Multiple sequence alignment - TraesCS5A01G059200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G059200 chr5A 100.000 2621 0 0 1 2621 59619289 59616669 0.000000e+00 4841.0
1 TraesCS5A01G059200 chr5A 85.932 263 28 7 2188 2447 482520342 482520598 3.320000e-69 272.0
2 TraesCS5A01G059200 chr5A 85.932 263 27 9 2188 2447 482526546 482526801 3.320000e-69 272.0
3 TraesCS5A01G059200 chr5D 92.767 1341 75 9 318 1648 68701338 68700010 0.000000e+00 1919.0
4 TraesCS5A01G059200 chr5D 91.220 410 27 4 1650 2058 68699967 68699566 1.370000e-152 549.0
5 TraesCS5A01G059200 chr5D 89.820 334 20 9 2128 2457 68699440 68699117 1.450000e-112 416.0
6 TraesCS5A01G059200 chr5D 85.714 266 24 11 2189 2447 382088334 382088592 4.300000e-68 268.0
7 TraesCS5A01G059200 chr5D 89.091 55 4 2 2500 2553 478723382 478723435 1.680000e-07 67.6
8 TraesCS5A01G059200 chr5D 91.489 47 4 0 1 47 68701459 68701413 6.050000e-07 65.8
9 TraesCS5A01G059200 chr5B 93.142 977 47 10 219 1187 74661348 74660384 0.000000e+00 1415.0
10 TraesCS5A01G059200 chr5B 91.258 469 31 7 1186 1648 74660260 74659796 4.760000e-177 630.0
11 TraesCS5A01G059200 chr5B 87.531 401 38 7 1650 2045 74659749 74659356 1.110000e-123 453.0
12 TraesCS5A01G059200 chr5B 89.458 332 21 10 2128 2453 74659338 74659015 8.730000e-110 407.0
13 TraesCS5A01G059200 chr5B 84.694 98 10 5 2498 2592 123405265 123405360 2.780000e-15 93.5
14 TraesCS5A01G059200 chr3A 88.263 213 17 8 2191 2398 64784109 64784318 5.600000e-62 248.0
15 TraesCS5A01G059200 chr3A 84.940 166 14 4 43 207 491190875 491190720 9.710000e-35 158.0
16 TraesCS5A01G059200 chr1B 84.091 264 32 9 2185 2440 571444229 571444490 2.010000e-61 246.0
17 TraesCS5A01G059200 chr1B 82.463 268 34 11 2191 2449 570724259 570723996 3.400000e-54 222.0
18 TraesCS5A01G059200 chr1D 82.510 263 37 9 2190 2448 420227206 420226949 3.400000e-54 222.0
19 TraesCS5A01G059200 chr1A 95.082 122 5 1 2500 2621 338846169 338846049 9.570000e-45 191.0
20 TraesCS5A01G059200 chr4D 86.145 166 11 7 43 207 509824770 509824616 4.490000e-38 169.0
21 TraesCS5A01G059200 chr7D 86.420 162 11 4 45 205 156796992 156796841 1.610000e-37 167.0
22 TraesCS5A01G059200 chr7D 84.659 176 16 8 46 220 436961795 436961960 5.800000e-37 165.0
23 TraesCS5A01G059200 chr7D 86.441 59 6 2 2501 2558 412163839 412163896 2.180000e-06 63.9
24 TraesCS5A01G059200 chr7B 84.659 176 16 8 46 220 453623290 453623455 5.800000e-37 165.0
25 TraesCS5A01G059200 chr3B 85.542 166 14 7 44 207 481628083 481627926 5.800000e-37 165.0
26 TraesCS5A01G059200 chr6A 85.890 163 12 5 46 207 532026929 532026777 2.090000e-36 163.0
27 TraesCS5A01G059200 chr2D 84.884 172 12 10 42 210 406958408 406958568 7.510000e-36 161.0
28 TraesCS5A01G059200 chr7A 84.091 176 17 8 46 220 486929940 486930105 2.700000e-35 159.0
29 TraesCS5A01G059200 chr2B 80.808 99 15 2 2500 2594 17177107 17177009 1.010000e-09 75.0
30 TraesCS5A01G059200 chr2B 90.566 53 3 2 2501 2552 140527013 140526962 4.680000e-08 69.4
31 TraesCS5A01G059200 chr2B 82.857 70 7 5 2501 2568 794418943 794419009 1.010000e-04 58.4
32 TraesCS5A01G059200 chr3D 88.136 59 5 2 2501 2558 445789235 445789178 4.680000e-08 69.4
33 TraesCS5A01G059200 chr4B 88.679 53 4 2 2505 2556 349149319 349149370 2.180000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G059200 chr5A 59616669 59619289 2620 True 4841.00 4841 100.00000 1 2621 1 chr5A.!!$R1 2620
1 TraesCS5A01G059200 chr5D 68699117 68701459 2342 True 737.45 1919 91.32400 1 2457 4 chr5D.!!$R1 2456
2 TraesCS5A01G059200 chr5B 74659015 74661348 2333 True 726.25 1415 90.34725 219 2453 4 chr5B.!!$R1 2234

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
985 992 0.584876 GTAGTTGTGTGGTTCCACGC 59.415 55.0 23.48 23.48 44.76 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2555 2812 0.108585 ATCGCAAACAGTCACACCCT 59.891 50.0 0.0 0.0 0.0 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 5.179929 TGTGATGCACTTACTCACTTTGATG 59.820 40.000 16.16 0.00 39.94 3.07
45 46 5.180117 GTGATGCACTTACTCACTTTGATGT 59.820 40.000 9.61 0.00 37.04 3.06
46 47 6.368791 GTGATGCACTTACTCACTTTGATGTA 59.631 38.462 9.61 0.00 37.04 2.29
47 48 6.368791 TGATGCACTTACTCACTTTGATGTAC 59.631 38.462 0.00 0.00 0.00 2.90
48 49 5.853936 TGCACTTACTCACTTTGATGTACT 58.146 37.500 0.00 0.00 0.00 2.73
49 50 5.926542 TGCACTTACTCACTTTGATGTACTC 59.073 40.000 0.00 0.00 0.00 2.59
50 51 5.348997 GCACTTACTCACTTTGATGTACTCC 59.651 44.000 0.00 0.00 0.00 3.85
51 52 6.455647 CACTTACTCACTTTGATGTACTCCA 58.544 40.000 0.00 0.00 0.00 3.86
52 53 7.099764 CACTTACTCACTTTGATGTACTCCAT 58.900 38.462 0.00 0.00 36.13 3.41
61 62 3.802948 GATGTACTCCATCCGTTCACT 57.197 47.619 0.00 0.00 43.59 3.41
62 63 4.913335 GATGTACTCCATCCGTTCACTA 57.087 45.455 0.00 0.00 43.59 2.74
63 64 5.455056 GATGTACTCCATCCGTTCACTAT 57.545 43.478 0.00 0.00 43.59 2.12
64 65 5.844004 GATGTACTCCATCCGTTCACTATT 58.156 41.667 0.00 0.00 43.59 1.73
65 66 6.971726 ATGTACTCCATCCGTTCACTATTA 57.028 37.500 0.00 0.00 0.00 0.98
66 67 6.971726 TGTACTCCATCCGTTCACTATTAT 57.028 37.500 0.00 0.00 0.00 1.28
67 68 8.645814 ATGTACTCCATCCGTTCACTATTATA 57.354 34.615 0.00 0.00 0.00 0.98
68 69 8.645814 TGTACTCCATCCGTTCACTATTATAT 57.354 34.615 0.00 0.00 0.00 0.86
69 70 9.743581 TGTACTCCATCCGTTCACTATTATATA 57.256 33.333 0.00 0.00 0.00 0.86
102 103 8.957466 TGGATATTTCTGTATGGACTAGATACG 58.043 37.037 0.00 0.00 0.00 3.06
103 104 8.407064 GGATATTTCTGTATGGACTAGATACGG 58.593 40.741 0.00 0.00 34.99 4.02
104 105 9.175312 GATATTTCTGTATGGACTAGATACGGA 57.825 37.037 0.00 2.09 39.08 4.69
105 106 6.630444 TTTCTGTATGGACTAGATACGGAC 57.370 41.667 9.89 0.00 40.06 4.79
106 107 5.563876 TCTGTATGGACTAGATACGGACT 57.436 43.478 0.00 0.00 36.96 3.85
107 108 5.306394 TCTGTATGGACTAGATACGGACTG 58.694 45.833 0.00 0.00 36.96 3.51
108 109 5.071384 TCTGTATGGACTAGATACGGACTGA 59.929 44.000 0.00 0.00 36.96 3.41
109 110 5.687780 TGTATGGACTAGATACGGACTGAA 58.312 41.667 0.00 0.00 0.00 3.02
110 111 6.124340 TGTATGGACTAGATACGGACTGAAA 58.876 40.000 0.00 0.00 0.00 2.69
111 112 6.776116 TGTATGGACTAGATACGGACTGAAAT 59.224 38.462 0.00 0.00 0.00 2.17
112 113 5.515797 TGGACTAGATACGGACTGAAATG 57.484 43.478 0.00 0.00 0.00 2.32
113 114 5.198207 TGGACTAGATACGGACTGAAATGA 58.802 41.667 0.00 0.00 0.00 2.57
