Multiple sequence alignment - TraesCS5A01G060300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G060300 chr5A 100.000 3781 0 0 1 3781 60529270 60525490 0.000000e+00 6983.0
1 TraesCS5A01G060300 chr5A 92.857 42 1 2 3280 3320 624730270 624730230 4.080000e-05 60.2
2 TraesCS5A01G060300 chr5D 96.484 2588 77 8 665 3246 70639948 70637369 0.000000e+00 4263.0
3 TraesCS5A01G060300 chr5D 95.930 344 12 2 1 344 70640929 70640588 1.190000e-154 556.0
4 TraesCS5A01G060300 chr5D 92.833 293 11 3 341 632 70640485 70640202 2.100000e-112 416.0
5 TraesCS5A01G060300 chr5B 96.049 1645 54 4 648 2288 75906967 75905330 0.000000e+00 2667.0
6 TraesCS5A01G060300 chr5B 93.341 901 49 7 2371 3268 75902909 75902017 0.000000e+00 1321.0
7 TraesCS5A01G060300 chr5B 96.082 485 18 1 74 557 75907554 75907070 0.000000e+00 789.0
8 TraesCS5A01G060300 chr5B 97.842 139 3 0 2238 2376 75905334 75905196 1.360000e-59 241.0
9 TraesCS5A01G060300 chr5B 97.015 67 2 0 582 648 75907076 75907010 3.090000e-21 113.0
10 TraesCS5A01G060300 chr3B 76.026 463 69 20 3353 3781 61180368 61180822 6.400000e-48 202.0
11 TraesCS5A01G060300 chr3B 83.000 200 32 1 3353 3550 704110775 704110974 3.000000e-41 180.0
12 TraesCS5A01G060300 chr3B 95.000 40 2 0 3273 3312 791760654 791760693 3.150000e-06 63.9
13 TraesCS5A01G060300 chr3B 87.273 55 2 5 3275 3326 737611097 737611149 1.470000e-04 58.4
14 TraesCS5A01G060300 chr4A 92.857 56 4 0 3275 3330 111096086 111096031 8.700000e-12 82.4
15 TraesCS5A01G060300 chr4A 97.368 38 0 1 708 744 295974254 295974291 3.150000e-06 63.9
16 TraesCS5A01G060300 chr4A 95.000 40 2 0 705 744 576160158 576160197 3.150000e-06 63.9
17 TraesCS5A01G060300 chr2A 91.228 57 5 0 3675 3731 429389876 429389932 1.130000e-10 78.7
18 TraesCS5A01G060300 chr6B 91.667 48 2 2 3279 3325 37955818 37955772 8.770000e-07 65.8
19 TraesCS5A01G060300 chr7B 89.796 49 5 0 3277 3325 581397861 581397909 3.150000e-06 63.9
20 TraesCS5A01G060300 chr7A 97.368 38 0 1 708 744 268858799 268858762 3.150000e-06 63.9
21 TraesCS5A01G060300 chr4B 97.368 38 0 1 3275 3311 564627036 564626999 3.150000e-06 63.9
22 TraesCS5A01G060300 chr4B 100.000 34 0 0 3278 3311 670071169 670071136 3.150000e-06 63.9
23 TraesCS5A01G060300 chr6D 88.679 53 2 4 695 744 260030304 260030253 1.130000e-05 62.1
24 TraesCS5A01G060300 chr6D 94.737 38 2 0 707 744 282079208 282079171 4.080000e-05 60.2
25 TraesCS5A01G060300 chr3D 97.297 37 0 1 709 744 528613329 528613365 1.130000e-05 62.1
26 TraesCS5A01G060300 chr2D 93.023 43 1 2 704 744 204140728 204140770 1.130000e-05 62.1
27 TraesCS5A01G060300 chr6A 96.875 32 1 0 3280 3311 167056308 167056339 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G060300 chr5A 60525490 60529270 3780 True 6983.0 6983 100.000000 1 3781 1 chr5A.!!$R1 3780
1 TraesCS5A01G060300 chr5D 70637369 70640929 3560 True 1745.0 4263 95.082333 1 3246 3 chr5D.!!$R1 3245
2 TraesCS5A01G060300 chr5B 75902017 75907554 5537 True 1026.2 2667 96.065800 74 3268 5 chr5B.!!$R1 3194

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
678 1008 1.543358 TGCGCCACTGAATTGCATTAA 59.457 42.857 4.18 0.0 0.0 1.40 F
1588 1919 1.009829 CCTTATGTGTCCTTCGCTGC 58.990 55.000 0.00 0.0 0.0 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2325 2708 2.552599 TCTTACACATGGCGGTTTGA 57.447 45.0 0.00 0.00 0.00 2.69 R
3502 6182 0.111061 AGGTGAAGCATGTTCAGCCA 59.889 50.0 24.02 4.12 45.18 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 2.429930 CCCGGCTTCTCAACACCA 59.570 61.111 0.00 0.00 0.00 4.17
229 230 3.740044 TTTTGTTCGAGATTGATCGGC 57.260 42.857 0.00 0.00 42.93 5.54
245 246 2.711542 TCGGCTCCTTCTTCCATTTTC 58.288 47.619 0.00 0.00 0.00 2.29
256 257 8.339247 TCCTTCTTCCATTTTCCATCTTAGAAT 58.661 33.333 0.00 0.00 0.00 2.40
581 690 9.851686 ATAGTATGCACTTTCATGGAGATAAAA 57.148 29.630 0.00 0.00 36.14 1.52
678 1008 1.543358 TGCGCCACTGAATTGCATTAA 59.457 42.857 4.18 0.00 0.00 1.40
685 1015 5.067674 GCCACTGAATTGCATTAATCTGGTA 59.932 40.000 0.00 0.00 0.00 3.25
829 1159 4.273318 GGGTTTGTGATCTGAGGCTATTT 58.727 43.478 0.00 0.00 0.00 1.40
914 1245 9.695526 TTATTGGAATGAAAAACTGTTCTGATG 57.304 29.630 0.00 0.00 0.00 3.07
1033 1364 5.045942 TGCCTTATGTGTAGAAAGGACATCA 60.046 40.000 4.56 0.00 42.01 3.07
1112 1443 4.811908 ACCACTTTTACTGCAAAAACGTT 58.188 34.783 0.00 0.00 35.71 3.99
1147 1478 1.042229 TGCATTTGCTTTCTGGCAGT 58.958 45.000 15.27 0.00 43.39 4.40
1199 1530 1.889545 ACAGTGAGCTGAGAAAAGCC 58.110 50.000 0.00 0.00 45.28 4.35
1220 1551 4.361451 CACACATGATTTTAGTGGAGCC 57.639 45.455 0.00 0.00 37.58 4.70
1227 1558 3.255642 TGATTTTAGTGGAGCCAACAAGC 59.744 43.478 0.00 0.00 0.00 4.01
1289 1620 3.885297 CCCTAAGTCAATGGCCACATAAG 59.115 47.826 8.16 0.00 35.94 1.73
1293 1624 3.164268 AGTCAATGGCCACATAAGCAAA 58.836 40.909 8.16 0.00 35.94 3.68
1358 1689 2.685850 TAGGGAAGGCTTAAAGACGC 57.314 50.000 0.00 0.00 0.00 5.19
1383 1714 1.394618 TTGTTGCGGTAAAGGTGCTT 58.605 45.000 0.00 0.00 0.00 3.91
1409 1740 1.551430 CCATTCAAAGCAAGGCATCCA 59.449 47.619 0.00 0.00 0.00 3.41
1588 1919 1.009829 CCTTATGTGTCCTTCGCTGC 58.990 55.000 0.00 0.00 0.00 5.25
2431 5106 2.861462 TTTTTGGCTGTTTCTGACCG 57.139 45.000 0.00 0.00 0.00 4.79
2827 5502 9.859427 CAAATCCTGTTGTTGTACATTATCATT 57.141 29.630 0.00 0.00 0.00 2.57
3017 5695 6.243811 TGCCGAAATAACTAAATTTGACGT 57.756 33.333 0.00 0.00 0.00 4.34
3141 5820 1.657181 GTCTTTGTGGGCGTTTGCG 60.657 57.895 0.00 0.00 44.10 4.85
3168 5847 0.748729 TCTTCCCGGCAAACGTTTGT 60.749 50.000 34.39 4.68 42.24 2.83
3182 5861 4.398549 ACGTTTGTCCATTAACATGTCG 57.601 40.909 0.00 0.00 0.00 4.35
3183 5862 3.187637 ACGTTTGTCCATTAACATGTCGG 59.812 43.478 0.00 0.00 0.00 4.79
3184 5863 3.433957 CGTTTGTCCATTAACATGTCGGA 59.566 43.478 0.00 0.09 0.00 4.55
3185 5864 4.435518 CGTTTGTCCATTAACATGTCGGAG 60.436 45.833 0.00 0.00 0.00 4.63
3193 5872 0.978146 AACATGTCGGAGGGGAGAGG 60.978 60.000 0.00 0.00 0.00 3.69
3229 5909 3.259374 GGCTGGATGGATTCTTCTCGATA 59.741 47.826 0.00 0.00 0.00 2.92
3247 5927 7.078228 TCTCGATATAAGTTGATCGTCATGTG 58.922 38.462 16.82 0.00 44.18 3.21
3251 5931 7.998767 CGATATAAGTTGATCGTCATGTGTTTC 59.001 37.037 11.75 0.00 40.02 2.78
3252 5932 4.749245 AAGTTGATCGTCATGTGTTTCC 57.251 40.909 0.00 0.00 0.00 3.13
3257 5937 0.107643 TCGTCATGTGTTTCCAGCCA 59.892 50.000 0.00 0.00 0.00 4.75
3259 5939 1.609208 GTCATGTGTTTCCAGCCACT 58.391 50.000 0.00 0.00 32.76 4.00
3262 5942 3.568007 GTCATGTGTTTCCAGCCACTTTA 59.432 43.478 0.00 0.00 32.76 1.85
