Multiple sequence alignment - TraesCS5A01G059100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G059100 chr5A 100.000 5450 0 0 1 5450 59595066 59600515 0.000000e+00 10065.0
1 TraesCS5A01G059100 chr5D 93.532 4159 171 41 614 4735 68692764 68696861 0.000000e+00 6100.0
2 TraesCS5A01G059100 chr5D 84.290 331 32 12 256 570 68692452 68692778 6.860000e-79 305.0
3 TraesCS5A01G059100 chr5D 86.786 280 17 8 4944 5222 68697229 68697489 1.480000e-75 294.0
4 TraesCS5A01G059100 chr5D 85.385 130 14 2 5323 5447 68697516 68697645 4.430000e-26 130.0
5 TraesCS5A01G059100 chr5B 93.686 4023 166 38 740 4733 74632807 74636770 0.000000e+00 5941.0
6 TraesCS5A01G059100 chr5B 87.826 575 54 14 7 570 74619292 74619861 0.000000e+00 660.0
7 TraesCS5A01G059100 chr5B 82.766 499 49 14 4944 5438 74637222 74637687 1.410000e-110 411.0
8 TraesCS5A01G059100 chr5B 90.164 122 6 4 614 731 74619847 74619966 2.630000e-33 154.0
9 TraesCS5A01G059100 chr4A 84.431 167 22 4 1560 1724 556537589 556537753 1.570000e-35 161.0
10 TraesCS5A01G059100 chr1D 95.833 48 0 1 567 614 34636091 34636046 5.850000e-10 76.8
11 TraesCS5A01G059100 chr1D 97.368 38 0 1 579 615 490130832 490130795 4.560000e-06 63.9
12 TraesCS5A01G059100 chr6B 97.561 41 1 0 573 613 719970698 719970658 2.720000e-08 71.3
13 TraesCS5A01G059100 chr1B 93.617 47 1 2 570 614 53050029 53049983 9.800000e-08 69.4
14 TraesCS5A01G059100 chr2D 97.297 37 0 1 579 614 556364269 556364233 1.640000e-05 62.1
15 TraesCS5A01G059100 chr7D 97.059 34 0 1 579 611 58156028 58155995 7.630000e-04 56.5
16 TraesCS5A01G059100 chr7D 100.000 29 0 0 4833 4861 116792117 116792089 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G059100 chr5A 59595066 59600515 5449 False 10065.00 10065 100.00000 1 5450 1 chr5A.!!$F1 5449
1 TraesCS5A01G059100 chr5D 68692452 68697645 5193 False 1707.25 6100 87.49825 256 5447 4 chr5D.!!$F1 5191
2 TraesCS5A01G059100 chr5B 74632807 74637687 4880 False 3176.00 5941 88.22600 740 5438 2 chr5B.!!$F2 4698
3 TraesCS5A01G059100 chr5B 74619292 74619966 674 False 407.00 660 88.99500 7 731 2 chr5B.!!$F1 724

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
334 338 0.108138 GCGCCTTGCCTTTAGAGAGA 60.108 55.0 0.0 0.0 37.76 3.10 F
1030 1053 0.039035 ACAAGACTCGCCTCTCCTCT 59.961 55.0 0.0 0.0 0.00 3.69 F
1055 1078 0.105709 CCCTTCTCCTCTCCCTCCTC 60.106 65.0 0.0 0.0 0.00 3.71 F
1056 1079 0.105709 CCTTCTCCTCTCCCTCCTCC 60.106 65.0 0.0 0.0 0.00 4.30 F
1575 1604 0.399233 GCTATGGAGGAGGTGGAGGT 60.399 60.0 0.0 0.0 0.00 3.85 F
3340 3375 0.953960 AAGACAACCGTCCAATCGCC 60.954 55.0 0.0 0.0 43.73 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1558 1587 0.031111 CCACCTCCACCTCCTCCATA 60.031 60.000 0.00 0.00 0.00 2.74 R
1923 1955 0.109597 GACCAAATCAAGGCTGCGTG 60.110 55.000 0.00 0.00 0.00 5.34 R
2140 2172 1.115467 AAGACCTCGGCGATGAGATT 58.885 50.000 18.96 7.21 38.28 2.40 R
2786 2820 1.992557 TGGTGCTAGGAAAAGGGTGAT 59.007 47.619 0.00 0.00 0.00 3.06 R
3421 3456 1.167155 TGAGATCCGCGAGACCTAGC 61.167 60.000 8.23 0.00 0.00 3.42 R
4696 4760 0.104672 TCTTCCCCTTGACCTCCACA 60.105 55.000 0.00 0.00 0.00 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.765695 AAAAAGATGGAGTCTGAGCAAATAA 57.234 32.000 0.00 0.00 37.23 1.40
107 110 9.094578 TCCCATAAATCAAAATGGTCAAAGTAA 57.905 29.630 0.00 0.00 40.97 2.24
204 207 2.216940 CACACACTTGTACGTGTTACGG 59.783 50.000 0.00 0.00 45.27 4.02
232 235 3.004419 GGACTTTTCCGGACCAGAAAAAG 59.996 47.826 18.27 18.27 41.37 2.27
302 306 4.762251 AGTGTTCAAACTCTCCTAATTGGC 59.238 41.667 0.00 0.00 35.26 4.52
333 337 1.424493 CGCGCCTTGCCTTTAGAGAG 61.424 60.000 0.00 0.00 42.08 3.20
334 338 0.108138 GCGCCTTGCCTTTAGAGAGA 60.108 55.000 0.00 0.00 37.76 3.10
353 363 1.215423 GAAGAGAGAGAGAGAGGCCCT 59.785 57.143 0.00 0.00 0.00 5.19
362 372 4.785376 AGAGAGAGAGGCCCTTTATTTTCA 59.215 41.667 0.00 0.00 0.00 2.69
372 382 9.131791 GAGGCCCTTTATTTTCATAGTCAAATA 57.868 33.333 0.00 0.00 0.00 1.40
401 411 7.986085 AATTAGTGTAGTGTCAGAAATGCTT 57.014 32.000 0.00 0.00 0.00 3.91
434 456 8.617290 TTGGAAGAAAGGAAGTACTAATTGTC 57.383 34.615 0.00 0.00 0.00 3.18
530 552 5.808540 GCTTGCATCTTTATTCAAAGCATGA 59.191 36.000 0.00 0.00 40.89 3.07
531 553 6.479001 GCTTGCATCTTTATTCAAAGCATGAT 59.521 34.615 0.00 0.00 40.89 2.45
532 554 7.011109 GCTTGCATCTTTATTCAAAGCATGATT 59.989 33.333 0.00 0.00 40.89 2.57
533 555 8.780846 TTGCATCTTTATTCAAAGCATGATTT 57.219 26.923 2.39 2.39 40.89 2.17
534 556 8.780846 TGCATCTTTATTCAAAGCATGATTTT 57.219 26.923 6.13 0.00 40.89 1.82
559 581 8.017587 TCTTTTCTTTTGAGTTGTTTCAAAGC 57.982 30.769 2.02 0.00 45.00 3.51
560 582 7.655328 TCTTTTCTTTTGAGTTGTTTCAAAGCA 59.345 29.630 2.02 0.00 45.00 3.91
561 583 7.903995 TTTCTTTTGAGTTGTTTCAAAGCAT 57.096 28.000 2.02 0.00 45.00 3.79
562 584 8.994429 TTTCTTTTGAGTTGTTTCAAAGCATA 57.006 26.923 2.02 0.00 45.00 3.14
563 585 8.994429 TTCTTTTGAGTTGTTTCAAAGCATAA 57.006 26.923 2.02 0.00 45.00 1.90
564 586 8.994429 TCTTTTGAGTTGTTTCAAAGCATAAA 57.006 26.923 2.02 0.00 45.00 1.40
565 587 9.598517 TCTTTTGAGTTGTTTCAAAGCATAAAT 57.401 25.926 2.02 0.00 45.00 1.40
567 589 9.985318 TTTTGAGTTGTTTCAAAGCATAAATTG 57.015 25.926 2.02 0.00 45.00 2.32
568 590 8.939201 TTGAGTTGTTTCAAAGCATAAATTGA 57.061 26.923 0.00 0.00 34.32 2.57
569 591 8.939201 TGAGTTGTTTCAAAGCATAAATTGAA 57.061 26.923 0.00 0.00 42.17 2.69
570 592 9.545105 TGAGTTGTTTCAAAGCATAAATTGAAT 57.455 25.926 2.20 0.00 43.04 2.57
607 629 9.740239 ATTTGAATTGCTTATCACATATGTCAC 57.260 29.630 5.07 0.00 0.00 3.67
608 630 6.947258 TGAATTGCTTATCACATATGTCACG 58.053 36.000 5.07 0.00 0.00 4.35
609 631 6.538381 TGAATTGCTTATCACATATGTCACGT 59.462 34.615 5.07 0.00 0.00 4.49
610 632 5.717038 TTGCTTATCACATATGTCACGTG 57.283 39.130 9.94 9.94 0.00 4.49
611 633 4.119136 TGCTTATCACATATGTCACGTGG 58.881 43.478 17.00 0.08 0.00 4.94
612 634 4.119862 GCTTATCACATATGTCACGTGGT 58.880 43.478 17.00 0.81 0.00 4.16
615 637 6.256975 GCTTATCACATATGTCACGTGGTAAA 59.743 38.462 17.00 0.00 36.18 2.01
629 651 8.904712 GTCACGTGGTAAACATAAATTAAAACC 58.095 33.333 17.00 0.00 0.00 3.27
650 672 5.291971 ACCGTCAAACTACGTCTTTGTATT 58.708 37.500 14.89 1.27 41.27 1.89
651 673 5.403466 ACCGTCAAACTACGTCTTTGTATTC 59.597 40.000 14.89 6.95 41.27 1.75
652 674 5.403166 CCGTCAAACTACGTCTTTGTATTCA 59.597 40.000 14.89 0.00 41.27 2.57
653 675 6.074195 CCGTCAAACTACGTCTTTGTATTCAA 60.074 38.462 14.89 0.00 41.27 2.69
654 676 6.784227 CGTCAAACTACGTCTTTGTATTCAAC 59.216 38.462 14.89 6.98 38.07 3.18
