Multiple sequence alignment - TraesCS5A01G060600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G060600 chr5A 100.000 6243 0 0 1 6243 64371551 64365309 0.000000e+00 11529.0
1 TraesCS5A01G060600 chr5A 94.253 87 1 2 3803 3887 64367665 64367749 5.080000e-26 130.0
2 TraesCS5A01G060600 chr5A 91.139 79 5 2 5687 5764 339739776 339739853 8.560000e-19 106.0
3 TraesCS5A01G060600 chr5A 92.000 75 5 1 5687 5761 38014632 38014705 3.080000e-18 104.0
4 TraesCS5A01G060600 chr5A 91.781 73 5 1 5690 5762 90623731 90623660 3.980000e-17 100.0
5 TraesCS5A01G060600 chr5D 93.443 3889 132 58 7 3842 71892711 71888893 0.000000e+00 5655.0
6 TraesCS5A01G060600 chr5D 94.232 2167 79 18 3814 5946 71888863 71886709 0.000000e+00 3267.0
7 TraesCS5A01G060600 chr5D 96.053 76 3 0 5999 6074 71886708 71886633 2.360000e-24 124.0
8 TraesCS5A01G060600 chr5D 97.143 70 2 0 6174 6243 51253991 51253922 1.100000e-22 119.0
9 TraesCS5A01G060600 chr5D 97.143 70 2 0 6174 6243 51330557 51330488 1.100000e-22 119.0
10 TraesCS5A01G060600 chr5D 97.143 70 2 0 6174 6243 174442947 174442878 1.100000e-22 119.0
11 TraesCS5A01G060600 chr5D 95.890 73 3 0 6171 6243 188340190 188340262 1.100000e-22 119.0
12 TraesCS5A01G060600 chr5D 95.890 73 3 0 6171 6243 339726074 339726146 1.100000e-22 119.0
13 TraesCS5A01G060600 chr5B 95.097 2162 66 23 3814 5946 82475808 82477958 0.000000e+00 3369.0
14 TraesCS5A01G060600 chr5B 96.684 1568 36 9 2283 3842 82474248 82475807 0.000000e+00 2593.0
15 TraesCS5A01G060600 chr5B 91.050 1609 68 39 692 2291 82472376 82473917 0.000000e+00 2104.0
16 TraesCS5A01G060600 chr5B 87.755 539 23 12 116 637 82471410 82471922 1.940000e-164 590.0
17 TraesCS5A01G060600 chr5B 93.671 79 5 0 5999 6077 82477959 82478037 1.100000e-22 119.0
18 TraesCS5A01G060600 chr5B 90.789 76 5 2 5686 5761 315892279 315892352 3.980000e-17 100.0
19 TraesCS5A01G060600 chrUn 91.398 93 5 2 3795 3887 110464732 110464821 2.360000e-24 124.0
20 TraesCS5A01G060600 chr4B 93.103 87 3 2 3801 3887 660491494 660491577 2.360000e-24 124.0
21 TraesCS5A01G060600 chr4B 79.825 114 14 5 5834 5943 283346127 283346235 2.410000e-09 75.0
22 TraesCS5A01G060600 chr4A 93.023 86 4 1 3802 3887 338747849 338747766 2.360000e-24 124.0
23 TraesCS5A01G060600 chr4A 80.833 120 13 6 5836 5950 41424305 41424191 1.120000e-12 86.1
24 TraesCS5A01G060600 chr4A 81.905 105 9 7 5845 5944 123023716 123023815 5.190000e-11 80.5
25 TraesCS5A01G060600 chr2B 97.183 71 2 0 6173 6243 49315698 49315628 3.060000e-23 121.0
26 TraesCS5A01G060600 chr6B 95.890 73 3 0 6171 6243 39196692 39196764 1.100000e-22 119.0
27 TraesCS5A01G060600 chr3D 95.890 73 3 0 6171 6243 466287147 466287219 1.100000e-22 119.0
28 TraesCS5A01G060600 chr3D 83.333 126 12 6 5832 5953 601236403 601236523 2.380000e-19 108.0
29 TraesCS5A01G060600 chr3B 92.857 84 3 2 3802 3884 501117559 501117640 1.100000e-22 119.0
30 TraesCS5A01G060600 chr3B 88.542 96 8 2 3793 3887 501117653 501117560 5.120000e-21 113.0
31 TraesCS5A01G060600 chr1A 95.890 73 3 0 6171 6243 155914677 155914749 1.100000e-22 119.0
32 TraesCS5A01G060600 chr4D 90.110 91 6 3 3801 3891 486185341 486185428 1.420000e-21 115.0
33 TraesCS5A01G060600 chr4D 93.056 72 4 1 5690 5761 485409421 485409351 3.080000e-18 104.0
34 TraesCS5A01G060600 chr7A 94.444 72 4 0 5690 5761 34742900 34742829 1.840000e-20 111.0
35 TraesCS5A01G060600 chr7A 83.077 130 10 7 5832 5955 71052147 71052270 2.380000e-19 108.0
36 TraesCS5A01G060600 chr7A 80.159 126 15 5 5836 5955 6607940 6607819 1.120000e-12 86.1
37 TraesCS5A01G060600 chr7D 92.000 75 5 1 5687 5761 50328542 50328615 3.080000e-18 104.0
38 TraesCS5A01G060600 chr7D 79.825 114 16 5 5835 5945 42222646 42222537 6.710000e-10 76.8
39 TraesCS5A01G060600 chr7D 84.211 76 9 1 5974 6049 99790749 99790677 3.120000e-08 71.3
40 TraesCS5A01G060600 chr1B 88.235 85 9 1 5687 5771 187714297 187714380 3.980000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G060600 chr5A 64365309 64371551 6242 True 11529.000000 11529 100.0000 1 6243 1 chr5A.!!$R1 6242
1 TraesCS5A01G060600 chr5D 71886633 71892711 6078 True 3015.333333 5655 94.5760 7 6074 3 chr5D.!!$R4 6067
2 TraesCS5A01G060600 chr5B 82471410 82478037 6627 False 1755.000000 3369 92.8514 116 6077 5 chr5B.!!$F2 5961

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
817 1267 0.035458 CCGCTCCCCCTTTGCTATAG 59.965 60.000 0.0 0.0 0.00 1.31 F
1346 1802 0.111089 GACGAGTGCTTGTTTCGCAG 60.111 55.000 0.0 0.0 38.19 5.18 F
1880 2340 1.084370 GTCCGACTCCGATTTGGCAG 61.084 60.000 0.0 0.0 38.22 4.85 F
2542 3346 1.471119 ATCAGCAGGAATGCCTTGTG 58.529 50.000 0.0 0.0 43.90 3.33 F
3178 3983 3.532102 AGGATTCTCACCAACCCTAGTT 58.468 45.455 0.0 0.0 36.33 2.24 F
3593 4399 2.519771 ATGCCCACACAACTGATGAT 57.480 45.000 0.0 0.0 0.00 2.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2403 3206 1.442769 AACTAACTCTGGTGCATGCG 58.557 50.000 14.09 0.0 0.00 4.73 R
2490 3294 2.664402 ACAGGGCAAATCAGTCAAGT 57.336 45.000 0.00 0.0 0.00 3.16 R
3401 4206 0.537188 AACATGCTAGACCTGACGGG 59.463 55.000 0.00 0.0 41.89 5.28 R
3593 4399 0.550147 AGAAAGCCTGGGCCTTCCTA 60.550 55.000 16.55 0.0 41.14 2.94 R
3985 4850 2.571212 AGCTCAACCAAACGATTGACA 58.429 42.857 7.03 0.0 38.94 3.58 R
5511 6386 0.530870 GACCTGATCGCTAACCAGCC 60.531 60.000 0.00 0.0 45.64 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.780624 AAATCCCCACGAATCTCCG 57.219 52.632 0.00 0.00 0.00 4.63
19 20 0.180406 AAATCCCCACGAATCTCCGG 59.820 55.000 0.00 0.00 0.00 5.14
37 38 5.356751 TCTCCGGGTAAAATCAAATGATGTG 59.643 40.000 0.00 0.00 34.49 3.21
38 39 4.400884 TCCGGGTAAAATCAAATGATGTGG 59.599 41.667 0.00 0.00 34.49 4.17
47 48 7.630242 AAATCAAATGATGTGGACGTTAGAT 57.370 32.000 0.00 0.00 34.49 1.98
51 52 4.736126 ATGATGTGGACGTTAGATGTGA 57.264 40.909 0.00 0.00 0.00 3.58
57 58 4.056050 GTGGACGTTAGATGTGACTTTGT 58.944 43.478 0.00 0.00 0.00 2.83
69 70 8.994429 AGATGTGACTTTGTTAACTCTCATAG 57.006 34.615 7.22 0.00 0.00 2.23
70 71 8.589338 AGATGTGACTTTGTTAACTCTCATAGT 58.411 33.333 7.22 0.00 41.49 2.12
81 82 3.847081 ACTCTCATAGTTAGCCCTACCC 58.153 50.000 0.00 0.00 33.35 3.69
82 83 3.166679 CTCTCATAGTTAGCCCTACCCC 58.833 54.545 0.00 0.00 0.00 4.95
84 85 3.992311 TCTCATAGTTAGCCCTACCCCTA 59.008 47.826 0.00 0.00 0.00 3.53
85 86 4.611150 TCTCATAGTTAGCCCTACCCCTAT 59.389 45.833 0.00 0.00 0.00 2.57
86 87 5.799581 TCTCATAGTTAGCCCTACCCCTATA 59.200 44.000 0.00 0.00 0.00 1.31
88 89 7.035320 TCTCATAGTTAGCCCTACCCCTATAAT 60.035 40.741 0.00 0.00 0.00 1.28
89 90 6.901300 TCATAGTTAGCCCTACCCCTATAATG 59.099 42.308 0.00 0.00 0.00 1.90
