CCCATCGCCCACATGCAG | 61.214 | 66.667 | 0.00 | 0.00 | 0.00 | 4.41 |
4204 | 5367 | 2.278596 | CGTAGTGGCCATCGACGG | 60.279 | 66.667 | 23.17 | 0.00 | 32.20 | 4.79 |
4205 | 5368 | 2.278596 | CCGTAGTGGCCATCGACG | 60.279 | 66.667 | 23.62 | 23.62 | 34.69 | 5.12 |
4214 | 5377 | 2.505982 | CCCATCTGGCCGTAGTGG | 59.494 | 66.667 | 0.00 | 3.62 | 42.50 | 4.00 |
4215 | 5378 | 2.505982 | CCCCATCTGGCCGTAGTG | 59.494 | 66.667 | 0.00 | 0.00 | 0.00 | 2.74 |
4216 | 5379 | 2.768344 | CCCCCATCTGGCCGTAGT | 60.768 | 66.667 | 0.00 | 0.00 | 0.00 | 2.73 |
4217 | 5380 | 2.768344 | ACCCCCATCTGGCCGTAG | 60.768 | 66.667 | 0.00 | 0.00 | 0.00 | 3.51 |
4218 | 5381 | 3.087253 | CACCCCCATCTGGCCGTA | 61.087 | 66.667 | 0.00 | 0.00 | 0.00 | 4.02 |
4221 | 5384 | 4.447342 | CACCACCCCCATCTGGCC | 62.447 | 72.222 | 0.00 | 0.00 | 0.00 | 5.36 |
4222 | 5385 | 4.447342 | CCACCACCCCCATCTGGC | 62.447 | 72.222 | 0.00 | 0.00 | 0.00 | 4.85 |
4223 | 5386 | 4.447342 | GCCACCACCCCCATCTGG | 62.447 | 72.222 | 0.00 | 0.00 | 0.00 | 3.86 |
4224 | 5387 | 4.802051 | CGCCACCACCCCCATCTG | 62.802 | 72.222 | 0.00 | 0.00 | 0.00 | 2.90 |
4275 | 5438 | 2.124695 | GGTTCTCATGACGCCCCC | 60.125 | 66.667 | 0.00 | 0.00 | 0.00 | 5.40 |
4276 | 5439 | 2.511600 | CGGTTCTCATGACGCCCC | 60.512 | 66.667 | 0.00 | 0.00 | 0.00 | 5.80 |
4277 | 5440 | 2.511600 | CCGGTTCTCATGACGCCC | 60.512 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
4278 | 5441 | 3.195698 | GCCGGTTCTCATGACGCC | 61.196 | 66.667 | 1.90 | 0.00 | 0.00 | 5.68 |
4279 | 5442 | 3.554692 | CGCCGGTTCTCATGACGC | 61.555 | 66.667 | 1.90 | 0.00 | 0.00 | 5.19 |
4280 | 5443 | 2.158959 | GTCGCCGGTTCTCATGACG | 61.159 | 63.158 | 1.90 | 0.00 | 0.00 | 4.35 |
4281 | 5444 | 2.158959 | CGTCGCCGGTTCTCATGAC | 61.159 | 63.158 | 1.90 | 0.00 | 0.00 | 3.06 |
4282 | 5445 | 2.180769 | CGTCGCCGGTTCTCATGA | 59.819 | 61.111 | 1.90 | 0.00 | 0.00 | 3.07 |
4414 | 5577 | 1.229690 | TACTTGGCCAGCCCCTACA | 60.230 | 57.895 | 5.11 | 0.00 | 34.56 | 2.74 |
4446 | 5609 | 4.778415 | CCTCGTCACAGCGGTCCG | 62.778 | 72.222 | 6.99 | 6.99 | 0.00 | 4.79 |
4466 | 5629 | 3.703127 | GTCACCGGGGTCCTCCAC | 61.703 | 72.222 | 2.12 | 0.00 | 37.22 | 4.02 |
4473 | 5636 | 3.602030 | AGAGGAGGTCACCGGGGT | 61.602 | 66.667 | 2.12 | 0.00 | 34.73 | 4.95 |