114 115 5.655090 TGGACTAGATACGGACTGAAATGAA 59.345 40.000 0.00 0.00 0.00 2.57
115 116 6.153851 TGGACTAGATACGGACTGAAATGAAA 59.846 38.462 0.00 0.00 0.00 2.69
116 117 7.039882 GGACTAGATACGGACTGAAATGAAAA 58.960 38.462 0.00 0.00 0.00 2.29
117 118 7.711339 GGACTAGATACGGACTGAAATGAAAAT 59.289 37.037 0.00 0.00 0.00 1.82
118 119 8.425577 ACTAGATACGGACTGAAATGAAAATG 57.574 34.615 0.00 0.00 0.00 2.32
119 120 8.258007 ACTAGATACGGACTGAAATGAAAATGA 58.742 33.333 0.00 0.00 0.00 2.57
120 121 7.545362 AGATACGGACTGAAATGAAAATGAG 57.455 36.000 0.00 0.00 0.00 2.90
121 122 7.106239 AGATACGGACTGAAATGAAAATGAGT 58.894 34.615 0.00 0.00 0.00 3.41
122 123 5.362556 ACGGACTGAAATGAAAATGAGTG 57.637 39.130 0.00 0.00 0.00 3.51
123 124 5.063204 ACGGACTGAAATGAAAATGAGTGA 58.937 37.500 0.00 0.00 0.00 3.41
124 125 5.530915 ACGGACTGAAATGAAAATGAGTGAA 59.469 36.000 0.00 0.00 0.00 3.18
125 126 5.853282 CGGACTGAAATGAAAATGAGTGAAC 59.147 40.000 0.00 0.00 0.00 3.18
126 127 6.513230 CGGACTGAAATGAAAATGAGTGAACA 60.513 38.462 0.00 0.00 0.00 3.18
127 128 7.202526 GGACTGAAATGAAAATGAGTGAACAA 58.797 34.615 0.00 0.00 0.00 2.83
128 129 7.706179 GGACTGAAATGAAAATGAGTGAACAAA 59.294 33.333 0.00 0.00 0.00 2.83
129 130 8.411318 ACTGAAATGAAAATGAGTGAACAAAC 57.589 30.769 0.00 0.00 0.00 2.93
130 131 8.034215 ACTGAAATGAAAATGAGTGAACAAACA 58.966 29.630 0.00 0.00 0.00 2.83
131 132 8.183830 TGAAATGAAAATGAGTGAACAAACAC 57.816 30.769 0.00 0.00 40.60 3.32
132 133 7.816513 TGAAATGAAAATGAGTGAACAAACACA 59.183 29.630 0.00 0.00 42.45 3.72
133 134 7.524294 AATGAAAATGAGTGAACAAACACAC 57.476 32.000 0.00 0.00 42.45 3.82
135 136 7.384439 TGAAAATGAGTGAACAAACACACTA 57.616 32.000 0.00 0.00 45.54 2.74
136 137 7.821652 TGAAAATGAGTGAACAAACACACTAA 58.178 30.769 0.00 0.00 45.54 2.24
137 138 8.300286 TGAAAATGAGTGAACAAACACACTAAA 58.700 29.630 0.00 0.00 45.54 1.85
138 139 9.134734 GAAAATGAGTGAACAAACACACTAAAA 57.865 29.630 0.00 0.00 45.54 1.52
139 140 8.460831 AAATGAGTGAACAAACACACTAAAAC 57.539 30.769 0.00 0.00 45.54 2.43
140 141 6.561737 TGAGTGAACAAACACACTAAAACA 57.438 33.333 0.00 0.00 45.54 2.83
141 142 7.151999 TGAGTGAACAAACACACTAAAACAT 57.848 32.000 0.00 0.00 45.54 2.71
142 143 7.026562 TGAGTGAACAAACACACTAAAACATG 58.973 34.615 0.00 0.00 45.54 3.21
143 144 6.919721 AGTGAACAAACACACTAAAACATGT 58.080 32.000 0.00 0.00 44.06 3.21
144 145 7.027161 AGTGAACAAACACACTAAAACATGTC 58.973 34.615 0.00 0.00 44.06 3.06
145 146 7.027161 GTGAACAAACACACTAAAACATGTCT 58.973 34.615 0.00 0.00 40.11 3.41
146 147 8.178964 GTGAACAAACACACTAAAACATGTCTA 58.821 33.333 0.00 0.00 40.11 2.59
147 148 8.178964 TGAACAAACACACTAAAACATGTCTAC 58.821 33.333 0.00 0.00 0.00 2.59
148 149 7.618502 ACAAACACACTAAAACATGTCTACA 57.381 32.000 0.00 0.00 0.00 2.74
149 150 8.220755 ACAAACACACTAAAACATGTCTACAT 57.779 30.769 0.00 0.00 36.96 2.29
150 151 9.332502 ACAAACACACTAAAACATGTCTACATA 57.667 29.630 0.00 0.00 34.26 2.29
151 152 9.594038 CAAACACACTAAAACATGTCTACATAC 57.406 33.333 0.00 0.00 34.26 2.39
152 153 8.896320 AACACACTAAAACATGTCTACATACA 57.104 30.769 0.00 0.00 34.26 2.29
153 154 9.502091 AACACACTAAAACATGTCTACATACAT 57.498 29.630 0.00 0.00 40.75 2.29
154 155 9.151471 ACACACTAAAACATGTCTACATACATC 57.849 33.333 0.00 0.00 38.01 3.06
155 156 8.604035 CACACTAAAACATGTCTACATACATCC 58.396 37.037 0.00 0.00 38.01 3.51
156 157 8.318412 ACACTAAAACATGTCTACATACATCCA 58.682 33.333 0.00 0.00 38.01 3.41
157 158 9.161629 CACTAAAACATGTCTACATACATCCAA 57.838 33.333 0.00 0.00 38.01 3.53
158 159 9.905713 ACTAAAACATGTCTACATACATCCAAT 57.094 29.630 0.00 0.00 38.01 3.16
163 164 8.908786 ACATGTCTACATACATCCAATTTAGG 57.091 34.615 0.00 0.00 38.01 2.69
164 165 8.713971 ACATGTCTACATACATCCAATTTAGGA 58.286 33.333 0.00 0.00 38.01 2.94
165 166 9.559732 CATGTCTACATACATCCAATTTAGGAA 57.440 33.333 0.00 0.00 38.01 3.36
167 168 9.967451 TGTCTACATACATCCAATTTAGGAAAA 57.033 29.630 0.00 0.00 41.92 2.29
201 202 8.361139 AGAACATCTTATAATAGTGAACGGAGG 58.639 37.037 0.00 0.00 0.00 4.30
202 203 6.994221 ACATCTTATAATAGTGAACGGAGGG 58.006 40.000 0.00 0.00 0.00 4.30
203 204 6.781014 ACATCTTATAATAGTGAACGGAGGGA 59.219 38.462 0.00 0.00 0.00 4.20
204 205 6.896021 TCTTATAATAGTGAACGGAGGGAG 57.104 41.667 0.00 0.00 0.00 4.30
207 208 7.446625 TCTTATAATAGTGAACGGAGGGAGTAC 59.553 40.741 0.00 0.00 0.00 2.73
212 213 1.616865 TGAACGGAGGGAGTACTTGTG 59.383 52.381 0.00 0.00 0.00 3.33
239 241 5.995282 TGGAACTGACTGACGATAAACAAAT 59.005 36.000 0.00 0.00 0.00 2.32
301 303 3.033909 TCTGGTCTATGGATGTGGAGTG 58.966 50.000 0.00 0.00 0.00 3.51
308 310 0.691904 TGGATGTGGAGTGCATGTCA 59.308 50.000 0.00 0.00 0.00 3.58
310 312 1.674441 GGATGTGGAGTGCATGTCATG 59.326 52.381 8.56 8.56 0.00 3.07
313 315 1.348696 TGTGGAGTGCATGTCATGTCT 59.651 47.619 14.26 12.29 0.00 3.41
314 316 2.224597 TGTGGAGTGCATGTCATGTCTT 60.225 45.455 14.26 0.29 0.00 3.01
315 317 2.816087 GTGGAGTGCATGTCATGTCTTT 59.184 45.455 14.26 0.00 0.00 2.52
317 319 2.415090 GGAGTGCATGTCATGTCTTTGC 60.415 50.000 14.26 10.01 0.00 3.68
318 320 2.227149 GAGTGCATGTCATGTCTTTGCA 59.773 45.455 14.26 13.75 0.00 4.08
319 321 2.228103 AGTGCATGTCATGTCTTTGCAG 59.772 45.455 14.26 0.00 0.00 4.41
320 322 2.227149 GTGCATGTCATGTCTTTGCAGA 59.773 45.455 14.26 0.00 0.00 4.26
326 328 4.502016 TGTCATGTCTTTGCAGAGAGATC 58.498 43.478 13.33 5.27 28.08 2.75
391 393 1.207089 TCTGAATGAAGGTACCTGGCG 59.793 52.381 17.14 0.35 0.00 5.69
444 446 6.017192 ACAGGAGGAGAAAGTACAACTGATA 58.983 40.000 0.00 0.00 0.00 2.15
808 815 7.588497 ACAAGAGTTAGAAAAGGAATTTGCT 57.412 32.000 0.00 0.00 0.00 3.91
817 824 6.532826 AGAAAAGGAATTTGCTTGCCAATTA 58.467 32.000 3.76 0.00 32.49 1.40
819 826 7.666804 AGAAAAGGAATTTGCTTGCCAATTAAT 59.333 29.630 3.76 0.00 32.49 1.40
821 828 7.764141 AAGGAATTTGCTTGCCAATTAATTT 57.236 28.000 2.01 0.00 32.49 1.82
822 829 7.764141 AGGAATTTGCTTGCCAATTAATTTT 57.236 28.000 0.00 0.00 32.49 1.82
823 830 8.860780 AGGAATTTGCTTGCCAATTAATTTTA 57.139 26.923 0.00 0.00 32.49 1.52
824 831 9.294614 AGGAATTTGCTTGCCAATTAATTTTAA 57.705 25.926 0.00 0.00 32.49 1.52
858 865 6.668323 GCTGAACTTAATCTTAACAGCACAA 58.332 36.000 0.00 0.00 45.33 3.33
925 932 5.699097 TTTAAAACTGCATCCACCACTAC 57.301 39.130 0.00 0.00 0.00 2.73
954 961 4.659111 ATGGCCATTTACATGACATGTG 57.341 40.909 27.66 13.63 44.60 3.21