92 106 6.021672 AGTTAGCCCTACCCCTATAATGTAC 58.978 44.000 0.00 0.00 0.00 2.90
101 115 6.187727 ACCCCTATAATGTACAACATGGAG 57.812 41.667 0.00 0.00 37.97 3.86
130 151 5.163099 TGGGACATGAAGAAAAAGGAGAGAA 60.163 40.000 0.00 0.00 0.00 2.87
266 294 0.107831 TAGGCAGACAAGCAAACGGT 59.892 50.000 0.00 0.00 35.83 4.83
270 298 2.076863 GCAGACAAGCAAACGGTAGAT 58.923 47.619 0.00 0.00 0.00 1.98
282 310 3.680842 GGTAGATGGCGACCGAAAT 57.319 52.632 0.00 0.00 29.97 2.17
283 311 2.806608 GGTAGATGGCGACCGAAATA 57.193 50.000 0.00 0.00 29.97 1.40
312 340 2.126307 CGAGTGGCACGGAGACAG 60.126 66.667 12.71 0.00 0.00 3.51
324 352 2.494870 ACGGAGACAGGCGTAAAGTATT 59.505 45.455 0.00 0.00 0.00 1.89
334 362 2.419159 GCGTAAAGTATTCCGGGGAACT 60.419 50.000 0.00 0.00 36.91 3.01
335 363 3.181476 GCGTAAAGTATTCCGGGGAACTA 60.181 47.826 0.00 0.00 36.91 2.24
336 364 4.680440 GCGTAAAGTATTCCGGGGAACTAA 60.680 45.833 0.00 0.00 36.91 2.24
337 365 5.418676 CGTAAAGTATTCCGGGGAACTAAA 58.581 41.667 0.00 0.00 36.91 1.85
338 366 5.291858 CGTAAAGTATTCCGGGGAACTAAAC 59.708 44.000 0.00 4.01 36.91 2.01
339 367 4.914177 AAGTATTCCGGGGAACTAAACA 57.086 40.909 0.00 0.00 36.91 2.83
340 368 4.482952 AGTATTCCGGGGAACTAAACAG 57.517 45.455 0.00 0.00 36.91 3.16
341 369 3.842436 AGTATTCCGGGGAACTAAACAGT 59.158 43.478 0.00 0.00 36.91 3.55
342 370 3.801307 ATTCCGGGGAACTAAACAGTT 57.199 42.857 0.00 0.00 36.91 3.16
343 371 2.554370 TCCGGGGAACTAAACAGTTG 57.446 50.000 0.00 0.00 31.35 3.16
344 372 1.072648 TCCGGGGAACTAAACAGTTGG 59.927 52.381 0.00 0.00 31.35 3.77
345 373 1.530323 CGGGGAACTAAACAGTTGGG 58.470 55.000 0.00 0.00 31.35 4.12
346 374 1.254026 GGGGAACTAAACAGTTGGGC 58.746 55.000 0.00 0.00 31.35 5.36
396 428 1.687493 CTCCTCCTCCTTCCGGCTT 60.687 63.158 0.00 0.00 0.00 4.35
476 508 1.696063 CCCAATCATGAGCCCGAAAT 58.304 50.000 0.09 0.00 0.00 2.17
530 562 0.605589 CAAACGAACCTCCCACTCCC 60.606 60.000 0.00 0.00 0.00 4.30
531 563 1.057851 AAACGAACCTCCCACTCCCA 61.058 55.000 0.00 0.00 0.00 4.37
533 565 2.955881 CGAACCTCCCACTCCCACC 61.956 68.421 0.00 0.00 0.00 4.61
814 1264 2.285069 TCCGCTCCCCCTTTGCTA 60.285 61.111 0.00 0.00 0.00 3.49
815 1265 1.692749 TCCGCTCCCCCTTTGCTAT 60.693 57.895 0.00 0.00 0.00 2.97
816 1266 0.399376 TCCGCTCCCCCTTTGCTATA 60.399 55.000 0.00 0.00 0.00 1.31
817 1267 0.035458 CCGCTCCCCCTTTGCTATAG 59.965 60.000 0.00 0.00 0.00 1.31
818 1268 1.048601 CGCTCCCCCTTTGCTATAGA 58.951 55.000 3.21 0.00 0.00 1.98
819 1269 1.001406 CGCTCCCCCTTTGCTATAGAG 59.999 57.143 3.21 0.00 0.00 2.43
820 1270 2.050918 GCTCCCCCTTTGCTATAGAGT 58.949 52.381 3.21 0.00 0.00 3.24
821 1271 2.037902 GCTCCCCCTTTGCTATAGAGTC 59.962 54.545 3.21 0.00 0.00 3.36
822 1272 2.635427 CTCCCCCTTTGCTATAGAGTCC 59.365 54.545 3.21 0.00 0.00 3.85
823 1273 2.022428 TCCCCCTTTGCTATAGAGTCCA 60.022 50.000 3.21 0.00 0.00 4.02
824 1274 2.370189 CCCCCTTTGCTATAGAGTCCAG 59.630 54.545 3.21 0.00 0.00 3.86
825 1275 3.309296 CCCCTTTGCTATAGAGTCCAGA 58.691 50.000 3.21 0.00 0.00 3.86
828 1284 3.244044 CCTTTGCTATAGAGTCCAGAGCC 60.244 52.174 3.21 0.00 31.98 4.70
831 1287 1.540267 CTATAGAGTCCAGAGCCCGG 58.460 60.000 0.00 0.00 0.00 5.73
865 1321 4.351938 CCTCACGACGCGGGTTCA 62.352 66.667 12.47 0.00 0.00 3.18
866 1322 2.805353 CTCACGACGCGGGTTCAG 60.805 66.667 12.47 4.38 0.00 3.02
884 1340 4.731612 CGCTGCGGCTGACTGACT 62.732 66.667 17.03 0.00 36.09 3.41
895 1351 1.371558 GACTGACTGGGTGGTGGTC 59.628 63.158 0.00 0.00 0.00 4.02
896 1352 2.343758 CTGACTGGGTGGTGGTCG 59.656 66.667 0.00 0.00 33.21 4.79
897 1353 2.123208 TGACTGGGTGGTGGTCGA 60.123 61.111 0.00 0.00 33.21 4.20
898 1354 2.342648 GACTGGGTGGTGGTCGAC 59.657 66.667 7.13 7.13 0.00 4.20
899 1355 3.236003 GACTGGGTGGTGGTCGACC 62.236 68.421 28.17 28.17 46.37 4.79
920 1376 2.893398 GCAGGATCGAAGACCGGT 59.107 61.111 6.92 6.92 42.51 5.28
952 1408 4.266070 GCGGCCGCGATGACTAGA 62.266 66.667 37.24 0.00 0.00 2.43
960 1416 1.465200 GCGATGACTAGAGGGGGTCC 61.465 65.000 0.00 0.00 0.00 4.46
1164 1620 1.532921 CGCCGTTGTTTTCTGCTTCAA 60.533 47.619 0.00 0.00 0.00 2.69
1165 1621 2.742774 GCCGTTGTTTTCTGCTTCAAT 58.257 42.857 0.00 0.00 0.00 2.57
1171 1627 5.552472 CGTTGTTTTCTGCTTCAATTTCGTG 60.552 40.000 0.00 0.00 0.00 4.35
1195 1651 3.084786 GGGGGAACTGAACTGAATTGAG 58.915 50.000 0.00 0.00 0.00 3.02
1197 1653 2.160417 GGGAACTGAACTGAATTGAGCG 59.840 50.000 0.00 0.00 0.00 5.03
1198 1654 2.413371 GGAACTGAACTGAATTGAGCGC 60.413 50.000 0.00 0.00 0.00 5.92
1346 1802 0.111089 GACGAGTGCTTGTTTCGCAG 60.111 55.000 0.00 0.00 38.19 5.18
1362 1818 2.931969 TCGCAGCTCAATTCTGTGTATG 59.068 45.455 6.20 0.00 41.42 2.39
1363 1819 2.674852 CGCAGCTCAATTCTGTGTATGT 59.325 45.455 0.00 0.00 37.31 2.29
1380 1836 4.803613 TGTATGTAAGCACTGTAGATTGCG 59.196 41.667 0.00 0.00 43.87 4.85
1434 1893 6.560253 ATTTAGGTATTGTGAATCATCCGC 57.440 37.500 0.00 0.00 0.00 5.54
1452 1911 4.320456 CGGGTGCTGTGGCTCTGT 62.320 66.667 0.00 0.00 39.59 3.41
1453 1912 2.359230 GGGTGCTGTGGCTCTGTC 60.359 66.667 0.00 0.00 39.59 3.51
1560 2019 3.737266 TGTAAGTCCGCTTTAGTTCAACG 59.263 43.478 0.00 0.00 36.22 4.10
1665 2124 4.733077 TTTAGGGACCTGGTCAAAATCA 57.267 40.909 26.94 4.63 33.68 2.57
1699 2159 4.039124 GGGGTTCTTGATTGTTGATGTTGT 59.961 41.667 0.00 0.00 0.00 3.32
1703 2163 6.742718 GGTTCTTGATTGTTGATGTTGTATCG 59.257 38.462 0.00 0.00 0.00 2.92
1730 2190 9.846248 GCAATTGAACTCTGTTCAATACTTATT 57.154 29.630 27.82 15.75 45.36 1.40
1828 2288 5.243207 TCGCTTCAGATATTCATGCATCAT 58.757 37.500 0.00 0.00 0.00 2.45
1880 2340 1.084370 GTCCGACTCCGATTTGGCAG 61.084 60.000 0.00 0.00 38.22 4.85
1982 2443 7.459486 GCGAGCATTACTATATGATTTTCAGG 58.541 38.462 0.00 0.00 0.00 3.86
2009 2470 7.625682 AGTCTGAAATAGGATCTACCCTTTCTT 59.374 37.037 0.00 0.00 39.49 2.52
2020 2481 9.244292 GGATCTACCCTTTCTTTCTTGTATTTT 57.756 33.333 0.00 0.00 0.00 1.82
2067 2528 5.163530 TGTCCATCATTGGTTAATCATGTGC 60.164 40.000 0.00 0.00 44.06 4.57
2068 2529 4.954826 TCCATCATTGGTTAATCATGTGCA 59.045 37.500 0.00 0.00 44.06 4.57
2162 2623 1.679977 CACCTTCTGTGGCCCATGG 60.680 63.158 4.14 4.14 41.52 3.66
2180 2641 1.603739 GGGTGCCCTTTGTCCTGTC 60.604 63.158 0.00 0.00 0.00 3.51
2236 2699 3.686726 CAGAAATTTGTAGGCTTCTCGCT 59.313 43.478 0.00 0.00 39.13 4.93
2263 2726 3.548770 ACCCTGAGCATGTGTTATCATG 58.451 45.455 0.00 2.78 45.37 3.07
2403 3206 3.064207 TCCTAAAAGTGTGACGTGCATC 58.936 45.455 0.00 0.00 0.00 3.91
2542 3346 1.471119 ATCAGCAGGAATGCCTTGTG 58.529 50.000 0.00 0.00 43.90 3.33
2623 3427 6.245408 ACATTTGGCTAGTTCTTCATGGTTA 58.755 36.000 0.00 0.00 0.00 2.85