4483 | 5646 | 1.418334 | CATCTACACCCCAGAGGAGG | 58.582 | 60.000 | 0.00 | 0.00 | 39.89 | 4.30 |
4490 | 5653 | 3.792736 | GCCGCCATCTACACCCCA | 61.793 | 66.667 | 0.00 | 0.00 | 0.00 | 4.96 |
4571 | 5734 | 3.077556 | CTGTCCTCCCCACCCGAG | 61.078 | 72.222 | 0.00 | 0.00 | 0.00 | 4.63 |
4590 | 5753 | 4.083862 | GACCCTCTCCACCACGCC | 62.084 | 72.222 | 0.00 | 0.00 | 0.00 | 5.68 |
4591 | 5754 | 3.302347 | CTGACCCTCTCCACCACGC | 62.302 | 68.421 | 0.00 | 0.00 | 0.00 | 5.34 |
4592 | 5755 | 2.973899 | CTGACCCTCTCCACCACG | 59.026 | 66.667 | 0.00 | 0.00 | 0.00 | 4.94 |
4593 | 5756 | 2.665603 | GCTGACCCTCTCCACCAC | 59.334 | 66.667 | 0.00 | 0.00 | 0.00 | 4.16 |
4594 | 5757 | 2.997315 | CGCTGACCCTCTCCACCA | 60.997 | 66.667 | 0.00 | 0.00 | 0.00 | 4.17 |
4595 | 5758 | 3.775654 | CCGCTGACCCTCTCCACC | 61.776 | 72.222 | 0.00 | 0.00 | 0.00 | 4.61 |
4596 | 5759 | 4.459089 | GCCGCTGACCCTCTCCAC | 62.459 | 72.222 | 0.00 | 0.00 | 0.00 | 4.02 |
4599 | 5762 | 4.803426 | CACGCCGCTGACCCTCTC | 62.803 | 72.222 | 0.00 | 0.00 | 0.00 | 3.20 |
4610 | 5773 | 3.019003 | AATCCTCTCCACCACGCCG | 62.019 | 63.158 | 0.00 | 0.00 | 0.00 | 6.46 |
4611 | 5774 | 1.450312 | CAATCCTCTCCACCACGCC | 60.450 | 63.158 | 0.00 | 0.00 | 0.00 | 5.68 |
4612 | 5775 | 1.450312 | CCAATCCTCTCCACCACGC | 60.450 | 63.158 | 0.00 | 0.00 | 0.00 | 5.34 |
4613 | 5776 | 1.450312 | GCCAATCCTCTCCACCACG | 60.450 | 63.158 | 0.00 | 0.00 | 0.00 | 4.94 |
4614 | 5777 | 1.450312 | CGCCAATCCTCTCCACCAC | 60.450 | 63.158 | 0.00 | 0.00 | 0.00 | 4.16 |
4615 | 5778 | 2.669133 | CCGCCAATCCTCTCCACCA | 61.669 | 63.158 | 0.00 | 0.00 | 0.00 | 4.17 |
4616 | 5779 | 2.190578 | CCGCCAATCCTCTCCACC | 59.809 | 66.667 | 0.00 | 0.00 | 0.00 | 4.61 |
4617 | 5780 | 2.514824 | GCCGCCAATCCTCTCCAC | 60.515 | 66.667 | 0.00 | 0.00 | 0.00 | 4.02 |
4618 | 5781 | 4.161295 | CGCCGCCAATCCTCTCCA | 62.161 | 66.667 | 0.00 | 0.00 | 0.00 | 3.86 |
4664 | 5827 | 4.802051 | CCACCCACCCCATCGCTG | 62.802 | 72.222 | 0.00 | 0.00 | 0.00 | 5.18 |
4667 | 5830 | 4.424711 | CCACCACCCACCCCATCG | 62.425 | 72.222 | 0.00 | 0.00 | 0.00 | 3.84 |
4668 | 5831 | 3.264845 | ACCACCACCCACCCCATC | 61.265 | 66.667 | 0.00 | 0.00 | 0.00 | 3.51 |
4669 | 5832 | 3.589542 | CACCACCACCCACCCCAT | 61.590 | 66.667 | 0.00 | 0.00 | 0.00 | 4.00 |