3268 5948 6.535540 TGTGTTTCCAGCCACTTTACTAATA 58.464 36.000 0.00 0.00 32.76 0.98
3269 5949 6.653320 TGTGTTTCCAGCCACTTTACTAATAG 59.347 38.462 0.00 0.00 32.76 1.73
3270 5950 5.646360 TGTTTCCAGCCACTTTACTAATAGC 59.354 40.000 0.00 0.00 0.00 2.97
3271 5951 4.417426 TCCAGCCACTTTACTAATAGCC 57.583 45.455 0.00 0.00 0.00 3.93
3272 5952 3.135895 TCCAGCCACTTTACTAATAGCCC 59.864 47.826 0.00 0.00 0.00 5.19
3273 5953 3.136626 CCAGCCACTTTACTAATAGCCCT 59.863 47.826 0.00 0.00 0.00 5.19
3274 5954 4.347000 CCAGCCACTTTACTAATAGCCCTA 59.653 45.833 0.00 0.00 0.00 3.53
3275 5955 5.163237 CCAGCCACTTTACTAATAGCCCTAA 60.163 44.000 0.00 0.00 0.00 2.69
3276 5956 6.465894 CCAGCCACTTTACTAATAGCCCTAAT 60.466 42.308 0.00 0.00 0.00 1.73
3277 5957 7.256547 CCAGCCACTTTACTAATAGCCCTAATA 60.257 40.741 0.00 0.00 0.00 0.98
3278 5958 8.154856 CAGCCACTTTACTAATAGCCCTAATAA 58.845 37.037 0.00 0.00 0.00 1.40
3279 5959 8.891501 AGCCACTTTACTAATAGCCCTAATAAT 58.108 33.333 0.00 0.00 0.00 1.28
3280 5960 9.163899 GCCACTTTACTAATAGCCCTAATAATC 57.836 37.037 0.00 0.00 0.00 1.75
3335 6015 8.886719 ACTAATACTTTCTTAAAACCATACGGC 58.113 33.333 0.00 0.00 34.57 5.68
3336 6016 7.933215 AATACTTTCTTAAAACCATACGGCT 57.067 32.000 0.00 0.00 34.57 5.52
3337 6017 5.622770 ACTTTCTTAAAACCATACGGCTG 57.377 39.130 0.00 0.00 34.57 4.85
3338 6018 5.310451 ACTTTCTTAAAACCATACGGCTGA 58.690 37.500 0.00 0.00 34.57 4.26
3339 6019 5.944007 ACTTTCTTAAAACCATACGGCTGAT 59.056 36.000 0.00 0.00 34.57 2.90
3340 6020 7.107542 ACTTTCTTAAAACCATACGGCTGATA 58.892 34.615 0.00 0.00 34.57 2.15
3341 6021 7.773690 ACTTTCTTAAAACCATACGGCTGATAT 59.226 33.333 0.00 0.00 34.57 1.63
3342 6022 9.268268 CTTTCTTAAAACCATACGGCTGATATA 57.732 33.333 0.00 0.00 34.57 0.86
3343 6023 8.597662 TTCTTAAAACCATACGGCTGATATAC 57.402 34.615 0.00 0.00 34.57 1.47
3344 6024 7.728148 TCTTAAAACCATACGGCTGATATACA 58.272 34.615 0.00 0.00 34.57 2.29
3345 6025 7.654520 TCTTAAAACCATACGGCTGATATACAC 59.345 37.037 0.00 0.00 34.57 2.90
3346 6026 4.948341 AACCATACGGCTGATATACACA 57.052 40.909 0.00 0.00 34.57 3.72
3347 6027 5.483685 AACCATACGGCTGATATACACAT 57.516 39.130 0.00 0.00 34.57 3.21
3348 6028 6.599356 AACCATACGGCTGATATACACATA 57.401 37.500 0.00 0.00 34.57 2.29
3349 6029 5.962433 ACCATACGGCTGATATACACATAC 58.038 41.667 0.00 0.00 34.57 2.39
3350 6030 5.479027 ACCATACGGCTGATATACACATACA 59.521 40.000 0.00 0.00 34.57 2.29
3351 6031 5.805486 CCATACGGCTGATATACACATACAC 59.195 44.000 0.00 0.00 0.00 2.90
3352 6032 4.929819 ACGGCTGATATACACATACACA 57.070 40.909 0.00 0.00 0.00 3.72
3353 6033 4.617959 ACGGCTGATATACACATACACAC 58.382 43.478 0.00 0.00 0.00 3.82
3354 6034 4.341235 ACGGCTGATATACACATACACACT 59.659 41.667 0.00 0.00 0.00 3.55
3355 6035 5.533528 ACGGCTGATATACACATACACACTA 59.466 40.000 0.00 0.00 0.00 2.74
3356 6036 5.856986 CGGCTGATATACACATACACACTAC 59.143 44.000 0.00 0.00 0.00 2.73
3357 6037 6.294010 CGGCTGATATACACATACACACTACT 60.294 42.308 0.00 0.00 0.00 2.57
3358 6038 7.094933 CGGCTGATATACACATACACACTACTA 60.095 40.741 0.00 0.00 0.00 1.82
3359 6039 8.740906 GGCTGATATACACATACACACTACTAT 58.259 37.037 0.00 0.00 0.00 2.12
3368 6048 8.932791 ACACATACACACTACTATTAAACAAGC 58.067 33.333 0.00 0.00 0.00 4.01
3369 6049 8.931775 CACATACACACTACTATTAAACAAGCA 58.068 33.333 0.00 0.00 0.00 3.91
3370 6050 9.496873 ACATACACACTACTATTAAACAAGCAA 57.503 29.630 0.00 0.00 0.00 3.91
3373 6053 8.446599 ACACACTACTATTAAACAAGCAAACT 57.553 30.769 0.00 0.00 0.00 2.66
3374 6054 9.550406 ACACACTACTATTAAACAAGCAAACTA 57.450 29.630 0.00 0.00 0.00 2.24
3397 6077 8.456471 ACTAATTCTTTCTTAAAACCATACGGC 58.544 33.333 0.00 0.00 34.57 5.68
3398 6078 7.462571 AATTCTTTCTTAAAACCATACGGCT 57.537 32.000 0.00 0.00 34.57 5.52
3399 6079 8.570068 AATTCTTTCTTAAAACCATACGGCTA 57.430 30.769 0.00 0.00 34.57 3.93
3400 6080 7.982761 TTCTTTCTTAAAACCATACGGCTAA 57.017 32.000 0.00 0.00 34.57 3.09
3401 6081 8.570068 TTCTTTCTTAAAACCATACGGCTAAT 57.430 30.769 0.00 0.00 34.57 1.73
3402 6082 7.981142 TCTTTCTTAAAACCATACGGCTAATG 58.019 34.615 0.00 0.00 34.57 1.90
3403 6083 7.608761 TCTTTCTTAAAACCATACGGCTAATGT 59.391 33.333 0.00 0.00 34.57 2.71
3404 6084 8.789825 TTTCTTAAAACCATACGGCTAATGTA 57.210 30.769 0.00 0.00 34.57 2.29
3405 6085 7.775397 TCTTAAAACCATACGGCTAATGTAC 57.225 36.000 0.00 0.00 34.57 2.90
3406 6086 7.329499 TCTTAAAACCATACGGCTAATGTACA 58.671 34.615 0.00 0.00 34.57 2.90
3407 6087 5.806366 AAAACCATACGGCTAATGTACAC 57.194 39.130 0.00 0.00 34.57 2.90
3408 6088 4.475051 AACCATACGGCTAATGTACACA 57.525 40.909 0.00 0.00 34.57 3.72
3409 6089 4.054780 ACCATACGGCTAATGTACACAG 57.945 45.455 0.00 0.00 34.57 3.66
3410 6090 3.449737 ACCATACGGCTAATGTACACAGT 59.550 43.478 0.00 0.00 34.57 3.55
3411 6091 4.081309 ACCATACGGCTAATGTACACAGTT 60.081 41.667 0.00 0.00 34.57 3.16
3412 6092 4.873827 CCATACGGCTAATGTACACAGTTT 59.126 41.667 0.00 0.00 0.00 2.66
3413 6093 6.044046 CCATACGGCTAATGTACACAGTTTA 58.956 40.000 0.00 0.00 0.00 2.01
3414 6094 6.535865 CCATACGGCTAATGTACACAGTTTAA 59.464 38.462 0.00 0.00 0.00 1.52
3415 6095 7.225931 CCATACGGCTAATGTACACAGTTTAAT 59.774 37.037 0.00 0.00 0.00 1.40
3416 6096 8.609176 CATACGGCTAATGTACACAGTTTAATT 58.391 33.333 0.00 0.00 0.00 1.40
3417 6097 9.820725 ATACGGCTAATGTACACAGTTTAATTA 57.179 29.630 0.00 0.00 0.00 1.40
3418 6098 8.193250 ACGGCTAATGTACACAGTTTAATTAG 57.807 34.615 0.00 0.91 33.00 1.73
3419 6099 7.123830 CGGCTAATGTACACAGTTTAATTAGC 58.876 38.462 18.68 18.68 45.95 3.09
3421 6101 8.822105 GCTAATGTACACAGTTTAATTAGCAC 57.178 34.615 20.65 1.74 45.95 4.40
3422 6102 7.908601 GCTAATGTACACAGTTTAATTAGCACC 59.091 37.037 20.65 1.22 45.95 5.01
3423 6103 6.753107 ATGTACACAGTTTAATTAGCACCC 57.247 37.500 0.00 0.00 0.00 4.61
3424 6104 5.871834 TGTACACAGTTTAATTAGCACCCT 58.128 37.500 0.00 0.00 0.00 4.34
3425 6105 6.300703 TGTACACAGTTTAATTAGCACCCTT 58.699 36.000 0.00 0.00 0.00 3.95
3426 6106 5.959618 ACACAGTTTAATTAGCACCCTTC 57.040 39.130 0.00 0.00 0.00 3.46
3427 6107 4.454504 ACACAGTTTAATTAGCACCCTTCG 59.545 41.667 0.00 0.00 0.00 3.79
3428 6108 4.693566 CACAGTTTAATTAGCACCCTTCGA 59.306 41.667 0.00 0.00 0.00 3.71
3429 6109 5.354234 CACAGTTTAATTAGCACCCTTCGAT 59.646 40.000 0.00 0.00 0.00 3.59
3430 6110 5.944007 ACAGTTTAATTAGCACCCTTCGATT 59.056 36.000 0.00 0.00 0.00 3.34
3431 6111 6.128007 ACAGTTTAATTAGCACCCTTCGATTG 60.128 38.462 0.00 0.00 0.00 2.67
3432 6112 4.893424 TTAATTAGCACCCTTCGATTGC 57.107 40.909 0.00 0.00 36.45 3.56
3434 6114 2.024176 TTAGCACCCTTCGATTGCTC 57.976 50.000 12.88 0.00 43.14 4.26