2752 3556 8.223330 ACCAAGATGGATCTATCAATTTTAGCT 58.777 33.333 19.91 0.00 40.96 3.32
2806 3610 7.439056 GCCAAAAATGTTGAGGACCATATTATG 59.561 37.037 0.00 0.00 0.00 1.90
3070 3875 9.243637 GTGAGTTCATTTATCTTGTAGCTAGAG 57.756 37.037 0.00 0.00 0.00 2.43
3081 3886 6.407202 TCTTGTAGCTAGAGAATTTGGTTCC 58.593 40.000 0.00 0.00 37.56 3.62
3082 3887 5.099042 TGTAGCTAGAGAATTTGGTTCCC 57.901 43.478 0.00 0.00 37.56 3.97
3083 3888 4.534500 TGTAGCTAGAGAATTTGGTTCCCA 59.466 41.667 0.00 0.00 37.56 4.37
3178 3983 3.532102 AGGATTCTCACCAACCCTAGTT 58.468 45.455 0.00 0.00 36.33 2.24
3267 4072 8.482852 AATATTTTATGTTATGCTCCTGCCTT 57.517 30.769 0.00 0.00 38.71 4.35
3370 4175 3.672808 ACAAGGCTTCATTGAGAGACAG 58.327 45.455 0.00 0.00 0.00 3.51
3593 4399 2.519771 ATGCCCACACAACTGATGAT 57.480 45.000 0.00 0.00 0.00 2.45
3901 4766 5.193679 GGAGGGAGTTAACATATTGCAGTT 58.806 41.667 8.61 0.00 0.00 3.16
3985 4850 2.222027 GAGGCTAAGTTTGTGCAGTGT 58.778 47.619 0.00 0.00 0.00 3.55
4143 5008 7.817418 AATTGATAAGGTGTGTTACAGTTGT 57.183 32.000 0.00 0.00 0.00 3.32
4219 5084 7.921214 TCTCTAACTTGTATTATGTAGTGCTGC 59.079 37.037 0.00 0.00 0.00 5.25
4227 5092 5.663795 ATTATGTAGTGCTGCAATTCTCG 57.336 39.130 8.25 0.00 0.00 4.04
4580 5451 8.531982 TGTATCTTCTACTCAGTGCATTTACTT 58.468 33.333 0.00 0.00 0.00 2.24
4741 5615 3.187227 ACAGTGCTCTTCGCTTATGTTTG 59.813 43.478 0.00 0.00 40.11 2.93
4921 5795 8.400947 CAAATAGTGCTATTGAGTAAAGCATGT 58.599 33.333 5.34 0.00 46.99 3.21
4959 5833 4.082081 GGGAATTCATGCACTGTTGATGAA 60.082 41.667 7.93 11.61 39.71 2.57
5123 5997 4.072839 TCCTAGACGTGAGCAGTATATGG 58.927 47.826 0.00 0.00 0.00 2.74
5142 6016 8.978472 GTATATGGCATATTTCCAGTACCTCTA 58.022 37.037 23.96 0.00 36.98 2.43
5230 6105 3.866449 GCTTCGTCTTCCATTCTCAGGTT 60.866 47.826 0.00 0.00 0.00 3.50
5256 6131 6.170506 ACGATACCTGAAATTCTTGCAGTTA 58.829 36.000 0.00 0.00 0.00 2.24
5356 6231 0.754957 GCAGAGAGCTAGAGGCCTCA 60.755 60.000 33.90 18.60 43.05 3.86
5453 6328 0.190815 ATTGTTGGGAGCCTTTGGGT 59.809 50.000 0.00 0.00 35.46 4.51
5483 6358 7.786030 TGTTATCTCTTATCTGAAGTTCCCAG 58.214 38.462 0.00 0.00 0.00 4.45
5494 6369 3.716872 TGAAGTTCCCAGTTTCTCCTCTT 59.283 43.478 0.00 0.00 0.00 2.85
5500 6375 1.557371 CCAGTTTCTCCTCTTCCCCTC 59.443 57.143 0.00 0.00 0.00 4.30
5511 6386 3.321968 CCTCTTCCCCTCTTTGGTTTTTG 59.678 47.826 0.00 0.00 0.00 2.44
5567 6443 5.574891 TTCTGCTGTGTGTACAAAAATGT 57.425 34.783 0.00 0.00 36.14 2.71
5610 6486 5.841810 TGTTATCTTTTGCTGGGAAGTTTG 58.158 37.500 0.00 0.00 0.00 2.93
5616 6492 2.380064 TGCTGGGAAGTTTGTCCATT 57.620 45.000 0.00 0.00 39.70 3.16
5677 6553 4.216708 TGGATTTTGTTTACCCGTTTCCT 58.783 39.130 0.00 0.00 0.00 3.36
5678 6554 4.278919 TGGATTTTGTTTACCCGTTTCCTC 59.721 41.667 0.00 0.00 0.00 3.71
5679 6555 3.967203 TTTTGTTTACCCGTTTCCTCG 57.033 42.857 0.00 0.00 0.00 4.63
5680 6556 1.228533 TTGTTTACCCGTTTCCTCGC 58.771 50.000 0.00 0.00 0.00 5.03
5681 6557 0.106335 TGTTTACCCGTTTCCTCGCA 59.894 50.000 0.00 0.00 0.00 5.10
5682 6558 1.270947 TGTTTACCCGTTTCCTCGCAT 60.271 47.619 0.00 0.00 0.00 4.73
5683 6559 1.129811 GTTTACCCGTTTCCTCGCATG 59.870 52.381 0.00 0.00 0.00 4.06
5684 6560 0.609151 TTACCCGTTTCCTCGCATGA 59.391 50.000 0.00 0.00 0.00 3.07
5685 6561 0.828022 TACCCGTTTCCTCGCATGAT 59.172 50.000 0.00 0.00 0.00 2.45
5687 6563 0.657840 CCCGTTTCCTCGCATGATTC 59.342 55.000 0.00 0.00 0.00 2.52
5750 6649 2.910688 AACGTCTCGCATTATGGGAT 57.089 45.000 12.27 0.00 38.67 3.85
5815 6714 9.990868 AATTAGGGTTACAAAATATTCCTCTGT 57.009 29.630 0.00 0.00 0.00 3.41
5831 6730 1.816835 TCTGTTAGGTCGAGTCGCATT 59.183 47.619 7.92 0.00 0.00 3.56
5844 6743 6.035758 GTCGAGTCGCATTTTATCTTTACCTT 59.964 38.462 7.92 0.00 0.00 3.50
5847 6746 8.548721 CGAGTCGCATTTTATCTTTACCTTAAT 58.451 33.333 0.00 0.00 0.00 1.40
5861 6761 7.786464 TCTTTACCTTAATATTAGGACGGAGGT 59.214 37.037 15.34 15.34 39.44 3.85
5865 6765 7.278135 ACCTTAATATTAGGACGGAGGTTTTC 58.722 38.462 14.32 0.00 36.58 2.29
5885 6785 6.672266 TTTCATAGTTCTCCTTCTGTCACT 57.328 37.500 0.00 0.00 0.00 3.41
5889 6789 7.175797 TCATAGTTCTCCTTCTGTCACTCTTA 58.824 38.462 0.00 0.00 0.00 2.10
5893 6793 8.006298 AGTTCTCCTTCTGTCACTCTTATATG 57.994 38.462 0.00 0.00 0.00 1.78
5895 6795 8.904834 GTTCTCCTTCTGTCACTCTTATATGTA 58.095 37.037 0.00 0.00 0.00 2.29
5896 6796 9.647918 TTCTCCTTCTGTCACTCTTATATGTAT 57.352 33.333 0.00 0.00 0.00 2.29
5897 6797 9.647918 TCTCCTTCTGTCACTCTTATATGTATT 57.352 33.333 0.00 0.00 0.00 1.89
5898 6798 9.689976 CTCCTTCTGTCACTCTTATATGTATTG 57.310 37.037 0.00 0.00 0.00 1.90
5899 6799 9.421399 TCCTTCTGTCACTCTTATATGTATTGA 57.579 33.333 0.00 0.00 0.00 2.57
5951 6851 9.857656 TGATGGCTGAGATTTAAAAATAGATCT 57.142 29.630 0.00 0.00 0.00 2.75
5969 6869 4.762289 ATCTACAAGATCAAGGGACACC 57.238 45.455 0.00 0.00 25.75 4.16
5970 6870 2.838202 TCTACAAGATCAAGGGACACCC 59.162 50.000 0.00 0.00 45.90 4.61
5971 6871 5.068254 ATCTACAAGATCAAGGGACACCCA 61.068 45.833 9.59 0.00 36.80 4.51
5972 6872 6.352907 ATCTACAAGATCAAGGGACACCCAT 61.353 44.000 9.59 0.00 36.80 4.00
5973 6873 8.328436 ATCTACAAGATCAAGGGACACCCATG 62.328 46.154 9.59 7.61 43.08 3.66
5992 6892 6.699575 CCATGTCTGGGTTTTCCTATTTAG 57.300 41.667 0.00 0.00 39.04 1.85
5993 6893 6.423182 CCATGTCTGGGTTTTCCTATTTAGA 58.577 40.000 0.00 0.00 39.04 2.10
5994 6894 7.062957 CCATGTCTGGGTTTTCCTATTTAGAT 58.937 38.462 0.00 0.00 39.04 1.98
5995 6895 7.229506 CCATGTCTGGGTTTTCCTATTTAGATC 59.770 40.741 0.00 0.00 39.04 2.75
5996 6896 6.346096 TGTCTGGGTTTTCCTATTTAGATCG 58.654 40.000 0.00 0.00 40.46 3.69
5997 6897 5.758784 GTCTGGGTTTTCCTATTTAGATCGG 59.241 44.000 0.00 0.00 40.46 4.18
6035 6935 8.711457 AGTTGTTTTATTACGCGTAAGTATTGT 58.289 29.630 32.39 19.27 41.68 2.71
6084 6984 9.638176 TCTTACTCCTAACTTTTATATCCGTCT 57.362 33.333 0.00 0.00 0.00 4.18
6085 6985 9.680315 CTTACTCCTAACTTTTATATCCGTCTG 57.320 37.037 0.00 0.00 0.00 3.51
6086 6986 7.893124 ACTCCTAACTTTTATATCCGTCTGA 57.107 36.000 0.00 0.00 0.00 3.27
6087 6987 8.302515 ACTCCTAACTTTTATATCCGTCTGAA 57.697 34.615 0.00 0.00 0.00 3.02
6088 6988 8.925338 ACTCCTAACTTTTATATCCGTCTGAAT 58.075 33.333 0.00 0.00 0.00 2.57
6089 6989 9.413048 CTCCTAACTTTTATATCCGTCTGAATC 57.587 37.037 0.00 0.00 0.00 2.52
6090 6990 8.920174 TCCTAACTTTTATATCCGTCTGAATCA 58.080 33.333 0.00 0.00 0.00 2.57
6091 6991 9.712305 CCTAACTTTTATATCCGTCTGAATCAT 57.288 33.333 0.00 0.00 0.00 2.45
6097 6997 9.435688 TTTTATATCCGTCTGAATCATATGTGG 57.564 33.333 1.90 0.00 0.00 4.17
6098 6998 3.111853 TCCGTCTGAATCATATGTGGC 57.888 47.619 1.90 0.00 0.00 5.01
6099 6999 2.433970 TCCGTCTGAATCATATGTGGCA 59.566 45.455 1.90 0.00 0.00 4.92