4679 | 5842 | 0.391528 | CGATCATGTCTGCACCACCA | 60.392 | 55.000 | 0.00 | 0.00 | 0.00 | 4.17 |
4682 | 5845 | 0.612744 | TTCCGATCATGTCTGCACCA | 59.387 | 50.000 | 0.00 | 0.00 | 0.00 | 4.17 |
4685 | 5848 | 1.550072 | TCAGTTCCGATCATGTCTGCA | 59.450 | 47.619 | 0.00 | 0.00 | 0.00 | 4.41 |
4696 | 5859 | 4.720046 | AGTATCAGATAGCTCAGTTCCGA | 58.280 | 43.478 | 0.00 | 0.00 | 0.00 | 4.55 |
4703 | 5866 | 3.560239 | CGGAGGGAGTATCAGATAGCTCA | 60.560 | 52.174 | 15.94 | 0.00 | 36.25 | 4.26 |
4706 | 5869 | 2.750712 | GACGGAGGGAGTATCAGATAGC | 59.249 | 54.545 | 0.00 | 0.00 | 36.25 | 2.97 |
4710 | 5873 | 0.179026 | CGGACGGAGGGAGTATCAGA | 60.179 | 60.000 | 0.00 | 0.00 | 36.25 | 3.27 |
4718 | 5881 | 0.760572 | AACTTTTTCGGACGGAGGGA | 59.239 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
4719 | 5882 | 1.265905 | CAAACTTTTTCGGACGGAGGG | 59.734 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
4720 | 5883 | 1.944709 | ACAAACTTTTTCGGACGGAGG | 59.055 | 47.619 | 0.00 | 0.00 | 0.00 | 4.30 |
4721 | 5884 | 2.032290 | GGACAAACTTTTTCGGACGGAG | 60.032 | 50.000 | 0.00 | 0.00 | 0.00 | 4.63 |
4723 | 5886 | 1.944709 | AGGACAAACTTTTTCGGACGG | 59.055 | 47.619 | 0.00 | 0.00 | 0.00 | 4.79 |
4724 | 5887 | 3.064271 | TGAAGGACAAACTTTTTCGGACG | 59.936 | 43.478 | 0.00 | 0.00 | 0.00 | 4.79 |
4737 | 5900 | 7.828717 | TGCTAGATACATTCATTTGAAGGACAA | 59.171 | 33.333 | 11.51 | 0.00 | 37.99 | 3.18 |
4739 | 5902 | 7.497249 | AGTGCTAGATACATTCATTTGAAGGAC | 59.503 | 37.037 | 11.51 | 1.01 | 37.99 | 3.85 |
4740 | 5903 | 7.568349 | AGTGCTAGATACATTCATTTGAAGGA | 58.432 | 34.615 | 11.51 | 0.00 | 37.99 | 3.36 |
4741 | 5904 | 7.798596 | AGTGCTAGATACATTCATTTGAAGG | 57.201 | 36.000 | 3.59 | 3.59 | 41.16 | 3.46 |
4743 | 5906 | 9.890629 | ACTTAGTGCTAGATACATTCATTTGAA | 57.109 | 29.630 | 0.00 | 0.00 | 38.56 | 2.69 |
4744 | 5907 | 9.890629 | AACTTAGTGCTAGATACATTCATTTGA | 57.109 | 29.630 | 0.00 | 0.00 | 0.00 | 2.69 |
4762 | 5925 | 6.505272 | GGATGTACCTAGCACTAACTTAGTG | 58.495 | 44.000 | 20.51 | 20.51 | 45.68 | 2.74 |
4763 | 5926 | 6.192773 | TGGATGTACCTAGCACTAACTTAGT | 58.807 | 40.000 | 0.00 | 0.00 | 38.44 | 2.24 |
4764 | 5927 | 6.710597 | TGGATGTACCTAGCACTAACTTAG | 57.289 | 41.667 | 0.00 | 0.00 | 39.86 | 2.18 |
4765 | 5928 | 7.670605 | AATGGATGTACCTAGCACTAACTTA | 57.329 | 36.000 | 0.00 | 0.00 | 39.86 | 2.24 |