3435 6115 0.901827 TAGCACCCTTCGATTGCTCA 59.098 50.000 12.88 1.37 43.14 4.26
3436 6116 0.254178 AGCACCCTTCGATTGCTCAT 59.746 50.000 5.73 0.00 43.14 2.90
3437 6117 1.098050 GCACCCTTCGATTGCTCATT 58.902 50.000 0.00 0.00 33.26 2.57
3438 6118 2.092968 AGCACCCTTCGATTGCTCATTA 60.093 45.455 5.73 0.00 43.14 1.90
3439 6119 2.682856 GCACCCTTCGATTGCTCATTAA 59.317 45.455 0.00 0.00 33.26 1.40
3440 6120 3.128589 GCACCCTTCGATTGCTCATTAAA 59.871 43.478 0.00 0.00 33.26 1.52
3441 6121 4.662145 CACCCTTCGATTGCTCATTAAAC 58.338 43.478 0.00 0.00 0.00 2.01
3442 6122 4.396166 CACCCTTCGATTGCTCATTAAACT 59.604 41.667 0.00 0.00 0.00 2.66
3443 6123 5.010282 ACCCTTCGATTGCTCATTAAACTT 58.990 37.500 0.00 0.00 0.00 2.66
3444 6124 6.093495 CACCCTTCGATTGCTCATTAAACTTA 59.907 38.462 0.00 0.00 0.00 2.24
3445 6125 6.657541 ACCCTTCGATTGCTCATTAAACTTAA 59.342 34.615 0.00 0.00 0.00 1.85
3446 6126 7.339466 ACCCTTCGATTGCTCATTAAACTTAAT 59.661 33.333 0.00 0.00 33.82 1.40
3447 6127 7.857885 CCCTTCGATTGCTCATTAAACTTAATC 59.142 37.037 0.00 0.00 31.28 1.75
3448 6128 8.616076 CCTTCGATTGCTCATTAAACTTAATCT 58.384 33.333 0.00 0.00 31.28 2.40
3455 6135 7.985476 TGCTCATTAAACTTAATCTAACAGCC 58.015 34.615 0.00 0.00 31.28 4.85
3456 6136 7.609918 TGCTCATTAAACTTAATCTAACAGCCA 59.390 33.333 0.00 0.00 31.28 4.75
3457 6137 8.125448 GCTCATTAAACTTAATCTAACAGCCAG 58.875 37.037 0.00 0.00 31.28 4.85
3458 6138 8.506168 TCATTAAACTTAATCTAACAGCCAGG 57.494 34.615 0.00 0.00 31.28 4.45
3459 6139 6.753107 TTAAACTTAATCTAACAGCCAGGC 57.247 37.500 1.84 1.84 0.00 4.85
3460 6140 4.576330 AACTTAATCTAACAGCCAGGCT 57.424 40.909 8.70 8.70 40.77 4.58
3461 6141 4.576330 ACTTAATCTAACAGCCAGGCTT 57.424 40.909 12.86 0.00 36.40 4.35
3462 6142 5.693769 ACTTAATCTAACAGCCAGGCTTA 57.306 39.130 12.86 1.22 36.40 3.09
3463 6143 6.062258 ACTTAATCTAACAGCCAGGCTTAA 57.938 37.500 12.86 5.23 36.40 1.85
3464 6144 6.663734 ACTTAATCTAACAGCCAGGCTTAAT 58.336 36.000 12.86 3.13 36.40 1.40
3465 6145 6.768381 ACTTAATCTAACAGCCAGGCTTAATC 59.232 38.462 12.86 0.00 36.40 1.75
3466 6146 5.379706 AATCTAACAGCCAGGCTTAATCT 57.620 39.130 12.86 0.00 36.40 2.40
3467 6147 6.500589 AATCTAACAGCCAGGCTTAATCTA 57.499 37.500 12.86 0.00 36.40 1.98
3468 6148 5.950544 TCTAACAGCCAGGCTTAATCTAA 57.049 39.130 12.86 0.00 36.40 2.10
3469 6149 6.500589 TCTAACAGCCAGGCTTAATCTAAT 57.499 37.500 12.86 0.00 36.40 1.73
3470 6150 6.525629 TCTAACAGCCAGGCTTAATCTAATC 58.474 40.000 12.86 0.00 36.40 1.75
3471 6151 5.379706 AACAGCCAGGCTTAATCTAATCT 57.620 39.130 12.86 0.00 36.40 2.40
3472 6152 6.500589 AACAGCCAGGCTTAATCTAATCTA 57.499 37.500 12.86 0.00 36.40 1.98
3473 6153 6.694445 ACAGCCAGGCTTAATCTAATCTAT 57.306 37.500 12.86 0.00 36.40 1.98
3474 6154 7.084268 ACAGCCAGGCTTAATCTAATCTATT 57.916 36.000 12.86 0.00 36.40 1.73
3475 6155 7.164803 ACAGCCAGGCTTAATCTAATCTATTC 58.835 38.462 12.86 0.00 36.40 1.75
3476 6156 7.017056 ACAGCCAGGCTTAATCTAATCTATTCT 59.983 37.037 12.86 0.00 36.40 2.40
3477 6157 7.548780 CAGCCAGGCTTAATCTAATCTATTCTC 59.451 40.741 12.86 0.00 36.40 2.87
3478 6158 7.457535 AGCCAGGCTTAATCTAATCTATTCTCT 59.542 37.037 8.70 0.00 33.89 3.10
3479 6159 7.548780 GCCAGGCTTAATCTAATCTATTCTCTG 59.451 40.741 3.29 0.00 0.00 3.35
3480 6160 8.811017 CCAGGCTTAATCTAATCTATTCTCTGA 58.189 37.037 0.00 0.00 0.00 3.27
3500 6180 8.817100 TCTCTGATGTGCATTTAGTAATTTACG 58.183 33.333 0.00 0.00 0.00 3.18
3501 6181 8.487313 TCTGATGTGCATTTAGTAATTTACGT 57.513 30.769 0.00 0.00 0.00 3.57
3502 6182 8.941977 TCTGATGTGCATTTAGTAATTTACGTT 58.058 29.630 0.00 0.00 0.00 3.99
3503 6183 8.888332 TGATGTGCATTTAGTAATTTACGTTG 57.112 30.769 0.00 0.40 0.00 4.10
3504 6184 7.965655 TGATGTGCATTTAGTAATTTACGTTGG 59.034 33.333 0.00 0.00 0.00 3.77
3505 6185 6.087522 TGTGCATTTAGTAATTTACGTTGGC 58.912 36.000 0.00 4.27 0.00 4.52
3506 6186 6.072397 TGTGCATTTAGTAATTTACGTTGGCT 60.072 34.615 0.00 0.00 0.00 4.75
3507 6187 6.250527 GTGCATTTAGTAATTTACGTTGGCTG 59.749 38.462 0.00 0.00 0.00 4.85
3508 6188 6.149640 TGCATTTAGTAATTTACGTTGGCTGA 59.850 34.615 0.00 0.00 0.00 4.26
3509 6189 7.024768 GCATTTAGTAATTTACGTTGGCTGAA 58.975 34.615 0.00 0.00 0.00 3.02
3510 6190 7.007995 GCATTTAGTAATTTACGTTGGCTGAAC 59.992 37.037 0.00 0.00 0.00 3.18
3511 6191 7.493743 TTTAGTAATTTACGTTGGCTGAACA 57.506 32.000 0.00 0.00 33.73 3.18
3512 6192 7.675962 TTAGTAATTTACGTTGGCTGAACAT 57.324 32.000 0.00 0.00 33.73 2.71
3513 6193 5.938322 AGTAATTTACGTTGGCTGAACATG 58.062 37.500 0.00 0.00 33.73 3.21
3514 6194 2.697431 TTTACGTTGGCTGAACATGC 57.303 45.000 0.00 0.00 33.73 4.06
3515 6195 1.890876 TTACGTTGGCTGAACATGCT 58.109 45.000 0.00 0.00 33.73 3.79
3516 6196 1.890876 TACGTTGGCTGAACATGCTT 58.109 45.000 0.00 0.00 33.73 3.91
3517 6197 0.593128 ACGTTGGCTGAACATGCTTC 59.407 50.000 0.00 0.00 33.73 3.86
3518 6198 0.592637 CGTTGGCTGAACATGCTTCA 59.407 50.000 9.41 9.41 33.73 3.02
3519 6199 1.664016 CGTTGGCTGAACATGCTTCAC 60.664 52.381 6.62 5.12 33.73 3.18
3520 6200 0.961019 TTGGCTGAACATGCTTCACC 59.039 50.000 6.62 11.57 0.00 4.02
3521 6201 0.111061 TGGCTGAACATGCTTCACCT 59.889 50.000 18.44 0.00 0.00 4.00
3522 6202 0.807496 GGCTGAACATGCTTCACCTC 59.193 55.000 6.62 1.59 0.00 3.85
3523 6203 1.527034 GCTGAACATGCTTCACCTCA 58.473 50.000 6.62 0.00 0.00 3.86
3524 6204 1.467734 GCTGAACATGCTTCACCTCAG 59.532 52.381 6.62 0.00 34.69 3.35
3525 6205 2.873245 GCTGAACATGCTTCACCTCAGA 60.873 50.000 6.62 0.00 33.65 3.27
3526 6206 2.740981 CTGAACATGCTTCACCTCAGAC 59.259 50.000 6.62 0.00 33.65 3.51
3527 6207 1.728971 GAACATGCTTCACCTCAGACG 59.271 52.381 0.00 0.00 0.00 4.18
3528 6208 0.969149 ACATGCTTCACCTCAGACGA 59.031 50.000 0.00 0.00 0.00 4.20
3529 6209 1.344438 ACATGCTTCACCTCAGACGAA 59.656 47.619 0.00 0.00 0.00 3.85
3530 6210 2.027745 ACATGCTTCACCTCAGACGAAT 60.028 45.455 0.00 0.00 0.00 3.34
3531 6211 3.195610 ACATGCTTCACCTCAGACGAATA 59.804 43.478 0.00 0.00 0.00 1.75
3532 6212 4.141846 ACATGCTTCACCTCAGACGAATAT 60.142 41.667 0.00 0.00 0.00 1.28
3533 6213 5.069119 ACATGCTTCACCTCAGACGAATATA 59.931 40.000 0.00 0.00 0.00 0.86
3534 6214 4.933330 TGCTTCACCTCAGACGAATATAC 58.067 43.478 0.00 0.00 0.00 1.47
3535 6215 3.975670 GCTTCACCTCAGACGAATATACG 59.024 47.826 0.00 0.00 39.31 3.06
3536 6216 4.261072 GCTTCACCTCAGACGAATATACGA 60.261 45.833 0.00 0.00 37.03 3.43
3537 6217 5.732528 GCTTCACCTCAGACGAATATACGAA 60.733 44.000 0.00 0.00 37.03 3.85
3538 6218 5.419760 TCACCTCAGACGAATATACGAAG 57.580 43.478 0.00 0.00 37.03 3.79