6100 7000 2.804527 CCGTCTGAATCATATGTGGCAG 59.195 50.000 1.90 8.51 0.00 4.85
6101 7001 3.461061 CGTCTGAATCATATGTGGCAGT 58.539 45.455 15.65 0.00 0.00 4.40
6102 7002 3.246936 CGTCTGAATCATATGTGGCAGTG 59.753 47.826 15.65 0.00 0.00 3.66
6103 7003 3.562973 GTCTGAATCATATGTGGCAGTGG 59.437 47.826 15.65 0.27 0.00 4.00
6104 7004 2.292569 CTGAATCATATGTGGCAGTGGC 59.707 50.000 10.30 10.30 40.13 5.01
6114 7014 4.247781 GCAGTGGCCATGCTATGT 57.752 55.556 24.36 0.00 40.59 2.29
6115 7015 2.496942 GCAGTGGCCATGCTATGTT 58.503 52.632 24.36 0.00 40.59 2.71
6116 7016 0.383231 GCAGTGGCCATGCTATGTTC 59.617 55.000 24.36 4.76 40.59 3.18
6117 7017 2.020694 GCAGTGGCCATGCTATGTTCT 61.021 52.381 24.36 6.86 40.59 3.01
6118 7018 1.674441 CAGTGGCCATGCTATGTTCTG 59.326 52.381 9.72 3.97 0.00 3.02
6119 7019 1.283029 AGTGGCCATGCTATGTTCTGT 59.717 47.619 9.72 0.00 0.00 3.41
6120 7020 2.505407 AGTGGCCATGCTATGTTCTGTA 59.495 45.455 9.72 0.00 0.00 2.74
6121 7021 2.614057 GTGGCCATGCTATGTTCTGTAC 59.386 50.000 9.72 0.00 0.00 2.90
6122 7022 2.505407 TGGCCATGCTATGTTCTGTACT 59.495 45.455 0.00 0.00 0.00 2.73
6123 7023 3.134458 GGCCATGCTATGTTCTGTACTC 58.866 50.000 0.00 0.00 0.00 2.59
6124 7024 3.134458 GCCATGCTATGTTCTGTACTCC 58.866 50.000 0.00 0.00 0.00 3.85
6125 7025 3.733337 CCATGCTATGTTCTGTACTCCC 58.267 50.000 0.00 0.00 0.00 4.30
6126 7026 3.389329 CCATGCTATGTTCTGTACTCCCT 59.611 47.826 0.00 0.00 0.00 4.20
6127 7027 4.502259 CCATGCTATGTTCTGTACTCCCTC 60.502 50.000 0.00 0.00 0.00 4.30
6128 7028 3.031736 TGCTATGTTCTGTACTCCCTCC 58.968 50.000 0.00 0.00 0.00 4.30
6129 7029 3.301274 GCTATGTTCTGTACTCCCTCCT 58.699 50.000 0.00 0.00 0.00 3.69
6130 7030 3.707102 GCTATGTTCTGTACTCCCTCCTT 59.293 47.826 0.00 0.00 0.00 3.36
6131 7031 4.202172 GCTATGTTCTGTACTCCCTCCTTC 60.202 50.000 0.00 0.00 0.00 3.46
6132 7032 2.537143 TGTTCTGTACTCCCTCCTTCC 58.463 52.381 0.00 0.00 0.00 3.46
6133 7033 2.158219 TGTTCTGTACTCCCTCCTTCCA 60.158 50.000 0.00 0.00 0.00 3.53
6134 7034 3.108376 GTTCTGTACTCCCTCCTTCCAT 58.892 50.000 0.00 0.00 0.00 3.41
6135 7035 3.033659 TCTGTACTCCCTCCTTCCATC 57.966 52.381 0.00 0.00 0.00 3.51
6136 7036 2.587777 TCTGTACTCCCTCCTTCCATCT 59.412 50.000 0.00 0.00 0.00 2.90
6137 7037 3.792114 TCTGTACTCCCTCCTTCCATCTA 59.208 47.826 0.00 0.00 0.00 1.98
6138 7038 4.420552 TCTGTACTCCCTCCTTCCATCTAT 59.579 45.833 0.00 0.00 0.00 1.98
6139 7039 5.615692 TCTGTACTCCCTCCTTCCATCTATA 59.384 44.000 0.00 0.00 0.00 1.31
6140 7040 5.893500 TGTACTCCCTCCTTCCATCTATAG 58.106 45.833 0.00 0.00 0.00 1.31
6141 7041 4.412060 ACTCCCTCCTTCCATCTATAGG 57.588 50.000 0.00 0.00 0.00 2.57
6142 7042 3.735442 ACTCCCTCCTTCCATCTATAGGT 59.265 47.826 0.00 0.00 0.00 3.08
6143 7043 4.202738 ACTCCCTCCTTCCATCTATAGGTC 60.203 50.000 0.00 0.00 0.00 3.85
6144 7044 3.997856 TCCCTCCTTCCATCTATAGGTCT 59.002 47.826 0.00 0.00 0.00 3.85
6145 7045 5.178614 TCCCTCCTTCCATCTATAGGTCTA 58.821 45.833 0.00 0.00 0.00 2.59
6146 7046 5.620021 TCCCTCCTTCCATCTATAGGTCTAA 59.380 44.000 0.00 0.00 0.00 2.10
6147 7047 6.280649 TCCCTCCTTCCATCTATAGGTCTAAT 59.719 42.308 0.00 0.00 0.00 1.73
6148 7048 6.382570 CCCTCCTTCCATCTATAGGTCTAATG 59.617 46.154 0.00 0.00 0.00 1.90
6149 7049 6.127196 CCTCCTTCCATCTATAGGTCTAATGC 60.127 46.154 0.00 0.00 0.00 3.56
6150 7050 5.419155 TCCTTCCATCTATAGGTCTAATGCG 59.581 44.000 0.00 0.00 0.00 4.73
6151 7051 5.394663 CCTTCCATCTATAGGTCTAATGCGG 60.395 48.000 0.00 0.00 0.00 5.69
6152 7052 4.673968 TCCATCTATAGGTCTAATGCGGT 58.326 43.478 0.00 0.00 0.00 5.68
6153 7053 5.084519 TCCATCTATAGGTCTAATGCGGTT 58.915 41.667 0.00 0.00 0.00 4.44
6154 7054 5.542635 TCCATCTATAGGTCTAATGCGGTTT 59.457 40.000 0.00 0.00 0.00 3.27
6155 7055 6.042781 TCCATCTATAGGTCTAATGCGGTTTT 59.957 38.462 0.00 0.00 0.00 2.43
6156 7056 6.710744 CCATCTATAGGTCTAATGCGGTTTTT 59.289 38.462 0.00 0.00 0.00 1.94
6157 7057 7.876068 CCATCTATAGGTCTAATGCGGTTTTTA 59.124 37.037 0.00 0.00 0.00 1.52
6158 7058 9.268268 CATCTATAGGTCTAATGCGGTTTTTAA 57.732 33.333 0.00 0.00 0.00 1.52
6159 7059 8.882415 TCTATAGGTCTAATGCGGTTTTTAAG 57.118 34.615 0.00 0.00 0.00 1.85
6160 7060 8.698210 TCTATAGGTCTAATGCGGTTTTTAAGA 58.302 33.333 0.00 0.00 0.00 2.10
6161 7061 5.874895 AGGTCTAATGCGGTTTTTAAGAC 57.125 39.130 0.00 0.00 0.00 3.01
6162 7062 4.698780 AGGTCTAATGCGGTTTTTAAGACC 59.301 41.667 9.99 9.99 42.39 3.85
6172 7072 4.928601 GGTTTTTAAGACCGCTTTTGACT 58.071 39.130 0.00 0.00 35.56 3.41
6173 7073 6.063640 GGTTTTTAAGACCGCTTTTGACTA 57.936 37.500 0.00 0.00 35.56 2.59
6174 7074 5.911280 GGTTTTTAAGACCGCTTTTGACTAC 59.089 40.000 0.00 0.00 35.56 2.73
6175 7075 6.458615 GGTTTTTAAGACCGCTTTTGACTACA 60.459 38.462 0.00 0.00 35.56 2.74
6176 7076 6.680874 TTTTAAGACCGCTTTTGACTACAA 57.319 33.333 0.00 0.00 35.56 2.41
6177 7077 5.662211 TTAAGACCGCTTTTGACTACAAC 57.338 39.130 0.00 0.00 35.63 3.32
6178 7078 3.188159 AGACCGCTTTTGACTACAACA 57.812 42.857 0.00 0.00 35.63 3.33
6179 7079 3.537580 AGACCGCTTTTGACTACAACAA 58.462 40.909 0.00 0.00 35.63 2.83
6180 7080 3.311596 AGACCGCTTTTGACTACAACAAC 59.688 43.478 0.00 0.00 35.63 3.32
6181 7081 3.011119 ACCGCTTTTGACTACAACAACA 58.989 40.909 0.00 0.00 35.63 3.33
6182 7082 3.440872 ACCGCTTTTGACTACAACAACAA 59.559 39.130 0.00 0.00 35.63 2.83
6183 7083 4.082679 ACCGCTTTTGACTACAACAACAAA 60.083 37.500 0.00 0.00 35.63 2.83
6184 7084 4.859798 CCGCTTTTGACTACAACAACAAAA 59.140 37.500 0.00 0.00 39.02 2.44
6185 7085 5.346281 CCGCTTTTGACTACAACAACAAAAA 59.654 36.000 0.00 0.00 40.16 1.94
6186 7086 6.230654 CGCTTTTGACTACAACAACAAAAAC 58.769 36.000 0.00 0.00 40.16 2.43
6187 7087 6.129062 CGCTTTTGACTACAACAACAAAAACA 60.129 34.615 0.00 0.00 40.16 2.83
6188 7088 7.567771 CGCTTTTGACTACAACAACAAAAACAA 60.568 33.333 0.00 0.00 40.16 2.83
6189 7089 7.529185 GCTTTTGACTACAACAACAAAAACAAC 59.471 33.333 0.00 0.00 40.16 3.32
6190 7090 8.420374 TTTTGACTACAACAACAAAAACAACA 57.580 26.923 0.00 0.00 38.61 3.33
6191 7091 8.420374 TTTGACTACAACAACAAAAACAACAA 57.580 26.923 0.00 0.00 35.63 2.83
6192 7092 8.420374 TTGACTACAACAACAAAAACAACAAA 57.580 26.923 0.00 0.00 0.00 2.83
6193 7093 8.066668 TGACTACAACAACAAAAACAACAAAG 57.933 30.769 0.00 0.00 0.00 2.77
6194 7094 6.883129 ACTACAACAACAAAAACAACAAAGC 58.117 32.000 0.00 0.00 0.00 3.51
6195 7095 5.102020 ACAACAACAAAAACAACAAAGCC 57.898 34.783 0.00 0.00 0.00 4.35
6196 7096 4.819088 ACAACAACAAAAACAACAAAGCCT 59.181 33.333 0.00 0.00 0.00 4.58
6197 7097 5.298026 ACAACAACAAAAACAACAAAGCCTT 59.702 32.000 0.00 0.00 0.00 4.35
6198 7098 6.183360 ACAACAACAAAAACAACAAAGCCTTT 60.183 30.769 0.00 0.00 0.00 3.11