985 992 0.584876 GTAGTTGTGTGGTTCCACGC 59.415 55.000 23.48 23.48 44.76 5.34
1023 1030 0.901124 CTGCCTTGAGGTGCTACTCT 59.099 55.000 9.15 0.00 38.32 3.24
1062 1069 2.989571 AGTCCCAAGGAGGAAGATTTGT 59.010 45.455 0.00 0.00 41.22 2.83
1106 1113 1.815421 CCAGTTCCGAATCCAGGCG 60.815 63.158 0.00 0.00 0.00 5.52
1109 1116 2.165301 GTTCCGAATCCAGGCGACG 61.165 63.158 0.00 0.00 0.00 5.12
1132 1139 2.352814 GCTTCTAGTTCGGTCAGCTTCA 60.353 50.000 0.00 0.00 0.00 3.02
1190 1326 9.701098 CAAAAGCTATGGCATGTCAAATATAAT 57.299 29.630 10.98 0.00 41.70 1.28
1191 1327 9.701098 AAAAGCTATGGCATGTCAAATATAATG 57.299 29.630 10.98 0.00 41.70 1.90
1192 1328 7.400599 AGCTATGGCATGTCAAATATAATGG 57.599 36.000 10.98 0.00 41.70 3.16
1195 1331 7.094248 GCTATGGCATGTCAAATATAATGGTGA 60.094 37.037 10.98 0.00 38.54 4.02
1227 1363 6.532302 TGTAACTATGTTAGCATGTAACACCG 59.468 38.462 17.44 14.43 39.83 4.94
1252 1388 6.983890 GCTGTTTTTGGTAATCTGAAGGAAAA 59.016 34.615 0.00 0.00 0.00 2.29
1320 1456 5.347342 CATCCTCTGTTACACTGATGAGAC 58.653 45.833 7.73 0.00 33.20 3.36
1331 1467 3.126514 CACTGATGAGACTGGTGAATTGC 59.873 47.826 0.00 0.00 0.00 3.56
1367 1503 0.609957 TGAAGGCCCGAGACTAACGA 60.610 55.000 0.00 0.00 0.00 3.85
1371 1507 2.707849 GCCCGAGACTAACGAGGCA 61.708 63.158 0.00 0.00 42.23 4.75
1378 1514 4.261656 CCGAGACTAACGAGGCAAGATATT 60.262 45.833 0.00 0.00 30.20 1.28
1411 1553 6.720288 TGACCCAAGAGAGGTAAGCTATATAC 59.280 42.308 0.00 0.00 37.88 1.47
1590 1734 3.492311 GATCGACTGGAGCGGCCTC 62.492 68.421 0.00 0.00 37.63 4.70
1648 1792 1.090728 GCTGACTTCAAGCTTAGCCC 58.909 55.000 0.00 0.00 0.00 5.19
1666 1855 0.037326 CCTGTAGAAACGCTGGCTGA 60.037 55.000 0.00 0.00 0.00 4.26
1693 1882 6.491745 ACTGTTATGTGTAGATCGATCTCCAT 59.508 38.462 30.49 27.44 38.32 3.41
1724 1917 3.182572 GCTTGCTCGATCCGTAATAAGTG 59.817 47.826 0.00 0.00 0.00 3.16
1749 1942 6.154021 GTCTTATGTGTGTAGGTAGGAAGGAA 59.846 42.308 0.00 0.00 0.00 3.36
1750 1943 6.380274 TCTTATGTGTGTAGGTAGGAAGGAAG 59.620 42.308 0.00 0.00 0.00 3.46
1751 1944 3.170717 TGTGTGTAGGTAGGAAGGAAGG 58.829 50.000 0.00 0.00 0.00 3.46
1752 1945 3.181415 TGTGTGTAGGTAGGAAGGAAGGA 60.181 47.826 0.00 0.00 0.00 3.36
1760 1953 3.389656 GGTAGGAAGGAAGGATTGGAGAG 59.610 52.174 0.00 0.00 0.00 3.20
1855 2049 3.546271 CACTGCAAATTCATGCTGATTCG 59.454 43.478 13.89 0.00 46.54 3.34
1916 2110 0.681175 ATTTGCTCCAAGGGTGTTGC 59.319 50.000 0.00 0.00 0.00 4.17
1920 2114 1.527433 GCTCCAAGGGTGTTGCCTTC 61.527 60.000 0.00 0.00 37.43 3.46
1921 2115 0.178992 CTCCAAGGGTGTTGCCTTCA 60.179 55.000 0.00 0.00 37.43 3.02
1925 2119 2.289010 CCAAGGGTGTTGCCTTCAATTC 60.289 50.000 0.00 0.00 37.43 2.17
1933 2127 1.035923 TGCCTTCAATTCGGTTTGCA 58.964 45.000 0.00 0.00 0.00 4.08
1993 2187 0.451783 GTAAGCGCCCAATTCTGGTG 59.548 55.000 2.29 0.58 41.72 4.17
2008 2202 1.154150 GGTGCAGATCAAGCAACGC 60.154 57.895 13.52 3.26 44.64 4.84
2025 2220 4.100529 CAACGCTTCCAGCAAATAATCTG 58.899 43.478 0.00 0.00 42.58 2.90
2028 2223 4.572389 ACGCTTCCAGCAAATAATCTGTAG 59.428 41.667 0.00 0.00 42.58 2.74
2029 2224 4.811024 CGCTTCCAGCAAATAATCTGTAGA 59.189 41.667 0.00 0.00 42.58 2.59
2052 2247 3.317711 TGAAAAATGTCAAGCACGTGGAT 59.682 39.130 18.88 0.00 0.00 3.41
2060 2255 0.179032 AAGCACGTGGATTGTGGTGA 60.179 50.000 18.88 0.00 46.43 4.02
2062 2257 0.168788 GCACGTGGATTGTGGTGATG 59.831 55.000 18.88 0.00 37.80 3.07
2063 2258 1.807139 CACGTGGATTGTGGTGATGA 58.193 50.000 7.95 0.00 33.69 2.92
2079 2294 7.044181 GTGGTGATGAATGATGTTTAGAGAGA 58.956 38.462 0.00 0.00 0.00 3.10
2087 2302 7.332926 TGAATGATGTTTAGAGAGAAGCTTGAC 59.667 37.037 2.10 0.00 0.00 3.18
2090 2306 5.791336 TGTTTAGAGAGAAGCTTGACTCA 57.209 39.130 22.84 11.81 35.83 3.41
2097 2313 3.640967 AGAGAAGCTTGACTCAGTTCTGT 59.359 43.478 2.10 0.00 35.83 3.41
2105 2321 6.258947 AGCTTGACTCAGTTCTGTTTAAGTTC 59.741 38.462 0.00 0.00 0.00 3.01
2107 2323 7.254932 GCTTGACTCAGTTCTGTTTAAGTTCAT 60.255 37.037 0.00 0.00 0.00 2.57
2108 2324 9.261180 CTTGACTCAGTTCTGTTTAAGTTCATA 57.739 33.333 0.00 0.00 0.00 2.15
2109 2325 8.818141 TGACTCAGTTCTGTTTAAGTTCATAG 57.182 34.615 0.00 0.00 0.00 2.23
2111 2327 6.651225 ACTCAGTTCTGTTTAAGTTCATAGCC 59.349 38.462 0.00 0.00 0.00 3.93
2112 2328 6.530120 TCAGTTCTGTTTAAGTTCATAGCCA 58.470 36.000 0.00 0.00 0.00 4.75
2113 2329 6.995686 TCAGTTCTGTTTAAGTTCATAGCCAA 59.004 34.615 0.00 0.00 0.00 4.52
2115 2331 6.998673 AGTTCTGTTTAAGTTCATAGCCAAGT 59.001 34.615 0.00 0.00 0.00 3.16
2116 2332 7.502561 AGTTCTGTTTAAGTTCATAGCCAAGTT 59.497 33.333 0.00 0.00 0.00 2.66
2119 2335 6.966021 TGTTTAAGTTCATAGCCAAGTTCAC 58.034 36.000 0.00 0.00 0.00 3.18
2120 2336 6.770785 TGTTTAAGTTCATAGCCAAGTTCACT 59.229 34.615 0.00 0.00 0.00 3.41
2121 2337 7.041372 TGTTTAAGTTCATAGCCAAGTTCACTC 60.041 37.037 0.00 0.00 0.00 3.51
2122 2338 4.623932 AGTTCATAGCCAAGTTCACTCA 57.376 40.909 0.00 0.00 0.00 3.41
2125 2341 3.273434 TCATAGCCAAGTTCACTCATGC 58.727 45.455 0.00 0.00 0.00 4.06
2126 2342 2.857186 TAGCCAAGTTCACTCATGCA 57.143 45.000 0.00 0.00 0.00 3.96
2154 2405 5.220710 ACAAGTGTGAGAAATACTCTGCT 57.779 39.130 0.00 0.00 45.13 4.24
2155 2406 5.233988 ACAAGTGTGAGAAATACTCTGCTC 58.766 41.667 0.00 0.00 45.13 4.26
2156 2407 5.011533 ACAAGTGTGAGAAATACTCTGCTCT 59.988 40.000 0.00 0.00 45.13 4.09
2157 2408 5.070770 AGTGTGAGAAATACTCTGCTCTG 57.929 43.478 0.00 0.00 45.13 3.35
2158 2409 3.616379 GTGTGAGAAATACTCTGCTCTGC 59.384 47.826 0.00 0.00 45.13 4.26
2159 2410 3.513119 TGTGAGAAATACTCTGCTCTGCT 59.487 43.478 0.00 0.00 45.13 4.24
2179 2430 1.885887 TGTCTCTTTGCCAAATTCCCG 59.114 47.619 0.00 0.00 0.00 5.14
2221 2474 3.684305 CACCATGTTCAGATTTGCTCGTA 59.316 43.478 0.00 0.00 0.00 3.43
2224 2477 5.065218 ACCATGTTCAGATTTGCTCGTATTC 59.935 40.000 0.00 0.00 0.00 1.75
2225 2478 5.065090 CCATGTTCAGATTTGCTCGTATTCA 59.935 40.000 0.00 0.00 0.00 2.57
2226 2479 6.238566 CCATGTTCAGATTTGCTCGTATTCAT 60.239 38.462 0.00 0.00 0.00 2.57
2227 2480 6.349973 TGTTCAGATTTGCTCGTATTCATC 57.650 37.500 0.00 0.00 0.00 2.92
2228 2481 6.108687 TGTTCAGATTTGCTCGTATTCATCT 58.891 36.000 0.00 0.00 0.00 2.90
2229 2482 6.036408 TGTTCAGATTTGCTCGTATTCATCTG 59.964 38.462 0.00 0.00 39.25 2.90
2230 2483 5.906073 TCAGATTTGCTCGTATTCATCTGA 58.094 37.500 12.33 12.33 42.68 3.27
2231 2484 6.519382 TCAGATTTGCTCGTATTCATCTGAT 58.481 36.000 12.33 0.00 40.96 2.90