656 678 8.117988 GTCAAACTACGTCTTTGTATTCAACAA 58.882 33.333 14.89 0.00 46.41 2.83
679 702 5.405331 AGAAAAACTACGTCTTGCACTTC 57.595 39.130 0.00 0.00 0.00 3.01
719 742 3.438297 AATCTCATCGAACCACGGTAG 57.562 47.619 0.00 0.00 42.82 3.18
725 748 0.940519 TCGAACCACGGTAGTTTGCG 60.941 55.000 2.25 0.00 42.82 4.85
857 880 2.197605 TCGTTGACCTCGCTGACCA 61.198 57.895 0.00 0.00 0.00 4.02
871 894 4.235762 ACCACGGCAACAGCGACT 62.236 61.111 0.00 0.00 0.00 4.18
895 918 1.156736 CGACCCAAAGCAACGATCTT 58.843 50.000 0.00 0.00 0.00 2.40
905 928 1.226888 AACGATCTTAGCCGTCCGC 60.227 57.895 0.00 0.00 38.13 5.54
915 938 2.264480 CCGTCCGCTTCACCATCA 59.736 61.111 0.00 0.00 0.00 3.07
965 988 2.380084 TTTTCGATTCCACCCTCGAG 57.620 50.000 5.13 5.13 43.94 4.04
973 996 4.135153 CACCCTCGAGCTCCCACG 62.135 72.222 6.99 0.00 0.00 4.94
979 1002 1.136305 CCTCGAGCTCCCACGAATTTA 59.864 52.381 6.99 0.00 38.05 1.40
1030 1053 0.039035 ACAAGACTCGCCTCTCCTCT 59.961 55.000 0.00 0.00 0.00 3.69
1054 1077 0.556380 TCCCTTCTCCTCTCCCTCCT 60.556 60.000 0.00 0.00 0.00 3.69
1055 1078 0.105709 CCCTTCTCCTCTCCCTCCTC 60.106 65.000 0.00 0.00 0.00 3.71
1056 1079 0.105709 CCTTCTCCTCTCCCTCCTCC 60.106 65.000 0.00 0.00 0.00 4.30
1057 1080 0.933700 CTTCTCCTCTCCCTCCTCCT 59.066 60.000 0.00 0.00 0.00 3.69
1058 1081 0.930726 TTCTCCTCTCCCTCCTCCTC 59.069 60.000 0.00 0.00 0.00 3.71
1059 1082 0.996762 TCTCCTCTCCCTCCTCCTCC 60.997 65.000 0.00 0.00 0.00 4.30
1084 1107 2.046292 CTTCTTCCTCATCCCCTCTCC 58.954 57.143 0.00 0.00 0.00 3.71
1355 1378 3.090532 ATGGCTTCCCGAGTCCCC 61.091 66.667 0.00 0.00 0.00 4.81
1389 1412 3.422417 TTGCGACGAAAATTCCAAACA 57.578 38.095 0.00 0.00 0.00 2.83
1393 1416 3.551551 CGACGAAAATTCCAAACAGTCC 58.448 45.455 0.00 0.00 0.00 3.85
1491 1516 0.801251 GCTGCTTGCCAAGACTGTAG 59.199 55.000 9.04 0.00 35.15 2.74
1501 1526 3.259625 GCCAAGACTGTAGAAGGAAGAGT 59.740 47.826 0.00 0.00 0.00 3.24
1558 1587 6.042437 ACTTCTCAATTGATTTTTCTTGGGCT 59.958 34.615 8.96 0.00 0.00 5.19
1575 1604 0.399233 GCTATGGAGGAGGTGGAGGT 60.399 60.000 0.00 0.00 0.00 3.85
1723 1752 1.153005 CTCCCTCCTCAGCAATGGC 60.153 63.158 0.00 0.00 41.61 4.40
2118 2150 3.879892 GGGATCAGCCTGAAGTTTGATAC 59.120 47.826 0.00 0.00 36.66 2.24
2367 2399 9.515226 TTGCTCAAAAAGAAGGTATAACTATGT 57.485 29.630 0.00 0.00 0.00 2.29
2695 2729 6.435277 AGTCATGATGTTATTATTCCCCATGC 59.565 38.462 0.00 0.00 32.58 4.06
2883 2917 9.950496 AATTATATAGTGGATCATGTTGGTCTC 57.050 33.333 0.00 0.00 0.00 3.36
2885 2919 3.902881 AGTGGATCATGTTGGTCTCTC 57.097 47.619 0.00 0.00 0.00 3.20
2886 2920 3.176411 AGTGGATCATGTTGGTCTCTCA 58.824 45.455 0.00 0.00 0.00 3.27
2887 2921 3.055530 AGTGGATCATGTTGGTCTCTCAC 60.056 47.826 0.00 0.00 0.00 3.51
2888 2922 3.055530 GTGGATCATGTTGGTCTCTCACT 60.056 47.826 0.00 0.00 0.00 3.41
2889 2923 4.160439 GTGGATCATGTTGGTCTCTCACTA 59.840 45.833 0.00 0.00 0.00 2.74
2890 2924 4.160439 TGGATCATGTTGGTCTCTCACTAC 59.840 45.833 0.00 0.00 0.00 2.73
2891 2925 4.404073 GGATCATGTTGGTCTCTCACTACT 59.596 45.833 0.00 0.00 0.00 2.57
2892 2926 4.790765 TCATGTTGGTCTCTCACTACTG 57.209 45.455 0.00 0.00 0.00 2.74
2893 2927 4.152647 TCATGTTGGTCTCTCACTACTGT 58.847 43.478 0.00 0.00 0.00 3.55
2894 2928 4.218635 TCATGTTGGTCTCTCACTACTGTC 59.781 45.833 0.00 0.00 0.00 3.51
2895 2929 3.833732 TGTTGGTCTCTCACTACTGTCT 58.166 45.455 0.00 0.00 0.00 3.41
2896 2930 3.570125 TGTTGGTCTCTCACTACTGTCTG 59.430 47.826 0.00 0.00 0.00 3.51
2897 2931 3.510531 TGGTCTCTCACTACTGTCTGT 57.489 47.619 0.00 0.00 0.00 3.41
2898 2932 3.149981 TGGTCTCTCACTACTGTCTGTG 58.850 50.000 7.31 7.31 35.68 3.66
2905 2939 5.601662 TCTCACTACTGTCTGTGAAAAAGG 58.398 41.667 14.44 6.11 41.80 3.11
2915 2949 4.214332 GTCTGTGAAAAAGGGATCAGTCAC 59.786 45.833 0.00 0.00 36.71 3.67
3023 3057 3.737559 TTGCCCACCTCACATCTTAAT 57.262 42.857 0.00 0.00 0.00 1.40
3149 3183 4.855715 TGTCTCCACAGAAGACTAACTG 57.144 45.455 5.03 7.69 39.65 3.16
3150 3184 4.215908 TGTCTCCACAGAAGACTAACTGT 58.784 43.478 8.74 8.74 46.32 3.55
3155 3189 3.644884 ACAGAAGACTAACTGTGTCCG 57.355 47.619 12.44 0.00 44.18 4.79
3157 3191 1.272769 AGAAGACTAACTGTGTCCGGC 59.727 52.381 0.00 0.00 35.21 6.13
3164 3199 2.111043 CTGTGTCCGGCCACTTGT 59.889 61.111 17.71 0.00 36.30 3.16
3227 3262 2.436646 CCGGCGAGGAAGCATGTT 60.437 61.111 9.30 0.00 45.00 2.71
3305 3340 0.960364 ATAACCGGCTGCCAACACAG 60.960 55.000 20.29 0.28 40.80 3.66
3331 3366 1.893801 CCAGACCTAGAAGACAACCGT 59.106 52.381 0.00 0.00 0.00 4.83
3334 3369 1.891150 GACCTAGAAGACAACCGTCCA 59.109 52.381 0.00 0.00 43.73 4.02
3340 3375 0.953960 AAGACAACCGTCCAATCGCC 60.954 55.000 0.00 0.00 43.73 5.54
3397 3432 2.817844 GGCCTTTGTTTGAAGATACGGT 59.182 45.455 0.00 0.00 0.00 4.83
3403 3438 4.247267 TGTTTGAAGATACGGTCGAACT 57.753 40.909 0.00 0.00 38.47 3.01
3421 3456 4.578601 GAACTGTTCGTGTGAAAGTGAAG 58.421 43.478 4.57 0.00 35.46 3.02
3474 3509 2.964464 ACAAACAACATTGAGGCCATCA 59.036 40.909 5.01 2.70 35.62 3.07
3475 3510 3.579586 ACAAACAACATTGAGGCCATCAT 59.420 39.130 5.01 0.00 37.89 2.45
3476 3511 4.178540 CAAACAACATTGAGGCCATCATC 58.821 43.478 5.01 0.00 37.89 2.92
3479 3514 2.963101 CAACATTGAGGCCATCATCCAT 59.037 45.455 5.01 0.00 37.89 3.41
3550 3585 1.294459 GTTAGGGTTTCGGCGTCCT 59.706 57.895 6.85 12.29 0.00 3.85
3638 3676 5.488262 TCAAACTGAGAGATGACATGGAA 57.512 39.130 0.00 0.00 0.00 3.53
3680 3718 1.867363 AGATAGTGACAGGTGGGGTC 58.133 55.000 0.00 0.00 35.83 4.46
3681 3719 1.362932 AGATAGTGACAGGTGGGGTCT 59.637 52.381 0.00 0.00 36.26 3.85
3694 3732 2.696864 GGGTCTCCCTCAACATGGA 58.303 57.895 0.00 0.00 41.34 3.41
3837 3876 0.248417 CGATGACTCGCCTCTGTCTG 60.248 60.000 0.00 0.00 38.20 3.51
3909 3949 4.381292 GGCAGAAGAATTGTTCCAGGATTG 60.381 45.833 11.47 4.07 0.00 2.67
3923 3963 1.203050 AGGATTGAAAGGTGGTGGTGG 60.203 52.381 0.00 0.00 0.00 4.61
3993 4037 5.294552 GGTGTAATAGGAAGTTGCTGTGATC 59.705 44.000 7.22 0.00 0.00 2.92
4055 4099 5.185056 TGCTAGCAGTAGTGACTTTGACATA 59.815 40.000 14.93 0.00 31.73 2.29
4060 4104 6.425114 AGCAGTAGTGACTTTGACATAAGTTG 59.575 38.462 0.42 0.00 38.43 3.16
4062 4106 7.384115 GCAGTAGTGACTTTGACATAAGTTGTA 59.616 37.037 0.42 0.00 38.43 2.41
4063 4107 8.700644 CAGTAGTGACTTTGACATAAGTTGTAC 58.299 37.037 0.00 0.00 38.43 2.90
4064 4108 7.871463 AGTAGTGACTTTGACATAAGTTGTACC 59.129 37.037 0.00 0.00 38.43 3.34
4065 4109 6.588204 AGTGACTTTGACATAAGTTGTACCA 58.412 36.000 0.00 0.00 39.18 3.25