6199 7099 7.012421 ACAACAACAAAAACAACAAAGCCTTTA 59.988 29.630 0.00 0.00 0.00 1.85
6200 7100 7.127917 ACAACAAAAACAACAAAGCCTTTAG 57.872 32.000 0.00 0.00 0.00 1.85
6201 7101 6.708502 ACAACAAAAACAACAAAGCCTTTAGT 59.291 30.769 0.00 0.00 0.00 2.24
6202 7102 7.227711 ACAACAAAAACAACAAAGCCTTTAGTT 59.772 29.630 0.00 0.00 0.00 2.24
6203 7103 7.359262 ACAAAAACAACAAAGCCTTTAGTTC 57.641 32.000 0.00 0.00 0.00 3.01
6204 7104 6.370442 ACAAAAACAACAAAGCCTTTAGTTCC 59.630 34.615 0.00 0.00 0.00 3.62
6205 7105 5.669164 AAACAACAAAGCCTTTAGTTCCA 57.331 34.783 0.00 0.00 0.00 3.53
6206 7106 5.669164 AACAACAAAGCCTTTAGTTCCAA 57.331 34.783 0.00 0.00 0.00 3.53
6207 7107 5.669164 ACAACAAAGCCTTTAGTTCCAAA 57.331 34.783 0.00 0.00 0.00 3.28
6208 7108 5.416083 ACAACAAAGCCTTTAGTTCCAAAC 58.584 37.500 0.00 0.00 0.00 2.93
6209 7109 5.046950 ACAACAAAGCCTTTAGTTCCAAACA 60.047 36.000 0.00 0.00 0.00 2.83
6210 7110 5.669164 ACAAAGCCTTTAGTTCCAAACAA 57.331 34.783 0.00 0.00 0.00 2.83
6211 7111 5.660460 ACAAAGCCTTTAGTTCCAAACAAG 58.340 37.500 0.00 0.00 0.00 3.16
6212 7112 5.186992 ACAAAGCCTTTAGTTCCAAACAAGT 59.813 36.000 0.00 0.00 0.00 3.16
6213 7113 5.932619 AAGCCTTTAGTTCCAAACAAGTT 57.067 34.783 0.00 0.00 0.00 2.66
6214 7114 5.262588 AGCCTTTAGTTCCAAACAAGTTG 57.737 39.130 0.00 0.00 36.94 3.16
6226 7126 4.843728 CAAACAAGTTGGGATAGGCTAGA 58.156 43.478 7.96 0.00 33.18 2.43
6227 7127 4.762289 AACAAGTTGGGATAGGCTAGAG 57.238 45.455 7.96 0.00 0.00 2.43
6228 7128 3.041946 ACAAGTTGGGATAGGCTAGAGG 58.958 50.000 7.96 0.00 0.00 3.69
6229 7129 3.041946 CAAGTTGGGATAGGCTAGAGGT 58.958 50.000 0.00 0.00 0.00 3.85
6230 7130 2.683768 AGTTGGGATAGGCTAGAGGTG 58.316 52.381 0.00 0.00 0.00 4.00
6231 7131 2.247635 AGTTGGGATAGGCTAGAGGTGA 59.752 50.000 0.00 0.00 0.00 4.02
6232 7132 3.039011 GTTGGGATAGGCTAGAGGTGAA 58.961 50.000 0.00 0.00 0.00 3.18
6233 7133 3.414759 TGGGATAGGCTAGAGGTGAAA 57.585 47.619 0.00 0.00 0.00 2.69
6234 7134 3.039011 TGGGATAGGCTAGAGGTGAAAC 58.961 50.000 0.00 0.00 0.00 2.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.696097 CCCGGAGATTCGTGGGGATT 61.696 60.000 0.73 0.00 40.51 3.01
2 3 2.140792 CCCGGAGATTCGTGGGGAT 61.141 63.158 0.73 0.00 40.51 3.85
3 4 2.227494 TACCCGGAGATTCGTGGGGA 62.227 60.000 0.73 4.30 46.38 4.81
4 5 1.332144 TTACCCGGAGATTCGTGGGG 61.332 60.000 0.73 10.36 46.38 4.96
18 19 5.105917 ACGTCCACATCATTTGATTTTACCC 60.106 40.000 0.00 0.00 31.21 3.69
19 20 5.949735 ACGTCCACATCATTTGATTTTACC 58.050 37.500 0.00 0.00 31.21 2.85
37 38 6.423001 AGTTAACAAAGTCACATCTAACGTCC 59.577 38.462 8.61 0.00 0.00 4.79
38 39 7.381678 AGAGTTAACAAAGTCACATCTAACGTC 59.618 37.037 8.61 0.00 0.00 4.34
68 69 5.102596 ACATTATAGGGGTAGGGCTAACT 57.897 43.478 0.00 0.00 0.00 2.24
69 70 5.781818 TGTACATTATAGGGGTAGGGCTAAC 59.218 44.000 0.00 0.00 0.00 2.34
70 71 5.979959 TGTACATTATAGGGGTAGGGCTAA 58.020 41.667 0.00 0.00 0.00 3.09
71 72 5.620259 TGTACATTATAGGGGTAGGGCTA 57.380 43.478 0.00 0.00 0.00 3.93
73 74 4.348754 TGTTGTACATTATAGGGGTAGGGC 59.651 45.833 0.00 0.00 0.00 5.19
74 75 6.472887 CATGTTGTACATTATAGGGGTAGGG 58.527 44.000 0.00 0.00 36.53 3.53
75 76 6.271391 TCCATGTTGTACATTATAGGGGTAGG 59.729 42.308 0.00 0.00 36.53 3.18
76 77 7.016268 ACTCCATGTTGTACATTATAGGGGTAG 59.984 40.741 0.00 0.00 36.53 3.18
77 78 6.847567 ACTCCATGTTGTACATTATAGGGGTA 59.152 38.462 0.00 0.00 36.53 3.69
78 79 5.670361 ACTCCATGTTGTACATTATAGGGGT 59.330 40.000 0.00 0.00 36.53 4.95
80 81 7.732025 TGTACTCCATGTTGTACATTATAGGG 58.268 38.462 18.30 0.00 42.49 3.53
101 115 5.710099 TCCTTTTTCTTCATGTCCCATGTAC 59.290 40.000 4.30 0.00 0.00 2.90
107 121 4.911390 TCTCTCCTTTTTCTTCATGTCCC 58.089 43.478 0.00 0.00 0.00 4.46
161 182 7.913789 TCACTTATTTTACATACTGTCTGGGT 58.086 34.615 0.00 0.00 0.00 4.51
162 183 8.964476 ATCACTTATTTTACATACTGTCTGGG 57.036 34.615 0.00 0.00 0.00 4.45
198 219 6.758416 GCAGTGGAAACTTTTGAAAAGAGATT 59.242 34.615 23.14 14.22 0.00 2.40
307 335 2.159142 CCGGAATACTTTACGCCTGTCT 60.159 50.000 0.00 0.00 37.88 3.41
312 340 0.465287 TCCCCGGAATACTTTACGCC 59.535 55.000 0.73 0.00 37.88 5.68
324 352 1.072648 CCAACTGTTTAGTTCCCCGGA 59.927 52.381 0.73 0.00 45.12 5.14
334 362 1.302993 GAGGCCGCCCAACTGTTTA 60.303 57.895 5.55 0.00 0.00 2.01
335 363 2.597510 GAGGCCGCCCAACTGTTT 60.598 61.111 5.55 0.00 0.00 2.83
336 364 4.660938 GGAGGCCGCCCAACTGTT 62.661 66.667 15.92 0.00 0.00 3.16
396 428 4.383861 CACGCAGCAGAGGAGCCA 62.384 66.667 0.00 0.00 34.23 4.75
530 562 0.387565 CGTTTTGTTTCCCTGGGGTG 59.612 55.000 14.00 0.00 36.47 4.61
531 563 0.259356 TCGTTTTGTTTCCCTGGGGT 59.741 50.000 14.00 0.00 36.47 4.95
533 565 0.309612 CGTCGTTTTGTTTCCCTGGG 59.690 55.000 6.33 6.33 0.00 4.45
654 696 3.039526 AGGAGGGGGAGAGGGAGG 61.040 72.222 0.00 0.00 0.00 4.30
660 702 1.233369 GGATTCGAGGAGGGGGAGA 59.767 63.158 0.00 0.00 0.00 3.71
797 1247 0.399376 TATAGCAAAGGGGGAGCGGA 60.399 55.000 0.00 0.00 0.00 5.54
808 1258 2.700897 GGGCTCTGGACTCTATAGCAAA 59.299 50.000 0.00 0.00 34.85 3.68
814 1264 1.152440 CCCGGGCTCTGGACTCTAT 60.152 63.158 8.08 0.00 0.00 1.98
815 1265 2.279073 CCCGGGCTCTGGACTCTA 59.721 66.667 8.08 0.00 0.00 2.43
848 1304 4.351938 TGAACCCGCGTCGTGAGG 62.352 66.667 7.51 9.38 37.27 3.86
849 1305 2.805353 CTGAACCCGCGTCGTGAG 60.805 66.667 7.51 0.00 0.00 3.51
867 1323 4.731612 AGTCAGTCAGCCGCAGCG 62.732 66.667 8.18 8.18 46.67 5.18
868 1324 3.117171 CAGTCAGTCAGCCGCAGC 61.117 66.667 0.00 0.00 40.32 5.25
869 1325 2.433838 CCAGTCAGTCAGCCGCAG 60.434 66.667 0.00 0.00 0.00 5.18
870 1326 4.007644 CCCAGTCAGTCAGCCGCA 62.008 66.667 0.00 0.00 0.00 5.69
871 1327 4.008933 ACCCAGTCAGTCAGCCGC 62.009 66.667 0.00 0.00 0.00 6.53
872 1328 2.047844 CACCCAGTCAGTCAGCCG 60.048 66.667 0.00 0.00 0.00 5.52
873 1329 2.348998 CCACCCAGTCAGTCAGCC 59.651 66.667 0.00 0.00 0.00 4.85
878 1334 2.507854 CGACCACCACCCAGTCAGT 61.508 63.158 0.00 0.00 0.00 3.41
896 1352 4.508128 TTCGATCCTGCGCGGGTC 62.508 66.667 33.59 26.40 39.72 4.46
897 1353 4.514577 CTTCGATCCTGCGCGGGT 62.515 66.667 33.59 21.34 0.00 5.28
898 1354 4.207281 TCTTCGATCCTGCGCGGG 62.207 66.667 30.18 30.18 0.00 6.13
899 1355 2.956964 GTCTTCGATCCTGCGCGG 60.957 66.667 9.96 9.96 0.00 6.46
900 1356 2.956964 GGTCTTCGATCCTGCGCG 60.957 66.667 0.00 0.00 0.00 6.86
903 1359 1.227002 GACCGGTCTTCGATCCTGC 60.227 63.158 27.64 0.00 42.43 4.85
904 1360 1.064296 CGACCGGTCTTCGATCCTG 59.936 63.158 30.92 9.40 42.43 3.86
905 1361 2.119655 CCGACCGGTCTTCGATCCT 61.120 63.158 30.92 0.00 42.43 3.24
906 1362 2.412112 CCGACCGGTCTTCGATCC 59.588 66.667 30.92 4.19 42.43 3.36