2232 2485 7.661040 TCAGATTTGCTCGTATTCATCTGATA 58.339 34.615 12.33 0.00 40.96 2.15
2275 2531 4.442609 AAGTTGCCACTGAGCGTTTTCG 62.443 50.000 0.00 0.00 38.83 3.46
2346 2602 1.065701 CGACCTCAGGATAACTCACGG 59.934 57.143 0.00 0.00 0.00 4.94
2349 2605 2.496470 ACCTCAGGATAACTCACGGTTC 59.504 50.000 0.00 0.00 39.17 3.62
2399 2656 2.485795 CCACCACCCCGTTGTTGTG 61.486 63.158 0.44 0.44 33.07 3.33
2400 2657 2.831284 ACCACCCCGTTGTTGTGC 60.831 61.111 0.00 0.00 0.00 4.57
2404 2661 0.816018 CACCCCGTTGTTGTGCTACA 60.816 55.000 0.00 0.00 0.00 2.74
2426 2683 5.240623 ACAAGCGAAACAATCATCCTTGTTA 59.759 36.000 2.91 0.00 45.98 2.41
2457 2714 7.439356 CAGGACCATACAAATCACTACATACAG 59.561 40.741 0.00 0.00 0.00 2.74
2458 2715 7.125811 AGGACCATACAAATCACTACATACAGT 59.874 37.037 0.00 0.00 0.00 3.55
2459 2716 8.418662 GGACCATACAAATCACTACATACAGTA 58.581 37.037 0.00 0.00 0.00 2.74
2460 2717 9.811995 GACCATACAAATCACTACATACAGTAA 57.188 33.333 0.00 0.00 30.92 2.24
2461 2718 9.817809 ACCATACAAATCACTACATACAGTAAG 57.182 33.333 0.00 0.00 30.92 2.34
2462 2719 9.817809 CCATACAAATCACTACATACAGTAAGT 57.182 33.333 0.00 0.00 30.92 2.24
2480 2737 7.098074 AGTAAGTATACTGTAACAGACCAGC 57.902 40.000 6.06 0.00 40.88 4.85
2481 2738 5.995565 AAGTATACTGTAACAGACCAGCA 57.004 39.130 6.06 0.00 35.18 4.41
2482 2739 5.326200 AGTATACTGTAACAGACCAGCAC 57.674 43.478 4.10 0.00 35.18 4.40
2483 2740 2.717580 TACTGTAACAGACCAGCACG 57.282 50.000 0.00 0.00 35.18 5.34
2484 2741 1.037493 ACTGTAACAGACCAGCACGA 58.963 50.000 0.00 0.00 35.18 4.35
2485 2742 1.618837 ACTGTAACAGACCAGCACGAT 59.381 47.619 0.00 0.00 35.18 3.73
2486 2743 1.995484 CTGTAACAGACCAGCACGATG 59.005 52.381 0.00 0.00 32.44 3.84
2487 2744 0.721718 GTAACAGACCAGCACGATGC 59.278 55.000 0.00 0.00 45.46 3.91
2498 2755 2.336554 GCACGATGCACAAGATTTGT 57.663 45.000 0.00 0.00 44.26 2.83
2499 2756 3.469899 GCACGATGCACAAGATTTGTA 57.530 42.857 0.00 0.00 44.26 2.41
2500 2757 3.820689 GCACGATGCACAAGATTTGTAA 58.179 40.909 0.00 0.00 44.26 2.41
2501 2758 4.414852 GCACGATGCACAAGATTTGTAAT 58.585 39.130 0.00 0.00 44.26 1.89
2502 2759 4.496895 GCACGATGCACAAGATTTGTAATC 59.503 41.667 0.00 1.60 44.26 1.75
2503 2760 5.030295 CACGATGCACAAGATTTGTAATCC 58.970 41.667 0.00 0.00 43.23 3.01
2504 2761 4.699735 ACGATGCACAAGATTTGTAATCCA 59.300 37.500 0.00 0.00 43.23 3.41
2505 2762 5.182950 ACGATGCACAAGATTTGTAATCCAA 59.817 36.000 0.00 0.00 43.23 3.53
2506 2763 6.092092 CGATGCACAAGATTTGTAATCCAAA 58.908 36.000 0.00 0.00 46.59 3.28
2507 2764 6.585702 CGATGCACAAGATTTGTAATCCAAAA 59.414 34.615 0.00 0.00 45.72 2.44
2508 2765 7.410728 CGATGCACAAGATTTGTAATCCAAAAC 60.411 37.037 0.00 0.00 45.72 2.43
2509 2766 6.577103 TGCACAAGATTTGTAATCCAAAACA 58.423 32.000 0.00 0.00 45.72 2.83
2510 2767 7.044181 TGCACAAGATTTGTAATCCAAAACAA 58.956 30.769 0.00 0.00 45.72 2.83
2511 2768 7.714377 TGCACAAGATTTGTAATCCAAAACAAT 59.286 29.630 0.00 0.00 45.72 2.71
2512 2769 9.202273 GCACAAGATTTGTAATCCAAAACAATA 57.798 29.630 0.00 0.00 45.72 1.90
2517 2774 9.927668 AGATTTGTAATCCAAAACAATAAGGTG 57.072 29.630 0.00 0.00 45.72 4.00
2518 2775 9.705290 GATTTGTAATCCAAAACAATAAGGTGT 57.295 29.630 0.00 0.00 45.72 4.16
2519 2776 8.879342 TTTGTAATCCAAAACAATAAGGTGTG 57.121 30.769 0.00 0.00 40.05 3.82
2520 2777 6.451393 TGTAATCCAAAACAATAAGGTGTGC 58.549 36.000 0.00 0.00 0.00 4.57
2521 2778 5.543507 AATCCAAAACAATAAGGTGTGCA 57.456 34.783 0.00 0.00 0.00 4.57
2522 2779 5.743636 ATCCAAAACAATAAGGTGTGCAT 57.256 34.783 0.00 0.00 0.00 3.96
2523 2780 5.132897 TCCAAAACAATAAGGTGTGCATC 57.867 39.130 0.00 0.00 0.00 3.91
2524 2781 4.586421 TCCAAAACAATAAGGTGTGCATCA 59.414 37.500 0.00 0.00 0.00 3.07
2525 2782 5.069648 TCCAAAACAATAAGGTGTGCATCAA 59.930 36.000 0.00 0.00 0.00 2.57
2526 2783 5.406175 CCAAAACAATAAGGTGTGCATCAAG 59.594 40.000 0.00 0.00 0.00 3.02
2527 2784 4.789012 AACAATAAGGTGTGCATCAAGG 57.211 40.909 0.00 0.00 0.00 3.61
2528 2785 3.091545 ACAATAAGGTGTGCATCAAGGG 58.908 45.455 0.00 0.00 0.00 3.95
2529 2786 1.767759 ATAAGGTGTGCATCAAGGGC 58.232 50.000 0.00 0.00 0.00 5.19
2530 2787 0.403655 TAAGGTGTGCATCAAGGGCA 59.596 50.000 0.00 0.00 39.32 5.36
2531 2788 0.896940 AAGGTGTGCATCAAGGGCAG 60.897 55.000 0.00 0.00 42.85 4.85
2532 2789 1.303561 GGTGTGCATCAAGGGCAGA 60.304 57.895 0.00 0.00 42.85 4.26
2533 2790 1.310933 GGTGTGCATCAAGGGCAGAG 61.311 60.000 0.00 0.00 42.85 3.35
2534 2791 1.676635 TGTGCATCAAGGGCAGAGC 60.677 57.895 0.00 0.00 42.85 4.09
2546 2803 4.803426 CAGAGCCTCGCGGTGTCC 62.803 72.222 6.13 0.00 0.00 4.02
2563 2820 4.293648 CACGTCGGCAGGGTGTGA 62.294 66.667 0.00 0.00 32.39 3.58
2564 2821 4.295119 ACGTCGGCAGGGTGTGAC 62.295 66.667 0.00 0.00 0.00 3.67
2565 2822 3.991051 CGTCGGCAGGGTGTGACT 61.991 66.667 0.00 0.00 27.93 3.41
2566 2823 2.357517 GTCGGCAGGGTGTGACTG 60.358 66.667 0.00 0.00 38.95 3.51
2567 2824 2.842462 TCGGCAGGGTGTGACTGT 60.842 61.111 0.00 0.00 38.22 3.55
2568 2825 2.111043 CGGCAGGGTGTGACTGTT 59.889 61.111 0.00 0.00 38.22 3.16
2569 2826 1.525995 CGGCAGGGTGTGACTGTTT 60.526 57.895 0.00 0.00 38.22 2.83
2570 2827 1.785041 CGGCAGGGTGTGACTGTTTG 61.785 60.000 0.00 0.00 38.22 2.93
2571 2828 1.360192 GCAGGGTGTGACTGTTTGC 59.640 57.895 0.00 0.00 38.22 3.68
2572 2829 1.648720 CAGGGTGTGACTGTTTGCG 59.351 57.895 0.00 0.00 0.00 4.85
2573 2830 0.813610 CAGGGTGTGACTGTTTGCGA 60.814 55.000 0.00 0.00 0.00 5.10
2574 2831 0.108585 AGGGTGTGACTGTTTGCGAT 59.891 50.000 0.00 0.00 0.00 4.58
2575 2832 0.238289 GGGTGTGACTGTTTGCGATG 59.762 55.000 0.00 0.00 0.00 3.84
2576 2833 0.238289 GGTGTGACTGTTTGCGATGG 59.762 55.000 0.00 0.00 0.00 3.51
2577 2834 0.385974 GTGTGACTGTTTGCGATGGC 60.386 55.000 0.00 0.00 40.52 4.40
2578 2835 1.210155 GTGACTGTTTGCGATGGCC 59.790 57.895 0.00 0.00 38.85 5.36
2579 2836 1.228094 TGACTGTTTGCGATGGCCA 60.228 52.632 8.56 8.56 38.85 5.36
2580 2837 0.821301 TGACTGTTTGCGATGGCCAA 60.821 50.000 10.96 0.00 38.85 4.52
2581 2838 0.527565 GACTGTTTGCGATGGCCAAT 59.472 50.000 10.96 0.00 38.85 3.16
2582 2839 0.968405 ACTGTTTGCGATGGCCAATT 59.032 45.000 10.96 0.00 38.85 2.32
2583 2840 1.337074 ACTGTTTGCGATGGCCAATTG 60.337 47.619 10.96 3.21 38.85 2.32
2584 2841 0.964700 TGTTTGCGATGGCCAATTGA 59.035 45.000 10.96 0.00 38.85 2.57
2585 2842 1.342496 TGTTTGCGATGGCCAATTGAA 59.658 42.857 10.96 0.00 38.85 2.69