3539 6219 3.975670 CACCTCAGACGAATATACGAAGC 59.024 47.826 0.00 0.00 37.03 3.86
3540 6220 3.004524 ACCTCAGACGAATATACGAAGCC 59.995 47.826 0.00 0.00 37.03 4.35
3541 6221 3.566523 CTCAGACGAATATACGAAGCCC 58.433 50.000 0.00 0.00 37.03 5.19
3542 6222 2.295349 TCAGACGAATATACGAAGCCCC 59.705 50.000 0.00 0.00 37.03 5.80
3543 6223 1.268899 AGACGAATATACGAAGCCCCG 59.731 52.381 0.00 0.00 37.03 5.73
3544 6224 0.319297 ACGAATATACGAAGCCCCGC 60.319 55.000 0.00 0.00 37.03 6.13
3545 6225 1.012486 CGAATATACGAAGCCCCGCC 61.012 60.000 0.00 0.00 35.09 6.13
3546 6226 0.672711 GAATATACGAAGCCCCGCCC 60.673 60.000 0.00 0.00 0.00 6.13
3547 6227 2.120737 AATATACGAAGCCCCGCCCC 62.121 60.000 0.00 0.00 0.00 5.80
3583 6263 4.395581 CACCTATGCAATCGCTACAATC 57.604 45.455 0.00 0.00 39.64 2.67
3584 6264 3.809279 CACCTATGCAATCGCTACAATCA 59.191 43.478 0.00 0.00 39.64 2.57
3585 6265 3.809832 ACCTATGCAATCGCTACAATCAC 59.190 43.478 0.00 0.00 39.64 3.06
3586 6266 3.120889 CCTATGCAATCGCTACAATCACG 60.121 47.826 0.00 0.00 39.64 4.35
3587 6267 1.720805 TGCAATCGCTACAATCACGT 58.279 45.000 0.00 0.00 39.64 4.49
3588 6268 2.882324 TGCAATCGCTACAATCACGTA 58.118 42.857 0.00 0.00 39.64 3.57
3589 6269 3.254892 TGCAATCGCTACAATCACGTAA 58.745 40.909 0.00 0.00 39.64 3.18
3590 6270 3.305897 TGCAATCGCTACAATCACGTAAG 59.694 43.478 0.00 0.00 41.33 2.34
3591 6271 3.302480 GCAATCGCTACAATCACGTAAGG 60.302 47.826 0.00 0.00 36.97 2.69
3592 6272 6.300369 GCAATCGCTACAATCACGTAAGGG 62.300 50.000 0.00 0.00 37.33 3.95
3593 6273 1.135527 TCGCTACAATCACGTAAGGGG 59.864 52.381 0.00 0.00 44.90 4.79
3594 6274 1.135527 CGCTACAATCACGTAAGGGGA 59.864 52.381 0.00 0.00 44.90 4.81
3595 6275 2.798499 CGCTACAATCACGTAAGGGGAG 60.798 54.545 0.00 0.00 44.90 4.30
3596 6276 2.429610 GCTACAATCACGTAAGGGGAGA 59.570 50.000 0.00 0.00 44.90 3.71
3597 6277 3.118884 GCTACAATCACGTAAGGGGAGAA 60.119 47.826 0.00 0.00 44.90 2.87
3598 6278 4.622220 GCTACAATCACGTAAGGGGAGAAA 60.622 45.833 0.00 0.00 44.90 2.52
3599 6279 4.360951 ACAATCACGTAAGGGGAGAAAA 57.639 40.909 0.00 0.00 44.90 2.29
3600 6280 4.324267 ACAATCACGTAAGGGGAGAAAAG 58.676 43.478 0.00 0.00 44.90 2.27
3601 6281 4.041198 ACAATCACGTAAGGGGAGAAAAGA 59.959 41.667 0.00 0.00 44.90 2.52
3602 6282 4.903045 ATCACGTAAGGGGAGAAAAGAA 57.097 40.909 0.00 0.00 44.90 2.52
3603 6283 4.267349 TCACGTAAGGGGAGAAAAGAAG 57.733 45.455 0.00 0.00 44.90 2.85
3604 6284 3.899360 TCACGTAAGGGGAGAAAAGAAGA 59.101 43.478 0.00 0.00 44.90 2.87
3605 6285 4.345837 TCACGTAAGGGGAGAAAAGAAGAA 59.654 41.667 0.00 0.00 44.90 2.52
3606 6286 4.691216 CACGTAAGGGGAGAAAAGAAGAAG 59.309 45.833 0.00 0.00 46.39 2.85
3607 6287 4.254492 CGTAAGGGGAGAAAAGAAGAAGG 58.746 47.826 0.00 0.00 0.00 3.46
3608 6288 4.020485 CGTAAGGGGAGAAAAGAAGAAGGA 60.020 45.833 0.00 0.00 0.00 3.36
3609 6289 5.338463 CGTAAGGGGAGAAAAGAAGAAGGAT 60.338 44.000 0.00 0.00 0.00 3.24
3610 6290 4.853468 AGGGGAGAAAAGAAGAAGGATC 57.147 45.455 0.00 0.00 0.00 3.36
3611 6291 3.525609 AGGGGAGAAAAGAAGAAGGATCC 59.474 47.826 2.48 2.48 0.00 3.36
3612 6292 3.372133 GGGGAGAAAAGAAGAAGGATCCC 60.372 52.174 8.55 0.00 43.71 3.85
3613 6293 3.372133 GGGAGAAAAGAAGAAGGATCCCC 60.372 52.174 8.55 0.14 39.43 4.81
3615 6295 4.384757 GGAGAAAAGAAGAAGGATCCCCTC 60.385 50.000 8.55 5.68 43.48 4.30
3616 6296 3.198853 AGAAAAGAAGAAGGATCCCCTCG 59.801 47.826 8.55 0.00 43.48 4.63
3617 6297 0.833949 AAGAAGAAGGATCCCCTCGC 59.166 55.000 8.55 3.96 43.48 5.03
3618 6298 0.031616 AGAAGAAGGATCCCCTCGCT 60.032 55.000 8.55 6.15 43.48 4.93
3619 6299 0.833949 GAAGAAGGATCCCCTCGCTT 59.166 55.000 8.55 5.04 43.48 4.68
3620 6300 0.543749 AAGAAGGATCCCCTCGCTTG 59.456 55.000 8.55 0.00 43.48 4.01
3621 6301 1.524849 GAAGGATCCCCTCGCTTGC 60.525 63.158 8.55 0.00 43.48 4.01
3622 6302 1.977293 GAAGGATCCCCTCGCTTGCT 61.977 60.000 8.55 0.00 43.48 3.91
3623 6303 0.691078 AAGGATCCCCTCGCTTGCTA 60.691 55.000 8.55 0.00 43.48 3.49
3624 6304 0.691078 AGGATCCCCTCGCTTGCTAA 60.691 55.000 8.55 0.00 38.86 3.09
3625 6305 0.533085 GGATCCCCTCGCTTGCTAAC 60.533 60.000 0.00 0.00 0.00 2.34
3626 6306 0.466124 GATCCCCTCGCTTGCTAACT 59.534 55.000 0.00 0.00 0.00 2.24
3627 6307 1.687123 GATCCCCTCGCTTGCTAACTA 59.313 52.381 0.00 0.00 0.00 2.24
3628 6308 0.822164 TCCCCTCGCTTGCTAACTAC 59.178 55.000 0.00 0.00 0.00 2.73
3629 6309 0.179081 CCCCTCGCTTGCTAACTACC 60.179 60.000 0.00 0.00 0.00 3.18
3630 6310 0.179081 CCCTCGCTTGCTAACTACCC 60.179 60.000 0.00 0.00 0.00 3.69
3631 6311 0.179081 CCTCGCTTGCTAACTACCCC 60.179 60.000 0.00 0.00 0.00 4.95
3632 6312 0.527817 CTCGCTTGCTAACTACCCCG 60.528 60.000 0.00 0.00 0.00 5.73
3633 6313 2.171725 CGCTTGCTAACTACCCCGC 61.172 63.158 0.00 0.00 0.00 6.13
3634 6314 2.171725 GCTTGCTAACTACCCCGCG 61.172 63.158 0.00 0.00 0.00 6.46
3635 6315 1.217244 CTTGCTAACTACCCCGCGT 59.783 57.895 4.92 0.00 0.00 6.01
3636 6316 1.079681 TTGCTAACTACCCCGCGTG 60.080 57.895 4.92 0.00 0.00 5.34
3637 6317 2.202837 GCTAACTACCCCGCGTGG 60.203 66.667 5.91 5.91 0.00 4.94
3638 6318 2.202837 CTAACTACCCCGCGTGGC 60.203 66.667 7.81 0.00 0.00 5.01
3639 6319 3.728279 CTAACTACCCCGCGTGGCC 62.728 68.421 7.81 0.00 0.00 5.36
3650 6330 4.622456 CGTGGCCGCAACCAACAC 62.622 66.667 18.18 0.00 42.70 3.32
3651 6331 4.279043 GTGGCCGCAACCAACACC 62.279 66.667 12.58 0.00 42.70 4.16
3655 6335 4.939368 CCGCAACCAACACCCGGA 62.939 66.667 0.73 0.00 41.34 5.14
3656 6336 3.656045 CGCAACCAACACCCGGAC 61.656 66.667 0.73 0.00 0.00 4.79
3657 6337 3.656045 GCAACCAACACCCGGACG 61.656 66.667 0.73 0.00 0.00 4.79
3658 6338 2.109387 CAACCAACACCCGGACGA 59.891 61.111 0.73 0.00 0.00 4.20
3659 6339 1.302192 CAACCAACACCCGGACGAT 60.302 57.895 0.73 0.00 0.00 3.73
3660 6340 1.302192 AACCAACACCCGGACGATG 60.302 57.895 0.73 0.00 0.00 3.84
3661 6341 2.435938 CCAACACCCGGACGATGG 60.436 66.667 0.73 3.71 0.00 3.51
3662 6342 3.124921 CAACACCCGGACGATGGC 61.125 66.667 0.73 0.00 0.00 4.40
3663 6343 4.404098 AACACCCGGACGATGGCC 62.404 66.667 0.73 0.00 0.00 5.36
3673 6353 4.805231 CGATGGCCGTACACCGCA 62.805 66.667 0.00 0.00 34.38 5.69
3674 6354 2.890474 GATGGCCGTACACCGCAG 60.890 66.667 0.00 0.00 34.38 5.18
3699 6379 3.775654 CTGACCCTCCTCCGCCAC 61.776 72.222 0.00 0.00 0.00 5.01
3719 6399 4.415332 GAGTCGCCGCAGAACCGA 62.415 66.667 0.00 0.00 0.00 4.69
3724 6404 4.681978 GCCGCAGAACCGACCAGT 62.682 66.667 0.00 0.00 0.00 4.00
3725 6405 2.967397 CCGCAGAACCGACCAGTA 59.033 61.111 0.00 0.00 0.00 2.74
3726 6406 1.445582 CCGCAGAACCGACCAGTAC 60.446 63.158 0.00 0.00 0.00 2.73