4767 | 5930 | 6.156256 | TCAAATGGATGTACCTAGCACTAACT | 59.844 | 38.462 | 0.00 | 0.00 | 39.86 | 2.24 |
4769 | 5932 | 6.408092 | CCTCAAATGGATGTACCTAGCACTAA | 60.408 | 42.308 | 0.00 | 0.00 | 39.86 | 2.24 |
4770 | 5933 | 5.070446 | CCTCAAATGGATGTACCTAGCACTA | 59.930 | 44.000 | 0.00 | 0.00 | 39.86 | 2.74 |
4773 | 5936 | 4.037222 | TCCTCAAATGGATGTACCTAGCA | 58.963 | 43.478 | 0.00 | 0.00 | 39.86 | 3.49 |
4774 | 5937 | 4.636249 | CTCCTCAAATGGATGTACCTAGC | 58.364 | 47.826 | 0.00 | 0.00 | 39.86 | 3.42 |
4775 | 5938 | 4.101585 | TGCTCCTCAAATGGATGTACCTAG | 59.898 | 45.833 | 0.00 | 0.00 | 39.86 | 3.02 |
4776 | 5939 | 4.037222 | TGCTCCTCAAATGGATGTACCTA | 58.963 | 43.478 | 0.00 | 0.00 | 39.86 | 3.08 |
4777 | 5940 | 2.846206 | TGCTCCTCAAATGGATGTACCT | 59.154 | 45.455 | 0.00 | 0.00 | 39.86 | 3.08 |
4780 | 5943 | 3.054139 | AGCTTGCTCCTCAAATGGATGTA | 60.054 | 43.478 | 0.00 | 0.00 | 35.30 | 2.29 |
4782 | 5945 | 2.376109 | AGCTTGCTCCTCAAATGGATG | 58.624 | 47.619 | 0.00 | 0.00 | 35.30 | 3.51 |
4783 | 5946 | 2.758979 | CAAGCTTGCTCCTCAAATGGAT | 59.241 | 45.455 | 14.65 | 0.00 | 35.30 | 3.41 |
4784 | 5947 | 2.165167 | CAAGCTTGCTCCTCAAATGGA | 58.835 | 47.619 | 14.65 | 0.00 | 33.65 | 3.41 |
4786 | 5949 | 1.203994 | CCCAAGCTTGCTCCTCAAATG | 59.796 | 52.381 | 21.43 | 3.08 | 33.65 | 2.32 |
4787 | 5950 | 1.076024 | TCCCAAGCTTGCTCCTCAAAT | 59.924 | 47.619 | 21.43 | 0.00 | 33.65 | 2.32 |
4788 | 5951 | 0.478072 | TCCCAAGCTTGCTCCTCAAA | 59.522 | 50.000 | 21.43 | 0.00 | 33.65 | 2.69 |
4789 | 5952 | 0.250901 | GTCCCAAGCTTGCTCCTCAA | 60.251 | 55.000 | 21.43 | 0.00 | 0.00 | 3.02 |
4790 | 5953 | 1.376466 | GTCCCAAGCTTGCTCCTCA | 59.624 | 57.895 | 21.43 | 0.00 | 0.00 | 3.86 |
4791 | 5954 | 0.250901 | TTGTCCCAAGCTTGCTCCTC | 60.251 | 55.000 | 21.43 | 9.19 | 0.00 | 3.71 |
4792 | 5955 | 0.251077 | CTTGTCCCAAGCTTGCTCCT | 60.251 | 55.000 | 21.43 | 0.00 | 0.00 | 3.69 |
4793 | 5956 | 1.871126 | GCTTGTCCCAAGCTTGCTCC | 61.871 | 60.000 | 21.43 | 10.31 | 40.01 | 4.70 |
4794 | 5957 | 1.583477 | GCTTGTCCCAAGCTTGCTC | 59.417 | 57.895 | 21.43 | 12.83 | 40.01 | 4.26 |
4795 | 5958 | 3.769201 | GCTTGTCCCAAGCTTGCT | 58.231 | 55.556 | 21.43 | 0.00 | 40.01 | 3.91 |
4803 | 5966 | 0.536460 | GTCCGGAAAAGCTTGTCCCA | 60.536 | 55.000 | 26.94 | 13.18 | 0.00 | 4.37 |