2586 2843 1.994779 GTTTGCGATGGCCAATTGAAG 59.005 47.619 10.96 0.00 38.85 3.02
2587 2844 0.108709 TTGCGATGGCCAATTGAAGC 60.109 50.000 10.96 9.98 38.85 3.86
2588 2845 1.587088 GCGATGGCCAATTGAAGCG 60.587 57.895 10.96 0.00 0.00 4.68
2589 2846 1.992233 GCGATGGCCAATTGAAGCGA 61.992 55.000 10.96 0.00 0.00 4.93
2590 2847 0.248215 CGATGGCCAATTGAAGCGAC 60.248 55.000 10.96 0.00 0.00 5.19
2591 2848 0.248215 GATGGCCAATTGAAGCGACG 60.248 55.000 10.96 0.00 0.00 5.12
2592 2849 1.656818 ATGGCCAATTGAAGCGACGG 61.657 55.000 10.96 0.00 0.00 4.79
2593 2850 2.332654 GGCCAATTGAAGCGACGGT 61.333 57.895 7.12 0.00 0.00 4.83
2594 2851 1.134694 GCCAATTGAAGCGACGGTC 59.865 57.895 7.12 0.00 0.00 4.79
2595 2852 1.794222 CCAATTGAAGCGACGGTCC 59.206 57.895 7.12 0.00 0.00 4.46
2596 2853 1.419922 CAATTGAAGCGACGGTCCG 59.580 57.895 10.48 10.48 0.00 4.79
2604 2861 2.504244 CGACGGTCCGCACTTCTC 60.504 66.667 12.28 0.00 0.00 2.87
2605 2862 2.504244 GACGGTCCGCACTTCTCG 60.504 66.667 12.28 0.00 0.00 4.04
2606 2863 3.264866 GACGGTCCGCACTTCTCGT 62.265 63.158 12.28 0.00 0.00 4.18
2607 2864 2.049433 CGGTCCGCACTTCTCGTT 60.049 61.111 0.00 0.00 0.00 3.85
2608 2865 1.663702 CGGTCCGCACTTCTCGTTT 60.664 57.895 0.00 0.00 0.00 3.60
2609 2866 1.860078 GGTCCGCACTTCTCGTTTG 59.140 57.895 0.00 0.00 0.00 2.93
2610 2867 1.204312 GTCCGCACTTCTCGTTTGC 59.796 57.895 0.00 0.00 0.00 3.68
2611 2868 1.069090 TCCGCACTTCTCGTTTGCT 59.931 52.632 0.00 0.00 33.90 3.91
2612 2869 0.531974 TCCGCACTTCTCGTTTGCTT 60.532 50.000 0.00 0.00 33.90 3.91
2613 2870 0.307760 CCGCACTTCTCGTTTGCTTT 59.692 50.000 0.00 0.00 33.90 3.51
2614 2871 1.529438 CCGCACTTCTCGTTTGCTTTA 59.471 47.619 0.00 0.00 33.90 1.85
2615 2872 2.159627 CCGCACTTCTCGTTTGCTTTAT 59.840 45.455 0.00 0.00 33.90 1.40
2616 2873 3.408150 CGCACTTCTCGTTTGCTTTATC 58.592 45.455 0.00 0.00 33.90 1.75
2617 2874 3.408150 GCACTTCTCGTTTGCTTTATCG 58.592 45.455 0.00 0.00 33.26 2.92
2618 2875 3.122948 GCACTTCTCGTTTGCTTTATCGA 59.877 43.478 0.00 0.00 33.26 3.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 8.957466 CGTATCTAGTCCATACAGAAATATCCA 58.043 37.037 0.00 0.00 0.00 3.41
77 78 8.407064 CCGTATCTAGTCCATACAGAAATATCC 58.593 40.741 0.00 0.00 0.00 2.59
78 79 9.175312 TCCGTATCTAGTCCATACAGAAATATC 57.825 37.037 0.00 0.00 0.00 1.63
79 80 8.958506 GTCCGTATCTAGTCCATACAGAAATAT 58.041 37.037 0.00 0.00 0.00 1.28
80 81 8.162085 AGTCCGTATCTAGTCCATACAGAAATA 58.838 37.037 0.00 0.00 0.00 1.40
81 82 7.005296 AGTCCGTATCTAGTCCATACAGAAAT 58.995 38.462 0.00 0.00 0.00 2.17
82 83 6.262496 CAGTCCGTATCTAGTCCATACAGAAA 59.738 42.308 0.00 0.00 0.00 2.52
83 84 5.763698 CAGTCCGTATCTAGTCCATACAGAA 59.236 44.000 0.00 0.00 0.00 3.02
84 85 5.071384 TCAGTCCGTATCTAGTCCATACAGA 59.929 44.000 0.00 0.00 0.00 3.41
85 86 5.306394 TCAGTCCGTATCTAGTCCATACAG 58.694 45.833 0.00 0.00 0.00 2.74
86 87 5.300411 TCAGTCCGTATCTAGTCCATACA 57.700 43.478 0.00 0.00 0.00 2.29
87 88 6.630444 TTTCAGTCCGTATCTAGTCCATAC 57.370 41.667 0.00 0.00 0.00 2.39
88 89 7.002276 TCATTTCAGTCCGTATCTAGTCCATA 58.998 38.462 0.00 0.00 0.00 2.74
89 90 5.833667 TCATTTCAGTCCGTATCTAGTCCAT 59.166 40.000 0.00 0.00 0.00 3.41
90 91 5.198207 TCATTTCAGTCCGTATCTAGTCCA 58.802 41.667 0.00 0.00 0.00 4.02
91 92 5.769484 TCATTTCAGTCCGTATCTAGTCC 57.231 43.478 0.00 0.00 0.00 3.85
92 93 8.543774 CATTTTCATTTCAGTCCGTATCTAGTC 58.456 37.037 0.00 0.00 0.00 2.59
93 94 8.258007 TCATTTTCATTTCAGTCCGTATCTAGT 58.742 33.333 0.00 0.00 0.00 2.57
94 95 8.648557 TCATTTTCATTTCAGTCCGTATCTAG 57.351 34.615 0.00 0.00 0.00 2.43
95 96 8.258007 ACTCATTTTCATTTCAGTCCGTATCTA 58.742 33.333 0.00 0.00 0.00 1.98
96 97 7.065085 CACTCATTTTCATTTCAGTCCGTATCT 59.935 37.037 0.00 0.00 0.00 1.98
97 98 7.064609 TCACTCATTTTCATTTCAGTCCGTATC 59.935 37.037 0.00 0.00 0.00 2.24
98 99 6.878923 TCACTCATTTTCATTTCAGTCCGTAT 59.121 34.615 0.00 0.00 0.00 3.06
99 100 6.227522 TCACTCATTTTCATTTCAGTCCGTA 58.772 36.000 0.00 0.00 0.00 4.02
100 101 5.063204 TCACTCATTTTCATTTCAGTCCGT 58.937 37.500 0.00 0.00 0.00 4.69
101 102 5.611796 TCACTCATTTTCATTTCAGTCCG 57.388 39.130 0.00 0.00 0.00 4.79
102 103 6.738114 TGTTCACTCATTTTCATTTCAGTCC 58.262 36.000 0.00 0.00 0.00 3.85
103 104 8.534778 GTTTGTTCACTCATTTTCATTTCAGTC 58.465 33.333 0.00 0.00 0.00 3.51
104 105 8.034215 TGTTTGTTCACTCATTTTCATTTCAGT 58.966 29.630 0.00 0.00 0.00 3.41
105 106 8.323140 GTGTTTGTTCACTCATTTTCATTTCAG 58.677 33.333 0.00 0.00 35.68 3.02
106 107 7.816513 TGTGTTTGTTCACTCATTTTCATTTCA 59.183 29.630 0.00 0.00 38.90 2.69
107 108 8.110002 GTGTGTTTGTTCACTCATTTTCATTTC 58.890 33.333 0.00 0.00 38.90 2.17
108 109 7.818930 AGTGTGTTTGTTCACTCATTTTCATTT 59.181 29.630 0.00 0.00 40.28 2.32
109 110 7.322664 AGTGTGTTTGTTCACTCATTTTCATT 58.677 30.769 0.00 0.00 40.28 2.57
110 111 6.866480 AGTGTGTTTGTTCACTCATTTTCAT 58.134 32.000 0.00 0.00 40.28 2.57
111 112 6.266168 AGTGTGTTTGTTCACTCATTTTCA 57.734 33.333 0.00 0.00 40.28 2.69
112 113 8.682128 TTTAGTGTGTTTGTTCACTCATTTTC 57.318 30.769 1.08 0.00 42.77 2.29
113 114 8.921670 GTTTTAGTGTGTTTGTTCACTCATTTT 58.078 29.630 1.08 0.00 42.77 1.82
114 115 8.085296 TGTTTTAGTGTGTTTGTTCACTCATTT 58.915 29.630 1.08 0.00 42.77 2.32
115 116 7.598278 TGTTTTAGTGTGTTTGTTCACTCATT 58.402 30.769 1.08 0.00 42.77 2.57
116 117 7.151999 TGTTTTAGTGTGTTTGTTCACTCAT 57.848 32.000 1.08 0.00 42.77 2.90
117 118 6.561737 TGTTTTAGTGTGTTTGTTCACTCA 57.438 33.333 1.08 0.00 42.77 3.41
118 119 7.027161 ACATGTTTTAGTGTGTTTGTTCACTC 58.973 34.615 0.00 0.00 42.77 3.51
119 120 6.919721 ACATGTTTTAGTGTGTTTGTTCACT 58.080 32.000 0.00 0.00 45.21 3.41
120 121 7.027161 AGACATGTTTTAGTGTGTTTGTTCAC 58.973 34.615 0.00 0.00 38.63 3.18
121 122 7.151999 AGACATGTTTTAGTGTGTTTGTTCA 57.848 32.000 0.00 0.00 0.00 3.18
122 123 8.178964 TGTAGACATGTTTTAGTGTGTTTGTTC 58.821 33.333 0.00 0.00 0.00 3.18
123 124 8.046294 TGTAGACATGTTTTAGTGTGTTTGTT 57.954 30.769 0.00 0.00 0.00 2.83
124 125 7.618502 TGTAGACATGTTTTAGTGTGTTTGT 57.381 32.000 0.00 0.00 0.00 2.83
125 126 9.594038 GTATGTAGACATGTTTTAGTGTGTTTG 57.406 33.333 0.00 0.00 37.15 2.93
126 127 9.332502 TGTATGTAGACATGTTTTAGTGTGTTT 57.667 29.630 0.00 0.00 37.15 2.83
127 128 8.896320 TGTATGTAGACATGTTTTAGTGTGTT 57.104 30.769 0.00 0.00 37.15 3.32
128 129 9.151471 GATGTATGTAGACATGTTTTAGTGTGT 57.849 33.333 0.00 0.00 40.18 3.72