3727 6407 1.800315 CGCAGAACCGACCAGTACG 60.800 63.158 0.00 0.00 0.00 3.67
3728 6408 2.092882 GCAGAACCGACCAGTACGC 61.093 63.158 0.00 0.00 0.00 4.42
3729 6409 1.445582 CAGAACCGACCAGTACGCC 60.446 63.158 0.00 0.00 0.00 5.68
3730 6410 2.505557 GAACCGACCAGTACGCCG 60.506 66.667 0.00 0.00 0.00 6.46
3731 6411 4.729856 AACCGACCAGTACGCCGC 62.730 66.667 0.00 0.00 0.00 6.53
3735 6415 4.065281 GACCAGTACGCCGCACCT 62.065 66.667 0.00 0.00 0.00 4.00
3736 6416 3.984200 GACCAGTACGCCGCACCTC 62.984 68.421 0.00 0.00 0.00 3.85
3737 6417 3.760035 CCAGTACGCCGCACCTCT 61.760 66.667 0.00 0.00 0.00 3.69
3738 6418 2.507102 CAGTACGCCGCACCTCTG 60.507 66.667 0.00 0.00 0.00 3.35
3739 6419 4.436998 AGTACGCCGCACCTCTGC 62.437 66.667 0.00 0.00 40.38 4.26
3747 6427 4.357947 GCACCTCTGCCACGACGA 62.358 66.667 0.00 0.00 37.45 4.20
3748 6428 2.430921 CACCTCTGCCACGACGAC 60.431 66.667 0.00 0.00 0.00 4.34
3749 6429 2.597805 ACCTCTGCCACGACGACT 60.598 61.111 0.00 0.00 0.00 4.18
3750 6430 2.179517 CCTCTGCCACGACGACTC 59.820 66.667 0.00 0.00 0.00 3.36
3751 6431 2.202362 CTCTGCCACGACGACTCG 60.202 66.667 0.00 0.00 46.06 4.18
3752 6432 4.400109 TCTGCCACGACGACTCGC 62.400 66.667 0.00 0.00 44.33 5.03
3778 6458 3.411517 CGGCACCTCCCATCCCTT 61.412 66.667 0.00 0.00 0.00 3.95
3779 6459 2.597903 GGCACCTCCCATCCCTTC 59.402 66.667 0.00 0.00 0.00 3.46
3780 6460 2.597903 GCACCTCCCATCCCTTCC 59.402 66.667 0.00 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 2.060383 CACGCAGGATCCAGGGAGA 61.060 63.158 25.26 0.00 0.00 3.71
45 46 2.359975 GTGTTGAGAAGCCGGGGG 60.360 66.667 2.18 0.00 0.00 5.40
133 134 8.616076 ACTAGATAAACATTTCTTAGCACATGC 58.384 33.333 0.00 0.00 42.49 4.06
229 230 7.341805 TCTAAGATGGAAAATGGAAGAAGGAG 58.658 38.462 0.00 0.00 0.00 3.69
279 280 5.734220 GCACATGCAGGGTATATTGTTTGAG 60.734 44.000 2.31 0.00 41.59 3.02
296 297 1.353103 GTACCGCTCATGCACATGC 59.647 57.895 5.73 0.00 38.65 4.06
309 310 3.065510 CCTATCTATCGCATCTGGTACCG 59.934 52.174 7.57 2.25 0.00 4.02
356 463 7.029563 GGCTAGTTGTCAAAAATAGACCAATG 58.970 38.462 0.00 0.00 35.15 2.82
519 628 3.755378 AGATCCATGCTGAGAAACACAAC 59.245 43.478 0.00 0.00 0.00 3.32
639 748 2.564947 GCACCCCACCAACAAATAATGA 59.435 45.455 0.00 0.00 0.00 2.57
678 1008 4.841246 AGTCACAGAGGAAAAGTACCAGAT 59.159 41.667 0.00 0.00 0.00 2.90
685 1015 8.697507 ATTATCAAAAGTCACAGAGGAAAAGT 57.302 30.769 0.00 0.00 0.00 2.66
757 1087 3.803082 CGGCACCGCTTGACCATG 61.803 66.667 0.00 0.00 0.00 3.66
858 1188 8.475639 ACAACTAATAGGTACAAATCTCATCGT 58.524 33.333 0.00 0.00 0.00 3.73
892 1223 5.509501 GGCATCAGAACAGTTTTTCATTCCA 60.510 40.000 0.00 0.00 0.00 3.53
914 1245 1.412387 CTGCAAAAAGAAAGAGCGGC 58.588 50.000 0.00 0.00 0.00 6.53
1033 1364 6.712547 CCTTCTTCACCTTCAATAGTCTGTTT 59.287 38.462 0.00 0.00 0.00 2.83
1112 1443 5.716094 CAAATGCAAGTGAATCAGAATGGA 58.284 37.500 0.00 0.00 36.16 3.41
1199 1530 3.758023 TGGCTCCACTAAAATCATGTGTG 59.242 43.478 0.00 0.00 0.00 3.82
1220 1551 1.372128 GCCTTCGCCAAGCTTGTTG 60.372 57.895 24.35 15.98 0.00 3.33
1227 1558 1.371635 CAAAACCGCCTTCGCCAAG 60.372 57.895 0.00 0.00 0.00 3.61
1270 1601 3.961849 TGCTTATGTGGCCATTGACTTA 58.038 40.909 9.72 0.00 32.29 2.24
1293 1624 3.965694 AGAGAGCTTGATGCAAAGGATT 58.034 40.909 0.00 0.00 45.94 3.01
1383 1714 1.619827 CCTTGCTTTGAATGGGCAGAA 59.380 47.619 0.00 0.00 37.28 3.02
1614 1945 5.497474 ACCCTTACCTGCAATACTTAAGTG 58.503 41.667 18.56 2.75 0.00 3.16
2127 2464 7.283127 AGCATAGGTTTGGTGAACATAGTATTG 59.717 37.037 0.00 0.00 37.86 1.90
2325 2708 2.552599 TCTTACACATGGCGGTTTGA 57.447 45.000 0.00 0.00 0.00 2.69
2431 5106 4.187694 CAAGAGAACCAGCAGATCCTTAC 58.812 47.826 0.00 0.00 0.00 2.34
2827 5502 1.374947 GCACTTGTGCCTACCCAGA 59.625 57.895 14.17 0.00 0.00 3.86
2925 5601 6.811954 TGTCAGATAAATGCGTCAGGTAATA 58.188 36.000 0.00 0.00 0.00 0.98
2926 5602 5.670485 TGTCAGATAAATGCGTCAGGTAAT 58.330 37.500 0.00 0.00 0.00 1.89
2927 5603 5.079689 TGTCAGATAAATGCGTCAGGTAA 57.920 39.130 0.00 0.00 0.00 2.85
3017 5695 0.313672 GGGCATTTCGCTCAACAACA 59.686 50.000 0.00 0.00 42.61 3.33
3092 5771 4.143030 CCAGATCACGCGGATGATAATTTC 60.143 45.833 12.47 0.00 39.48 2.17
3098 5777 0.972134 ATCCAGATCACGCGGATGAT 59.028 50.000 12.47 11.94 42.15 2.45
3168 5847 1.488812 CCCCTCCGACATGTTAATGGA 59.511 52.381 0.00 4.90 38.19 3.41
3182 5861 1.004862 CACCTTTTTCCTCTCCCCTCC 59.995 57.143 0.00 0.00 0.00 4.30
3183 5862 1.705745 ACACCTTTTTCCTCTCCCCTC 59.294 52.381 0.00 0.00 0.00 4.30
3184 5863 1.834540 ACACCTTTTTCCTCTCCCCT 58.165 50.000 0.00 0.00 0.00 4.79
3185 5864 2.628178 CAAACACCTTTTTCCTCTCCCC 59.372 50.000 0.00 0.00 0.00 4.81
3193 5872 1.760029 TCCAGCCCAAACACCTTTTTC 59.240 47.619 0.00 0.00 0.00 2.29
3229 5909 5.937540 TGGAAACACATGACGATCAACTTAT 59.062 36.000 0.00 0.00 33.40 1.73
3247 5927 5.066117 GGCTATTAGTAAAGTGGCTGGAAAC 59.934 44.000 0.00 0.00 0.00 2.78
3251 5931 3.136626 AGGGCTATTAGTAAAGTGGCTGG 59.863 47.826 0.00 0.00 0.00 4.85
3252 5932 4.423625 AGGGCTATTAGTAAAGTGGCTG 57.576 45.455 0.00 0.00 0.00 4.85
3309 5989 8.886719 GCCGTATGGTTTTAAGAAAGTATTAGT 58.113 33.333 2.17 0.00 37.67 2.24
3310 5990 9.106070 AGCCGTATGGTTTTAAGAAAGTATTAG 57.894 33.333 2.17 0.00 37.67 1.73
3311 5991 8.885722 CAGCCGTATGGTTTTAAGAAAGTATTA 58.114 33.333 2.17 0.00 37.67 0.98
3312 5992 7.608761 TCAGCCGTATGGTTTTAAGAAAGTATT 59.391 33.333 2.17 0.00 37.67 1.89
3313 5993 7.107542 TCAGCCGTATGGTTTTAAGAAAGTAT 58.892 34.615 2.17 0.00 37.67 2.12
3314 5994 6.465948 TCAGCCGTATGGTTTTAAGAAAGTA 58.534 36.000 2.17 0.00 37.67 2.24
3315 5995 5.310451 TCAGCCGTATGGTTTTAAGAAAGT 58.690 37.500 2.17 0.00 37.67 2.66
3316 5996 5.873179 TCAGCCGTATGGTTTTAAGAAAG 57.127 39.130 2.17 0.00 37.67 2.62
3317 5997 9.048446 GTATATCAGCCGTATGGTTTTAAGAAA 57.952 33.333 2.17 0.00 37.67 2.52
3318 5998 8.205512 TGTATATCAGCCGTATGGTTTTAAGAA 58.794 33.333 2.17 0.00 37.67 2.52
3319 5999 7.654520 GTGTATATCAGCCGTATGGTTTTAAGA 59.345 37.037 2.17 0.00 37.67 2.10
3320 6000 7.439955 TGTGTATATCAGCCGTATGGTTTTAAG 59.560 37.037 2.17 0.00 37.67 1.85
3321 6001 7.273712 TGTGTATATCAGCCGTATGGTTTTAA 58.726 34.615 2.17 0.00 37.67 1.52
3322 6002 6.818233 TGTGTATATCAGCCGTATGGTTTTA 58.182 36.000 2.17 0.00 37.67 1.52
3323 6003 5.676552 TGTGTATATCAGCCGTATGGTTTT 58.323 37.500 2.17 0.00 37.67 2.43
3324 6004 5.284861 TGTGTATATCAGCCGTATGGTTT 57.715 39.130 2.17 0.00 37.67 3.27
3325 6005 4.948341 TGTGTATATCAGCCGTATGGTT 57.052 40.909 2.17 0.00 37.67 3.67
3326 6006 5.479027 TGTATGTGTATATCAGCCGTATGGT 59.521 40.000 2.17 0.00 37.67 3.55