907 1363 2.278661 GCCGACCGGTCTTCGATC 60.279 66.667 30.92 11.05 42.43 3.69
908 1364 3.834799 GGCCGACCGGTCTTCGAT 61.835 66.667 30.92 0.00 42.43 3.59
1148 1604 5.276348 CCACGAAATTGAAGCAGAAAACAAC 60.276 40.000 0.00 0.00 0.00 3.32
1164 1620 2.360726 GTTCCCCCGCCACGAAAT 60.361 61.111 0.00 0.00 0.00 2.17
1165 1621 3.562232 AGTTCCCCCGCCACGAAA 61.562 61.111 0.00 0.00 0.00 3.46
1171 1627 2.359975 CAGTTCAGTTCCCCCGCC 60.360 66.667 0.00 0.00 0.00 6.13
1195 1651 1.244019 AATCCAACCCAGTTCAGCGC 61.244 55.000 0.00 0.00 0.00 5.92
1197 1653 2.229784 CAGAAATCCAACCCAGTTCAGC 59.770 50.000 0.00 0.00 0.00 4.26
1198 1654 3.254166 CACAGAAATCCAACCCAGTTCAG 59.746 47.826 0.00 0.00 0.00 3.02
1262 1718 4.180057 CGCTGCTTATCTTCTTGAAGAGT 58.820 43.478 16.66 8.96 31.48 3.24
1346 1802 5.352569 AGTGCTTACATACACAGAATTGAGC 59.647 40.000 0.00 0.00 39.30 4.26
1362 1818 5.041287 TGATACGCAATCTACAGTGCTTAC 58.959 41.667 0.00 0.00 38.66 2.34
1363 1819 5.041287 GTGATACGCAATCTACAGTGCTTA 58.959 41.667 0.00 0.00 38.66 3.09
1380 1836 7.068348 TCCTCAGAACATAACCTACAGTGATAC 59.932 40.741 0.00 0.00 0.00 2.24
1444 1903 2.839486 AAATCAGAACGACAGAGCCA 57.161 45.000 0.00 0.00 0.00 4.75
1446 1905 4.549107 GCGAATAAATCAGAACGACAGAGC 60.549 45.833 0.00 0.00 0.00 4.09
1447 1906 4.562789 TGCGAATAAATCAGAACGACAGAG 59.437 41.667 0.00 0.00 0.00 3.35
1448 1907 4.326278 GTGCGAATAAATCAGAACGACAGA 59.674 41.667 0.00 0.00 0.00 3.41
1449 1908 4.327357 AGTGCGAATAAATCAGAACGACAG 59.673 41.667 0.00 0.00 0.00 3.51
1450 1909 4.091365 CAGTGCGAATAAATCAGAACGACA 59.909 41.667 0.00 0.00 0.00 4.35
1451 1910 4.091509 ACAGTGCGAATAAATCAGAACGAC 59.908 41.667 0.00 0.00 0.00 4.34
1452 1911 4.091365 CACAGTGCGAATAAATCAGAACGA 59.909 41.667 0.00 0.00 0.00 3.85
1453 1912 4.326205 CACAGTGCGAATAAATCAGAACG 58.674 43.478 0.00 0.00 0.00 3.95
1560 2019 3.193157 CAGTACACAGCAATCAACTGC 57.807 47.619 0.00 0.00 42.97 4.40
1627 2086 4.114794 CCTAAAAATAGCAAGTGCATGGC 58.885 43.478 6.00 0.00 45.16 4.40
1665 2124 4.934797 TCAAGAACCCCTGAATCTCATT 57.065 40.909 0.00 0.00 0.00 2.57
1699 2159 4.574892 TGAACAGAGTTCAATTGCCGATA 58.425 39.130 9.91 0.00 0.00 2.92
1703 2163 6.259550 AGTATTGAACAGAGTTCAATTGCC 57.740 37.500 31.04 22.11 44.16 4.52
1828 2288 6.755206 ACGCATAAATGGCTGAGTAATACTA 58.245 36.000 0.00 0.00 0.00 1.82
1875 2335 2.511218 AGCTCTATCCAAAATCCTGCCA 59.489 45.455 0.00 0.00 0.00 4.92
1957 2418 7.331934 TCCTGAAAATCATATAGTAATGCTCGC 59.668 37.037 0.00 0.00 0.00 5.03
1982 2443 6.987403 AAGGGTAGATCCTATTTCAGACTC 57.013 41.667 0.00 0.00 35.80 3.36
1998 2459 7.021790 GCGAAAATACAAGAAAGAAAGGGTAG 58.978 38.462 0.00 0.00 0.00 3.18
2009 2470 9.607285 GAAAATTGTCTAGCGAAAATACAAGAA 57.393 29.630 0.00 0.00 33.90 2.52
2067 2528 6.016943 GGTAGCTAACAGGTAGACATAGACTG 60.017 46.154 3.20 0.00 35.40 3.51
2068 2529 6.063404 GGTAGCTAACAGGTAGACATAGACT 58.937 44.000 3.20 0.00 30.50 3.24
2180 2641 3.340814 AGGAAGCATGTGGAGTAACAG 57.659 47.619 0.00 0.00 32.52 3.16
2236 2699 3.788227 ACACATGCTCAGGGTAAAAGA 57.212 42.857 0.00 0.00 0.00 2.52
2403 3206 1.442769 AACTAACTCTGGTGCATGCG 58.557 50.000 14.09 0.00 0.00 4.73
2490 3294 2.664402 ACAGGGCAAATCAGTCAAGT 57.336 45.000 0.00 0.00 0.00 3.16
2542 3346 6.564873 GCACACTGAGTTTTGACAAGAGATAC 60.565 42.308 0.00 0.00 0.00 2.24
2623 3427 3.600388 GCATTTAGCACCAGTGTCTAGT 58.400 45.455 0.00 0.00 44.79 2.57
2671 3475 8.584157 ACAGCCATGTAATTTGAATAAACTTCA 58.416 29.630 0.00 0.00 38.09 3.02
2689 3493 2.768253 TACAGAGGAACACAGCCATG 57.232 50.000 0.00 0.00 0.00 3.66
2806 3610 7.857885 GCAGCTGTTCCTTTTACATATAATGAC 59.142 37.037 16.64 0.00 0.00 3.06
2823 3627 4.542662 AATGATATTCACGCAGCTGTTC 57.457 40.909 16.64 0.00 0.00 3.18
3081 3886 9.458727 AGAGTCTGGATATAATTGCATATTTGG 57.541 33.333 0.00 0.00 0.00 3.28
3087 3892 9.887629 CAATCTAGAGTCTGGATATAATTGCAT 57.112 33.333 18.34 0.00 30.53 3.96
3088 3893 8.874156 ACAATCTAGAGTCTGGATATAATTGCA 58.126 33.333 18.34 0.00 30.53 4.08
3267 4072 4.383444 CCAGCTCATAAAGAGGATGTGACA 60.383 45.833 0.00 0.00 44.86 3.58
3370 4175 7.736893 ACACTGGAAATAGTATCAATACCTCC 58.263 38.462 0.00 0.56 33.79 4.30
3401 4206 0.537188 AACATGCTAGACCTGACGGG 59.463 55.000 0.00 0.00 41.89 5.28
3461 4266 8.321353 TGTATCAGAGACAATACAGGAACATTT 58.679 33.333 0.00 0.00 34.33 2.32
3593 4399 0.550147 AGAAAGCCTGGGCCTTCCTA 60.550 55.000 16.55 0.00 41.14 2.94
3854 4663 9.196139 TCCGTCCCAAAATATAAGATCATTTTT 57.804 29.630 0.00 0.00 33.23 1.94
3901 4766 4.018506 TCCTGAATCTCAACAATAAGGCCA 60.019 41.667 5.01 0.00 0.00 5.36
3985 4850 2.571212 AGCTCAACCAAACGATTGACA 58.429 42.857 7.03 0.00 38.94 3.58
4143 5008 6.325028 TCAAGGGTTAACAAAACAATCATGGA 59.675 34.615 8.10 0.00 0.00 3.41
4219 5084 9.254133 ACTGTCATATACAAGAATCGAGAATTG 57.746 33.333 0.00 0.00 37.74 2.32
4227 5092 8.668510 ATGTGGAACTGTCATATACAAGAATC 57.331 34.615 0.00 0.00 37.74 2.52
4272 5137 4.819630 AGAAAGGAAAACAGTATTCGTGCA 59.180 37.500 0.00 0.00 0.00 4.57
4276 5141 9.516314 AAAAGAAAGAAAGGAAAACAGTATTCG 57.484 29.630 0.00 0.00 0.00 3.34
4580 5451 4.150980 CACGAGCATCAGTAAACCGTTAAA 59.849 41.667 0.00 0.00 33.17 1.52
4918 5792 4.046286 TCCCAAATACTTGAGCCAACAT 57.954 40.909 0.00 0.00 34.14 2.71
4921 5795 5.083122 TGAATTCCCAAATACTTGAGCCAA 58.917 37.500 2.27 0.00 34.14 4.52
4959 5833 6.991531 ACATGTTTGAAATAATTTGGTGCAGT 59.008 30.769 0.00 0.00 0.00 4.40
5085 5959 5.926542 CGTCTAGGAATCTGTCTTGACAAAA 59.073 40.000 4.95 0.00 36.20 2.44
5092 5966 3.129638 GCTCACGTCTAGGAATCTGTCTT 59.870 47.826 0.00 0.00 0.00 3.01
5123 5997 8.910351 AAAGAATAGAGGTACTGGAAATATGC 57.090 34.615 0.00 0.00 41.55 3.14
5154 6029 4.095483 CGATGGCAAAGTTAGCTTGAGAAT 59.905 41.667 0.00 0.00 34.71 2.40
5230 6105 4.574892 TGCAAGAATTTCAGGTATCGTCA 58.425 39.130 0.00 0.00 0.00 4.35
5256 6131 5.419542 TCTTCTGATGTTCCGATTCGAAAT 58.580 37.500 7.83 0.00 0.00 2.17
5356 6231 1.649321 TCAACATCCTCCAGAGCACT 58.351 50.000 0.00 0.00 0.00 4.40
5483 6358 3.560239 CCAAAGAGGGGAAGAGGAGAAAC 60.560 52.174 0.00 0.00 0.00 2.78
5494 6369 1.062505 AGCCAAAAACCAAAGAGGGGA 60.063 47.619 0.00 0.00 43.89 4.81
5500 6375 3.130633 GCTAACCAGCCAAAAACCAAAG 58.869 45.455 0.00 0.00 42.37 2.77
5511 6386 0.530870 GACCTGATCGCTAACCAGCC 60.531 60.000 0.00 0.00 45.64 4.85
5567 6443 5.590530 ACAAACAATGTCAAGGCTGTTTA 57.409 34.783 0.00 0.00 37.96 2.01
5616 6492 7.109501 TCCACTTTACTATAGATTGCAAAGCA 58.890 34.615 1.71 0.00 32.26 3.91
5677 6553 7.442062 ACATCTTACATTATGTGAATCATGCGA 59.558 33.333 8.26 0.00 37.91 5.10
5678 6554 7.578852 ACATCTTACATTATGTGAATCATGCG 58.421 34.615 8.26 0.00 37.91 4.73
5679 6555 9.740239 AAACATCTTACATTATGTGAATCATGC 57.260 29.630 8.26 0.00 36.47 4.06