129 130 8.604035 GGATGTATGTAGACATGTTTTAGTGTG 58.396 37.037 0.00 0.00 40.18 3.82
130 131 8.318412 TGGATGTATGTAGACATGTTTTAGTGT 58.682 33.333 0.00 0.00 40.18 3.55
131 132 8.716646 TGGATGTATGTAGACATGTTTTAGTG 57.283 34.615 0.00 0.00 40.18 2.74
132 133 9.905713 ATTGGATGTATGTAGACATGTTTTAGT 57.094 29.630 0.00 0.00 40.18 2.24
137 138 9.342308 CCTAAATTGGATGTATGTAGACATGTT 57.658 33.333 0.00 0.00 40.18 2.71
138 139 8.713971 TCCTAAATTGGATGTATGTAGACATGT 58.286 33.333 0.00 0.00 40.18 3.21
139 140 9.559732 TTCCTAAATTGGATGTATGTAGACATG 57.440 33.333 5.39 0.00 40.18 3.21
141 142 9.967451 TTTTCCTAAATTGGATGTATGTAGACA 57.033 29.630 0.00 0.00 35.83 3.41
175 176 8.361139 CCTCCGTTCACTATTATAAGATGTTCT 58.639 37.037 0.00 0.00 0.00 3.01
176 177 7.599245 CCCTCCGTTCACTATTATAAGATGTTC 59.401 40.741 0.00 0.00 0.00 3.18
177 178 7.289317 TCCCTCCGTTCACTATTATAAGATGTT 59.711 37.037 0.00 0.00 0.00 2.71
178 179 6.781014 TCCCTCCGTTCACTATTATAAGATGT 59.219 38.462 0.00 0.00 0.00 3.06
179 180 7.039644 ACTCCCTCCGTTCACTATTATAAGATG 60.040 40.741 0.00 0.00 0.00 2.90
180 181 7.011382 ACTCCCTCCGTTCACTATTATAAGAT 58.989 38.462 0.00 0.00 0.00 2.40
181 182 6.371278 ACTCCCTCCGTTCACTATTATAAGA 58.629 40.000 0.00 0.00 0.00 2.10
182 183 6.651975 ACTCCCTCCGTTCACTATTATAAG 57.348 41.667 0.00 0.00 0.00 1.73
183 184 7.293073 AGTACTCCCTCCGTTCACTATTATAA 58.707 38.462 0.00 0.00 0.00 0.98
184 185 6.845908 AGTACTCCCTCCGTTCACTATTATA 58.154 40.000 0.00 0.00 0.00 0.98
185 186 5.703310 AGTACTCCCTCCGTTCACTATTAT 58.297 41.667 0.00 0.00 0.00 1.28
186 187 5.121380 AGTACTCCCTCCGTTCACTATTA 57.879 43.478 0.00 0.00 0.00 0.98
187 188 3.978610 AGTACTCCCTCCGTTCACTATT 58.021 45.455 0.00 0.00 0.00 1.73
188 189 3.666345 AGTACTCCCTCCGTTCACTAT 57.334 47.619 0.00 0.00 0.00 2.12
189 190 3.087031 CAAGTACTCCCTCCGTTCACTA 58.913 50.000 0.00 0.00 0.00 2.74
190 191 1.893801 CAAGTACTCCCTCCGTTCACT 59.106 52.381 0.00 0.00 0.00 3.41
191 192 1.617357 ACAAGTACTCCCTCCGTTCAC 59.383 52.381 0.00 0.00 0.00 3.18
192 193 1.616865 CACAAGTACTCCCTCCGTTCA 59.383 52.381 0.00 0.00 0.00 3.18
193 194 1.617357 ACACAAGTACTCCCTCCGTTC 59.383 52.381 0.00 0.00 0.00 3.95
194 195 1.617357 GACACAAGTACTCCCTCCGTT 59.383 52.381 0.00 0.00 0.00 4.44
195 196 1.203025 AGACACAAGTACTCCCTCCGT 60.203 52.381 0.00 0.00 0.00 4.69
196 197 1.202582 CAGACACAAGTACTCCCTCCG 59.797 57.143 0.00 0.00 0.00 4.63
197 198 1.550976 CCAGACACAAGTACTCCCTCC 59.449 57.143 0.00 0.00 0.00 4.30
198 199 2.526432 TCCAGACACAAGTACTCCCTC 58.474 52.381 0.00 0.00 0.00 4.30
199 200 2.633481 GTTCCAGACACAAGTACTCCCT 59.367 50.000 0.00 0.00 0.00 4.20
200 201 2.633481 AGTTCCAGACACAAGTACTCCC 59.367 50.000 0.00 0.00 0.00 4.30
201 202 3.321111 TCAGTTCCAGACACAAGTACTCC 59.679 47.826 0.00 0.00 0.00 3.85
202 203 4.038162 AGTCAGTTCCAGACACAAGTACTC 59.962 45.833 0.00 0.00 38.46 2.59
203 204 3.961408 AGTCAGTTCCAGACACAAGTACT 59.039 43.478 0.00 0.00 38.46 2.73
204 205 4.051922 CAGTCAGTTCCAGACACAAGTAC 58.948 47.826 0.00 0.00 38.46 2.73
207 208 3.126831 GTCAGTCAGTTCCAGACACAAG 58.873 50.000 0.00 0.00 38.46 3.16
212 213 4.436242 TTATCGTCAGTCAGTTCCAGAC 57.564 45.455 0.00 0.00 36.26 3.51
281 283 2.484417 GCACTCCACATCCATAGACCAG 60.484 54.545 0.00 0.00 0.00 4.00
296 298 2.415090 GCAAAGACATGACATGCACTCC 60.415 50.000 15.49 4.65 37.00 3.85
301 303 2.745821 TCTCTGCAAAGACATGACATGC 59.254 45.455 15.49 15.34 37.52 4.06
308 310 4.081752 ACGAAGATCTCTCTGCAAAGACAT 60.082 41.667 0.00 0.00 0.00 3.06
310 312 3.611986 CACGAAGATCTCTCTGCAAAGAC 59.388 47.826 0.00 0.00 0.00 3.01
313 315 3.667497 ACACGAAGATCTCTCTGCAAA 57.333 42.857 0.00 0.00 0.00 3.68
314 316 3.320626 CAACACGAAGATCTCTCTGCAA 58.679 45.455 0.00 0.00 0.00 4.08
315 317 2.353109 CCAACACGAAGATCTCTCTGCA 60.353 50.000 0.00 0.00 0.00 4.41
317 319 3.584406 ACCAACACGAAGATCTCTCTG 57.416 47.619 0.00 0.00 0.00 3.35
318 320 5.654650 AGAATACCAACACGAAGATCTCTCT 59.345 40.000 0.00 0.00 0.00 3.10
319 321 5.897050 AGAATACCAACACGAAGATCTCTC 58.103 41.667 0.00 0.00 0.00 3.20
320 322 5.923733 AGAATACCAACACGAAGATCTCT 57.076 39.130 0.00 0.00 0.00 3.10
361 363 8.822805 AGGTACCTTCATTCAGAGTATAAACAA 58.177 33.333 9.21 0.00 0.00 2.83
391 393 1.134936 TGTGCATCTGAAATGCCATGC 60.135 47.619 7.48 0.00 43.94 4.06
468 470 5.164022 GCGAAATTCTTCCATGAAAGCTTTG 60.164 40.000 18.30 2.59 0.00 2.77
469 471 4.925646 GCGAAATTCTTCCATGAAAGCTTT 59.074 37.500 12.53 12.53 0.00 3.51
682 685 4.260990 CGGTTTTTACAGCACACAGAATCA 60.261 41.667 0.00 0.00 0.00 2.57
821 828 9.959721 AGATTAAGTTCAGCTGATTACCTTTAA 57.040 29.630 19.04 14.45 0.00 1.52
822 829 9.959721 AAGATTAAGTTCAGCTGATTACCTTTA 57.040 29.630 19.04 11.27 0.00 1.85
823 830 8.870075 AAGATTAAGTTCAGCTGATTACCTTT 57.130 30.769 19.04 7.65 0.00 3.11
824 831 9.959721 TTAAGATTAAGTTCAGCTGATTACCTT 57.040 29.630 19.04 18.53 0.00 3.50
858 865 1.547372 GTGGCAAAGCAGATGATTGGT 59.453 47.619 0.00 0.00 0.00 3.67
925 932 3.025322 TGTAAATGGCCATTAGTGGGG 57.975 47.619 30.84 0.00 46.14 4.96
954 961 3.620374 CACACAACTACTGATCATGGAGC 59.380 47.826 0.00 0.00 0.00 4.70
985 992 1.664321 GCCATGGCTGAGCTTTGAGG 61.664 60.000 29.98 1.01 38.26 3.86
1023 1030 4.443457 GGGACTATGATTGCAGCAGTAGAA 60.443 45.833 0.00 0.00 0.00 2.10
1062 1069 1.758936 CATCCATGGAAGCTCTTGCA 58.241 50.000 20.67 6.30 44.73 4.08
1106 1113 1.467734 TGACCGAACTAGAAGCTCGTC 59.532 52.381 0.00 0.00 32.38 4.20
1109 1116 1.474879 AGCTGACCGAACTAGAAGCTC 59.525 52.381 0.00 0.00 36.26 4.09
1190 1326 7.657354 GCTAACATAGTTACATCATCATCACCA 59.343 37.037 0.00 0.00 0.00 4.17
1191 1327 7.657354 TGCTAACATAGTTACATCATCATCACC 59.343 37.037 0.00 0.00 0.00 4.02
1192 1328 8.593492 TGCTAACATAGTTACATCATCATCAC 57.407 34.615 0.00 0.00 0.00 3.06
1227 1363 5.705609 TCCTTCAGATTACCAAAAACAGC 57.294 39.130 0.00 0.00 0.00 4.40
1320 1456 0.167470 CTCGCACAGCAATTCACCAG 59.833 55.000 0.00 0.00 0.00 4.00
1331 1467 2.110967 CATCCAAGCCCTCGCACAG 61.111 63.158 0.00 0.00 37.52 3.66
1367 1503 5.595952 GGGTCAATTTCTCAATATCTTGCCT 59.404 40.000 0.00 0.00 32.11 4.75
1371 1507 8.331740 TCTCTTGGGTCAATTTCTCAATATCTT 58.668 33.333 0.00 0.00 0.00 2.40
1378 1514 3.652869 ACCTCTCTTGGGTCAATTTCTCA 59.347 43.478 0.00 0.00 30.15 3.27
1411 1553 9.533253 AAACAAACAGAAAAAGGATGAACATAG 57.467 29.630 0.00 0.00 0.00 2.23