4805 | 5968 | 1.574702 | CCGTCCGGAAAAGCTTGTCC | 61.575 | 60.000 | 24.00 | 24.00 | 37.50 | 4.02 |
4806 | 5969 | 0.601841 | TCCGTCCGGAAAAGCTTGTC | 60.602 | 55.000 | 5.23 | 8.23 | 42.05 | 3.18 |
4807 | 5970 | 0.602905 | CTCCGTCCGGAAAAGCTTGT | 60.603 | 55.000 | 5.23 | 0.00 | 44.66 | 3.16 |
4808 | 5971 | 1.298859 | CCTCCGTCCGGAAAAGCTTG | 61.299 | 60.000 | 5.23 | 0.00 | 44.66 | 4.01 |
4809 | 5972 | 1.003718 | CCTCCGTCCGGAAAAGCTT | 60.004 | 57.895 | 5.23 | 0.00 | 44.66 | 3.74 |
4810 | 5973 | 2.663196 | CCTCCGTCCGGAAAAGCT | 59.337 | 61.111 | 5.23 | 0.00 | 44.66 | 3.74 |
4814 | 5977 | 0.967380 | GTACTCCCTCCGTCCGGAAA | 60.967 | 60.000 | 5.23 | 0.00 | 44.66 | 3.13 |
4815 | 5978 | 1.379044 | GTACTCCCTCCGTCCGGAA | 60.379 | 63.158 | 5.23 | 0.00 | 44.66 | 4.30 |
4816 | 5979 | 2.273449 | GTACTCCCTCCGTCCGGA | 59.727 | 66.667 | 0.00 | 0.00 | 42.90 | 5.14 |
4818 | 5981 | 1.252904 | TTTGGTACTCCCTCCGTCCG | 61.253 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
4819 | 5982 | 1.201424 | ATTTGGTACTCCCTCCGTCC | 58.799 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
4820 | 5983 | 2.629051 | CAATTTGGTACTCCCTCCGTC | 58.371 | 52.381 | 0.00 | 0.00 | 0.00 | 4.79 |
4821 | 5984 | 1.280998 | CCAATTTGGTACTCCCTCCGT | 59.719 | 52.381 | 7.31 | 0.00 | 31.35 | 4.69 |
4822 | 5985 | 2.038387 | CCAATTTGGTACTCCCTCCG | 57.962 | 55.000 | 7.31 | 0.00 | 31.35 | 4.63 |
4829 | 5992 | 7.202251 | AACCCTAGTTTCTACCAATTTGGTACT | 60.202 | 37.037 | 21.76 | 20.87 | 40.65 | 2.73 |
4831 | 5994 | 7.017850 | AGAACCCTAGTTTCTACCAATTTGGTA | 59.982 | 37.037 | 23.53 | 23.53 | 42.54 | 3.25 |
4832 | 5995 | 5.960704 | AACCCTAGTTTCTACCAATTTGGT | 58.039 | 37.500 | 23.83 | 23.83 | 43.60 | 3.67 |
4833 | 5996 | 6.246163 | AGAACCCTAGTTTCTACCAATTTGG | 58.754 | 40.000 | 14.02 | 14.02 | 39.04 | 3.28 |
4834 | 5997 | 8.101419 | AGTAGAACCCTAGTTTCTACCAATTTG | 58.899 | 37.037 | 24.63 | 0.00 | 37.34 | 2.32 |
4860 | 8439 | 1.048724 | CAATCTCCGCCCTAGACCCA | 61.049 | 60.000 | 0.00 | 0.00 | 0.00 | 4.51 |
5111 | 8693 | 2.158460 | GGCCTGGCCCAGTTATCTTATT | 60.158 | 50.000 | 27.77 | 0.00 | 44.06 | 1.40 |
5182 | 8765 | 4.277423 | ACCTGACCCAAAATAAGTGTTTCG | 59.723 | 41.667 | 0.00 | 0.00 | 0.00 | 3.46 |
5339 | 8930 | 5.306678 | CCAAGCCTTCCTATCTCTACTCAAT | 59.693 | 44.000 | 0.00 | 0.00 | 0.00 | 2.57 |
