Multiple sequence alignment - TraesCS5A01G058000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G058000 chr5A 100.000 7337 0 0 1 7337 55661606 55654270 0.000000e+00 13549.0
1 TraesCS5A01G058000 chr5A 82.308 260 34 7 7081 7337 655047251 655047001 1.600000e-51 215.0
2 TraesCS5A01G058000 chr5D 94.552 3451 87 36 332 3714 67861153 67864570 0.000000e+00 5238.0
3 TraesCS5A01G058000 chr5D 96.689 3081 50 20 3739 6793 67864565 67867619 0.000000e+00 5077.0
4 TraesCS5A01G058000 chr5D 95.506 89 4 0 1 89 67860814 67860902 7.670000e-30 143.0
5 TraesCS5A01G058000 chr5B 94.780 2931 91 30 443 3354 73827477 73830364 0.000000e+00 4508.0
6 TraesCS5A01G058000 chr5B 94.948 2573 87 15 3342 5882 73830381 73832942 0.000000e+00 3991.0
7 TraesCS5A01G058000 chr5B 92.446 1059 41 17 5912 6959 73833218 73834248 0.000000e+00 1476.0
8 TraesCS5A01G058000 chr5B 85.306 245 31 3 7089 7330 538101688 538101930 1.580000e-61 248.0
9 TraesCS5A01G058000 chr5B 88.235 153 15 2 301 452 73827192 73827342 5.850000e-41 180.0
10 TraesCS5A01G058000 chr5B 93.671 79 5 0 3 81 73827111 73827189 1.290000e-22 119.0
11 TraesCS5A01G058000 chr5B 92.453 53 4 0 29 81 73827075 73827127 7.890000e-10 76.8
12 TraesCS5A01G058000 chr4D 94.492 236 12 1 80 315 213305491 213305257 5.410000e-96 363.0
13 TraesCS5A01G058000 chr4D 95.455 220 10 0 80 299 334111880 334112099 1.170000e-92 351.0
14 TraesCS5A01G058000 chr3A 95.475 221 10 0 81 301 81089400 81089180 3.260000e-93 353.0
15 TraesCS5A01G058000 chr2A 94.619 223 12 0 78 300 70953806 70954028 5.450000e-91 346.0
16 TraesCS5A01G058000 chr2A 82.072 251 32 2 7066 7303 77160514 77160764 1.250000e-47 202.0
17 TraesCS5A01G058000 chr2D 93.162 234 12 4 70 301 650216529 650216760 2.540000e-89 340.0
18 TraesCS5A01G058000 chr2D 82.731 249 37 4 7089 7333 272991742 272991496 4.460000e-52 217.0
19 TraesCS5A01G058000 chr2D 92.683 41 3 0 6862 6902 482359695 482359655 7.950000e-05 60.2
20 TraesCS5A01G058000 chr1A 94.170 223 13 0 79 301 80681909 80682131 2.540000e-89 340.0
21 TraesCS5A01G058000 chr7D 93.778 225 14 0 81 305 227049056 227048832 9.120000e-89 339.0
22 TraesCS5A01G058000 chr7D 95.652 46 2 0 6857 6902 6663474 6663429 2.840000e-09 75.0
23 TraesCS5A01G058000 chr6D 93.778 225 14 0 75 299 35626876 35627100 9.120000e-89 339.0
24 TraesCS5A01G058000 chr6D 83.004 253 33 5 7089 7332 357582595 357582846 3.450000e-53 220.0
25 TraesCS5A01G058000 chr4A 92.308 234 17 1 67 300 596540213 596540445 1.530000e-86 331.0
26 TraesCS5A01G058000 chr4A 84.836 244 32 3 7089 7327 744378075 744377832 2.650000e-59 241.0
27 TraesCS5A01G058000 chr7A 82.937 252 34 5 7089 7331 627240462 627240713 1.240000e-52 219.0
28 TraesCS5A01G058000 chr7A 82.540 252 39 3 7066 7314 66296479 66296230 4.460000e-52 217.0
29 TraesCS5A01G058000 chrUn 83.475 236 36 2 7066 7298 228770395 228770630 4.460000e-52 217.0