1461 1603 7.015682 ACTGGTCACTTATATATAGCAGCACTT 59.984 37.037 10.25 0.00 38.83 3.16
1590 1734 3.054503 GTGGCAGCAGCAGACTGG 61.055 66.667 2.65 0.00 44.63 4.00
1637 1781 2.673368 CGTTTCTACAGGGCTAAGCTTG 59.327 50.000 9.86 0.01 0.00 4.01
1648 1792 2.015736 ATCAGCCAGCGTTTCTACAG 57.984 50.000 0.00 0.00 0.00 2.74
1666 1855 7.665974 TGGAGATCGATCTACACATAACAGTAT 59.334 37.037 32.22 4.36 42.67 2.12
1693 1882 0.890542 ATCGAGCAAGCAAGCAACCA 60.891 50.000 3.19 0.00 36.85 3.67
1724 1917 5.655532 TCCTTCCTACCTACACACATAAGAC 59.344 44.000 0.00 0.00 0.00 3.01
1749 1942 1.277580 CCCCAGTGCTCTCCAATCCT 61.278 60.000 0.00 0.00 0.00 3.24
1750 1943 1.225704 CCCCAGTGCTCTCCAATCC 59.774 63.158 0.00 0.00 0.00 3.01
1751 1944 1.225704 CCCCCAGTGCTCTCCAATC 59.774 63.158 0.00 0.00 0.00 2.67
1752 1945 2.988839 GCCCCCAGTGCTCTCCAAT 61.989 63.158 0.00 0.00 0.00 3.16
1760 1953 1.449353 CTAGATCAGCCCCCAGTGC 59.551 63.158 0.00 0.00 0.00 4.40
1855 2049 8.360390 ACATGATAAAAGGAGAAACTGAAAACC 58.640 33.333 0.00 0.00 0.00 3.27
1916 2110 4.305769 TCAATTGCAAACCGAATTGAAGG 58.694 39.130 1.71 0.00 42.71 3.46
1920 2114 5.162794 TCAGATCAATTGCAAACCGAATTG 58.837 37.500 1.71 2.18 39.79 2.32
1921 2115 5.389859 TCAGATCAATTGCAAACCGAATT 57.610 34.783 1.71 0.00 0.00 2.17
1925 2119 6.470557 AAAATTCAGATCAATTGCAAACCG 57.529 33.333 1.71 0.00 0.00 4.44
2008 2202 8.442632 TTCATCTACAGATTATTTGCTGGAAG 57.557 34.615 0.00 0.00 36.47 3.46
2025 2220 5.565259 CACGTGCTTGACATTTTTCATCTAC 59.435 40.000 0.82 0.00 0.00 2.59
2028 2223 3.670055 CCACGTGCTTGACATTTTTCATC 59.330 43.478 10.91 0.00 0.00 2.92
2029 2224 3.317711 TCCACGTGCTTGACATTTTTCAT 59.682 39.130 10.91 0.00 0.00 2.57
2052 2247 7.167535 TCTCTAAACATCATTCATCACCACAA 58.832 34.615 0.00 0.00 0.00 3.33
2058 2253 7.563020 AGCTTCTCTCTAAACATCATTCATCA 58.437 34.615 0.00 0.00 0.00 3.07
2060 2255 8.045507 TCAAGCTTCTCTCTAAACATCATTCAT 58.954 33.333 0.00 0.00 0.00 2.57
2062 2257 7.548780 AGTCAAGCTTCTCTCTAAACATCATTC 59.451 37.037 0.00 0.00 0.00 2.67
2063 2258 7.393216 AGTCAAGCTTCTCTCTAAACATCATT 58.607 34.615 0.00 0.00 0.00 2.57
2079 2294 6.116126 ACTTAAACAGAACTGAGTCAAGCTT 58.884 36.000 8.87 0.00 0.00 3.74
2087 2302 6.650807 TGGCTATGAACTTAAACAGAACTGAG 59.349 38.462 8.87 0.00 0.00 3.35
2090 2306 6.998673 ACTTGGCTATGAACTTAAACAGAACT 59.001 34.615 0.00 0.00 0.00 3.01
2097 2313 6.995686 TGAGTGAACTTGGCTATGAACTTAAA 59.004 34.615 0.00 0.00 0.00 1.52
2105 2321 3.011818 TGCATGAGTGAACTTGGCTATG 58.988 45.455 0.00 0.00 0.00 2.23
2107 2323 2.224499 TGTGCATGAGTGAACTTGGCTA 60.224 45.455 0.00 0.00 34.73 3.93
2108 2324 1.242076 GTGCATGAGTGAACTTGGCT 58.758 50.000 0.00 0.00 30.61 4.75
2109 2325 0.953727 TGTGCATGAGTGAACTTGGC 59.046 50.000 0.00 0.00 34.73 4.52
2111 2327 3.909776 ATGTGTGCATGAGTGAACTTG 57.090 42.857 0.00 0.00 34.73 3.16
2112 2328 4.388485 TGTATGTGTGCATGAGTGAACTT 58.612 39.130 0.00 0.00 34.73 2.66
2113 2329 4.006780 TGTATGTGTGCATGAGTGAACT 57.993 40.909 0.00 0.00 34.73 3.01
2115 2331 4.213906 CACTTGTATGTGTGCATGAGTGAA 59.786 41.667 0.00 0.00 40.35 3.18
2116 2332 3.747529 CACTTGTATGTGTGCATGAGTGA 59.252 43.478 0.00 0.00 40.35 3.41
2154 2405 2.346766 TTTGGCAAAGAGACAGCAGA 57.653 45.000 8.93 0.00 35.94 4.26
2155 2406 3.572584 GAATTTGGCAAAGAGACAGCAG 58.427 45.455 18.61 0.00 35.94 4.24
2156 2407 2.297033 GGAATTTGGCAAAGAGACAGCA 59.703 45.455 18.61 0.00 35.94 4.41
2157 2408 2.353109 GGGAATTTGGCAAAGAGACAGC 60.353 50.000 18.61 2.54 35.94 4.40
2158 2409 2.095059 CGGGAATTTGGCAAAGAGACAG 60.095 50.000 18.61 5.78 35.94 3.51
2159 2410 1.885887 CGGGAATTTGGCAAAGAGACA 59.114 47.619 18.61 0.00 0.00 3.41
2195 2448 5.376854 AGCAAATCTGAACATGGTGTTAC 57.623 39.130 0.00 0.00 41.28 2.50
2204 2457 6.036408 CAGATGAATACGAGCAAATCTGAACA 59.964 38.462 13.26 0.00 42.23 3.18
2227 2480 3.795639 CGCCGCAGATATCTGAATATCAG 59.204 47.826 32.38 14.03 46.59 2.90
2228 2481 3.443681 TCGCCGCAGATATCTGAATATCA 59.556 43.478 32.38 10.90 46.59 2.15
2229 2482 3.794028 GTCGCCGCAGATATCTGAATATC 59.206 47.826 32.38 15.33 46.59 1.63
2230 2483 3.429547 GGTCGCCGCAGATATCTGAATAT 60.430 47.826 32.38 0.00 46.59 1.28
2231 2484 2.094700 GGTCGCCGCAGATATCTGAATA 60.095 50.000 32.38 12.05 46.59 1.75
2232 2485 1.337260 GGTCGCCGCAGATATCTGAAT 60.337 52.381 32.38 0.00 46.59 2.57
2242 2495 3.726517 CAACTTGGGTCGCCGCAG 61.727 66.667 0.00 0.00 34.70 5.18
2275 2531 0.951558 AAAGGCACCATCGTTGTGAC 59.048 50.000 6.03 3.26 42.27 3.67
2290 2546 2.642807 TCTCACCCCACCTAGAAAAAGG 59.357 50.000 0.00 0.00 42.82 3.11
2291 2547 3.583086 TCTCTCACCCCACCTAGAAAAAG 59.417 47.826 0.00 0.00 0.00 2.27
2346 2602 2.733517 GCGTAGGTCTCATAGCTGAAC 58.266 52.381 0.00 0.00 37.13 3.18
2349 2605 0.661780 GCGCGTAGGTCTCATAGCTG 60.662 60.000 8.43 0.00 37.13 4.24
2391 2648 2.748461 TTCGCTTGTAGCACAACAAC 57.252 45.000 0.00 0.00 42.58 3.32
2399 2656 3.375299 AGGATGATTGTTTCGCTTGTAGC 59.625 43.478 0.00 0.00 38.02 3.58
2400 2657 5.106555 ACAAGGATGATTGTTTCGCTTGTAG 60.107 40.000 0.00 0.00 40.47 2.74
2426 2683 2.236146 TGATTTGTATGGTCCTGTCGCT 59.764 45.455 0.00 0.00 0.00 4.93
2457 2714 6.750963 GTGCTGGTCTGTTACAGTATACTTAC 59.249 42.308 12.41 2.88 37.07 2.34
2458 2715 6.403964 CGTGCTGGTCTGTTACAGTATACTTA 60.404 42.308 12.41 0.00 37.07 2.24
2459 2716 5.621555 CGTGCTGGTCTGTTACAGTATACTT 60.622 44.000 12.41 0.00 37.07 2.24
2460 2717 4.142447 CGTGCTGGTCTGTTACAGTATACT 60.142 45.833 12.41 0.00 37.07 2.12
2461 2718 4.103357 CGTGCTGGTCTGTTACAGTATAC 58.897 47.826 12.41 3.30 37.07 1.47
2462 2719 4.011698 TCGTGCTGGTCTGTTACAGTATA 58.988 43.478 12.41 0.00 37.07 1.47
2463 2720 2.823747 TCGTGCTGGTCTGTTACAGTAT 59.176 45.455 12.41 0.00 37.07 2.12
2464 2721 2.232399 TCGTGCTGGTCTGTTACAGTA 58.768 47.619 12.41 0.01 37.07 2.74
2465 2722 1.037493 TCGTGCTGGTCTGTTACAGT 58.963 50.000 12.41 0.00 37.07 3.55
2466 2723 1.995484 CATCGTGCTGGTCTGTTACAG 59.005 52.381 5.94 5.94 37.76 2.74
2467 2724 1.939381 GCATCGTGCTGGTCTGTTACA 60.939 52.381 3.20 0.00 40.96 2.41
2468 2725 0.721718 GCATCGTGCTGGTCTGTTAC 59.278 55.000 3.20 0.00 40.96 2.50
2469 2726 0.320050 TGCATCGTGCTGGTCTGTTA 59.680 50.000 10.54 0.00 45.31 2.41
2470 2727 1.071299 TGCATCGTGCTGGTCTGTT 59.929 52.632 10.54 0.00 45.31 3.16
2471 2728 1.669115 GTGCATCGTGCTGGTCTGT 60.669 57.895 10.54 0.00 45.31 3.41
2472 2729 1.229975 TTGTGCATCGTGCTGGTCTG 61.230 55.000 10.54 0.00 45.31 3.51