4067 4111 7.387948 AGTGACTTTGACATAAGTTGTACCATC 59.612 37.037 0.00 0.00 39.18 3.51
4068 4112 7.172532 GTGACTTTGACATAAGTTGTACCATCA 59.827 37.037 0.00 0.00 39.18 3.07
4069 4113 7.882791 TGACTTTGACATAAGTTGTACCATCAT 59.117 33.333 0.00 0.00 39.18 2.45
4070 4114 8.044060 ACTTTGACATAAGTTGTACCATCATG 57.956 34.615 0.00 0.00 39.18 3.07
4071 4115 7.121168 ACTTTGACATAAGTTGTACCATCATGG 59.879 37.037 0.54 0.54 40.56 3.66
4072 4116 6.306643 TGACATAAGTTGTACCATCATGGA 57.693 37.500 11.90 0.00 38.15 3.41
4073 4117 6.899089 TGACATAAGTTGTACCATCATGGAT 58.101 36.000 11.90 0.00 38.15 3.41
4140 4200 8.657074 GTACATTTGCATAACATGTACTAGGA 57.343 34.615 20.83 0.00 45.22 2.94
4141 4201 7.792374 ACATTTGCATAACATGTACTAGGAG 57.208 36.000 0.00 0.00 29.07 3.69
4142 4202 7.338710 ACATTTGCATAACATGTACTAGGAGT 58.661 34.615 0.00 0.00 29.07 3.85
4190 4250 9.072294 GTTTCTGTTATAAAAATGTAAGCGCAT 57.928 29.630 11.47 0.00 0.00 4.73
4223 4283 7.343833 AGGAAAATTCAAGATGAACTATGCCAT 59.656 33.333 0.00 0.00 39.45 4.40
4224 4284 7.650903 GGAAAATTCAAGATGAACTATGCCATC 59.349 37.037 0.00 0.00 39.45 3.51
4225 4285 7.649533 AAATTCAAGATGAACTATGCCATCA 57.350 32.000 0.00 0.00 39.45 3.07
4226 4286 7.649533 AATTCAAGATGAACTATGCCATCAA 57.350 32.000 0.00 0.00 39.45 2.57
4227 4287 6.441093 TTCAAGATGAACTATGCCATCAAC 57.559 37.500 0.00 0.00 41.07 3.18
4228 4288 5.748402 TCAAGATGAACTATGCCATCAACT 58.252 37.500 0.00 0.00 41.07 3.16
4229 4289 6.888105 TCAAGATGAACTATGCCATCAACTA 58.112 36.000 0.00 0.00 41.07 2.24
4230 4290 7.512130 TCAAGATGAACTATGCCATCAACTAT 58.488 34.615 0.00 0.00 41.07 2.12
4231 4291 7.994911 TCAAGATGAACTATGCCATCAACTATT 59.005 33.333 0.00 0.00 41.07 1.73
4264 4324 4.314522 TTTATCAGTGCTCCCAAATCCA 57.685 40.909 0.00 0.00 0.00 3.41
4315 4375 4.394300 ACATGATGCTTGCTTACTGAAGAC 59.606 41.667 0.00 0.00 34.25 3.01
4333 4393 2.436109 GGGGTCTTGCTGCCTGAA 59.564 61.111 0.00 0.00 0.00 3.02
4346 4406 2.865343 GCCTGAAGCAATCATGGAAG 57.135 50.000 0.00 0.00 42.97 3.46
4562 4625 6.850752 ATTAAGGGAGAAGATCTAGCTAGC 57.149 41.667 16.35 6.62 0.00 3.42
4563 4626 4.469469 AAGGGAGAAGATCTAGCTAGCT 57.531 45.455 23.12 23.12 0.00 3.32
4565 4628 5.179452 AGGGAGAAGATCTAGCTAGCTAG 57.821 47.826 36.20 36.20 45.38 3.42
4566 4629 4.601857 AGGGAGAAGATCTAGCTAGCTAGT 59.398 45.833 38.27 29.00 44.59 2.57
4567 4630 5.788533 AGGGAGAAGATCTAGCTAGCTAGTA 59.211 44.000 38.27 28.57 44.59 1.82
4570 4633 7.365652 GGGAGAAGATCTAGCTAGCTAGTATCT 60.366 44.444 38.27 35.46 44.59 1.98
4571 4634 8.047310 GGAGAAGATCTAGCTAGCTAGTATCTT 58.953 40.741 39.18 39.18 44.41 2.40
4573 4636 9.807921 AGAAGATCTAGCTAGCTAGTATCTTTT 57.192 33.333 38.96 35.57 43.43 2.27
4602 4665 9.759259 CTTGTTTTTCTTTTTCTTTTTGCTAGG 57.241 29.630 0.00 0.00 0.00 3.02
4603 4666 9.495572 TTGTTTTTCTTTTTCTTTTTGCTAGGA 57.504 25.926 0.00 0.00 0.00 2.94
4604 4667 9.150348 TGTTTTTCTTTTTCTTTTTGCTAGGAG 57.850 29.630 0.00 0.00 0.00 3.69
4605 4668 9.366216 GTTTTTCTTTTTCTTTTTGCTAGGAGA 57.634 29.630 0.00 0.00 0.00 3.71
4608 4671 9.936759 TTTCTTTTTCTTTTTGCTAGGAGAAAA 57.063 25.926 12.91 12.91 42.86 2.29
4615 4678 8.110860 TCTTTTTGCTAGGAGAAAAATGTAGG 57.889 34.615 1.68 0.00 33.04 3.18
4636 4700 3.368739 GGAGCATTTCATTTGGTCAAGGG 60.369 47.826 5.39 0.00 42.06 3.95
4643 4707 4.935352 TCATTTGGTCAAGGGAAACAAG 57.065 40.909 0.00 0.00 0.00 3.16
4659 4723 5.107220 GGAAACAAGCATTTCTTCAAGCATG 60.107 40.000 7.71 0.00 38.43 4.06
4680 4744 5.968676 TGGGATTAGGCAAACATAGTACT 57.031 39.130 0.00 0.00 0.00 2.73
4689 4753 5.875359 AGGCAAACATAGTACTGCTACTTTC 59.125 40.000 5.39 0.00 34.79 2.62
4696 4760 4.939052 AGTACTGCTACTTTCTGTGTGT 57.061 40.909 0.00 0.00 27.62 3.72
4697 4761 4.621991 AGTACTGCTACTTTCTGTGTGTG 58.378 43.478 0.00 0.00 27.62 3.82
4698 4762 3.543680 ACTGCTACTTTCTGTGTGTGT 57.456 42.857 0.00 0.00 0.00 3.72
4700 4764 2.545526 CTGCTACTTTCTGTGTGTGTGG 59.454 50.000 0.00 0.00 0.00 4.17
4701 4765 2.169561 TGCTACTTTCTGTGTGTGTGGA 59.830 45.455 0.00 0.00 0.00 4.02
4702 4766 2.802816 GCTACTTTCTGTGTGTGTGGAG 59.197 50.000 0.00 0.00 0.00 3.86
4710 4775 0.535102 GTGTGTGTGGAGGTCAAGGG 60.535 60.000 0.00 0.00 0.00 3.95
4720 4785 3.920197 TGGAGGTCAAGGGGAAGATTTAA 59.080 43.478 0.00 0.00 0.00 1.52
4733 4798 5.336770 GGGAAGATTTAACTTCAAGCAAGGG 60.337 44.000 0.00 0.00 45.39 3.95
4734 4799 4.790765 AGATTTAACTTCAAGCAAGGGC 57.209 40.909 0.00 0.00 36.26 5.19
4735 4800 5.047731 GAAGATTTAACTTCAAGCAAGGGCT 60.048 40.000 0.00 0.00 44.08 5.19
4781 4846 6.822667 TTGCAAGCAAGGATATGTATATGG 57.177 37.500 2.89 0.00 0.00 2.74
4782 4847 5.255687 TGCAAGCAAGGATATGTATATGGG 58.744 41.667 0.00 0.00 0.00 4.00
4783 4848 4.641989 GCAAGCAAGGATATGTATATGGGG 59.358 45.833 0.00 0.00 0.00 4.96
4785 4850 4.709944 AGCAAGGATATGTATATGGGGGA 58.290 43.478 0.00 0.00 0.00 4.81
4787 4852 6.461451 AGCAAGGATATGTATATGGGGGATA 58.539 40.000 0.00 0.00 0.00 2.59
4788 4853 7.091558 AGCAAGGATATGTATATGGGGGATAT 58.908 38.462 0.00 0.00 0.00 1.63
4789 4854 7.017950 AGCAAGGATATGTATATGGGGGATATG 59.982 40.741 0.00 0.00 0.00 1.78
4790 4855 7.693132 CAAGGATATGTATATGGGGGATATGG 58.307 42.308 0.00 0.00 0.00 2.74
4791 4856 6.342520 AGGATATGTATATGGGGGATATGGG 58.657 44.000 0.00 0.00 0.00 4.00
4792 4857 5.492524 GGATATGTATATGGGGGATATGGGG 59.507 48.000 0.00 0.00 0.00 4.96
4793 4858 2.498441 TGTATATGGGGGATATGGGGC 58.502 52.381 0.00 0.00 0.00 5.80
4794 4859 2.048580 TGTATATGGGGGATATGGGGCT 59.951 50.000 0.00 0.00 0.00 5.19
4796 4861 1.381867 TATGGGGGATATGGGGCTTG 58.618 55.000 0.00 0.00 0.00 4.01
4797 4862 1.446267 ATGGGGGATATGGGGCTTGG 61.446 60.000 0.00 0.00 0.00 3.61
4799 4864 2.091283 GGGGATATGGGGCTTGGGT 61.091 63.158 0.00 0.00 0.00 4.51
4801 4866 1.360393 GGGATATGGGGCTTGGGTCA 61.360 60.000 0.00 0.00 0.00 4.02
4803 4868 1.992557 GGATATGGGGCTTGGGTCATA 59.007 52.381 0.00 0.00 0.00 2.15
4805 4870 3.785887 GGATATGGGGCTTGGGTCATATA 59.214 47.826 0.00 0.00 34.22 0.86
4806 4871 4.416848 GGATATGGGGCTTGGGTCATATAT 59.583 45.833 0.00 0.00 34.22 0.86
4807 4872 5.610982 GGATATGGGGCTTGGGTCATATATA 59.389 44.000 0.00 0.00 34.22 0.86
4808 4873 6.240002 GGATATGGGGCTTGGGTCATATATAG 60.240 46.154 0.00 0.00 34.22 1.31
4809 4874 3.881871 TGGGGCTTGGGTCATATATAGT 58.118 45.455 0.00 0.00 0.00 2.12
4810 4875 3.844211 TGGGGCTTGGGTCATATATAGTC 59.156 47.826 0.00 0.00 0.00 2.59
4811 4876 3.200165 GGGGCTTGGGTCATATATAGTCC 59.800 52.174 0.00 0.00 0.00 3.85
4812 4877 4.104831 GGGCTTGGGTCATATATAGTCCT 58.895 47.826 0.00 0.00 0.00 3.85