30 TraesCS5A01G058000 chrUn 83.475 236 36 2 7066 7298 306124408 306124643 4.460000e-52 217.0
31 TraesCS5A01G058000 chr3B 95.556 45 2 0 6858 6902 50956191 50956235 1.020000e-08 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G058000 chr5A 55654270 55661606 7336 True 13549.000000 13549 100.000000 1 7337 1 chr5A.!!$R1 7336
1 TraesCS5A01G058000 chr5D 67860814 67867619 6805 False 3486.000000 5238 95.582333 1 6793 3 chr5D.!!$F1 6792
2 TraesCS5A01G058000 chr5B 73827075 73834248 7173 False 1725.133333 4508 92.755500 3 6959 6 chr5B.!!$F2 6956

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
272 319 0.030369 GACCTAGGGATACGTGCACG 59.970 60.000 35.99 35.99 46.33 5.34 F
282 329 0.037139 TACGTGCACGCCCTGTAAAT 60.037 50.000 37.35 17.99 44.43 1.40 F
284 331 0.454285 CGTGCACGCCCTGTAAATTG 60.454 55.000 28.16 0.00 0.00 2.32 F
1565 1792 0.725784 CATTGTTCTTGCGTGCGTCC 60.726 55.000 0.00 0.00 0.00 4.79 F
1915 2143 1.381928 TTTGTTTTGCACGCGGGGTA 61.382 50.000 11.92 0.00 0.00 3.69 F
2884 3129 1.813178 GCTGCAGTTTCTTTACCCCTC 59.187 52.381 16.64 0.00 0.00 4.30 F
3445 3725 1.871039 ACACGCCAATGAACTGTACAC 59.129 47.619 0.00 0.00 0.00 2.90 F
4732 5029 1.674962 CATGCTAGCAAAGAGAAGCCC 59.325 52.381 23.54 0.00 33.99 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1521 1748 0.331278 TGCAAGAACCATGTAGGGGG 59.669 55.000 0.00 0.00 43.89 5.40 R
1565 1792 0.504384 CGAGCATAACGCCAGAATCG 59.496 55.000 0.00 0.00 44.04 3.34 R
1909 2137 0.525761 CCAACATTGCAAGTACCCCG 59.474 55.000 4.94 0.00 0.00 5.73 R
2600 2842 0.780002 GCAAAGCAACAAGATGTGCG 59.220 50.000 0.00 0.00 32.41 5.34 R
3429 3709 1.200020 GCAGGTGTACAGTTCATTGGC 59.800 52.381 0.00 0.00 0.00 4.52 R
4732 5029 2.223525 GGTCTTCCGTAGATTCTCCACG 60.224 54.545 2.63 2.63 34.79 4.94 R
5364 5669 2.109834 ACTGATCACCAATTTCCACCCA 59.890 45.455 0.00 0.00 0.00 4.51 R
6697 7268 0.237498 GGAACGAAACTTTCAGCCCG 59.763 55.000 2.49 0.00 0.00 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 99 2.387185 TCTAACGTGCGTATATTGCGG 58.613 47.619 0.00 0.00 34.24 5.69
103 138 5.280654 ACTACCTCCGTTTCAGTTTACAA 57.719 39.130 0.00 0.00 0.00 2.41
105 140 4.146745 ACCTCCGTTTCAGTTTACAAGT 57.853 40.909 0.00 0.00 0.00 3.16
110 145 5.291971 TCCGTTTCAGTTTACAAGTCCTAC 58.708 41.667 0.00 0.00 0.00 3.18
111 146 5.051816 CCGTTTCAGTTTACAAGTCCTACA 58.948 41.667 0.00 0.00 0.00 2.74
112 147 5.050567 CCGTTTCAGTTTACAAGTCCTACAC 60.051 44.000 0.00 0.00 0.00 2.90
113 148 5.332055 CGTTTCAGTTTACAAGTCCTACACG 60.332 44.000 0.00 0.00 0.00 4.49
114 149 4.924305 TCAGTTTACAAGTCCTACACGT 57.076 40.909 0.00 0.00 0.00 4.49
115 150 6.389830 TTCAGTTTACAAGTCCTACACGTA 57.610 37.500 0.00 0.00 0.00 3.57
117 152 7.686438 TCAGTTTACAAGTCCTACACGTATA 57.314 36.000 0.00 0.00 0.00 1.47
119 154 8.400947 TCAGTTTACAAGTCCTACACGTATATC 58.599 37.037 0.00 0.00 0.00 1.63