2473 2730 0.952497 CTTGTGCATCGTGCTGGTCT 60.952 55.000 10.54 0.00 45.31 3.85
2474 2731 0.950555 TCTTGTGCATCGTGCTGGTC 60.951 55.000 10.54 1.83 45.31 4.02
2475 2732 0.321919 ATCTTGTGCATCGTGCTGGT 60.322 50.000 10.54 0.00 45.31 4.00
2476 2733 0.806868 AATCTTGTGCATCGTGCTGG 59.193 50.000 10.54 0.91 45.31 4.85
2477 2734 2.247637 CAAATCTTGTGCATCGTGCTG 58.752 47.619 10.54 0.00 45.31 4.41
2478 2735 1.881973 ACAAATCTTGTGCATCGTGCT 59.118 42.857 10.54 0.00 45.31 4.40
2479 2736 2.336554 ACAAATCTTGTGCATCGTGC 57.663 45.000 0.00 3.44 43.48 5.34
2480 2737 5.030295 GGATTACAAATCTTGTGCATCGTG 58.970 41.667 2.30 0.00 45.03 4.35
2481 2738 4.699735 TGGATTACAAATCTTGTGCATCGT 59.300 37.500 2.30 0.00 45.03 3.73
2482 2739 5.233957 TGGATTACAAATCTTGTGCATCG 57.766 39.130 2.30 0.00 45.03 3.84
2494 2751 7.439655 GCACACCTTATTGTTTTGGATTACAAA 59.560 33.333 0.00 0.00 46.82 2.83
2495 2752 6.926272 GCACACCTTATTGTTTTGGATTACAA 59.074 34.615 0.00 0.00 38.50 2.41
2496 2753 6.040955 TGCACACCTTATTGTTTTGGATTACA 59.959 34.615 0.00 0.00 0.00 2.41
2497 2754 6.451393 TGCACACCTTATTGTTTTGGATTAC 58.549 36.000 0.00 0.00 0.00 1.89
2498 2755 6.656632 TGCACACCTTATTGTTTTGGATTA 57.343 33.333 0.00 0.00 0.00 1.75
2499 2756 5.543507 TGCACACCTTATTGTTTTGGATT 57.456 34.783 0.00 0.00 0.00 3.01
2500 2757 5.245751 TGATGCACACCTTATTGTTTTGGAT 59.754 36.000 0.00 0.00 0.00 3.41
2501 2758 4.586421 TGATGCACACCTTATTGTTTTGGA 59.414 37.500 0.00 0.00 0.00 3.53
2502 2759 4.880759 TGATGCACACCTTATTGTTTTGG 58.119 39.130 0.00 0.00 0.00 3.28
2503 2760 5.406175 CCTTGATGCACACCTTATTGTTTTG 59.594 40.000 0.00 0.00 0.00 2.44
2504 2761 5.511202 CCCTTGATGCACACCTTATTGTTTT 60.511 40.000 0.00 0.00 0.00 2.43
2505 2762 4.021192 CCCTTGATGCACACCTTATTGTTT 60.021 41.667 0.00 0.00 0.00 2.83
2506 2763 3.511146 CCCTTGATGCACACCTTATTGTT 59.489 43.478 0.00 0.00 0.00 2.83
2507 2764 3.091545 CCCTTGATGCACACCTTATTGT 58.908 45.455 0.00 0.00 0.00 2.71
2508 2765 2.159198 GCCCTTGATGCACACCTTATTG 60.159 50.000 0.00 0.00 0.00 1.90
2509 2766 2.102578 GCCCTTGATGCACACCTTATT 58.897 47.619 0.00 0.00 0.00 1.40
2510 2767 1.005805 TGCCCTTGATGCACACCTTAT 59.994 47.619 0.00 0.00 32.85 1.73
2511 2768 0.403655 TGCCCTTGATGCACACCTTA 59.596 50.000 0.00 0.00 32.85 2.69
2512 2769 0.896940 CTGCCCTTGATGCACACCTT 60.897 55.000 0.00 0.00 34.46 3.50
2513 2770 1.303888 CTGCCCTTGATGCACACCT 60.304 57.895 0.00 0.00 34.46 4.00
2514 2771 1.303561 TCTGCCCTTGATGCACACC 60.304 57.895 0.00 0.00 34.46 4.16
2515 2772 1.930908 GCTCTGCCCTTGATGCACAC 61.931 60.000 0.00 0.00 34.46 3.82
2516 2773 1.676635 GCTCTGCCCTTGATGCACA 60.677 57.895 0.00 0.00 34.46 4.57
2517 2774 2.413142 GGCTCTGCCCTTGATGCAC 61.413 63.158 0.00 0.00 44.06 4.57
2518 2775 2.044650 GGCTCTGCCCTTGATGCA 60.045 61.111 0.00 0.00 44.06 3.96
2546 2803 4.293648 TCACACCCTGCCGACGTG 62.294 66.667 0.00 0.00 0.00 4.49
2547 2804 4.295119 GTCACACCCTGCCGACGT 62.295 66.667 0.00 0.00 0.00 4.34
2548 2805 3.991051 AGTCACACCCTGCCGACG 61.991 66.667 0.00 0.00 30.92 5.12
2549 2806 2.357517 CAGTCACACCCTGCCGAC 60.358 66.667 0.00 0.00 0.00 4.79
2550 2807 1.978455 AAACAGTCACACCCTGCCGA 61.978 55.000 0.00 0.00 33.09 5.54
2551 2808 1.525995 AAACAGTCACACCCTGCCG 60.526 57.895 0.00 0.00 33.09 5.69
2552 2809 2.032981 CAAACAGTCACACCCTGCC 58.967 57.895 0.00 0.00 33.09 4.85
2553 2810 1.360192 GCAAACAGTCACACCCTGC 59.640 57.895 0.00 0.00 33.09 4.85
2554 2811 0.813610 TCGCAAACAGTCACACCCTG 60.814 55.000 0.00 0.00 36.01 4.45
2555 2812 0.108585 ATCGCAAACAGTCACACCCT 59.891 50.000 0.00 0.00 0.00 4.34
2556 2813 0.238289 CATCGCAAACAGTCACACCC 59.762 55.000 0.00 0.00 0.00 4.61
2557 2814 0.238289 CCATCGCAAACAGTCACACC 59.762 55.000 0.00 0.00 0.00 4.16
2558 2815 0.385974 GCCATCGCAAACAGTCACAC 60.386 55.000 0.00 0.00 34.03 3.82
2559 2816 1.514678 GGCCATCGCAAACAGTCACA 61.515 55.000 0.00 0.00 36.38 3.58
2560 2817 1.210155 GGCCATCGCAAACAGTCAC 59.790 57.895 0.00 0.00 36.38 3.67
2561 2818 0.821301 TTGGCCATCGCAAACAGTCA 60.821 50.000 6.09 0.00 36.38 3.41
2562 2819 0.527565 ATTGGCCATCGCAAACAGTC 59.472 50.000 6.09 0.00 36.38 3.51
2563 2820 0.968405 AATTGGCCATCGCAAACAGT 59.032 45.000 6.09 0.00 36.38 3.55
2564 2821 1.067706 TCAATTGGCCATCGCAAACAG 60.068 47.619 6.09 0.00 36.38 3.16
2565 2822 0.964700 TCAATTGGCCATCGCAAACA 59.035 45.000 6.09 0.00 36.38 2.83
2566 2823 1.994779 CTTCAATTGGCCATCGCAAAC 59.005 47.619 6.09 0.00 36.38 2.93
2567 2824 1.672441 GCTTCAATTGGCCATCGCAAA 60.672 47.619 6.09 0.00 36.38 3.68
2568 2825 0.108709 GCTTCAATTGGCCATCGCAA 60.109 50.000 6.09 0.00 36.38 4.85
2569 2826 1.512230 GCTTCAATTGGCCATCGCA 59.488 52.632 6.09 0.00 36.38 5.10
2570 2827 1.587088 CGCTTCAATTGGCCATCGC 60.587 57.895 6.09 2.17 0.00 4.58
2571 2828 0.248215 GTCGCTTCAATTGGCCATCG 60.248 55.000 6.09 0.00 0.00 3.84
2572 2829 0.248215 CGTCGCTTCAATTGGCCATC 60.248 55.000 6.09 0.00 0.00 3.51
2573 2830 1.656818 CCGTCGCTTCAATTGGCCAT 61.657 55.000 6.09 0.00 0.00 4.40
2574 2831 2.331893 CCGTCGCTTCAATTGGCCA 61.332 57.895 0.00 0.00 0.00 5.36
2575 2832 2.253414 GACCGTCGCTTCAATTGGCC 62.253 60.000 5.42 0.00 0.00 5.36
2576 2833 1.134694 GACCGTCGCTTCAATTGGC 59.865 57.895 5.42 0.83 0.00 4.52
2577 2834 1.794222 GGACCGTCGCTTCAATTGG 59.206 57.895 5.42 0.00 0.00 3.16
2578 2835 1.419922 CGGACCGTCGCTTCAATTG 59.580 57.895 5.48 0.00 0.00 2.32
2579 2836 3.870606 CGGACCGTCGCTTCAATT 58.129 55.556 5.48 0.00 0.00 2.32
2587 2844 2.504244 GAGAAGTGCGGACCGTCG 60.504 66.667 16.73 0.00 0.00 5.12
2588 2845 2.504244 CGAGAAGTGCGGACCGTC 60.504 66.667 16.73 8.54 0.00 4.79
2589 2846 2.359570 AAACGAGAAGTGCGGACCGT 62.360 55.000 16.73 3.02 0.00 4.83
2590 2847 1.663702 AAACGAGAAGTGCGGACCG 60.664 57.895 10.29 10.29 0.00 4.79
2591 2848 1.860078 CAAACGAGAAGTGCGGACC 59.140 57.895 2.38 0.00 0.00 4.46
2592 2849 1.204312 GCAAACGAGAAGTGCGGAC 59.796 57.895 0.00 0.00 0.00 4.79
2593 2850 0.531974 AAGCAAACGAGAAGTGCGGA 60.532 50.000 0.00 0.00 43.16 5.54
2594 2851 0.307760 AAAGCAAACGAGAAGTGCGG 59.692 50.000 0.00 0.00 43.16 5.69
2595 2852 2.941891 TAAAGCAAACGAGAAGTGCG 57.058 45.000 0.00 0.00 43.16 5.34
2596 2853 3.122948 TCGATAAAGCAAACGAGAAGTGC 59.877 43.478 0.00 0.00 38.59 4.40
2597 2854 4.903638 TCGATAAAGCAAACGAGAAGTG 57.096 40.909 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.