4813 4878 4.080863 GGGCTTGGGTCATATATAGTCCTG 60.081 50.000 0.00 0.00 0.00 3.86
4814 4879 4.080863 GGCTTGGGTCATATATAGTCCTGG 60.081 50.000 0.00 0.00 0.00 4.45
4815 4880 4.777896 GCTTGGGTCATATATAGTCCTGGA 59.222 45.833 0.00 0.00 0.00 3.86
4816 4881 5.248477 GCTTGGGTCATATATAGTCCTGGAA 59.752 44.000 0.00 0.00 0.00 3.53
4818 4883 7.496346 TTGGGTCATATATAGTCCTGGAATC 57.504 40.000 0.00 0.00 0.00 2.52
4820 4885 7.256399 TGGGTCATATATAGTCCTGGAATCTT 58.744 38.462 0.00 0.00 0.00 2.40
4822 4887 8.606830 GGGTCATATATAGTCCTGGAATCTTTT 58.393 37.037 0.00 0.00 0.00 2.27
4829 4894 5.438761 AGTCCTGGAATCTTTTTGAAACG 57.561 39.130 0.00 0.00 0.00 3.60
4830 4895 5.130350 AGTCCTGGAATCTTTTTGAAACGA 58.870 37.500 0.00 0.00 0.00 3.85
4831 4896 5.592688 AGTCCTGGAATCTTTTTGAAACGAA 59.407 36.000 0.00 0.00 0.00 3.85
4832 4897 5.915196 GTCCTGGAATCTTTTTGAAACGAAG 59.085 40.000 0.00 0.00 0.00 3.79
4833 4898 5.009610 TCCTGGAATCTTTTTGAAACGAAGG 59.990 40.000 0.00 0.00 0.00 3.46
4836 4901 5.047188 GGAATCTTTTTGAAACGAAGGCAA 58.953 37.500 0.00 0.00 0.00 4.52
4839 4904 6.588348 ATCTTTTTGAAACGAAGGCAAAAG 57.412 33.333 0.00 0.00 41.02 2.27
4840 4905 5.715070 TCTTTTTGAAACGAAGGCAAAAGA 58.285 33.333 10.44 10.44 41.02 2.52
4842 4907 6.816140 TCTTTTTGAAACGAAGGCAAAAGATT 59.184 30.769 10.44 0.00 41.02 2.40
4843 4908 6.976636 TTTTGAAACGAAGGCAAAAGATTT 57.023 29.167 0.00 0.00 36.80 2.17
4844 4909 8.480643 TTTTTGAAACGAAGGCAAAAGATTTA 57.519 26.923 0.00 0.00 41.02 1.40
4845 4910 7.458038 TTTGAAACGAAGGCAAAAGATTTAC 57.542 32.000 0.00 0.00 0.00 2.01
4846 4911 6.385649 TGAAACGAAGGCAAAAGATTTACT 57.614 33.333 0.00 0.00 0.00 2.24
4847 4912 6.801575 TGAAACGAAGGCAAAAGATTTACTT 58.198 32.000 0.00 0.00 40.98 2.24
4848 4913 6.915843 TGAAACGAAGGCAAAAGATTTACTTC 59.084 34.615 0.00 0.00 37.93 3.01
4849 4914 6.385649 AACGAAGGCAAAAGATTTACTTCA 57.614 33.333 14.39 0.00 37.93 3.02
4851 4916 6.612306 ACGAAGGCAAAAGATTTACTTCATC 58.388 36.000 14.39 0.00 37.93 2.92
4852 4917 5.734498 CGAAGGCAAAAGATTTACTTCATCG 59.266 40.000 14.39 0.00 37.93 3.84
4853 4918 6.402118 CGAAGGCAAAAGATTTACTTCATCGA 60.402 38.462 14.39 0.00 37.93 3.59
4854 4919 7.396540 AAGGCAAAAGATTTACTTCATCGAT 57.603 32.000 0.00 0.00 37.93 3.59
4855 4920 7.396540 AGGCAAAAGATTTACTTCATCGATT 57.603 32.000 0.00 0.00 37.93 3.34
4856 4921 8.506168 AGGCAAAAGATTTACTTCATCGATTA 57.494 30.769 0.00 0.00 37.93 1.75
4858 4923 9.736023 GGCAAAAGATTTACTTCATCGATTAAT 57.264 29.630 0.00 0.00 37.93 1.40
4894 5153 9.474920 AAAAAGAATTGCTCAATTAATTGACGA 57.525 25.926 23.86 19.46 41.51 4.20
4898 5157 9.474920 AGAATTGCTCAATTAATTGACGAAAAA 57.525 25.926 23.86 14.55 41.51 1.94
4904 5163 9.294030 GCTCAATTAATTGACGAAAAATCAGAT 57.706 29.630 23.86 0.00 41.51 2.90
4912 5171 9.757227 AATTGACGAAAAATCAGATAAAAACCA 57.243 25.926 0.00 0.00 0.00 3.67
4913 5172 9.757227 ATTGACGAAAAATCAGATAAAAACCAA 57.243 25.926 0.00 0.00 0.00 3.67
4914 5173 9.757227 TTGACGAAAAATCAGATAAAAACCAAT 57.243 25.926 0.00 0.00 0.00 3.16
4923 5182 9.927668 AATCAGATAAAAACCAATACAAACTGG 57.072 29.630 0.00 0.00 38.77 4.00
4924 5183 8.698973 TCAGATAAAAACCAATACAAACTGGA 57.301 30.769 0.00 0.00 36.49 3.86
4925 5184 9.308000 TCAGATAAAAACCAATACAAACTGGAT 57.692 29.630 0.00 0.00 36.49 3.41
4955 5274 6.440647 TCCAGGAATCTTCACTATTACTGTGT 59.559 38.462 7.15 0.00 41.75 3.72
4961 5280 9.388346 GAATCTTCACTATTACTGTGTCTATCG 57.612 37.037 0.00 0.00 36.83 2.92
4971 5290 2.919859 CTGTGTCTATCGTTGCTGTCAG 59.080 50.000 0.00 0.00 0.00 3.51
4972 5291 2.556622 TGTGTCTATCGTTGCTGTCAGA 59.443 45.455 3.32 0.00 0.00 3.27
5010 5330 2.717639 ACAGCCCAGCTAAATTCGAT 57.282 45.000 0.00 0.00 36.40 3.59
5014 5334 3.129287 CAGCCCAGCTAAATTCGATGTTT 59.871 43.478 0.00 0.00 36.40 2.83
5015 5335 3.129287 AGCCCAGCTAAATTCGATGTTTG 59.871 43.478 6.57 0.00 36.99 2.93
5030 5350 6.744112 TCGATGTTTGACATAAAGCCTTTTT 58.256 32.000 0.00 0.00 39.27 1.94
5074 5394 3.740832 GCCTGCACTTTTTGTTGGAATAC 59.259 43.478 0.00 0.00 0.00 1.89
5087 5407 8.642935 TTTGTTGGAATACAATAACCTCATCA 57.357 30.769 0.00 0.00 39.47 3.07
5088 5408 7.864108 TGTTGGAATACAATAACCTCATCAG 57.136 36.000 0.00 0.00 41.95 2.90
5089 5409 6.318648 TGTTGGAATACAATAACCTCATCAGC 59.681 38.462 0.00 0.00 41.95 4.26
5090 5410 6.252599 TGGAATACAATAACCTCATCAGCT 57.747 37.500 0.00 0.00 0.00 4.24
5091 5411 7.373617 TGGAATACAATAACCTCATCAGCTA 57.626 36.000 0.00 0.00 0.00 3.32
5092 5412 7.801104 TGGAATACAATAACCTCATCAGCTAA 58.199 34.615 0.00 0.00 0.00 3.09
5093 5413 7.933577 TGGAATACAATAACCTCATCAGCTAAG 59.066 37.037 0.00 0.00 0.00 2.18
5094 5414 7.095017 GGAATACAATAACCTCATCAGCTAAGC 60.095 40.741 0.00 0.00 0.00 3.09
5095 5415 5.365021 ACAATAACCTCATCAGCTAAGCT 57.635 39.130 0.00 0.00 40.77 3.74
5096 5416 6.485830 ACAATAACCTCATCAGCTAAGCTA 57.514 37.500 0.00 0.00 36.40 3.32
5097 5417 6.889198 ACAATAACCTCATCAGCTAAGCTAA 58.111 36.000 0.00 0.00 36.40 3.09
5098 5418 6.989169 ACAATAACCTCATCAGCTAAGCTAAG 59.011 38.462 0.00 0.00 36.40 2.18
5099 5419 3.467374 ACCTCATCAGCTAAGCTAAGC 57.533 47.619 0.00 0.00 43.11 3.09
5147 5467 3.189702 ACGAAAATGGTTGGTACGGAATG 59.810 43.478 0.00 0.00 0.00 2.67
5155 5475 1.153229 GGTACGGAATGCACCTCCC 60.153 63.158 10.40 0.00 0.00 4.30
5194 5514 6.833880 CGCACTTAACAAAAATGAAAAACGAG 59.166 34.615 0.00 0.00 0.00 4.18
5217 5537 1.680735 TCGACAACTTTGCTGCCAATT 59.319 42.857 0.00 0.00 0.00 2.32
5236 5556 5.050159 CCAATTTTTCCCGCAGAAAGAAAAG 60.050 40.000 0.00 0.00 45.11 2.27
5237 5557 3.726291 TTTTCCCGCAGAAAGAAAAGG 57.274 42.857 0.00 0.00 45.11 3.11
5257 5577 9.912634 GAAAAGGCTTTGCTAATAATATATGCA 57.087 29.630 14.19 0.00 0.00 3.96
5258 5578 9.696917 AAAAGGCTTTGCTAATAATATATGCAC 57.303 29.630 14.19 0.00 33.13 4.57
5266 5586 7.471721 TGCTAATAATATATGCACGGAAATGC 58.528 34.615 0.00 0.00 46.32 3.56
5275 5595 7.928307 ATATGCACGGAAATGCTAATAATCT 57.072 32.000 0.00 0.00 46.28 2.40
5276 5596 5.422666 TGCACGGAAATGCTAATAATCTG 57.577 39.130 0.00 0.00 46.28 2.90
5278 5598 5.764686 TGCACGGAAATGCTAATAATCTGAT 59.235 36.000 0.00 0.00 46.28 2.90
5279 5599 6.082338 GCACGGAAATGCTAATAATCTGATG 58.918 40.000 0.00 0.00 42.62 3.07
5280 5600 6.293626 GCACGGAAATGCTAATAATCTGATGT 60.294 38.462 0.00 0.00 42.62 3.06
5281 5601 7.293745 CACGGAAATGCTAATAATCTGATGTC 58.706 38.462 0.00 0.00 0.00 3.06
5282 5602 6.992123 ACGGAAATGCTAATAATCTGATGTCA 59.008 34.615 0.00 0.00 0.00 3.58
5283 5603 7.172190 ACGGAAATGCTAATAATCTGATGTCAG 59.828 37.037 3.61 3.61 45.08 3.51
5304 5624 7.716123 TGTCAGATTTTTGAGGCATGAAAAATT 59.284 29.630 19.49 9.23 40.29 1.82