121 156 9.618890 AGTTTACAAGTCCTACACGTATATCTA 57.381 33.333 0.00 0.00 0.00 1.98
122 157 9.875675 GTTTACAAGTCCTACACGTATATCTAG 57.124 37.037 0.00 0.00 0.00 2.43
123 158 8.613060 TTACAAGTCCTACACGTATATCTAGG 57.387 38.462 0.00 0.00 0.00 3.02
124 159 6.599445 ACAAGTCCTACACGTATATCTAGGT 58.401 40.000 0.00 0.00 0.00 3.08
125 160 7.059156 ACAAGTCCTACACGTATATCTAGGTT 58.941 38.462 0.00 0.00 0.00 3.50
126 161 7.013083 ACAAGTCCTACACGTATATCTAGGTTG 59.987 40.741 0.00 0.00 0.00 3.77
127 162 6.599445 AGTCCTACACGTATATCTAGGTTGT 58.401 40.000 0.00 0.00 0.00 3.32
128 163 6.709846 AGTCCTACACGTATATCTAGGTTGTC 59.290 42.308 0.00 0.00 0.00 3.18
129 164 6.484643 GTCCTACACGTATATCTAGGTTGTCA 59.515 42.308 0.00 0.00 0.00 3.58
130 165 7.012704 GTCCTACACGTATATCTAGGTTGTCAA 59.987 40.741 0.00 0.00 0.00 3.18
193 240 7.668525 ATACCTTTTGAAAGTAGAAACTCGG 57.331 36.000 3.09 0.00 33.75 4.63
197 244 6.260271 CCTTTTGAAAGTAGAAACTCGGAAGT 59.740 38.462 3.09 0.00 33.75 3.01
198 245 7.201705 CCTTTTGAAAGTAGAAACTCGGAAGTT 60.202 37.037 3.09 0.00 39.62 2.66
245 292 6.971726 ATATGACTTGTATTAGGTCGGTCA 57.028 37.500 0.00 0.00 38.17 4.02
249 296 6.469410 TGACTTGTATTAGGTCGGTCAAATT 58.531 36.000 0.00 0.00 38.17 1.82
250 297 6.370442 TGACTTGTATTAGGTCGGTCAAATTG 59.630 38.462 0.00 0.00 38.17 2.32
251 298 6.469410 ACTTGTATTAGGTCGGTCAAATTGA 58.531 36.000 0.00 0.00 0.00 2.57
254 301 6.645306 TGTATTAGGTCGGTCAAATTGATGA 58.355 36.000 0.00 0.00 0.00 2.92
266 313 5.696724 GTCAAATTGATGACCTAGGGATACG 59.303 44.000 14.81 0.00 43.11 3.06
268 315 4.873746 ATTGATGACCTAGGGATACGTG 57.126 45.455 14.81 0.00 35.44 4.49
269 316 1.961394 TGATGACCTAGGGATACGTGC 59.039 52.381 14.81 0.00 35.44 5.34
271 318 1.108776 TGACCTAGGGATACGTGCAC 58.891 55.000 14.81 6.82 35.44 4.57
272 319 0.030369 GACCTAGGGATACGTGCACG 59.970 60.000 35.99 35.99 46.33 5.34
273 320 1.299926 CCTAGGGATACGTGCACGC 60.300 63.158 37.35 21.80 44.43 5.34
274 321 1.299926 CTAGGGATACGTGCACGCC 60.300 63.158 37.35 28.84 44.43 5.68
276 323 4.157120 GGGATACGTGCACGCCCT 62.157 66.667 37.35 22.53 44.43 5.19
277 324 2.890474 GGATACGTGCACGCCCTG 60.890 66.667 37.35 13.22 44.43 4.45
278 325 2.125673 GATACGTGCACGCCCTGT 60.126 61.111 37.35 20.98 44.43 4.00
279 326 1.140161 GATACGTGCACGCCCTGTA 59.860 57.895 37.35 22.47 44.43 2.74
280 327 0.458889 GATACGTGCACGCCCTGTAA 60.459 55.000 37.35 15.21 44.43 2.41
282 329 0.037139 TACGTGCACGCCCTGTAAAT 60.037 50.000 37.35 17.99 44.43 1.40
283 330 0.887387 ACGTGCACGCCCTGTAAATT 60.887 50.000 37.35 12.57 44.43 1.82
284 331 0.454285 CGTGCACGCCCTGTAAATTG 60.454 55.000 28.16 0.00 0.00 2.32
285 332 0.878416 GTGCACGCCCTGTAAATTGA 59.122 50.000 0.00 0.00 0.00 2.57
289 347 2.227865 GCACGCCCTGTAAATTGAGAAA 59.772 45.455 0.00 0.00 0.00 2.52
294 352 4.336280 GCCCTGTAAATTGAGAAAGAGGT 58.664 43.478 0.00 0.00 0.00 3.85