5739 6638 1.707427 ACTCCCTCCATCCCATAATGC 59.293 52.381 0.00 0.00 0.00 3.56
5750 6649 2.777692 GGGTTGATCAATACTCCCTCCA 59.222 50.000 19.82 0.00 32.89 3.86
5815 6714 5.258456 AGATAAAATGCGACTCGACCTAA 57.742 39.130 1.63 0.00 0.00 2.69
5844 6743 9.151177 ACTATGAAAACCTCCGTCCTAATATTA 57.849 33.333 0.00 0.00 0.00 0.98
5847 6746 7.343833 AGAACTATGAAAACCTCCGTCCTAATA 59.656 37.037 0.00 0.00 0.00 0.98
5848 6747 5.952347 ACTATGAAAACCTCCGTCCTAAT 57.048 39.130 0.00 0.00 0.00 1.73
5850 6749 5.021458 AGAACTATGAAAACCTCCGTCCTA 58.979 41.667 0.00 0.00 0.00 2.94
5857 6757 6.468543 ACAGAAGGAGAACTATGAAAACCTC 58.531 40.000 0.00 0.00 0.00 3.85
5861 6761 7.015682 AGAGTGACAGAAGGAGAACTATGAAAA 59.984 37.037 0.00 0.00 0.00 2.29
5865 6765 5.913137 AGAGTGACAGAAGGAGAACTATG 57.087 43.478 0.00 0.00 0.00 2.23
5915 6815 9.631257 TTAAATCTCAGCCATCAATCTTTATGA 57.369 29.630 0.00 0.00 0.00 2.15
5946 6846 6.632297 GGGTGTCCCTTGATCTTGTAGATCT 61.632 48.000 15.49 0.00 44.59 2.75
5947 6847 4.443598 GGGTGTCCCTTGATCTTGTAGATC 60.444 50.000 9.25 9.25 44.57 2.75
5948 6848 3.456277 GGGTGTCCCTTGATCTTGTAGAT 59.544 47.826 0.00 0.00 41.34 1.98
5949 6849 2.838202 GGGTGTCCCTTGATCTTGTAGA 59.162 50.000 0.00 0.00 41.34 2.59
5950 6850 2.571653 TGGGTGTCCCTTGATCTTGTAG 59.428 50.000 6.38 0.00 45.70 2.74
5951 6851 2.626785 TGGGTGTCCCTTGATCTTGTA 58.373 47.619 6.38 0.00 45.70 2.41
5952 6852 1.444933 TGGGTGTCCCTTGATCTTGT 58.555 50.000 6.38 0.00 45.70 3.16
5953 6853 2.814805 ATGGGTGTCCCTTGATCTTG 57.185 50.000 6.38 0.00 45.70 3.02
5970 6870 7.041780 CGATCTAAATAGGAAAACCCAGACATG 60.042 40.741 0.00 0.00 37.41 3.21
5971 6871 6.992715 CGATCTAAATAGGAAAACCCAGACAT 59.007 38.462 0.00 0.00 37.41 3.06
5972 6872 6.346096 CGATCTAAATAGGAAAACCCAGACA 58.654 40.000 0.00 0.00 37.41 3.41
5973 6873 5.758784 CCGATCTAAATAGGAAAACCCAGAC 59.241 44.000 0.00 0.00 37.41 3.51
5974 6874 5.686650 GCCGATCTAAATAGGAAAACCCAGA 60.687 44.000 0.00 0.00 37.41 3.86
5975 6875 4.515567 GCCGATCTAAATAGGAAAACCCAG 59.484 45.833 0.00 0.00 37.41 4.45
5976 6876 4.165372 AGCCGATCTAAATAGGAAAACCCA 59.835 41.667 0.00 0.00 37.41 4.51
5977 6877 4.715713 AGCCGATCTAAATAGGAAAACCC 58.284 43.478 0.00 0.00 29.54 4.11
5978 6878 5.050295 CGAAGCCGATCTAAATAGGAAAACC 60.050 44.000 0.00 0.00 38.22 3.27
5979 6879 5.751990 TCGAAGCCGATCTAAATAGGAAAAC 59.248 40.000 0.00 0.00 40.30 2.43
5980 6880 5.909477 TCGAAGCCGATCTAAATAGGAAAA 58.091 37.500 0.00 0.00 40.30 2.29
5981 6881 5.301045 TCTCGAAGCCGATCTAAATAGGAAA 59.699 40.000 0.00 0.00 44.62 3.13
5982 6882 4.825634 TCTCGAAGCCGATCTAAATAGGAA 59.174 41.667 0.00 0.00 44.62 3.36
5983 6883 4.395625 TCTCGAAGCCGATCTAAATAGGA 58.604 43.478 0.00 0.00 44.62 2.94
5984 6884 4.768130 TCTCGAAGCCGATCTAAATAGG 57.232 45.455 0.00 0.00 44.62 2.57
5985 6885 6.382608 TCAATCTCGAAGCCGATCTAAATAG 58.617 40.000 0.00 0.00 44.62 1.73
5986 6886 6.016192 ACTCAATCTCGAAGCCGATCTAAATA 60.016 38.462 0.00 0.00 44.62 1.40
5987 6887 5.201713 TCAATCTCGAAGCCGATCTAAAT 57.798 39.130 0.00 0.00 44.62 1.40
5988 6888 4.098044 ACTCAATCTCGAAGCCGATCTAAA 59.902 41.667 0.00 0.00 44.62 1.85
5989 6889 3.632604 ACTCAATCTCGAAGCCGATCTAA 59.367 43.478 0.00 0.00 44.62 2.10
5990 6890 3.215151 ACTCAATCTCGAAGCCGATCTA 58.785 45.455 0.00 0.00 44.62 1.98
5991 6891 2.028130 ACTCAATCTCGAAGCCGATCT 58.972 47.619 0.00 0.00 44.62 2.75
5992 6892 2.500509 ACTCAATCTCGAAGCCGATC 57.499 50.000 0.00 0.00 44.62 3.69
5993 6893 2.093973 ACAACTCAATCTCGAAGCCGAT 60.094 45.455 0.00 0.00 44.62 4.18
5994 6894 1.272490 ACAACTCAATCTCGAAGCCGA 59.728 47.619 0.00 0.00 43.35 5.54
5995 6895 1.714794 ACAACTCAATCTCGAAGCCG 58.285 50.000 0.00 0.00 37.07 5.52
5996 6896 4.489679 AAAACAACTCAATCTCGAAGCC 57.510 40.909 0.00 0.00 0.00 4.35
5997 6897 7.422746 CGTAATAAAACAACTCAATCTCGAAGC 59.577 37.037 0.00 0.00 0.00 3.86
6035 6935 6.379133 AGAATATTACCTCAAGTGTCCGTGTA 59.621 38.462 0.00 0.00 0.00 2.90
6077 6977 3.071457 TGCCACATATGATTCAGACGGAT 59.929 43.478 10.38 0.00 0.00 4.18
6078 6978 2.433970 TGCCACATATGATTCAGACGGA 59.566 45.455 10.38 0.00 0.00 4.69
6079 6979 2.804527 CTGCCACATATGATTCAGACGG 59.195 50.000 10.38 0.00 0.00 4.79
6080 6980 3.246936 CACTGCCACATATGATTCAGACG 59.753 47.826 20.81 12.22 0.00 4.18
6081 6981 3.562973 CCACTGCCACATATGATTCAGAC 59.437 47.826 20.81 3.18 0.00 3.51
6082 6982 3.812262 CCACTGCCACATATGATTCAGA 58.188 45.455 20.81 0.00 0.00 3.27
6083 6983 2.292569 GCCACTGCCACATATGATTCAG 59.707 50.000 10.38 13.94 0.00 3.02
6084 6984 2.300433 GCCACTGCCACATATGATTCA 58.700 47.619 10.38 2.83 0.00 2.57
6097 6997 0.383231 GAACATAGCATGGCCACTGC 59.617 55.000 24.29 24.29 39.97 4.40
6098 6998 1.674441 CAGAACATAGCATGGCCACTG 59.326 52.381 8.16 9.35 33.60 3.66
6099 6999 1.283029 ACAGAACATAGCATGGCCACT 59.717 47.619 8.16 3.79 33.60 4.00
6100 7000 1.755179 ACAGAACATAGCATGGCCAC 58.245 50.000 8.16 0.00 33.60 5.01
6101 7001 2.505407 AGTACAGAACATAGCATGGCCA 59.495 45.455 8.56 8.56 33.60 5.36
6102 7002 3.134458 GAGTACAGAACATAGCATGGCC 58.866 50.000 0.00 0.00 33.60 5.36
6103 7003 3.134458 GGAGTACAGAACATAGCATGGC 58.866 50.000 0.00 0.00 33.60 4.40
6104 7004 3.389329 AGGGAGTACAGAACATAGCATGG 59.611 47.826 0.00 0.00 33.60 3.66
6105 7005 4.502259 GGAGGGAGTACAGAACATAGCATG 60.502 50.000 0.00 0.00 0.00 4.06
6106 7006 3.643792 GGAGGGAGTACAGAACATAGCAT 59.356 47.826 0.00 0.00 0.00 3.79
6107 7007 3.031736 GGAGGGAGTACAGAACATAGCA 58.968 50.000 0.00 0.00 0.00 3.49
6108 7008 3.301274 AGGAGGGAGTACAGAACATAGC 58.699 50.000 0.00 0.00 0.00 2.97
6109 7009 4.342665 GGAAGGAGGGAGTACAGAACATAG 59.657 50.000 0.00 0.00 0.00 2.23
6110 7010 4.264668 TGGAAGGAGGGAGTACAGAACATA 60.265 45.833 0.00 0.00 0.00 2.29
6111 7011 3.108376 GGAAGGAGGGAGTACAGAACAT 58.892 50.000 0.00 0.00 0.00 2.71
6112 7012 2.158219 TGGAAGGAGGGAGTACAGAACA 60.158 50.000 0.00 0.00 0.00 3.18
6113 7013 2.537143 TGGAAGGAGGGAGTACAGAAC 58.463 52.381 0.00 0.00 0.00 3.01
6114 7014 3.012959 AGATGGAAGGAGGGAGTACAGAA 59.987 47.826 0.00 0.00 0.00 3.02
6115 7015 2.587777 AGATGGAAGGAGGGAGTACAGA 59.412 50.000 0.00 0.00 0.00 3.41
6116 7016 3.039252 AGATGGAAGGAGGGAGTACAG 57.961 52.381 0.00 0.00 0.00 2.74
6117 7017 4.834406 ATAGATGGAAGGAGGGAGTACA 57.166 45.455 0.00 0.00 0.00 2.90
6118 7018 5.222379 ACCTATAGATGGAAGGAGGGAGTAC 60.222 48.000 0.00 0.00 34.34 2.73
6119 7019 4.926987 ACCTATAGATGGAAGGAGGGAGTA 59.073 45.833 0.00 0.00 34.34 2.59
6120 7020 3.735442 ACCTATAGATGGAAGGAGGGAGT 59.265 47.826 0.00 0.00 34.34 3.85
6121 7021 4.045334 AGACCTATAGATGGAAGGAGGGAG 59.955 50.000 0.00 0.00 34.34 4.30