3327 6007 5.805486 GTGTATGTGTATATCAGCCGTATGG 59.195 44.000 0.00 0.00 38.77 2.74
3328 6008 6.308041 GTGTGTATGTGTATATCAGCCGTATG 59.692 42.308 0.00 0.00 0.00 2.39
3329 6009 6.208797 AGTGTGTATGTGTATATCAGCCGTAT 59.791 38.462 0.00 0.00 0.00 3.06
3330 6010 5.533528 AGTGTGTATGTGTATATCAGCCGTA 59.466 40.000 0.00 0.00 0.00 4.02
3331 6011 4.341235 AGTGTGTATGTGTATATCAGCCGT 59.659 41.667 0.00 0.00 0.00 5.68
3332 6012 4.871513 AGTGTGTATGTGTATATCAGCCG 58.128 43.478 0.00 0.00 0.00 5.52
3333 6013 6.982852 AGTAGTGTGTATGTGTATATCAGCC 58.017 40.000 0.00 0.00 0.00 4.85
3342 6022 8.932791 GCTTGTTTAATAGTAGTGTGTATGTGT 58.067 33.333 0.00 0.00 0.00 3.72
3343 6023 8.931775 TGCTTGTTTAATAGTAGTGTGTATGTG 58.068 33.333 0.00 0.00 0.00 3.21
3344 6024 9.496873 TTGCTTGTTTAATAGTAGTGTGTATGT 57.503 29.630 0.00 0.00 0.00 2.29
3347 6027 9.550406 AGTTTGCTTGTTTAATAGTAGTGTGTA 57.450 29.630 0.00 0.00 0.00 2.90
3348 6028 8.446599 AGTTTGCTTGTTTAATAGTAGTGTGT 57.553 30.769 0.00 0.00 0.00 3.72
3371 6051 8.456471 GCCGTATGGTTTTAAGAAAGAATTAGT 58.544 33.333 2.17 0.00 37.67 2.24
3372 6052 8.674607 AGCCGTATGGTTTTAAGAAAGAATTAG 58.325 33.333 2.17 0.00 37.67 1.73
3373 6053 8.570068 AGCCGTATGGTTTTAAGAAAGAATTA 57.430 30.769 2.17 0.00 37.67 1.40
3374 6054 7.462571 AGCCGTATGGTTTTAAGAAAGAATT 57.537 32.000 2.17 0.00 37.67 2.17
3375 6055 8.570068 TTAGCCGTATGGTTTTAAGAAAGAAT 57.430 30.769 2.17 0.00 37.67 2.40
3376 6056 7.982761 TTAGCCGTATGGTTTTAAGAAAGAA 57.017 32.000 2.17 0.00 37.67 2.52
3377 6057 7.608761 ACATTAGCCGTATGGTTTTAAGAAAGA 59.391 33.333 2.17 0.00 37.67 2.52
3378 6058 7.758495 ACATTAGCCGTATGGTTTTAAGAAAG 58.242 34.615 2.17 0.00 37.67 2.62
3379 6059 7.690952 ACATTAGCCGTATGGTTTTAAGAAA 57.309 32.000 2.17 0.00 37.67 2.52
3380 6060 7.823310 TGTACATTAGCCGTATGGTTTTAAGAA 59.177 33.333 2.17 0.00 37.67 2.52
3381 6061 7.278424 GTGTACATTAGCCGTATGGTTTTAAGA 59.722 37.037 0.00 0.00 37.67 2.10
3382 6062 7.064847 TGTGTACATTAGCCGTATGGTTTTAAG 59.935 37.037 0.00 0.00 37.67 1.85
3383 6063 6.877855 TGTGTACATTAGCCGTATGGTTTTAA 59.122 34.615 0.00 0.58 37.67 1.52
3384 6064 6.404708 TGTGTACATTAGCCGTATGGTTTTA 58.595 36.000 0.00 0.00 37.67 1.52
3385 6065 5.247084 TGTGTACATTAGCCGTATGGTTTT 58.753 37.500 0.00 0.00 37.67 2.43
3386 6066 4.834534 TGTGTACATTAGCCGTATGGTTT 58.165 39.130 0.00 0.00 37.67 3.27
3387 6067 4.081309 ACTGTGTACATTAGCCGTATGGTT 60.081 41.667 0.00 0.00 37.67 3.67
3388 6068 3.449737 ACTGTGTACATTAGCCGTATGGT 59.550 43.478 0.00 0.00 37.67 3.55
3389 6069 4.054780 ACTGTGTACATTAGCCGTATGG 57.945 45.455 0.00 0.00 38.77 2.74
3390 6070 7.528481 TTAAACTGTGTACATTAGCCGTATG 57.472 36.000 0.00 0.00 0.00 2.39
3391 6071 8.726870 AATTAAACTGTGTACATTAGCCGTAT 57.273 30.769 0.00 0.00 0.00 3.06
3392 6072 9.304731 CTAATTAAACTGTGTACATTAGCCGTA 57.695 33.333 0.00 0.00 0.00 4.02
3393 6073 7.201582 GCTAATTAAACTGTGTACATTAGCCGT 60.202 37.037 20.28 0.00 39.25 5.68
3394 6074 7.123830 GCTAATTAAACTGTGTACATTAGCCG 58.876 38.462 20.28 0.00 39.25 5.52
3395 6075 7.908601 GTGCTAATTAAACTGTGTACATTAGCC 59.091 37.037 23.72 17.53 42.43 3.93
3396 6076 7.908601 GGTGCTAATTAAACTGTGTACATTAGC 59.091 37.037 22.04 22.04 43.02 3.09
3397 6077 8.395633 GGGTGCTAATTAAACTGTGTACATTAG 58.604 37.037 0.00 3.61 0.00 1.73
3398 6078 8.104566 AGGGTGCTAATTAAACTGTGTACATTA 58.895 33.333 0.00 0.00 0.00 1.90
3399 6079 6.946009 AGGGTGCTAATTAAACTGTGTACATT 59.054 34.615 0.00 0.00 0.00 2.71
3400 6080 6.481643 AGGGTGCTAATTAAACTGTGTACAT 58.518 36.000 0.00 0.00 0.00 2.29
3401 6081 5.871834 AGGGTGCTAATTAAACTGTGTACA 58.128 37.500 0.00 0.00 0.00 2.90
3402 6082 6.401796 CGAAGGGTGCTAATTAAACTGTGTAC 60.402 42.308 0.00 0.00 0.00 2.90
3403 6083 5.640357 CGAAGGGTGCTAATTAAACTGTGTA 59.360 40.000 0.00 0.00 0.00 2.90
3404 6084 4.454504 CGAAGGGTGCTAATTAAACTGTGT 59.545 41.667 0.00 0.00 0.00 3.72
3405 6085 4.693566 TCGAAGGGTGCTAATTAAACTGTG 59.306 41.667 0.00 0.00 0.00 3.66
3406 6086 4.901868 TCGAAGGGTGCTAATTAAACTGT 58.098 39.130 0.00 0.00 0.00 3.55
3407 6087 6.258160 CAATCGAAGGGTGCTAATTAAACTG 58.742 40.000 0.00 0.00 0.00 3.16
3408 6088 5.163652 GCAATCGAAGGGTGCTAATTAAACT 60.164 40.000 0.00 0.00 35.40 2.66
3409 6089 5.034797 GCAATCGAAGGGTGCTAATTAAAC 58.965 41.667 0.00 0.00 35.40 2.01
3410 6090 4.947388 AGCAATCGAAGGGTGCTAATTAAA 59.053 37.500 12.78 0.00 43.98 1.52
3411 6091 4.523083 AGCAATCGAAGGGTGCTAATTAA 58.477 39.130 12.78 0.00 43.98 1.40
3412 6092 4.127171 GAGCAATCGAAGGGTGCTAATTA 58.873 43.478 13.98 0.00 45.33 1.40
3413 6093 2.945668 GAGCAATCGAAGGGTGCTAATT 59.054 45.455 13.98 0.00 45.33 1.40
3414 6094 2.092968 TGAGCAATCGAAGGGTGCTAAT 60.093 45.455 13.98 0.00 45.33 1.73
3415 6095 1.277842 TGAGCAATCGAAGGGTGCTAA 59.722 47.619 13.98 6.51 45.33 3.09
3416 6096 0.901827 TGAGCAATCGAAGGGTGCTA 59.098 50.000 13.98 3.77 45.33 3.49
3418 6098 1.098050 AATGAGCAATCGAAGGGTGC 58.902 50.000 0.00 0.00 37.84 5.01
3419 6099 4.396166 AGTTTAATGAGCAATCGAAGGGTG 59.604 41.667 0.00 0.00 0.00 4.61
3420 6100 4.589908 AGTTTAATGAGCAATCGAAGGGT 58.410 39.130 0.00 0.00 0.00 4.34
3421 6101 5.567138 AAGTTTAATGAGCAATCGAAGGG 57.433 39.130 0.00 0.00 0.00 3.95
3422 6102 8.616076 AGATTAAGTTTAATGAGCAATCGAAGG 58.384 33.333 2.03 0.00 33.72 3.46
3429 6109 8.458843 GGCTGTTAGATTAAGTTTAATGAGCAA 58.541 33.333 2.03 0.00 33.72 3.91
3430 6110 7.609918 TGGCTGTTAGATTAAGTTTAATGAGCA 59.390 33.333 2.03 0.00 33.72 4.26
3431 6111 7.985476 TGGCTGTTAGATTAAGTTTAATGAGC 58.015 34.615 2.03 0.00 33.72 4.26
3432 6112 8.616076 CCTGGCTGTTAGATTAAGTTTAATGAG 58.384 37.037 2.03 0.00 33.72 2.90
3433 6113 7.067008 GCCTGGCTGTTAGATTAAGTTTAATGA 59.933 37.037 12.43 0.00 33.72 2.57
3434 6114 7.067494 AGCCTGGCTGTTAGATTAAGTTTAATG 59.933 37.037 22.71 0.00 37.57 1.90
3435 6115 7.119387 AGCCTGGCTGTTAGATTAAGTTTAAT 58.881 34.615 22.71 0.00 37.57 1.40
3436 6116 6.481643 AGCCTGGCTGTTAGATTAAGTTTAA 58.518 36.000 22.71 0.00 37.57 1.52
3437 6117 6.062258 AGCCTGGCTGTTAGATTAAGTTTA 57.938 37.500 22.71 0.00 37.57 2.01
3438 6118 4.923415 AGCCTGGCTGTTAGATTAAGTTT 58.077 39.130 22.71 0.00 37.57 2.66
3439 6119 4.576330 AGCCTGGCTGTTAGATTAAGTT 57.424 40.909 22.71 0.00 37.57 2.66
3440 6120 4.576330 AAGCCTGGCTGTTAGATTAAGT 57.424 40.909 24.16 0.00 39.62 2.24
3441 6121 6.995091 AGATTAAGCCTGGCTGTTAGATTAAG 59.005 38.462 24.16 0.00 39.62 1.85
3442 6122 6.900194 AGATTAAGCCTGGCTGTTAGATTAA 58.100 36.000 24.16 15.02 39.62 1.40
3443 6123 6.500589 AGATTAAGCCTGGCTGTTAGATTA 57.499 37.500 24.16 5.89 39.62 1.75