386 445 2.095213 GCAAAGCGGTTATCGATGACAA 59.905 45.455 20.44 0.00 42.43 3.18
416 475 7.433425 GCAACAACTATCTGCCATCTATTTTTC 59.567 37.037 0.00 0.00 0.00 2.29
425 484 6.436847 TCTGCCATCTATTTTTCCATGACAAA 59.563 34.615 0.00 0.00 0.00 2.83
437 496 2.393764 CATGACAAAAGTGGAAACGGC 58.606 47.619 0.00 0.00 0.00 5.68
439 498 1.819288 TGACAAAAGTGGAAACGGCAA 59.181 42.857 0.00 0.00 0.00 4.52
467 670 6.456501 GCCTATTATTGTCCGTTACATCTCT 58.543 40.000 0.00 0.00 38.10 3.10
469 672 7.658261 CCTATTATTGTCCGTTACATCTCTGA 58.342 38.462 0.00 0.00 38.10 3.27
520 723 4.640789 TTTGCTTTTATCAACACGGTGT 57.359 36.364 8.21 8.21 0.00 4.16
537 740 2.423373 GGTGTTGGATCCAGCCATACAT 60.423 50.000 24.13 0.00 37.86 2.29
538 741 3.181445 GGTGTTGGATCCAGCCATACATA 60.181 47.826 24.13 2.37 37.86 2.29
539 742 4.460263 GTGTTGGATCCAGCCATACATAA 58.540 43.478 24.13 1.62 37.86 1.90
540 743 4.275936 GTGTTGGATCCAGCCATACATAAC 59.724 45.833 24.13 11.84 37.86 1.89
541 744 4.080072 TGTTGGATCCAGCCATACATAACA 60.080 41.667 24.13 14.21 37.86 2.41
866 1090 6.900186 TCTCTCTCATATTCAACTCCCTTCTT 59.100 38.462 0.00 0.00 0.00 2.52
1521 1748 1.447317 CGGGGATGCTGTATTGCCAC 61.447 60.000 0.00 0.00 0.00 5.01
1562 1789 1.044725 GTTCATTGTTCTTGCGTGCG 58.955 50.000 0.00 0.00 0.00 5.34
1565 1792 0.725784 CATTGTTCTTGCGTGCGTCC 60.726 55.000 0.00 0.00 0.00 4.79
1566 1793 2.170260 ATTGTTCTTGCGTGCGTCCG 62.170 55.000 0.00 0.00 0.00 4.79
1567 1794 3.033764 GTTCTTGCGTGCGTCCGA 61.034 61.111 0.00 0.00 0.00 4.55
1662 1889 3.185594 TCGTTTCGTAACTTCCATGCTTG 59.814 43.478 3.36 0.00 31.89 4.01
1691 1918 2.359354 TGCGGTTCAACGGATGGG 60.359 61.111 0.00 0.00 0.00 4.00
1754 1981 5.028375 GCTTTGGTGCGTATAATCTTGTTC 58.972 41.667 0.00 0.00 0.00 3.18
1788 2015 4.073293 AGTTCCCCATTGCTACTATTCG 57.927 45.455 0.00 0.00 0.00 3.34
1895 2123 6.985117 TGGAATGATGATTTTAGCCTATTGC 58.015 36.000 0.00 0.00 41.71 3.56
1909 2137 2.155539 CCTATTGCTTTGTTTTGCACGC 59.844 45.455 0.00 0.00 39.05 5.34
1915 2143 1.381928 TTTGTTTTGCACGCGGGGTA 61.382 50.000 11.92 0.00 0.00 3.69
1957 2185 2.226330 TGGTGGAACAGTACACATTGC 58.774 47.619 9.74 0.00 41.80 3.56
2143 2371 7.656137 TCACTTTGTTTAGATGTTAGGAGTGAC 59.344 37.037 0.00 0.00 36.02 3.67
2298 2526 4.630644 TCATTTGAGCTCTGTCTCCTTT 57.369 40.909 16.19 0.00 32.22 3.11
2470 2710 2.423538 AGGTGGTTTTGATCTATTGCGC 59.576 45.455 0.00 0.00 0.00 6.09
2490 2732 4.442472 GCGCACCTCCTCCTAGTTTATTTA 60.442 45.833 0.30 0.00 0.00 1.40
2491 2733 5.742255 GCGCACCTCCTCCTAGTTTATTTAT 60.742 44.000 0.30 0.00 0.00 1.40
2494 2736 7.929785 CGCACCTCCTCCTAGTTTATTTATTTA 59.070 37.037 0.00 0.00 0.00 1.40
2531 2773 2.811410 AGATTGGCATGTGTGGATGTT 58.189 42.857 0.00 0.00 0.00 2.71
2556 2798 9.699703 TTAAGTAAATAACAGTTCCAAATTGGC 57.300 29.630 7.24 0.00 37.47 4.52
2634 2876 5.880054 TGCTTTGCTTAAATCTGTAGGAC 57.120 39.130 0.00 0.00 0.00 3.85