6122 7022 3.997856 AGACCTATAGATGGAAGGAGGGA 59.002 47.826 0.00 0.00 34.34 4.20
6123 7023 4.412060 AGACCTATAGATGGAAGGAGGG 57.588 50.000 0.00 0.00 34.34 4.30
6124 7024 6.127196 GCATTAGACCTATAGATGGAAGGAGG 60.127 46.154 0.00 0.00 34.34 4.30
6125 7025 6.405286 CGCATTAGACCTATAGATGGAAGGAG 60.405 46.154 0.00 0.00 34.34 3.69
6126 7026 5.419155 CGCATTAGACCTATAGATGGAAGGA 59.581 44.000 0.00 0.00 34.34 3.36
6127 7027 5.394663 CCGCATTAGACCTATAGATGGAAGG 60.395 48.000 0.00 0.00 36.42 3.46
6128 7028 5.186021 ACCGCATTAGACCTATAGATGGAAG 59.814 44.000 0.00 0.00 0.00 3.46
6129 7029 5.084519 ACCGCATTAGACCTATAGATGGAA 58.915 41.667 0.00 0.00 0.00 3.53
6130 7030 4.673968 ACCGCATTAGACCTATAGATGGA 58.326 43.478 0.00 0.00 0.00 3.41
6131 7031 5.407407 AACCGCATTAGACCTATAGATGG 57.593 43.478 0.00 0.00 0.00 3.51
6132 7032 7.730364 AAAAACCGCATTAGACCTATAGATG 57.270 36.000 0.00 0.00 0.00 2.90
6133 7033 9.490379 CTTAAAAACCGCATTAGACCTATAGAT 57.510 33.333 0.00 0.00 0.00 1.98
6134 7034 8.698210 TCTTAAAAACCGCATTAGACCTATAGA 58.302 33.333 0.00 0.00 0.00 1.98
6135 7035 8.762426 GTCTTAAAAACCGCATTAGACCTATAG 58.238 37.037 0.00 0.00 0.00 1.31
6136 7036 7.712205 GGTCTTAAAAACCGCATTAGACCTATA 59.288 37.037 0.00 0.00 39.88 1.31
6137 7037 6.541278 GGTCTTAAAAACCGCATTAGACCTAT 59.459 38.462 0.00 0.00 39.88 2.57
6138 7038 5.876460 GGTCTTAAAAACCGCATTAGACCTA 59.124 40.000 0.00 0.00 39.88 3.08
6139 7039 4.698780 GGTCTTAAAAACCGCATTAGACCT 59.301 41.667 0.00 0.00 39.88 3.85
6140 7040 4.978186 GGTCTTAAAAACCGCATTAGACC 58.022 43.478 0.00 0.00 36.88 3.85
6150 7050 4.928601 AGTCAAAAGCGGTCTTAAAAACC 58.071 39.130 0.00 0.00 31.02 3.27
6151 7051 6.488817 TGTAGTCAAAAGCGGTCTTAAAAAC 58.511 36.000 0.00 0.00 31.02 2.43
6152 7052 6.680874 TGTAGTCAAAAGCGGTCTTAAAAA 57.319 33.333 0.00 0.00 31.02 1.94
6153 7053 6.093771 TGTTGTAGTCAAAAGCGGTCTTAAAA 59.906 34.615 0.00 0.00 35.20 1.52
6154 7054 5.585445 TGTTGTAGTCAAAAGCGGTCTTAAA 59.415 36.000 0.00 0.00 35.20 1.52
6155 7055 5.117584 TGTTGTAGTCAAAAGCGGTCTTAA 58.882 37.500 0.00 0.00 35.20 1.85
6156 7056 4.695396 TGTTGTAGTCAAAAGCGGTCTTA 58.305 39.130 0.00 0.00 35.20 2.10
6157 7057 3.537580 TGTTGTAGTCAAAAGCGGTCTT 58.462 40.909 0.00 0.00 35.20 3.01
6158 7058 3.188159 TGTTGTAGTCAAAAGCGGTCT 57.812 42.857 0.00 0.00 35.20 3.85
6159 7059 3.064271 TGTTGTTGTAGTCAAAAGCGGTC 59.936 43.478 0.00 0.00 35.20 4.79
6160 7060 3.011119 TGTTGTTGTAGTCAAAAGCGGT 58.989 40.909 0.00 0.00 35.20 5.68
6161 7061 3.684103 TGTTGTTGTAGTCAAAAGCGG 57.316 42.857 0.00 0.00 35.20 5.52
6162 7062 6.129062 TGTTTTTGTTGTTGTAGTCAAAAGCG 60.129 34.615 0.00 0.00 40.82 4.68
6163 7063 7.111353 TGTTTTTGTTGTTGTAGTCAAAAGC 57.889 32.000 0.00 0.00 39.66 3.51
6164 7064 8.543774 TGTTGTTTTTGTTGTTGTAGTCAAAAG 58.456 29.630 0.00 0.00 39.66 2.27
6165 7065 8.420374 TGTTGTTTTTGTTGTTGTAGTCAAAA 57.580 26.923 0.00 0.00 37.78 2.44
6166 7066 8.420374 TTGTTGTTTTTGTTGTTGTAGTCAAA 57.580 26.923 0.00 0.00 35.20 2.69
6167 7067 8.420374 TTTGTTGTTTTTGTTGTTGTAGTCAA 57.580 26.923 0.00 0.00 0.00 3.18
6168 7068 7.306866 GCTTTGTTGTTTTTGTTGTTGTAGTCA 60.307 33.333 0.00 0.00 0.00 3.41
6169 7069 7.007117 GCTTTGTTGTTTTTGTTGTTGTAGTC 58.993 34.615 0.00 0.00 0.00 2.59
6170 7070 6.073494 GGCTTTGTTGTTTTTGTTGTTGTAGT 60.073 34.615 0.00 0.00 0.00 2.73
6171 7071 6.147000 AGGCTTTGTTGTTTTTGTTGTTGTAG 59.853 34.615 0.00 0.00 0.00 2.74
6172 7072 5.992217 AGGCTTTGTTGTTTTTGTTGTTGTA 59.008 32.000 0.00 0.00 0.00 2.41
6173 7073 4.819088 AGGCTTTGTTGTTTTTGTTGTTGT 59.181 33.333 0.00 0.00 0.00 3.32
6174 7074 5.355467 AGGCTTTGTTGTTTTTGTTGTTG 57.645 34.783 0.00 0.00 0.00 3.33
6175 7075 6.384258 AAAGGCTTTGTTGTTTTTGTTGTT 57.616 29.167 12.53 0.00 0.00 2.83
6176 7076 6.708502 ACTAAAGGCTTTGTTGTTTTTGTTGT 59.291 30.769 22.32 0.00 0.00 3.32
6177 7077 7.127917 ACTAAAGGCTTTGTTGTTTTTGTTG 57.872 32.000 22.32 0.00 0.00 3.33
6178 7078 7.094975 GGAACTAAAGGCTTTGTTGTTTTTGTT 60.095 33.333 22.32 6.77 32.37 2.83
6179 7079 6.370442 GGAACTAAAGGCTTTGTTGTTTTTGT 59.630 34.615 22.32 3.67 0.00 2.83
6180 7080 6.370166 TGGAACTAAAGGCTTTGTTGTTTTTG 59.630 34.615 22.32 0.00 0.00 2.44
6181 7081 6.468543 TGGAACTAAAGGCTTTGTTGTTTTT 58.531 32.000 22.32 4.79 0.00 1.94
6182 7082 6.043854 TGGAACTAAAGGCTTTGTTGTTTT 57.956 33.333 22.32 6.09 0.00 2.43
6183 7083 5.669164 TGGAACTAAAGGCTTTGTTGTTT 57.331 34.783 22.32 7.73 0.00 2.83
6184 7084 5.669164 TTGGAACTAAAGGCTTTGTTGTT 57.331 34.783 22.32 20.82 0.00 2.83
6185 7085 5.046950 TGTTTGGAACTAAAGGCTTTGTTGT 60.047 36.000 22.32 14.44 0.00 3.32
6186 7086 5.415221 TGTTTGGAACTAAAGGCTTTGTTG 58.585 37.500 22.32 13.85 0.00 3.33
6187 7087 5.669164 TGTTTGGAACTAAAGGCTTTGTT 57.331 34.783 22.32 21.06 0.00 2.83
6188 7088 5.186992 ACTTGTTTGGAACTAAAGGCTTTGT 59.813 36.000 22.32 14.58 0.00 2.83
6189 7089 5.660460 ACTTGTTTGGAACTAAAGGCTTTG 58.340 37.500 22.32 13.97 0.00 2.77
6190 7090 5.932619 ACTTGTTTGGAACTAAAGGCTTT 57.067 34.783 17.76 17.76 0.00 3.51
6191 7091 5.660460 CAACTTGTTTGGAACTAAAGGCTT 58.340 37.500 0.00 0.00 0.00 4.35
6192 7092 5.262588 CAACTTGTTTGGAACTAAAGGCT 57.737 39.130 0.00 0.00 0.00 4.58
6204 7104 4.843728 TCTAGCCTATCCCAACTTGTTTG 58.156 43.478 0.00 0.00 34.63 2.93
6205 7105 4.080299 CCTCTAGCCTATCCCAACTTGTTT 60.080 45.833 0.00 0.00 0.00 2.83
6206 7106 3.456277 CCTCTAGCCTATCCCAACTTGTT 59.544 47.826 0.00 0.00 0.00 2.83
6207 7107 3.041946 CCTCTAGCCTATCCCAACTTGT 58.958 50.000 0.00 0.00 0.00 3.16
6208 7108 3.041946 ACCTCTAGCCTATCCCAACTTG 58.958 50.000 0.00 0.00 0.00 3.16
6209 7109 3.041946 CACCTCTAGCCTATCCCAACTT 58.958 50.000 0.00 0.00 0.00 2.66
6210 7110 2.247635 TCACCTCTAGCCTATCCCAACT 59.752 50.000 0.00 0.00 0.00 3.16
6211 7111 2.679082 TCACCTCTAGCCTATCCCAAC 58.321 52.381 0.00 0.00 0.00 3.77
6212 7112 3.414759 TTCACCTCTAGCCTATCCCAA 57.585 47.619 0.00 0.00 0.00 4.12
6213 7113 3.039011 GTTTCACCTCTAGCCTATCCCA 58.961 50.000 0.00 0.00 0.00 4.37
6214 7114 2.369203 GGTTTCACCTCTAGCCTATCCC 59.631 54.545 0.00 0.00 34.73 3.85
6215 7115 2.369203 GGGTTTCACCTCTAGCCTATCC 59.631 54.545 0.00 0.00 38.64 2.59
6216 7116 3.039011 TGGGTTTCACCTCTAGCCTATC 58.961 50.000 0.00 0.00 38.64 2.08
6217 7117 3.130734 TGGGTTTCACCTCTAGCCTAT 57.869 47.619 0.00 0.00 38.64 2.57
6218 7118 2.634639 TGGGTTTCACCTCTAGCCTA 57.365 50.000 0.00 0.00 38.64 3.93
6219 7119 1.972588 ATGGGTTTCACCTCTAGCCT 58.027 50.000 0.00 0.00 38.64 4.58
6220 7120 3.454812 TCTTATGGGTTTCACCTCTAGCC 59.545 47.826 0.00 0.00 38.64 3.93
6221 7121 4.755266 TCTTATGGGTTTCACCTCTAGC 57.245 45.455 0.00 0.00 38.64 3.42


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.