5341 | 8932 | 4.219115 | CCAAGCCTTCCTATCTCTACTCA | 58.781 | 47.826 | 0.00 | 0.00 | 0.00 | 3.41 |
5342 | 8933 | 3.006430 | GCCAAGCCTTCCTATCTCTACTC | 59.994 | 52.174 | 0.00 | 0.00 | 0.00 | 2.59 |
5344 | 8935 | 2.700897 | TGCCAAGCCTTCCTATCTCTAC | 59.299 | 50.000 | 0.00 | 0.00 | 0.00 | 2.59 |
5346 | 8937 | 1.488393 | GTGCCAAGCCTTCCTATCTCT | 59.512 | 52.381 | 0.00 | 0.00 | 0.00 | 3.10 |
5347 | 8938 | 1.808133 | CGTGCCAAGCCTTCCTATCTC | 60.808 | 57.143 | 0.00 | 0.00 | 0.00 | 2.75 |
5348 | 8939 | 0.179000 | CGTGCCAAGCCTTCCTATCT | 59.821 | 55.000 | 0.00 | 0.00 | 0.00 | 1.98 |
5349 | 8940 | 0.107654 | ACGTGCCAAGCCTTCCTATC | 60.108 | 55.000 | 0.00 | 0.00 | 0.00 | 2.08 |
5350 | 8941 | 0.392998 | CACGTGCCAAGCCTTCCTAT | 60.393 | 55.000 | 0.82 | 0.00 | 0.00 | 2.57 |
5351 | 8942 | 1.003839 | CACGTGCCAAGCCTTCCTA | 60.004 | 57.895 | 0.82 | 0.00 | 0.00 | 2.94 |
5352 | 8943 | 2.281761 | CACGTGCCAAGCCTTCCT | 60.282 | 61.111 | 0.82 | 0.00 | 0.00 | 3.36 |
5355 | 8946 | 1.066454 | GTTAAACACGTGCCAAGCCTT | 59.934 | 47.619 | 17.22 | 0.00 | 0.00 | 4.35 |
5357 | 8948 | 0.382515 | TGTTAAACACGTGCCAAGCC | 59.617 | 50.000 | 17.22 | 0.00 | 0.00 | 4.35 |
5358 | 8949 | 2.116366 | CTTGTTAAACACGTGCCAAGC | 58.884 | 47.619 | 17.22 | 3.46 | 0.00 | 4.01 |
5359 | 8950 | 3.414549 | ACTTGTTAAACACGTGCCAAG | 57.585 | 42.857 | 17.22 | 19.74 | 36.32 | 3.61 |
5362 | 8953 | 4.275838 | TGTTACTTGTTAAACACGTGCC | 57.724 | 40.909 | 17.22 | 0.00 | 32.59 | 5.01 |
5363 | 8954 | 6.251801 | ACATTTGTTACTTGTTAAACACGTGC | 59.748 | 34.615 | 17.22 | 0.00 | 35.43 | 5.34 |
5364 | 8955 | 7.728580 | ACATTTGTTACTTGTTAAACACGTG | 57.271 | 32.000 | 15.48 | 15.48 | 35.43 | 4.49 |
5365 | 8956 | 8.449397 | TGTACATTTGTTACTTGTTAAACACGT | 58.551 | 29.630 | 0.00 | 0.00 | 35.43 | 4.49 |
5366 | 8957 | 8.823584 | TGTACATTTGTTACTTGTTAAACACG | 57.176 | 30.769 | 0.00 | 0.00 | 35.43 | 4.49 |
5490 | 9082 | 6.494893 | AGCTGAAGTAAATTTATTGTCGCA | 57.505 | 33.333 | 0.31 | 0.00 | 0.00 | 5.10 |
5643 | 10273 | 8.918202 | TTTTCTCAGAGGTGTGTACAATTTAT | 57.082 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
5752 | 10384 | 9.965824 | CAAATGTACTGAAATAACTTGGTTTCT | 57.034 | 29.630 | 0.00 | 0.00 | 35.80 | 2.52 |