2657 2899 7.012989 GGACACAGGAGTTTACTACAATGTTTT 59.987 37.037 0.00 0.00 30.26 2.43
2658 2900 7.927048 ACACAGGAGTTTACTACAATGTTTTC 58.073 34.615 0.00 0.00 0.00 2.29
2659 2901 7.012989 ACACAGGAGTTTACTACAATGTTTTCC 59.987 37.037 0.00 0.00 0.00 3.13
2660 2902 7.228706 CACAGGAGTTTACTACAATGTTTTCCT 59.771 37.037 0.00 0.00 0.00 3.36
2661 2903 8.434392 ACAGGAGTTTACTACAATGTTTTCCTA 58.566 33.333 0.00 0.00 30.60 2.94
2662 2904 9.449719 CAGGAGTTTACTACAATGTTTTCCTAT 57.550 33.333 0.00 0.00 30.60 2.57
2663 2905 9.668497 AGGAGTTTACTACAATGTTTTCCTATC 57.332 33.333 0.00 0.00 30.00 2.08
2665 2907 9.444600 GAGTTTACTACAATGTTTTCCTATCCA 57.555 33.333 0.00 0.00 0.00 3.41
2847 3092 6.959361 TCAGAGCATTCTTTGTGTTTTCTAC 58.041 36.000 0.00 0.00 0.00 2.59
2884 3129 1.813178 GCTGCAGTTTCTTTACCCCTC 59.187 52.381 16.64 0.00 0.00 4.30
2938 3183 6.312426 CACACATCTTGAGTCCTCACTATTTC 59.688 42.308 0.00 0.00 39.66 2.17
3044 3289 3.342719 TGTAAAATTGATCTCGGCTGCA 58.657 40.909 0.50 0.00 0.00 4.41
3164 3410 8.722342 TGCTTTATCAAATGTTCTTTTACGTC 57.278 30.769 0.00 0.00 0.00 4.34
3358 3634 8.179509 AGGTAGTCAATAGCAGTATAAACGAT 57.820 34.615 0.00 0.00 34.15 3.73
3379 3655 6.657541 ACGATTTACCCAGCTTTCTGAATAAA 59.342 34.615 0.00 0.00 42.95 1.40
3380 3656 7.148239 ACGATTTACCCAGCTTTCTGAATAAAG 60.148 37.037 0.00 0.00 42.95 1.85
3445 3725 1.871039 ACACGCCAATGAACTGTACAC 59.129 47.619 0.00 0.00 0.00 2.90
3591 3871 3.526931 ATGTATCCACTGTTGACCTCG 57.473 47.619 0.00 0.00 0.00 4.63
3618 3898 5.419788 TGTTCTTCATATCTGGCAGCATTTT 59.580 36.000 10.34 0.00 0.00 1.82
3693 3973 6.939730 TGCTGTCATTATACCTCTGTTTCAAA 59.060 34.615 0.00 0.00 0.00 2.69
3718 3998 7.884816 ATCTTTTCTCAAGCATTTGTTCATG 57.115 32.000 0.00 0.00 35.73 3.07
3935 4220 9.588096 ACTTTAAATTGAGTATCTGTTTCCCTT 57.412 29.630 0.00 0.00 34.92 3.95
4029 4314 8.026607 TGCTATTTTACATTCTAAACTTGTGCC 58.973 33.333 0.00 0.00 0.00 5.01
4419 4708 3.070159 GGCTGTAGCATCCTGACTGAATA 59.930 47.826 6.18 0.00 44.36 1.75
4732 5029 1.674962 CATGCTAGCAAAGAGAAGCCC 59.325 52.381 23.54 0.00 33.99 5.19
4990 5287 2.122954 GTGTCTCCCACCTCCCCT 59.877 66.667 0.00 0.00 38.18 4.79
5241 5546 6.775594 ACCAAGGAAAGAATGCTAATAACC 57.224 37.500 0.00 0.00 0.00 2.85
5363 5668 7.824289 TCAGTTTCAAAGTATGTATCCTTCCAG 59.176 37.037 0.00 0.00 0.00 3.86
5364 5669 7.607991 CAGTTTCAAAGTATGTATCCTTCCAGT 59.392 37.037 0.00 0.00 0.00 4.00
5365 5670 7.607991 AGTTTCAAAGTATGTATCCTTCCAGTG 59.392 37.037 0.00 0.00 0.00 3.66
5366 5671 5.989477 TCAAAGTATGTATCCTTCCAGTGG 58.011 41.667 1.40 1.40 0.00 4.00
5486 5796 6.623767 GCACATCTTGTTCCTTTATGGTCTTC 60.624 42.308 0.00 0.00 37.07 2.87
5949 6505 3.745975 CGAGTTGTCCAAAACTATGAGCA 59.254 43.478 0.00 0.00 40.48 4.26
5992 6548 6.688385 CACATTATTGTAAAGTGGAATCAGCG 59.312 38.462 0.00 0.00 33.76 5.18
6189 6748 0.888285 AGGTTGAACTGAGCTGCTGC 60.888 55.000 7.01 7.62 40.05 5.25