5306 5626 7.173562 TCAGATTTTTGAGGCATGAAAAATTGG 59.826 33.333 19.49 14.98 40.29 3.16
5309 5629 4.952071 TTGAGGCATGAAAAATTGGACA 57.048 36.364 0.00 0.00 0.00 4.02
5321 5641 5.963176 AAAATTGGACATTTTTCATGCCC 57.037 34.783 0.00 0.00 0.00 5.36
5332 5652 9.328845 GACATTTTTCATGCCCATTTATATTGT 57.671 29.630 0.00 0.00 0.00 2.71
5350 5670 4.355543 TTGTCGCAAGGATAGCAAATTC 57.644 40.909 0.00 0.00 38.47 2.17
5355 5675 5.064707 GTCGCAAGGATAGCAAATTCAGTTA 59.935 40.000 0.00 0.00 38.47 2.24
5361 5681 4.319118 GGATAGCAAATTCAGTTAGCGAGC 60.319 45.833 0.00 0.00 0.00 5.03
5364 5684 2.762472 CAAATTCAGTTAGCGAGCACG 58.238 47.619 0.00 0.00 42.93 5.34
5365 5685 1.359848 AATTCAGTTAGCGAGCACGG 58.640 50.000 5.52 0.00 40.15 4.94
5383 5703 2.871633 ACGGCAATTTTCTGGCAAAAAG 59.128 40.909 11.31 0.67 41.82 2.27
5385 5705 3.184986 CGGCAATTTTCTGGCAAAAAGAG 59.815 43.478 11.31 8.29 41.82 2.85
5388 5708 5.471116 GGCAATTTTCTGGCAAAAAGAGAAT 59.529 36.000 11.31 0.83 41.38 2.40
5389 5709 6.368213 GCAATTTTCTGGCAAAAAGAGAATG 58.632 36.000 11.31 7.62 31.05 2.67
5390 5710 6.203338 GCAATTTTCTGGCAAAAAGAGAATGA 59.797 34.615 11.31 0.00 31.05 2.57
5391 5711 7.254863 GCAATTTTCTGGCAAAAAGAGAATGAA 60.255 33.333 11.31 0.00 31.05 2.57
5392 5712 7.719778 ATTTTCTGGCAAAAAGAGAATGAAC 57.280 32.000 11.31 0.00 29.86 3.18
5393 5713 6.469782 TTTCTGGCAAAAAGAGAATGAACT 57.530 33.333 0.00 0.00 0.00 3.01
5412 5737 1.741706 CTGAGAATTTGCCATGCTCGT 59.258 47.619 0.00 0.00 0.00 4.18
5414 5739 1.064654 GAGAATTTGCCATGCTCGTCC 59.935 52.381 0.00 0.00 0.00 4.79
5447 5772 6.164876 TGCCATCCTCAACAAAACATAATTG 58.835 36.000 0.00 0.00 0.00 2.32
5448 5773 5.581874 GCCATCCTCAACAAAACATAATTGG 59.418 40.000 0.00 0.00 32.02 3.16
5449 5774 6.700352 CCATCCTCAACAAAACATAATTGGT 58.300 36.000 0.00 0.00 32.02 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.765695 TTATTTGCTCAGACTCCATCTTTTT 57.234 32.000 0.00 0.00 34.41 1.94
1 2 7.951347 ATTATTTGCTCAGACTCCATCTTTT 57.049 32.000 0.00 0.00 34.41 2.27
2 3 7.951347 AATTATTTGCTCAGACTCCATCTTT 57.049 32.000 0.00 0.00 34.41 2.52
3 4 7.951347 AAATTATTTGCTCAGACTCCATCTT 57.049 32.000 0.00 0.00 34.41 2.40
4 5 7.951347 AAAATTATTTGCTCAGACTCCATCT 57.049 32.000 0.00 0.00 38.66 2.90
5 6 7.704047 GGAAAAATTATTTGCTCAGACTCCATC 59.296 37.037 0.00 0.00 0.00 3.51
8 9 7.163001 AGGAAAAATTATTTGCTCAGACTCC 57.837 36.000 0.00 0.00 0.00 3.85
139 142 9.039870 TGCTTTGGTTTGTAAGAATTTTATGTG 57.960 29.630 0.00 0.00 0.00 3.21
141 144 8.223100 GCTGCTTTGGTTTGTAAGAATTTTATG 58.777 33.333 0.00 0.00 0.00 1.90
175 178 1.071071 GTACAAGTGTGTGCACCCCTA 59.929 52.381 15.69 0.00 46.35 3.53
176 179 0.179029 GTACAAGTGTGTGCACCCCT 60.179 55.000 15.69 4.19 46.35 4.79
177 180 1.503818 CGTACAAGTGTGTGCACCCC 61.504 60.000 15.69 5.46 46.35 4.95
218 221 2.287608 GCAAACTCTTTTTCTGGTCCGG 60.288 50.000 0.00 0.00 0.00 5.14
220 223 4.590850 ATGCAAACTCTTTTTCTGGTCC 57.409 40.909 0.00 0.00 0.00 4.46
232 235 4.088496 GTGCGTGAAACAATATGCAAACTC 59.912 41.667 0.00 0.00 40.18 3.01
302 306 4.114997 GGCGCGTGGTCATTTGGG 62.115 66.667 8.43 0.00 0.00 4.12
333 337 1.215423 AGGGCCTCTCTCTCTCTCTTC 59.785 57.143 0.00 0.00 0.00 2.87
334 338 1.308877 AGGGCCTCTCTCTCTCTCTT 58.691 55.000 0.00 0.00 0.00 2.85
397 407 9.927668 CTTCCTTTCTTCCAAAATATAAAAGCA 57.072 29.630 0.00 0.00 0.00 3.91
409 419 8.437575 AGACAATTAGTACTTCCTTTCTTCCAA 58.562 33.333 0.00 0.00 0.00 3.53
452 474 8.732531 CATCAAAAATACCCTTTCAATTGCAAT 58.267 29.630 5.99 5.99 0.00 3.56
455 477 7.903995 TCATCAAAAATACCCTTTCAATTGC 57.096 32.000 0.00 0.00 0.00 3.56
533 555 8.495148 GCTTTGAAACAACTCAAAAGAAAAGAA 58.505 29.630 0.00 0.00 43.03 2.52
534 556 7.655328 TGCTTTGAAACAACTCAAAAGAAAAGA 59.345 29.630 0.00 0.00 43.03 2.52
581 603 9.740239 GTGACATATGTGATAAGCAATTCAAAT 57.260 29.630 14.43 0.00 0.00 2.32
582 604 7.909641 CGTGACATATGTGATAAGCAATTCAAA 59.090 33.333 14.43 0.00 0.00 2.69
583 605 7.065683 ACGTGACATATGTGATAAGCAATTCAA 59.934 33.333 14.43 0.00 0.00 2.69
584 606 6.538381 ACGTGACATATGTGATAAGCAATTCA 59.462 34.615 14.43 0.00 0.00 2.57
585 607 6.948353 ACGTGACATATGTGATAAGCAATTC 58.052 36.000 14.43 0.00 0.00 2.17
586 608 6.925610 ACGTGACATATGTGATAAGCAATT 57.074 33.333 14.43 0.00 0.00 2.32
596 618 5.794687 ATGTTTACCACGTGACATATGTG 57.205 39.130 19.30 1.19 44.31 3.21
597 619 7.908827 TTTATGTTTACCACGTGACATATGT 57.091 32.000 21.52 8.43 35.58 2.29
602 624 9.448294 GTTTTAATTTATGTTTACCACGTGACA 57.552 29.630 19.30 13.87 0.00 3.58
603 625 8.904712 GGTTTTAATTTATGTTTACCACGTGAC 58.095 33.333 19.30 7.72 0.00 3.67
604 626 7.802251 CGGTTTTAATTTATGTTTACCACGTGA 59.198 33.333 19.30 0.00 0.00 4.35
605 627 7.590689 ACGGTTTTAATTTATGTTTACCACGTG 59.409 33.333 9.08 9.08 0.00 4.49
606 628 7.647228 ACGGTTTTAATTTATGTTTACCACGT 58.353 30.769 0.00 0.00 0.00 4.49
607 629 7.802251 TGACGGTTTTAATTTATGTTTACCACG 59.198 33.333 0.00 0.00 0.00 4.94
608 630 9.460906 TTGACGGTTTTAATTTATGTTTACCAC 57.539 29.630 0.00 0.00 0.00 4.16
615 637 8.938047 CGTAGTTTGACGGTTTTAATTTATGT 57.062 30.769 0.00 0.00 39.19 2.29
629 651 6.784227 GTTGAATACAAAGACGTAGTTTGACG 59.216 38.462 23.07 4.24 41.93 4.35
656 678 7.574217 TTTGAAGTGCAAGACGTAGTTTTTCTT 60.574 33.333 0.00 0.00 35.48 2.52
657 679 6.128117 TTTGAAGTGCAAGACGTAGTTTTTCT 60.128 34.615 0.00 0.00 35.48 2.52
658 680 6.025280 TTTGAAGTGCAAGACGTAGTTTTTC 58.975 36.000 0.00 0.00 35.48 2.29
725 748 7.035004 TGGAATAAATAAATGTCACTGCTTGC 58.965 34.615 0.00 0.00 0.00 4.01
765 788 9.478019 CGGACATCGAAGATAATAAATAAATGC 57.522 33.333 0.00 0.00 45.12 3.56
871 894 4.257654 TTGCTTTGGGTCGGGCGA 62.258 61.111 0.00 0.00 0.00 5.54
877 900 2.096013 GCTAAGATCGTTGCTTTGGGTC 59.904 50.000 7.73 0.00 0.00 4.46
905 928 1.001974 TCTGGGACGTTGATGGTGAAG 59.998 52.381 0.00 0.00 0.00 3.02
915 938 1.590147 GTCGTGGATCTGGGACGTT 59.410 57.895 0.00 0.00 34.69 3.99
965 988 2.030457 CGATGTGTAAATTCGTGGGAGC 59.970 50.000 0.00 0.00 0.00 4.70
973 996 2.354821 GGAGGGCACGATGTGTAAATTC 59.645 50.000 0.00 0.00 35.75 2.17
979 1002 4.760047 GCGGAGGGCACGATGTGT 62.760 66.667 0.00 0.00 42.87 3.72
1030 1053 0.930726 GGAGAGGAGAAGGGAGGAGA 59.069 60.000 0.00 0.00 0.00 3.71
1054 1077 3.835478 TGAGGAAGAAGAAGAGGAGGA 57.165 47.619 0.00 0.00 0.00 3.71
1055 1078 3.387699 GGATGAGGAAGAAGAAGAGGAGG 59.612 52.174 0.00 0.00 0.00 4.30
1056 1079 3.387699 GGGATGAGGAAGAAGAAGAGGAG 59.612 52.174 0.00 0.00 0.00 3.69
1057 1080 3.379452 GGGATGAGGAAGAAGAAGAGGA 58.621 50.000 0.00 0.00 0.00 3.71