5824 | 10456 | 2.295349 | GGGCATTCCAGATGCAAGTATG | 59.705 | 50.000 | 12.45 | 0.00 | 46.21 | 2.39 |
5838 | 11602 | 1.202290 | CCAACGCATTGTAGGGCATTC | 60.202 | 52.381 | 0.00 | 0.00 | 33.60 | 2.67 |
6004 | 11768 | 5.649782 | AAATAAACAGGACAATGAGGCAG | 57.350 | 39.130 | 0.00 | 0.00 | 0.00 | 4.85 |
6261 | 12191 | 6.210385 | ACATGATAGTGAATAGTCTGCTAGGG | 59.790 | 42.308 | 0.00 | 0.00 | 0.00 | 3.53 |
6299 | 12229 | 6.000219 | ACAATACATAAAGCAGGGCTAGATG | 59.000 | 40.000 | 0.00 | 9.48 | 38.25 | 2.90 |
6311 | 12241 | 9.342308 | ACCATGAATACAGGACAATACATAAAG | 57.658 | 33.333 | 0.00 | 0.00 | 0.00 | 1.85 |
6322 | 12252 | 3.550437 | AGCTGACCATGAATACAGGAC | 57.450 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
6466 | 12406 | 0.108945 | GGCATCAAGAGGCTGCAAAC | 60.109 | 55.000 | 6.67 | 0.00 | 38.32 | 2.93 |
6738 | 12678 | 3.411351 | CCGTGTCCTGCGTTTCCG | 61.411 | 66.667 | 0.00 | 0.00 | 37.07 | 4.30 |
6851 | 12793 | 8.531530 | CCGAATACGAAATTGAATTTTTCATCC | 58.468 | 33.333 | 4.46 | 0.00 | 39.67 | 3.51 |
6852 | 12794 | 8.531530 | CCCGAATACGAAATTGAATTTTTCATC | 58.468 | 33.333 | 4.46 | 0.74 | 39.67 | 2.92 |
6853 | 12795 | 8.247562 | TCCCGAATACGAAATTGAATTTTTCAT | 58.752 | 29.630 | 4.46 | 0.00 | 39.67 | 2.57 |
6854 | 12796 | 7.539366 | GTCCCGAATACGAAATTGAATTTTTCA | 59.461 | 33.333 | 4.46 | 0.00 | 42.66 | 2.69 |
6855 | 12797 | 7.253190 | CGTCCCGAATACGAAATTGAATTTTTC | 60.253 | 37.037 | 4.46 | 4.06 | 42.90 | 2.29 |
6856 | 12798 | 6.525280 | CGTCCCGAATACGAAATTGAATTTTT | 59.475 | 34.615 | 4.46 | 0.00 | 42.90 | 1.94 |
6885 | 12831 | 4.019051 | TGGCTTCAGAATTTCAGATCTGGA | 60.019 | 41.667 | 22.42 | 11.83 | 42.62 | 3.86 |
6964 | 12911 | 1.135489 | CACACCAATCATGCAGCTGAC | 60.135 | 52.381 | 20.43 | 9.67 | 0.00 | 3.51 |
7021 | 12968 | 4.148825 | CCCTTCCTCTGCCCGTCG | 62.149 | 72.222 | 0.00 | 0.00 | 0.00 | 5.12 |
7064 | 13017 | 0.524862 | CTTCAGCCTGCAACACATCC | 59.475 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
7066 | 13019 | 1.859427 | CGCTTCAGCCTGCAACACAT | 61.859 | 55.000 | 0.00 | 0.00 | 37.91 | 3.21 |
7067 | 13020 | 2.545596 | CGCTTCAGCCTGCAACACA | 61.546 | 57.895 | 0.00 | 0.00 | 37.91 | 3.72 |
7068 | 13021 | 2.180131 | CTCGCTTCAGCCTGCAACAC | 62.180 | 60.000 | 0.00 | 0.00 | 37.91 | 3.32 |
7071 | 13024 | 3.052082 | GCTCGCTTCAGCCTGCAA | 61.052 | 61.111 | 5.98 | 0.00 | 37.91 | 4.08 |