6327 6886 1.375523 GATAACCTATGGGCGGCCG 60.376 63.158 24.05 24.05 35.63 6.13
6376 6935 1.744639 GATCTCCTGATGCGCCAGA 59.255 57.895 14.35 2.51 36.29 3.86
6404 6963 4.751431 CTTGCCCTGGGAAGGAAG 57.249 61.111 19.27 8.29 39.42 3.46
6462 7027 7.492669 CCAGTCGACATATACTGAAAAGAATGT 59.507 37.037 19.50 0.00 44.79 2.71
6538 7103 6.801718 TGGATTCTCTTAGGGTTTATTCGA 57.198 37.500 0.00 0.00 0.00 3.71
6584 7155 6.756221 ACCCTTGTTATATACGGATGAAGTC 58.244 40.000 0.00 0.00 0.00 3.01
6601 7172 6.431198 TGAAGTCTGTTGTTGTTCTAAACC 57.569 37.500 0.00 0.00 0.00 3.27
6660 7231 4.693566 TGATGGTATGTTTCAACCTTCGTC 59.306 41.667 0.00 0.00 40.87 4.20
6697 7268 3.123620 CAGTGCTCGGCTGCTTCC 61.124 66.667 0.00 0.00 0.00 3.46
6715 7287 0.237498 CCGGGCTGAAAGTTTCGTTC 59.763 55.000 10.92 2.65 35.30 3.95
6718 7290 1.679153 GGGCTGAAAGTTTCGTTCCAA 59.321 47.619 10.92 0.00 35.30 3.53
6719 7291 2.100087 GGGCTGAAAGTTTCGTTCCAAA 59.900 45.455 10.92 0.00 35.30 3.28
6776 7348 1.144969 GTTTGATTCGTGCCTCGTCA 58.855 50.000 0.00 0.00 40.80 4.35
6779 7351 0.109272 TGATTCGTGCCTCGTCACTC 60.109 55.000 0.00 0.00 40.80 3.51
6842 7414 9.664332 ATTTATATCTCGATTGGGAATCAGAAG 57.336 33.333 0.00 0.00 37.78 2.85
6858 7430 6.661304 ATCAGAAGCCAAAGAAATTTGAGT 57.339 33.333 0.00 0.00 33.95 3.41
6859 7431 5.835257 TCAGAAGCCAAAGAAATTTGAGTG 58.165 37.500 0.00 0.00 33.95 3.51
6860 7432 4.446719 CAGAAGCCAAAGAAATTTGAGTGC 59.553 41.667 0.00 0.00 33.95 4.40
6863 7435 3.385755 AGCCAAAGAAATTTGAGTGCTGT 59.614 39.130 0.00 0.00 33.95 4.40
6865 7437 4.209911 GCCAAAGAAATTTGAGTGCTGTTC 59.790 41.667 0.00 0.00 33.95 3.18
6867 7439 5.461078 CCAAAGAAATTTGAGTGCTGTTCTG 59.539 40.000 0.00 0.00 33.95 3.02
6869 7441 3.887716 AGAAATTTGAGTGCTGTTCTGCT 59.112 39.130 0.00 0.00 0.00 4.24
6870 7442 3.911661 AATTTGAGTGCTGTTCTGCTC 57.088 42.857 3.65 0.45 0.00 4.26
6871 7443 1.597742 TTTGAGTGCTGTTCTGCTCC 58.402 50.000 3.65 0.00 0.00 4.70
6872 7444 0.761187 TTGAGTGCTGTTCTGCTCCT 59.239 50.000 3.65 0.23 0.00 3.69
6873 7445 0.034476 TGAGTGCTGTTCTGCTCCTG 59.966 55.000 3.65 0.00 0.00 3.86
6874 7446 0.673022 GAGTGCTGTTCTGCTCCTGG 60.673 60.000 3.65 0.00 0.00 4.45
6875 7447 1.673665 GTGCTGTTCTGCTCCTGGG 60.674 63.158 0.00 0.00 0.00 4.45
6876 7448 2.149383 TGCTGTTCTGCTCCTGGGT 61.149 57.895 0.00 0.00 0.00 4.51
6877 7449 1.673665 GCTGTTCTGCTCCTGGGTG 60.674 63.158 0.00 0.00 0.00 4.61
6878 7450 1.673665 CTGTTCTGCTCCTGGGTGC 60.674 63.158 6.72 6.72 35.46 5.01
6879 7451 2.401699 CTGTTCTGCTCCTGGGTGCA 62.402 60.000 14.37 14.37 41.45 4.57
6880 7452 1.001641 GTTCTGCTCCTGGGTGCAT 60.002 57.895 15.28 0.00 42.51 3.96
6881 7453 0.253044 GTTCTGCTCCTGGGTGCATA 59.747 55.000 15.28 7.15 42.51 3.14
6974 7546 8.342634 AGATAAACATTAATTTTCACGATCCGG 58.657 33.333 0.00 0.00 0.00 5.14
6975 7547 4.287238 ACATTAATTTTCACGATCCGGC 57.713 40.909 0.00 0.00 0.00 6.13