3444 6124 5.379706 AGATTAAGCCTGGCTGTTAGATT 57.620 39.130 24.16 7.02 39.62 2.40
3445 6125 6.500589 TTAGATTAAGCCTGGCTGTTAGAT 57.499 37.500 24.16 11.64 39.62 1.98
3446 6126 5.950544 TTAGATTAAGCCTGGCTGTTAGA 57.049 39.130 24.16 7.06 39.62 2.10
3447 6127 6.529220 AGATTAGATTAAGCCTGGCTGTTAG 58.471 40.000 24.16 0.00 39.62 2.34
3448 6128 6.500589 AGATTAGATTAAGCCTGGCTGTTA 57.499 37.500 24.16 9.17 39.62 2.41
3449 6129 5.379706 AGATTAGATTAAGCCTGGCTGTT 57.620 39.130 24.16 10.34 39.62 3.16
3450 6130 6.694445 ATAGATTAGATTAAGCCTGGCTGT 57.306 37.500 24.16 14.59 39.62 4.40
3451 6131 7.393216 AGAATAGATTAGATTAAGCCTGGCTG 58.607 38.462 24.16 0.00 39.62 4.85
3452 6132 7.457535 AGAGAATAGATTAGATTAAGCCTGGCT 59.542 37.037 17.22 17.22 42.56 4.75
3453 6133 7.548780 CAGAGAATAGATTAGATTAAGCCTGGC 59.451 40.741 11.65 11.65 0.00 4.85
3454 6134 8.811017 TCAGAGAATAGATTAGATTAAGCCTGG 58.189 37.037 0.00 0.00 0.00 4.45
3474 6154 8.817100 CGTAAATTACTAAATGCACATCAGAGA 58.183 33.333 1.42 0.00 0.00 3.10
3475 6155 8.604035 ACGTAAATTACTAAATGCACATCAGAG 58.396 33.333 1.42 0.00 0.00 3.35
3476 6156 8.487313 ACGTAAATTACTAAATGCACATCAGA 57.513 30.769 1.42 0.00 0.00 3.27
3477 6157 8.998989 CAACGTAAATTACTAAATGCACATCAG 58.001 33.333 1.42 0.00 0.00 2.90
3478 6158 7.965655 CCAACGTAAATTACTAAATGCACATCA 59.034 33.333 1.42 0.00 0.00 3.07
3479 6159 7.044314 GCCAACGTAAATTACTAAATGCACATC 60.044 37.037 1.42 0.00 0.00 3.06
3480 6160 6.750039 GCCAACGTAAATTACTAAATGCACAT 59.250 34.615 1.42 0.00 0.00 3.21
3481 6161 6.072397 AGCCAACGTAAATTACTAAATGCACA 60.072 34.615 1.42 0.00 0.00 4.57
3482 6162 6.250527 CAGCCAACGTAAATTACTAAATGCAC 59.749 38.462 1.42 0.00 0.00 4.57
3483 6163 6.149640 TCAGCCAACGTAAATTACTAAATGCA 59.850 34.615 1.42 0.00 0.00 3.96
3484 6164 6.548171 TCAGCCAACGTAAATTACTAAATGC 58.452 36.000 1.42 0.00 0.00 3.56
3485 6165 8.018520 TGTTCAGCCAACGTAAATTACTAAATG 58.981 33.333 1.42 0.00 37.90 2.32
3486 6166 8.101654 TGTTCAGCCAACGTAAATTACTAAAT 57.898 30.769 1.42 0.00 37.90 1.40
3487 6167 7.493743 TGTTCAGCCAACGTAAATTACTAAA 57.506 32.000 1.42 0.00 37.90 1.85
3488 6168 7.523219 CATGTTCAGCCAACGTAAATTACTAA 58.477 34.615 1.42 0.00 37.90 2.24
3489 6169 6.402766 GCATGTTCAGCCAACGTAAATTACTA 60.403 38.462 1.42 0.00 37.90 1.82
3490 6170 5.619086 GCATGTTCAGCCAACGTAAATTACT 60.619 40.000 1.42 0.00 37.90 2.24
3491 6171 4.557301 GCATGTTCAGCCAACGTAAATTAC 59.443 41.667 0.00 0.00 37.90 1.89
3492 6172 4.457603 AGCATGTTCAGCCAACGTAAATTA 59.542 37.500 0.00 0.00 37.90 1.40
3493 6173 3.255642 AGCATGTTCAGCCAACGTAAATT 59.744 39.130 0.00 0.00 37.90 1.82
3494 6174 2.819608 AGCATGTTCAGCCAACGTAAAT 59.180 40.909 0.00 0.00 37.90 1.40
3495 6175 2.226330 AGCATGTTCAGCCAACGTAAA 58.774 42.857 0.00 0.00 37.90 2.01
3496 6176 1.890876 AGCATGTTCAGCCAACGTAA 58.109 45.000 0.00 0.00 37.90 3.18
3497 6177 1.804151 GAAGCATGTTCAGCCAACGTA 59.196 47.619 0.00 0.00 37.90 3.57
3498 6178 0.593128 GAAGCATGTTCAGCCAACGT 59.407 50.000 0.00 0.00 37.90 3.99
3499 6179 0.592637 TGAAGCATGTTCAGCCAACG 59.407 50.000 6.62 0.00 37.90 4.10
3500 6180 1.336240 GGTGAAGCATGTTCAGCCAAC 60.336 52.381 20.26 7.50 40.06 3.77
3501 6181 0.961019 GGTGAAGCATGTTCAGCCAA 59.039 50.000 20.26 0.00 40.06 4.52
3502 6182 0.111061 AGGTGAAGCATGTTCAGCCA 59.889 50.000 24.02 4.12 45.18 4.75
3503 6183 0.807496 GAGGTGAAGCATGTTCAGCC 59.193 55.000 24.02 18.95 45.18 4.85
3504 6184 1.467734 CTGAGGTGAAGCATGTTCAGC 59.532 52.381 21.98 21.98 44.61 4.26
3505 6185 2.740981 GTCTGAGGTGAAGCATGTTCAG 59.259 50.000 9.93 0.39 34.76 3.02
3506 6186 2.771089 GTCTGAGGTGAAGCATGTTCA 58.229 47.619 6.62 6.62 0.00 3.18
3507 6187 1.728971 CGTCTGAGGTGAAGCATGTTC 59.271 52.381 0.00 0.00 0.00 3.18
3508 6188 1.344438 TCGTCTGAGGTGAAGCATGTT 59.656 47.619 0.00 0.00 0.00 2.71
3509 6189 0.969149 TCGTCTGAGGTGAAGCATGT 59.031 50.000 0.00 0.00 0.00 3.21
3510 6190 2.084610 TTCGTCTGAGGTGAAGCATG 57.915 50.000 0.00 0.00 0.00 4.06
3511 6191 4.679373 ATATTCGTCTGAGGTGAAGCAT 57.321 40.909 0.00 0.00 0.00 3.79
3512 6192 4.497507 CGTATATTCGTCTGAGGTGAAGCA 60.498 45.833 0.00 0.00 0.00 3.91
3513 6193 3.975670 CGTATATTCGTCTGAGGTGAAGC 59.024 47.826 0.00 0.00 0.00 3.86
3514 6194 5.419760 TCGTATATTCGTCTGAGGTGAAG 57.580 43.478 1.52 0.00 0.00 3.02
3515 6195 5.732528 GCTTCGTATATTCGTCTGAGGTGAA 60.733 44.000 1.52 0.00 0.00 3.18
3516 6196 4.261072 GCTTCGTATATTCGTCTGAGGTGA 60.261 45.833 1.52 0.00 0.00 4.02
3517 6197 3.975670 GCTTCGTATATTCGTCTGAGGTG 59.024 47.826 1.52 0.00 0.00 4.00
3518 6198 3.004524 GGCTTCGTATATTCGTCTGAGGT 59.995 47.826 1.52 0.00 0.00 3.85
3519 6199 3.566523 GGCTTCGTATATTCGTCTGAGG 58.433 50.000 1.52 0.00 0.00 3.86
3520 6200 3.566523 GGGCTTCGTATATTCGTCTGAG 58.433 50.000 1.52 0.00 0.00 3.35
3521 6201 2.295349 GGGGCTTCGTATATTCGTCTGA 59.705 50.000 1.52 0.00 0.00 3.27
3522 6202 2.673833 GGGGCTTCGTATATTCGTCTG 58.326 52.381 1.52 0.00 0.00 3.51
3523 6203 1.268899 CGGGGCTTCGTATATTCGTCT 59.731 52.381 1.52 0.00 0.00 4.18
3524 6204 1.694639 CGGGGCTTCGTATATTCGTC 58.305 55.000 1.52 0.00 0.00 4.20
3525 6205 0.319297 GCGGGGCTTCGTATATTCGT 60.319 55.000 1.52 0.00 0.00 3.85
3526 6206 1.012486 GGCGGGGCTTCGTATATTCG 61.012 60.000 0.00 0.00 0.00 3.34
3527 6207 0.672711 GGGCGGGGCTTCGTATATTC 60.673 60.000 3.24 0.00 0.00 1.75
3528 6208 1.373812 GGGCGGGGCTTCGTATATT 59.626 57.895 3.24 0.00 0.00 1.28
3529 6209 2.590114 GGGGCGGGGCTTCGTATAT 61.590 63.158 3.24 0.00 0.00 0.86
3530 6210 3.236233 GGGGCGGGGCTTCGTATA 61.236 66.667 3.24 0.00 0.00 1.47
3562 6242 3.809279 TGATTGTAGCGATTGCATAGGTG 59.191 43.478 7.90 0.00 46.23 4.00
3563 6243 3.809832 GTGATTGTAGCGATTGCATAGGT 59.190 43.478 7.90 0.00 46.23 3.08
3564 6244 3.120889 CGTGATTGTAGCGATTGCATAGG 60.121 47.826 7.90 0.00 46.23 2.57
3565 6245 3.490896 ACGTGATTGTAGCGATTGCATAG 59.509 43.478 7.90 0.00 46.23 2.23
3566 6246 3.453424 ACGTGATTGTAGCGATTGCATA 58.547 40.909 7.90 0.00 46.23 3.14
3567 6247 2.279741 ACGTGATTGTAGCGATTGCAT 58.720 42.857 7.90 0.00 46.23 3.96
3568 6248 1.720805 ACGTGATTGTAGCGATTGCA 58.279 45.000 7.90 0.00 46.23 4.08
3569 6249 3.302480 CCTTACGTGATTGTAGCGATTGC 60.302 47.826 0.00 0.00 43.24 3.56
3570 6250 3.245284 CCCTTACGTGATTGTAGCGATTG 59.755 47.826 0.00 0.00 0.00 2.67
3571 6251 3.454375 CCCTTACGTGATTGTAGCGATT 58.546 45.455 0.00 0.00 0.00 3.34
3572 6252 2.223971 CCCCTTACGTGATTGTAGCGAT 60.224 50.000 0.00 0.00 0.00 4.58
3573 6253 1.135527 CCCCTTACGTGATTGTAGCGA 59.864 52.381 0.00 0.00 0.00 4.93
3574 6254 1.135527 TCCCCTTACGTGATTGTAGCG 59.864 52.381 0.00 0.00 0.00 4.26