7076 | 13029 | 1.963338 | ACAAGTGCTCGCTTCAGCC | 60.963 | 57.895 | 0.00 | 0.00 | 38.80 | 4.85 |
7077 | 13030 | 1.206072 | CACAAGTGCTCGCTTCAGC | 59.794 | 57.895 | 0.00 | 0.00 | 40.13 | 4.26 |
7292 | 13356 | 0.891904 | TTAGGTGAAAAGTGCCCGGC | 60.892 | 55.000 | 1.04 | 1.04 | 0.00 | 6.13 |
7313 | 13377 | 9.071221 | CACCTGTTTTTAAAAAGAAAAATTGGC | 57.929 | 29.630 | 13.58 | 0.00 | 39.71 | 4.52 |
7327 | 13391 | 9.675464 | ACGATATAGGAAATCACCTGTTTTTAA | 57.325 | 29.630 | 0.00 | 0.00 | 40.81 | 1.52 |
7328 | 13392 | 9.675464 | AACGATATAGGAAATCACCTGTTTTTA | 57.325 | 29.630 | 0.00 | 0.00 | 40.81 | 1.52 |
7336 | 13474 | 7.282450 | ACCAAAGAAACGATATAGGAAATCACC | 59.718 | 37.037 | 0.00 | 0.00 | 0.00 | 4.02 |
7351 | 13489 | 2.467305 | CGTTGATTGCACCAAAGAAACG | 59.533 | 45.455 | 7.78 | 4.50 | 34.22 | 3.60 |
7420 | 13559 | 8.722480 | TTCTAATGACATAAGAACATGGTGAG | 57.278 | 34.615 | 0.00 | 0.00 | 0.00 | 3.51 |
7424 | 13563 | 7.095060 | CGGGATTCTAATGACATAAGAACATGG | 60.095 | 40.741 | 0.00 | 0.00 | 32.38 | 3.66 |
7451 | 13590 | 3.401033 | TCTTGCGGACTCTTTGATTCA | 57.599 | 42.857 | 0.00 | 0.00 | 0.00 | 2.57 |
7466 | 13605 | 0.928229 | CGCAGGGTTACGTATCTTGC | 59.072 | 55.000 | 17.52 | 17.52 | 0.00 | 4.01 |
7468 | 13607 | 3.131577 | TGATTCGCAGGGTTACGTATCTT | 59.868 | 43.478 | 0.00 | 0.00 | 37.11 | 2.40 |
7507 | 13646 | 4.248859 | ACACCTTTGATTCGATGAGTCTG | 58.751 | 43.478 | 0.00 | 0.00 | 0.00 | 3.51 |
7511 | 13650 | 3.372206 | GTGGACACCTTTGATTCGATGAG | 59.628 | 47.826 | 0.00 | 0.00 | 0.00 | 2.90 |
7526 | 13665 | 6.317088 | CACAATTCATATCTTGTGTGGACAC | 58.683 | 40.000 | 2.81 | 2.81 | 44.51 | 3.67 |
7570 | 13709 | 1.281899 | GAGATTACTGCTGTGACCGC | 58.718 | 55.000 | 6.48 | 0.00 | 0.00 | 5.68 |
7643 | 13782 | 1.017177 | TAACAGCGACGGCATTCACC | 61.017 | 55.000 | 0.00 | 0.00 | 43.41 | 4.02 |
7678 | 13817 | 2.044280 | TCCCCATCCATGGCCTCA | 59.956 | 61.111 | 6.96 | 0.00 | 46.70 | 3.86 |
7679 | 13818 | 2.517919 | GTCCCCATCCATGGCCTC | 59.482 | 66.667 | 6.96 | 0.00 | 46.70 | 4.70 |
7680 | 13819 | 3.105928 | GGTCCCCATCCATGGCCT | 61.106 | 66.667 | 6.96 | 0.00 | 46.70 | 5.19 |
7691 | 13830 | 4.436998 | CGTGTCAGCGAGGTCCCC | 62.437 | 72.222 | 0.00 | 0.00 | 0.00 | 4.81 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.