6976 7548 3.242608 ACATTAATTTTCACGATCCGGCG 60.243 43.478 0.00 0.00 37.29 6.46
6977 7549 0.653636 TAATTTTCACGATCCGGCGC 59.346 50.000 0.00 0.00 33.86 6.53
6978 7550 1.302383 AATTTTCACGATCCGGCGCA 61.302 50.000 10.83 0.00 33.86 6.09
6979 7551 1.977594 ATTTTCACGATCCGGCGCAC 61.978 55.000 10.83 0.00 33.86 5.34
6989 7561 3.645975 CGGCGCACGGTGAAGTTT 61.646 61.111 13.29 0.00 39.42 2.66
6990 7562 2.251371 GGCGCACGGTGAAGTTTC 59.749 61.111 13.29 0.00 0.00 2.78
6991 7563 2.251642 GGCGCACGGTGAAGTTTCT 61.252 57.895 13.29 0.00 0.00 2.52
6992 7564 0.947180 GGCGCACGGTGAAGTTTCTA 60.947 55.000 13.29 0.00 0.00 2.10
6993 7565 0.438830 GCGCACGGTGAAGTTTCTAG 59.561 55.000 13.29 0.00 0.00 2.43
6994 7566 1.933500 GCGCACGGTGAAGTTTCTAGA 60.934 52.381 13.29 0.00 0.00 2.43
6995 7567 2.607187 CGCACGGTGAAGTTTCTAGAT 58.393 47.619 13.29 0.00 0.00 1.98
6996 7568 2.345641 CGCACGGTGAAGTTTCTAGATG 59.654 50.000 13.29 0.00 0.00 2.90
6997 7569 2.673368 GCACGGTGAAGTTTCTAGATGG 59.327 50.000 13.29 0.00 0.00 3.51
6998 7570 3.864921 GCACGGTGAAGTTTCTAGATGGT 60.865 47.826 13.29 0.00 0.00 3.55
6999 7571 3.679980 CACGGTGAAGTTTCTAGATGGTG 59.320 47.826 0.74 0.00 0.00 4.17
7000 7572 3.323979 ACGGTGAAGTTTCTAGATGGTGT 59.676 43.478 0.00 0.00 0.00 4.16
7001 7573 4.202326 ACGGTGAAGTTTCTAGATGGTGTT 60.202 41.667 0.00 0.00 0.00 3.32
7002 7574 5.011329 ACGGTGAAGTTTCTAGATGGTGTTA 59.989 40.000 0.00 0.00 0.00 2.41
7003 7575 5.929992 CGGTGAAGTTTCTAGATGGTGTTAA 59.070 40.000 0.00 0.00 0.00 2.01
7004 7576 6.594159 CGGTGAAGTTTCTAGATGGTGTTAAT 59.406 38.462 0.00 0.00 0.00 1.40
7005 7577 7.119262 CGGTGAAGTTTCTAGATGGTGTTAATT 59.881 37.037 0.00 0.00 0.00 1.40
7006 7578 8.793592 GGTGAAGTTTCTAGATGGTGTTAATTT 58.206 33.333 0.00 0.00 0.00 1.82
7011 7583 9.349713 AGTTTCTAGATGGTGTTAATTTTCACA 57.650 29.630 12.44 0.00 36.43 3.58
7041 7613 8.547967 TTTTCACAGTAGTTTATAAGCTCTGG 57.452 34.615 21.22 14.78 0.00 3.86
7042 7614 7.476540 TTCACAGTAGTTTATAAGCTCTGGA 57.523 36.000 21.22 15.96 0.00 3.86
7043 7615 6.864342 TCACAGTAGTTTATAAGCTCTGGAC 58.136 40.000 21.22 10.67 0.00 4.02
7044 7616 5.744345 CACAGTAGTTTATAAGCTCTGGACG 59.256 44.000 21.22 12.29 0.00 4.79
7045 7617 5.163540 ACAGTAGTTTATAAGCTCTGGACGG 60.164 44.000 21.22 12.49 0.00 4.79
7046 7618 4.954826 AGTAGTTTATAAGCTCTGGACGGT 59.045 41.667 4.97 0.00 0.00 4.83
7047 7619 4.124851 AGTTTATAAGCTCTGGACGGTG 57.875 45.455 0.00 0.00 0.00 4.94
7048 7620 3.767673 AGTTTATAAGCTCTGGACGGTGA 59.232 43.478 0.00 0.00 0.00 4.02
7049 7621 4.222145 AGTTTATAAGCTCTGGACGGTGAA 59.778 41.667 0.00 0.00 0.00 3.18
7050 7622 2.969628 ATAAGCTCTGGACGGTGAAG 57.030 50.000 0.00 0.00 0.00 3.02
7051 7623 1.629043 TAAGCTCTGGACGGTGAAGT 58.371 50.000 0.00 0.00 0.00 3.01
7052 7624 0.759346 AAGCTCTGGACGGTGAAGTT 59.241 50.000 0.00 0.00 0.00 2.66
7053 7625 0.759346 AGCTCTGGACGGTGAAGTTT 59.241 50.000 0.00 0.00 0.00 2.66