3575 6255 2.429610 TCTCCCCTTACGTGATTGTAGC 59.570 50.000 0.00 0.00 0.00 3.58
3576 6256 4.730949 TTCTCCCCTTACGTGATTGTAG 57.269 45.455 0.00 0.00 0.00 2.74
3577 6257 5.246656 TCTTTTCTCCCCTTACGTGATTGTA 59.753 40.000 0.00 0.00 0.00 2.41
3578 6258 4.041198 TCTTTTCTCCCCTTACGTGATTGT 59.959 41.667 0.00 0.00 0.00 2.71
3579 6259 4.575885 TCTTTTCTCCCCTTACGTGATTG 58.424 43.478 0.00 0.00 0.00 2.67
3580 6260 4.903045 TCTTTTCTCCCCTTACGTGATT 57.097 40.909 0.00 0.00 0.00 2.57
3581 6261 4.530946 TCTTCTTTTCTCCCCTTACGTGAT 59.469 41.667 0.00 0.00 0.00 3.06
3582 6262 3.899360 TCTTCTTTTCTCCCCTTACGTGA 59.101 43.478 0.00 0.00 0.00 4.35
3583 6263 4.267349 TCTTCTTTTCTCCCCTTACGTG 57.733 45.455 0.00 0.00 0.00 4.49
3584 6264 4.262938 CCTTCTTCTTTTCTCCCCTTACGT 60.263 45.833 0.00 0.00 0.00 3.57
3585 6265 4.020485 TCCTTCTTCTTTTCTCCCCTTACG 60.020 45.833 0.00 0.00 0.00 3.18
3586 6266 5.500546 TCCTTCTTCTTTTCTCCCCTTAC 57.499 43.478 0.00 0.00 0.00 2.34
3587 6267 5.191921 GGATCCTTCTTCTTTTCTCCCCTTA 59.808 44.000 3.84 0.00 0.00 2.69
3588 6268 4.017958 GGATCCTTCTTCTTTTCTCCCCTT 60.018 45.833 3.84 0.00 0.00 3.95
3589 6269 3.525609 GGATCCTTCTTCTTTTCTCCCCT 59.474 47.826 3.84 0.00 0.00 4.79
3590 6270 3.372133 GGGATCCTTCTTCTTTTCTCCCC 60.372 52.174 12.58 0.00 35.97 4.81
3591 6271 3.372133 GGGGATCCTTCTTCTTTTCTCCC 60.372 52.174 12.58 0.00 40.34 4.30
3592 6272 3.525609 AGGGGATCCTTCTTCTTTTCTCC 59.474 47.826 12.58 0.00 41.56 3.71
3593 6273 4.682050 CGAGGGGATCCTTCTTCTTTTCTC 60.682 50.000 12.58 3.23 45.05 2.87
3594 6274 3.198853 CGAGGGGATCCTTCTTCTTTTCT 59.801 47.826 12.58 0.00 45.05 2.52
3595 6275 3.536570 CGAGGGGATCCTTCTTCTTTTC 58.463 50.000 12.58 0.00 45.05 2.29
3596 6276 2.356227 GCGAGGGGATCCTTCTTCTTTT 60.356 50.000 12.58 0.00 45.05 2.27
3597 6277 1.210722 GCGAGGGGATCCTTCTTCTTT 59.789 52.381 12.58 0.00 45.05 2.52
3598 6278 0.833949 GCGAGGGGATCCTTCTTCTT 59.166 55.000 12.58 0.00 45.05 2.52
3599 6279 0.031616 AGCGAGGGGATCCTTCTTCT 60.032 55.000 12.58 8.23 45.05 2.85
3600 6280 0.833949 AAGCGAGGGGATCCTTCTTC 59.166 55.000 12.58 0.69 45.05 2.87
3601 6281 0.543749 CAAGCGAGGGGATCCTTCTT 59.456 55.000 12.58 5.34 45.05 2.52
3602 6282 1.977293 GCAAGCGAGGGGATCCTTCT 61.977 60.000 12.58 9.75 45.05 2.85
3603 6283 1.524849 GCAAGCGAGGGGATCCTTC 60.525 63.158 12.58 9.08 45.05 3.46
3604 6284 0.691078 TAGCAAGCGAGGGGATCCTT 60.691 55.000 12.58 0.00 45.05 3.36
3606 6286 0.533085 GTTAGCAAGCGAGGGGATCC 60.533 60.000 1.92 1.92 0.00 3.36
3607 6287 0.466124 AGTTAGCAAGCGAGGGGATC 59.534 55.000 0.00 0.00 0.00 3.36
3608 6288 1.413077 GTAGTTAGCAAGCGAGGGGAT 59.587 52.381 0.00 0.00 0.00 3.85
3609 6289 0.822164 GTAGTTAGCAAGCGAGGGGA 59.178 55.000 0.00 0.00 0.00 4.81
3610 6290 0.179081 GGTAGTTAGCAAGCGAGGGG 60.179 60.000 0.00 0.00 0.00 4.79
3611 6291 0.179081 GGGTAGTTAGCAAGCGAGGG 60.179 60.000 0.00 0.00 0.00 4.30
3612 6292 0.179081 GGGGTAGTTAGCAAGCGAGG 60.179 60.000 0.00 0.00 0.00 4.63
3613 6293 0.527817 CGGGGTAGTTAGCAAGCGAG 60.528 60.000 0.00 0.00 0.00 5.03
3614 6294 1.514087 CGGGGTAGTTAGCAAGCGA 59.486 57.895 0.00 0.00 0.00 4.93
3615 6295 2.171725 GCGGGGTAGTTAGCAAGCG 61.172 63.158 0.00 0.00 0.00 4.68
3616 6296 2.171725 CGCGGGGTAGTTAGCAAGC 61.172 63.158 0.00 0.00 0.00 4.01
3617 6297 1.082117 CACGCGGGGTAGTTAGCAAG 61.082 60.000 12.47 0.00 0.00 4.01
3618 6298 1.079681 CACGCGGGGTAGTTAGCAA 60.080 57.895 12.47 0.00 0.00 3.91
3619 6299 2.574929 CACGCGGGGTAGTTAGCA 59.425 61.111 12.47 0.00 0.00 3.49
3620 6300 2.202837 CCACGCGGGGTAGTTAGC 60.203 66.667 22.33 0.00 0.00 3.09
3621 6301 2.202837 GCCACGCGGGGTAGTTAG 60.203 66.667 31.19 0.72 37.04 2.34
3622 6302 3.773404 GGCCACGCGGGGTAGTTA 61.773 66.667 31.19 0.00 37.04 2.24
3633 6313 4.622456 GTGTTGGTTGCGGCCACG 62.622 66.667 2.24 0.00 38.42 4.94
3634 6314 4.279043 GGTGTTGGTTGCGGCCAC 62.279 66.667 2.24 0.00 38.42 5.01
3638 6318 4.939368 TCCGGGTGTTGGTTGCGG 62.939 66.667 0.00 0.00 0.00 5.69
3639 6319 3.656045 GTCCGGGTGTTGGTTGCG 61.656 66.667 0.00 0.00 0.00 4.85
3640 6320 3.656045 CGTCCGGGTGTTGGTTGC 61.656 66.667 0.00 0.00 0.00 4.17
3641 6321 1.302192 ATCGTCCGGGTGTTGGTTG 60.302 57.895 0.00 0.00 0.00 3.77
3642 6322 1.302192 CATCGTCCGGGTGTTGGTT 60.302 57.895 0.00 0.00 0.00 3.67
3643 6323 2.345991 CATCGTCCGGGTGTTGGT 59.654 61.111 0.00 0.00 0.00 3.67
3644 6324 2.435938 CCATCGTCCGGGTGTTGG 60.436 66.667 0.00 5.58 0.00 3.77
3645 6325 3.124921 GCCATCGTCCGGGTGTTG 61.125 66.667 0.00 0.00 0.00 3.33
3646 6326 4.404098 GGCCATCGTCCGGGTGTT 62.404 66.667 0.00 0.00 0.00 3.32
3656 6336 4.805231 TGCGGTGTACGGCCATCG 62.805 66.667 2.24 5.04 44.51 3.84
3657 6337 2.890474 CTGCGGTGTACGGCCATC 60.890 66.667 2.24 0.00 44.51 3.51
3682 6362 3.775654 GTGGCGGAGGAGGGTCAG 61.776 72.222 0.00 0.00 0.00 3.51
3702 6382 4.415332 TCGGTTCTGCGGCGACTC 62.415 66.667 12.98 0.00 0.00 3.36
3703 6383 4.719369 GTCGGTTCTGCGGCGACT 62.719 66.667 12.98 0.00 0.00 4.18
3707 6387 3.291101 TACTGGTCGGTTCTGCGGC 62.291 63.158 0.00 0.00 0.00 6.53
3708 6388 1.445582 GTACTGGTCGGTTCTGCGG 60.446 63.158 0.00 0.00 0.00 5.69
3709 6389 1.800315 CGTACTGGTCGGTTCTGCG 60.800 63.158 0.00 0.00 0.00 5.18
3710 6390 2.092882 GCGTACTGGTCGGTTCTGC 61.093 63.158 0.00 0.00 0.00 4.26
3711 6391 1.445582 GGCGTACTGGTCGGTTCTG 60.446 63.158 0.00 0.00 0.00 3.02
3712 6392 2.968206 GGCGTACTGGTCGGTTCT 59.032 61.111 0.00 0.00 0.00 3.01
3713 6393 2.505557 CGGCGTACTGGTCGGTTC 60.506 66.667 0.00 0.00 0.00 3.62
3714 6394 4.729856 GCGGCGTACTGGTCGGTT 62.730 66.667 9.37 0.00 35.13 4.44
3718 6398 3.984200 GAGGTGCGGCGTACTGGTC 62.984 68.421 26.32 16.73 0.00 4.02
3719 6399 4.065281 GAGGTGCGGCGTACTGGT 62.065 66.667 26.32 12.38 0.00 4.00
3720 6400 3.760035 AGAGGTGCGGCGTACTGG 61.760 66.667 26.32 0.00 0.00 4.00
3721 6401 2.507102 CAGAGGTGCGGCGTACTG 60.507 66.667 26.32 14.06 0.00 2.74
3722 6402 4.436998 GCAGAGGTGCGGCGTACT 62.437 66.667 26.32 13.50 40.71 2.73
3731 6411 2.430921 GTCGTCGTGGCAGAGGTG 60.431 66.667 0.00 0.00 0.00 4.00
3732 6412 2.597805 AGTCGTCGTGGCAGAGGT 60.598 61.111 0.00 0.00 0.00 3.85
3733 6413 2.179517 GAGTCGTCGTGGCAGAGG 59.820 66.667 0.00 0.00 0.00 3.69
3734 6414 2.202362 CGAGTCGTCGTGGCAGAG 60.202 66.667 3.82 0.00 41.57 3.35
3761 6441 3.406595 GAAGGGATGGGAGGTGCCG 62.407 68.421 0.00 0.00 37.63 5.69
3762 6442 2.597903 GAAGGGATGGGAGGTGCC 59.402 66.667 0.00 0.00 0.00 5.01
3763 6443 2.597903 GGAAGGGATGGGAGGTGC 59.402 66.667 0.00 0.00 0.00 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.