1058 1081 2.437651 GGGGATGAGGAAGAAGAAGAGG 59.562 54.545 0.00 0.00 0.00 3.69
1059 1082 3.383223 AGGGGATGAGGAAGAAGAAGAG 58.617 50.000 0.00 0.00 0.00 2.85
1355 1378 3.304559 TCGTCGCAAAACACCAAATTTTG 59.695 39.130 1.99 1.99 45.68 2.44
1393 1416 2.215907 AGATCTCCGTGAAATGCTCG 57.784 50.000 0.00 0.00 0.00 5.03
1432 1455 2.233431 CACTGACCTGAGAGAAGGAAGG 59.767 54.545 0.00 0.00 40.02 3.46
1501 1526 4.462834 TCCTATCTTCTCGTTCTTGCAGAA 59.537 41.667 0.00 0.00 0.00 3.02
1555 1584 1.124477 CCTCCACCTCCTCCATAGCC 61.124 65.000 0.00 0.00 0.00 3.93
1558 1587 0.031111 CCACCTCCACCTCCTCCATA 60.031 60.000 0.00 0.00 0.00 2.74
1835 1864 1.448540 CACTCCCGGACATGAGCAC 60.449 63.158 0.73 0.00 31.65 4.40
1923 1955 0.109597 GACCAAATCAAGGCTGCGTG 60.110 55.000 0.00 0.00 0.00 5.34
1933 1965 2.156917 CTGCTTGAGCTGACCAAATCA 58.843 47.619 4.44 0.00 41.71 2.57
2140 2172 1.115467 AAGACCTCGGCGATGAGATT 58.885 50.000 18.96 7.21 38.28 2.40
2367 2399 7.309744 CCAACCCTTATAAAAGAATCACAGCAA 60.310 37.037 0.00 0.00 34.37 3.91
2786 2820 1.992557 TGGTGCTAGGAAAAGGGTGAT 59.007 47.619 0.00 0.00 0.00 3.06
2883 2917 4.752101 CCCTTTTTCACAGACAGTAGTGAG 59.248 45.833 4.09 0.00 44.65 3.51
2885 2919 4.703897 TCCCTTTTTCACAGACAGTAGTG 58.296 43.478 0.00 0.00 37.10 2.74
2886 2920 5.071788 TGATCCCTTTTTCACAGACAGTAGT 59.928 40.000 0.00 0.00 0.00 2.73
2887 2921 5.551233 TGATCCCTTTTTCACAGACAGTAG 58.449 41.667 0.00 0.00 0.00 2.57
2888 2922 5.071788 ACTGATCCCTTTTTCACAGACAGTA 59.928 40.000 0.00 0.00 34.01 2.74
2889 2923 4.141390 ACTGATCCCTTTTTCACAGACAGT 60.141 41.667 0.00 0.00 0.00 3.55
2890 2924 4.392940 ACTGATCCCTTTTTCACAGACAG 58.607 43.478 0.00 0.00 0.00 3.51
2891 2925 4.141505 TGACTGATCCCTTTTTCACAGACA 60.142 41.667 0.00 0.00 0.00 3.41
2892 2926 4.214332 GTGACTGATCCCTTTTTCACAGAC 59.786 45.833 0.00 0.00 34.71 3.51
2893 2927 4.141505 TGTGACTGATCCCTTTTTCACAGA 60.142 41.667 0.00 0.00 38.68 3.41
2894 2928 4.136796 TGTGACTGATCCCTTTTTCACAG 58.863 43.478 0.00 0.00 38.68 3.66
2895 2929 4.136796 CTGTGACTGATCCCTTTTTCACA 58.863 43.478 0.00 0.00 40.70 3.58
2896 2930 3.503748 CCTGTGACTGATCCCTTTTTCAC 59.496 47.826 0.00 0.00 35.08 3.18
2897 2931 3.498481 CCCTGTGACTGATCCCTTTTTCA 60.498 47.826 0.00 0.00 0.00 2.69
2898 2932 3.084786 CCCTGTGACTGATCCCTTTTTC 58.915 50.000 0.00 0.00 0.00 2.29
2905 2939 2.160721 TAGGTCCCTGTGACTGATCC 57.839 55.000 0.00 0.00 43.89 3.36
2915 2949 6.766429 ACAAGTTAACTACTTTAGGTCCCTG 58.234 40.000 8.92 1.14 44.73 4.45
3023 3057 3.960102 CCATTAAGGGCAGGCATTAAAGA 59.040 43.478 16.68 0.00 0.00 2.52
3149 3183 1.670083 GGTACAAGTGGCCGGACAC 60.670 63.158 34.12 34.12 41.63 3.67
3150 3184 2.141448 TGGTACAAGTGGCCGGACA 61.141 57.895 5.41 5.41 31.92 4.02
3151 3185 2.745037 TGGTACAAGTGGCCGGAC 59.255 61.111 5.05 0.56 31.92 4.79
3164 3199 1.295020 AGTAGCCCCTGCATTTGGTA 58.705 50.000 0.00 0.00 41.13 3.25
3224 3259 4.228567 TCCACGCACCGCTCAACA 62.229 61.111 0.00 0.00 0.00 3.33
3322 3357 1.375523 GGCGATTGGACGGTTGTCT 60.376 57.895 0.00 0.00 44.83 3.41
3340 3375 4.530857 ATCGAAAGGGGCGGCGAG 62.531 66.667 12.98 0.00 36.12 5.03
3403 3438 2.627945 AGCTTCACTTTCACACGAACA 58.372 42.857 0.00 0.00 0.00 3.18
3421 3456 1.167155 TGAGATCCGCGAGACCTAGC 61.167 60.000 8.23 0.00 0.00 3.42
3474 3509 4.850963 AGCTCATTAGATTCCCAGATGGAT 59.149 41.667 0.00 0.00 44.66 3.41
3475 3510 4.041321 CAGCTCATTAGATTCCCAGATGGA 59.959 45.833 0.00 0.00 43.18 3.41
3476 3511 4.325119 CAGCTCATTAGATTCCCAGATGG 58.675 47.826 0.00 0.00 0.00 3.51
3479 3514 2.105477 GGCAGCTCATTAGATTCCCAGA 59.895 50.000 0.00 0.00 0.00 3.86
3567 3602 2.075338 GCAGAGGAGAAGAACAGCTTG 58.925 52.381 0.00 0.00 36.83 4.01
3638 3676 3.220110 CCAGCATATGCATGTTCTTCCT 58.780 45.455 28.62 1.58 45.16 3.36
3691 3729 0.401395 AAACACACTCCCTCCCTCCA 60.401 55.000 0.00 0.00 0.00 3.86
3694 3732 1.518367 TTCAAACACACTCCCTCCCT 58.482 50.000 0.00 0.00 0.00 4.20
3837 3876 4.085619 CGATAAAGCAAAAGCAACACACAC 60.086 41.667 0.00 0.00 0.00 3.82
3859 3898 6.259550 AGAGAAAACAAATCCCATCTTTCG 57.740 37.500 0.00 0.00 0.00 3.46
3909 3949 0.744281 CAACACCACCACCACCTTTC 59.256 55.000 0.00 0.00 0.00 2.62
3923 3963 5.295787 TCCTAATGTGTCAGTTTGTCAACAC 59.704 40.000 0.00 0.00 41.80 3.32
3993 4037 4.313282 TGAAGTTGAAGCATGACTGAGAG 58.687 43.478 0.00 0.00 0.00 3.20
4064 4108 4.989277 TCTTATGAACCCCATCCATGATG 58.011 43.478 0.00 0.00 39.52 3.07
4065 4109 4.508047 GCTCTTATGAACCCCATCCATGAT 60.508 45.833 0.00 0.00 36.71 2.45
4067 4111 3.152341 GCTCTTATGAACCCCATCCATG 58.848 50.000 0.00 0.00 36.71 3.66
4068 4112 3.059097 AGCTCTTATGAACCCCATCCAT 58.941 45.455 0.00 0.00 36.71 3.41
4069 4113 2.439507 GAGCTCTTATGAACCCCATCCA 59.560 50.000 6.43 0.00 36.71 3.41
4070 4114 2.708325 AGAGCTCTTATGAACCCCATCC 59.292 50.000 11.45 0.00 36.71 3.51
4071 4115 3.645687 AGAGAGCTCTTATGAACCCCATC 59.354 47.826 19.36 0.00 36.31 3.51
4072 4116 3.645687 GAGAGAGCTCTTATGAACCCCAT 59.354 47.826 19.36 0.00 40.61 4.00
4073 4117 3.034635 GAGAGAGCTCTTATGAACCCCA 58.965 50.000 19.36 0.00 40.61 4.96
4116 4176 8.482943 ACTCCTAGTACATGTTATGCAAATGTA 58.517 33.333 2.30 9.53 36.08 2.29
4127 4187 6.071278 GGAAGAACTGACTCCTAGTACATGTT 60.071 42.308 2.30 0.00 0.00 2.71
4132 4192 3.700539 GGGGAAGAACTGACTCCTAGTAC 59.299 52.174 0.00 0.00 0.00 2.73
4135 4195 2.821437 TGGGGAAGAACTGACTCCTAG 58.179 52.381 0.00 0.00 0.00 3.02
4139 4199 3.771577 TTCTTGGGGAAGAACTGACTC 57.228 47.619 0.00 0.00 34.15 3.36
4140 4200 4.519906 TTTTCTTGGGGAAGAACTGACT 57.480 40.909 0.00 0.00 38.41 3.41
4141 4201 5.069119 ACATTTTTCTTGGGGAAGAACTGAC 59.931 40.000 0.00 0.00 38.41 3.51
4142 4202 5.208121 ACATTTTTCTTGGGGAAGAACTGA 58.792 37.500 0.00 0.00 38.41 3.41
4162 4222 9.072294 GCGCTTACATTTTTATAACAGAAACAT 57.928 29.630 0.00 0.00 0.00 2.71
4190 4250 8.641541 AGTTCATCTTGAATTTTCCTAAGCAAA 58.358 29.630 0.00 0.00 38.79 3.68
4196 4256 7.833682 TGGCATAGTTCATCTTGAATTTTCCTA 59.166 33.333 0.00 0.00 38.79 2.94
4231 4291 8.682710 GGGAGCACTGATAAAACATTATTGTAA 58.317 33.333 0.00 0.00 34.06 2.41
4264 4324 4.638421 TGTTCAATTGTCAACCTCTCGTTT 59.362 37.500 5.13 0.00 29.93 3.60
4315 4375 3.551496 TTCAGGCAGCAAGACCCCG 62.551 63.158 0.00 0.00 0.00 5.73
4333 4393 1.849039 ACCTAGCCTTCCATGATTGCT 59.151 47.619 0.00 0.00 36.11 3.91
4576 4639 9.759259 CCTAGCAAAAAGAAAAAGAAAAACAAG 57.241 29.630 0.00 0.00 0.00 3.16
4579 4642 9.366216 TCTCCTAGCAAAAAGAAAAAGAAAAAC 57.634 29.630 0.00 0.00 0.00 2.43
4580 4643 9.936759 TTCTCCTAGCAAAAAGAAAAAGAAAAA 57.063 25.926 0.00 0.00 0.00 1.94
4581 4644 9.936759 TTTCTCCTAGCAAAAAGAAAAAGAAAA 57.063 25.926 0.00 0.00 35.43 2.29
4582 4645 9.936759 TTTTCTCCTAGCAAAAAGAAAAAGAAA 57.063 25.926 12.03 0.00 41.97 2.52
4583 4646 9.936759 TTTTTCTCCTAGCAAAAAGAAAAAGAA 57.063 25.926 18.10 5.22 45.55 2.52
4588 4651 9.965824 CTACATTTTTCTCCTAGCAAAAAGAAA 57.034 29.630 9.64 0.00 35.50 2.52
4589 4652 8.576442 CCTACATTTTTCTCCTAGCAAAAAGAA 58.424 33.333 9.64 0.00 35.50 2.52
4590 4653 7.942341 TCCTACATTTTTCTCCTAGCAAAAAGA 59.058 33.333 9.64 2.05 35.50 2.52
4591 4654 8.110860 TCCTACATTTTTCTCCTAGCAAAAAG 57.889 34.615 9.64 0.00 35.50 2.27
4592 4655 7.309194 GCTCCTACATTTTTCTCCTAGCAAAAA 60.309 37.037 7.34 7.34 36.25 1.94
4593 4656 6.151144 GCTCCTACATTTTTCTCCTAGCAAAA 59.849 38.462 0.00 0.00 0.00 2.44
4594 4657 5.648092 GCTCCTACATTTTTCTCCTAGCAAA 59.352 40.000 0.00 0.00 0.00 3.68
4595 4658 5.186198 GCTCCTACATTTTTCTCCTAGCAA 58.814 41.667 0.00 0.00 0.00 3.91
4596 4659 4.225042 TGCTCCTACATTTTTCTCCTAGCA 59.775 41.667 0.00 0.00 34.14 3.49
4597 4660 4.770795 TGCTCCTACATTTTTCTCCTAGC 58.229 43.478 0.00 0.00 0.00 3.42
4598 4661 7.872113 AAATGCTCCTACATTTTTCTCCTAG 57.128 36.000 0.00 0.00 45.63 3.02
4608 4671 5.716228 TGACCAAATGAAATGCTCCTACATT 59.284 36.000 0.00 0.00 42.01 2.71
4611 4674 5.393461 CCTTGACCAAATGAAATGCTCCTAC 60.393 44.000 0.00 0.00 0.00 3.18
4613 4676 3.512724 CCTTGACCAAATGAAATGCTCCT 59.487 43.478 0.00 0.00 0.00 3.69
4615 4678 3.511146 TCCCTTGACCAAATGAAATGCTC 59.489 43.478 0.00 0.00 0.00 4.26
4636 4700 5.107220 CCATGCTTGAAGAAATGCTTGTTTC 60.107 40.000 0.00 2.81 36.83 2.78
4643 4707 3.814005 ATCCCATGCTTGAAGAAATGC 57.186 42.857 0.00 0.00 0.00 3.56
4659 4723 4.515567 GCAGTACTATGTTTGCCTAATCCC 59.484 45.833 0.00 0.00 0.00 3.85
4680 4744 2.169561 TCCACACACACAGAAAGTAGCA 59.830 45.455 0.00 0.00 0.00 3.49
4689 4753 1.586422 CTTGACCTCCACACACACAG 58.414 55.000 0.00 0.00 0.00 3.66
4696 4760 0.104672 TCTTCCCCTTGACCTCCACA 60.105 55.000 0.00 0.00 0.00 4.17
4697 4761 1.290134 ATCTTCCCCTTGACCTCCAC 58.710 55.000 0.00 0.00 0.00 4.02
4698 4762 2.059756 AATCTTCCCCTTGACCTCCA 57.940 50.000 0.00 0.00 0.00 3.86
4700 4764 5.180810 AGTTAAATCTTCCCCTTGACCTC 57.819 43.478 0.00 0.00 0.00 3.85
4701 4765 5.074515 TGAAGTTAAATCTTCCCCTTGACCT 59.925 40.000 4.00 0.00 41.96 3.85
4702 4766 5.321927 TGAAGTTAAATCTTCCCCTTGACC 58.678 41.667 4.00 0.00 41.96 4.02
4710 4775 5.714047 CCCTTGCTTGAAGTTAAATCTTCC 58.286 41.667 0.00 0.00 41.96 3.46
4734 4799 2.812591 CAGAATATGCAGGCTGGCTAAG 59.187 50.000 17.64 0.00 34.04 2.18
4735 4800 2.439135 TCAGAATATGCAGGCTGGCTAA 59.561 45.455 17.64 0.00 34.04 3.09
4736 4801 2.049372 TCAGAATATGCAGGCTGGCTA 58.951 47.619 17.64 4.11 34.04 3.93
4737 4802 0.841961 TCAGAATATGCAGGCTGGCT 59.158 50.000 17.64 0.00 34.04 4.75
4738 4803 0.950116 GTCAGAATATGCAGGCTGGC 59.050 55.000 17.64 9.25 0.00 4.85
4739 4804 2.617308 CAAGTCAGAATATGCAGGCTGG 59.383 50.000 17.64 0.00 0.00 4.85
4740 4805 2.033049 GCAAGTCAGAATATGCAGGCTG 59.967 50.000 10.94 10.94 38.63 4.85
4741 4806 2.295885 GCAAGTCAGAATATGCAGGCT 58.704 47.619 0.00 0.00 38.63 4.58
4742 4807 2.019249 TGCAAGTCAGAATATGCAGGC 58.981 47.619 0.00 0.00 43.32 4.85
4745 4810 3.083293 TGCTTGCAAGTCAGAATATGCA 58.917 40.909 26.55 12.88 46.21 3.96
4772 4837 3.063650 GCCCCATATCCCCCATATACAT 58.936 50.000 0.00 0.00 0.00 2.29
4773 4838 2.048580 AGCCCCATATCCCCCATATACA 59.951 50.000 0.00 0.00 0.00 2.29
4774 4839 2.789219 AGCCCCATATCCCCCATATAC 58.211 52.381 0.00 0.00 0.00 1.47
4775 4840 3.130450 CAAGCCCCATATCCCCCATATA 58.870 50.000 0.00 0.00 0.00 0.86
4776 4841 1.932338 CAAGCCCCATATCCCCCATAT 59.068 52.381 0.00 0.00 0.00 1.78
4778 4843 1.446267 CCAAGCCCCATATCCCCCAT 61.446 60.000 0.00 0.00 0.00 4.00
4779 4844 2.090644 CCAAGCCCCATATCCCCCA 61.091 63.158 0.00 0.00 0.00 4.96
4780 4845 2.854076 CCAAGCCCCATATCCCCC 59.146 66.667 0.00 0.00 0.00 5.40
4781 4846 2.081585 GACCCAAGCCCCATATCCCC 62.082 65.000 0.00 0.00 0.00 4.81
4782 4847 1.360393 TGACCCAAGCCCCATATCCC 61.360 60.000 0.00 0.00 0.00 3.85
4783 4848 0.779997 ATGACCCAAGCCCCATATCC 59.220 55.000 0.00 0.00 0.00 2.59
4785 4850 6.220329 ACTATATATGACCCAAGCCCCATAT 58.780 40.000 0.00 0.00 36.51 1.78
4787 4852 4.448431 ACTATATATGACCCAAGCCCCAT 58.552 43.478 0.00 0.00 0.00 4.00
4788 4853 3.844211 GACTATATATGACCCAAGCCCCA 59.156 47.826 0.00 0.00 0.00 4.96
4789 4854 3.200165 GGACTATATATGACCCAAGCCCC 59.800 52.174 0.00 0.00 0.00 5.80
4790 4855 4.080863 CAGGACTATATATGACCCAAGCCC 60.081 50.000 0.00 0.00 0.00 5.19
4791 4856 4.080863 CCAGGACTATATATGACCCAAGCC 60.081 50.000 0.00 0.00 0.00 4.35
4792 4857 4.777896 TCCAGGACTATATATGACCCAAGC 59.222 45.833 0.00 0.00 0.00 4.01
4793 4858 6.935240 TTCCAGGACTATATATGACCCAAG 57.065 41.667 0.00 0.00 0.00 3.61
4794 4859 7.256399 AGATTCCAGGACTATATATGACCCAA 58.744 38.462 0.00 0.00 0.00 4.12
4796 4861 7.741554 AAGATTCCAGGACTATATATGACCC 57.258 40.000 0.00 0.00 0.00 4.46
4803 4868 8.893727 CGTTTCAAAAAGATTCCAGGACTATAT 58.106 33.333 0.00 0.00 0.00 0.86
4805 4870 6.940298 TCGTTTCAAAAAGATTCCAGGACTAT 59.060 34.615 0.00 0.00 0.00 2.12
4806 4871 6.292923 TCGTTTCAAAAAGATTCCAGGACTA 58.707 36.000 0.00 0.00 0.00 2.59
4807 4872 5.130350 TCGTTTCAAAAAGATTCCAGGACT 58.870 37.500 0.00 0.00 0.00 3.85
4808 4873 5.432885 TCGTTTCAAAAAGATTCCAGGAC 57.567 39.130 0.00 0.00 0.00 3.85
4809 4874 5.009610 CCTTCGTTTCAAAAAGATTCCAGGA 59.990 40.000 0.00 0.00 28.43 3.86
4810 4875 5.222631 CCTTCGTTTCAAAAAGATTCCAGG 58.777 41.667 0.00 0.00 0.00 4.45
4811 4876 4.681483 GCCTTCGTTTCAAAAAGATTCCAG 59.319 41.667 0.00 0.00 0.00 3.86
4812 4877 4.098654 TGCCTTCGTTTCAAAAAGATTCCA 59.901 37.500 0.00 0.00 0.00 3.53
4813 4878 4.616953 TGCCTTCGTTTCAAAAAGATTCC 58.383 39.130 0.00 0.00 0.00 3.01
4814 4879 6.582437 TTTGCCTTCGTTTCAAAAAGATTC 57.418 33.333 0.00 0.00 0.00 2.52
4815 4880 6.816140 TCTTTTGCCTTCGTTTCAAAAAGATT 59.184 30.769 11.33 0.00 38.65 2.40
4816 4881 6.337356 TCTTTTGCCTTCGTTTCAAAAAGAT 58.663 32.000 11.33 0.00 38.65 2.40
4818 4883 6.588348 ATCTTTTGCCTTCGTTTCAAAAAG 57.412 33.333 0.00 0.00 38.65 2.27
4820 4885 6.976636 AAATCTTTTGCCTTCGTTTCAAAA 57.023 29.167 0.00 0.00 37.36 2.44
4822 4887 6.801575 AGTAAATCTTTTGCCTTCGTTTCAA 58.198 32.000 0.00 0.00 0.00 2.69
4823 4888 6.385649 AGTAAATCTTTTGCCTTCGTTTCA 57.614 33.333 0.00 0.00 0.00 2.69
4824 4889 6.915843 TGAAGTAAATCTTTTGCCTTCGTTTC 59.084 34.615 0.00 0.00 36.40 2.78
4825 4890 6.801575 TGAAGTAAATCTTTTGCCTTCGTTT 58.198 32.000 0.00 0.00 36.40 3.60
4826 4891 6.385649 TGAAGTAAATCTTTTGCCTTCGTT 57.614 33.333 0.00 0.00 36.40 3.85
4827 4892 6.575162 ATGAAGTAAATCTTTTGCCTTCGT 57.425 33.333 0.00 0.00 36.40 3.85
4829 4894 6.842163 TCGATGAAGTAAATCTTTTGCCTTC 58.158 36.000 0.00 0.00 36.40 3.46
4830 4895 6.817765 TCGATGAAGTAAATCTTTTGCCTT 57.182 33.333 0.00 0.00 36.40 4.35
4831 4896 7.396540 AATCGATGAAGTAAATCTTTTGCCT 57.603 32.000 0.00 0.00 36.40 4.75
4832 4897 9.736023 ATTAATCGATGAAGTAAATCTTTTGCC 57.264 29.630 0.00 0.00 36.40 4.52
4868 4933 9.474920 TCGTCAATTAATTGAGCAATTCTTTTT 57.525 25.926 27.26 0.82 46.44 1.94
4869 4934 9.474920 TTCGTCAATTAATTGAGCAATTCTTTT 57.525 25.926 27.26 2.89 46.44 2.27
4876 4941 8.809159 TGATTTTTCGTCAATTAATTGAGCAA 57.191 26.923 27.26 19.86 46.44 3.91
4877 4942 8.296000 TCTGATTTTTCGTCAATTAATTGAGCA 58.704 29.630 27.26 15.77 46.44 4.26
4886 4951 9.757227 TGGTTTTTATCTGATTTTTCGTCAATT 57.243 25.926 0.00 0.00 0.00 2.32
4887 4952 9.757227 TTGGTTTTTATCTGATTTTTCGTCAAT 57.243 25.926 0.00 0.00 0.00 2.57
4888 4953 9.757227 ATTGGTTTTTATCTGATTTTTCGTCAA 57.243 25.926 0.00 0.00 0.00 3.18
4898 5157 9.308000 TCCAGTTTGTATTGGTTTTTATCTGAT 57.692 29.630 0.00 0.00 35.89 2.90
4926 5185 8.865090 CAGTAATAGTGAAGATTCCTGGACTAT 58.135 37.037 0.00 0.00 32.88 2.12
4927 5186 7.839705 ACAGTAATAGTGAAGATTCCTGGACTA 59.160 37.037 1.57 0.00 27.61 2.59
4928 5187 6.670027 ACAGTAATAGTGAAGATTCCTGGACT 59.330 38.462 1.57 0.00 27.61 3.85
4930 5189 6.440647 ACACAGTAATAGTGAAGATTCCTGGA 59.559 38.462 1.57 0.00 40.16 3.86
4931 5190 6.644347 ACACAGTAATAGTGAAGATTCCTGG 58.356 40.000 1.57 0.00 40.16 4.45
4932 5191 7.551585 AGACACAGTAATAGTGAAGATTCCTG 58.448 38.462 1.57 0.00 40.16 3.86
4933 5192 7.726033 AGACACAGTAATAGTGAAGATTCCT 57.274 36.000 1.57 0.00 40.16 3.36
4934 5193 9.685828 GATAGACACAGTAATAGTGAAGATTCC 57.314 37.037 1.57 0.00 40.16 3.01
4935 5194 9.388346 CGATAGACACAGTAATAGTGAAGATTC 57.612 37.037 1.57 0.00 40.16 2.52
4936 5195 8.904834 ACGATAGACACAGTAATAGTGAAGATT 58.095 33.333 1.57 0.00 38.98 2.40
4937 5196 8.453238 ACGATAGACACAGTAATAGTGAAGAT 57.547 34.615 1.57 0.00 38.98 2.40
4939 5198 7.043986 GCAACGATAGACACAGTAATAGTGAAG 60.044 40.741 1.57 0.00 38.98 3.02
4940 5199 6.750501 GCAACGATAGACACAGTAATAGTGAA 59.249 38.462 1.57 0.00 38.98 3.18
4941 5200 6.095021 AGCAACGATAGACACAGTAATAGTGA 59.905 38.462 1.57 0.00 38.98 3.41
4942 5201 6.197282 CAGCAACGATAGACACAGTAATAGTG 59.803 42.308 0.00 0.00 40.56 2.74
4971 5290 1.107114 TCGAGGATCAACAGAGGCTC 58.893 55.000 6.34 6.34 33.17 4.70
4972 5291 1.205893 GTTCGAGGATCAACAGAGGCT 59.794 52.381 0.00 0.00 33.17 4.58
4976 5295 1.066858 GGCTGTTCGAGGATCAACAGA 60.067 52.381 21.59 2.35 47.00 3.41
5030 5350 2.512705 TGCATGCATGTAGGTGTCAAA 58.487 42.857 26.79 0.00 0.00 2.69
5074 5394 6.073331 GCTTAGCTTAGCTGATGAGGTTATTG 60.073 42.308 17.97 0.00 40.10 1.90
5099 5419 5.490139 TTTGCATGCTTAGCTTAGCTTAG 57.510 39.130 23.89 14.34 41.76 2.18
5100 5420 5.895636 TTTTGCATGCTTAGCTTAGCTTA 57.104 34.783 23.89 1.51 41.76 3.09
5101 5421 4.789012 TTTTGCATGCTTAGCTTAGCTT 57.211 36.364 23.89 15.84 41.76 3.74
5147 5467 4.736896 GTCGACCACGGGAGGTGC 62.737 72.222 3.51 0.00 45.62 5.01
5155 5475 2.957489 TGCGTGTTGTCGACCACG 60.957 61.111 30.58 30.58 43.04 4.94
5194 5514 1.282875 GCAGCAAAGTTGTCGACCC 59.717 57.895 14.12 3.45 0.00 4.46
5217 5537 2.223947 GCCTTTTCTTTCTGCGGGAAAA 60.224 45.455 7.63 7.63 42.52 2.29
5236 5556 6.093495 TCCGTGCATATATTATTAGCAAAGCC 59.907 38.462 0.00 0.00 36.91 4.35
5237 5557 7.072177 TCCGTGCATATATTATTAGCAAAGC 57.928 36.000 0.00 0.00 36.91 3.51
5255 5575 5.673337 TCAGATTATTAGCATTTCCGTGC 57.327 39.130 0.00 0.00 45.38 5.34
5256 5576 7.041848 TGACATCAGATTATTAGCATTTCCGTG 60.042 37.037 0.00 0.00 0.00 4.94
5257 5577 6.992123 TGACATCAGATTATTAGCATTTCCGT 59.008 34.615 0.00 0.00 0.00 4.69
5258 5578 7.425577 TGACATCAGATTATTAGCATTTCCG 57.574 36.000 0.00 0.00 0.00 4.30
5275 5595 5.011586 TCATGCCTCAAAAATCTGACATCA 58.988 37.500 0.00 0.00 0.00 3.07
5276 5596 5.571784 TCATGCCTCAAAAATCTGACATC 57.428 39.130 0.00 0.00 0.00 3.06
5278 5598 5.787953 TTTCATGCCTCAAAAATCTGACA 57.212 34.783 0.00 0.00 0.00 3.58
5279 5599 7.662604 ATTTTTCATGCCTCAAAAATCTGAC 57.337 32.000 8.86 0.00 37.55 3.51
5280 5600 7.173562 CCAATTTTTCATGCCTCAAAAATCTGA 59.826 33.333 13.09 0.00 39.96 3.27
5281 5601 7.173562 TCCAATTTTTCATGCCTCAAAAATCTG 59.826 33.333 13.09 12.61 39.96 2.90
5282 5602 7.173735 GTCCAATTTTTCATGCCTCAAAAATCT 59.826 33.333 13.09 4.94 39.96 2.40
5283 5603 7.041235 TGTCCAATTTTTCATGCCTCAAAAATC 60.041 33.333 13.09 5.09 39.96 2.17
5284 5604 6.771749 TGTCCAATTTTTCATGCCTCAAAAAT 59.228 30.769 8.86 8.86 41.73 1.82
5285 5605 6.118170 TGTCCAATTTTTCATGCCTCAAAAA 58.882 32.000 5.53 5.53 36.25 1.94
5290 5610 6.806388 AAAATGTCCAATTTTTCATGCCTC 57.194 33.333 0.00 0.00 0.00 4.70
5306 5626 9.328845 ACAATATAAATGGGCATGAAAAATGTC 57.671 29.630 0.00 0.00 0.00 3.06
5309 5629 7.171337 GCGACAATATAAATGGGCATGAAAAAT 59.829 33.333 0.00 0.00 0.00 1.82
5319 5639 5.964958 ATCCTTGCGACAATATAAATGGG 57.035 39.130 0.00 0.00 0.00 4.00
5321 5641 7.132694 TGCTATCCTTGCGACAATATAAATG 57.867 36.000 0.00 0.00 0.00 2.32
5332 5652 3.609853 ACTGAATTTGCTATCCTTGCGA 58.390 40.909 0.00 0.00 0.00 5.10
5350 5670 1.361668 ATTGCCGTGCTCGCTAACTG 61.362 55.000 1.89 0.00 35.54 3.16
5355 5675 1.210155 GAAAATTGCCGTGCTCGCT 59.790 52.632 1.89 0.00 35.54 4.93
5361 5681 1.863267 TTTGCCAGAAAATTGCCGTG 58.137 45.000 0.00 0.00 0.00 4.94
5364 5684 4.379652 TCTCTTTTTGCCAGAAAATTGCC 58.620 39.130 0.00 0.00 0.00 4.52
5365 5685 5.989551 TTCTCTTTTTGCCAGAAAATTGC 57.010 34.783 0.00 0.00 0.00 3.56
5383 5703 5.633830 TGGCAAATTCTCAGTTCATTCTC 57.366 39.130 0.00 0.00 0.00 2.87
5385 5705 4.565564 GCATGGCAAATTCTCAGTTCATTC 59.434 41.667 0.00 0.00 0.00 2.67
5388 5708 3.159472 AGCATGGCAAATTCTCAGTTCA 58.841 40.909 0.00 0.00 0.00 3.18
5389 5709 3.730061 CGAGCATGGCAAATTCTCAGTTC 60.730 47.826 0.00 0.00 0.00 3.01
5390 5710 2.163010 CGAGCATGGCAAATTCTCAGTT 59.837 45.455 0.00 0.00 0.00 3.16
5391 5711 1.741706 CGAGCATGGCAAATTCTCAGT 59.258 47.619 0.00 0.00 0.00 3.41
5392 5712 1.741706 ACGAGCATGGCAAATTCTCAG 59.258 47.619 0.00 0.00 0.00 3.35
5393 5713 1.739466 GACGAGCATGGCAAATTCTCA 59.261 47.619 0.00 0.00 0.00 3.27
5412 5737 2.642311 TGAGGATGGCAAGTTTAGTGGA 59.358 45.455 0.00 0.00 0.00 4.02
5414 5739 3.820467 TGTTGAGGATGGCAAGTTTAGTG 59.180 43.478 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.