7054 7626 1.149148 GCTCTGGACGGTGAAGTTTC 58.851 55.000 0.00 0.00 0.00 2.78
7055 7627 1.270358 GCTCTGGACGGTGAAGTTTCT 60.270 52.381 0.00 0.00 0.00 2.52
7056 7628 2.408050 CTCTGGACGGTGAAGTTTCTG 58.592 52.381 0.00 0.00 0.00 3.02
7057 7629 2.035961 CTCTGGACGGTGAAGTTTCTGA 59.964 50.000 0.00 0.00 0.00 3.27
7058 7630 2.632996 TCTGGACGGTGAAGTTTCTGAT 59.367 45.455 0.00 0.00 0.00 2.90
7059 7631 3.071023 TCTGGACGGTGAAGTTTCTGATT 59.929 43.478 0.00 0.00 0.00 2.57
7060 7632 3.138304 TGGACGGTGAAGTTTCTGATTG 58.862 45.455 0.00 0.00 0.00 2.67
7061 7633 2.484264 GGACGGTGAAGTTTCTGATTGG 59.516 50.000 0.00 0.00 0.00 3.16
7062 7634 2.484264 GACGGTGAAGTTTCTGATTGGG 59.516 50.000 0.00 0.00 0.00 4.12
7063 7635 1.200020 CGGTGAAGTTTCTGATTGGGC 59.800 52.381 0.00 0.00 0.00 5.36
7064 7636 1.200020 GGTGAAGTTTCTGATTGGGCG 59.800 52.381 0.00 0.00 0.00 6.13
7065 7637 0.881118 TGAAGTTTCTGATTGGGCGC 59.119 50.000 0.00 0.00 0.00 6.53
7066 7638 0.171231 GAAGTTTCTGATTGGGCGCC 59.829 55.000 21.18 21.18 0.00 6.53
7067 7639 1.250840 AAGTTTCTGATTGGGCGCCC 61.251 55.000 39.40 39.40 0.00 6.13
7068 7640 1.678970 GTTTCTGATTGGGCGCCCT 60.679 57.895 43.34 27.63 36.94 5.19
7069 7641 1.378514 TTTCTGATTGGGCGCCCTC 60.379 57.895 43.34 33.46 36.94 4.30
7070 7642 3.680620 TTCTGATTGGGCGCCCTCG 62.681 63.158 43.34 27.28 36.94 4.63
7071 7643 4.161295 CTGATTGGGCGCCCTCGA 62.161 66.667 43.34 29.58 38.10 4.04
7072 7644 3.680620 CTGATTGGGCGCCCTCGAA 62.681 63.158 43.34 30.83 38.10 3.71
7073 7645 3.202706 GATTGGGCGCCCTCGAAC 61.203 66.667 43.34 25.75 38.10 3.95
7074 7646 3.682292 GATTGGGCGCCCTCGAACT 62.682 63.158 43.34 20.04 38.10 3.01
7075 7647 2.306255 GATTGGGCGCCCTCGAACTA 62.306 60.000 43.34 21.57 38.10 2.24
7076 7648 1.696097 ATTGGGCGCCCTCGAACTAT 61.696 55.000 43.34 21.91 38.10 2.12
7077 7649 1.044231 TTGGGCGCCCTCGAACTATA 61.044 55.000 43.34 19.93 38.10 1.31
7078 7650 1.289380 GGGCGCCCTCGAACTATAG 59.711 63.158 38.76 0.00 38.10 1.31
7079 7651 1.177256 GGGCGCCCTCGAACTATAGA 61.177 60.000 38.76 0.00 38.10 1.98
7080 7652 0.889306 GGCGCCCTCGAACTATAGAT 59.111 55.000 18.11 0.00 38.10 1.98
7081 7653 1.402984 GGCGCCCTCGAACTATAGATG 60.403 57.143 18.11 0.00 38.10 2.90
7082 7654 1.540267 GCGCCCTCGAACTATAGATGA 59.460 52.381 6.78 0.23 38.10 2.92
7083 7655 2.030185 GCGCCCTCGAACTATAGATGAA 60.030 50.000 6.78 0.00 38.10 2.57
7084 7656 3.566523 CGCCCTCGAACTATAGATGAAC 58.433 50.000 6.78 0.00 38.10 3.18
7085 7657 3.566523 GCCCTCGAACTATAGATGAACG 58.433 50.000 6.78 4.88 0.00 3.95
7086 7658 3.252701 GCCCTCGAACTATAGATGAACGA 59.747 47.826 6.78 8.57 0.00 3.85
7087 7659 4.082679 GCCCTCGAACTATAGATGAACGAT 60.083 45.833 6.78 0.00 0.00 3.73
7088 7660 5.632959 CCCTCGAACTATAGATGAACGATC 58.367 45.833 6.78 0.00 0.00 3.69
7089 7661 5.392165 CCCTCGAACTATAGATGAACGATCC 60.392 48.000 6.78 0.00 0.00 3.36
7090 7662 5.392165 CCTCGAACTATAGATGAACGATCCC 60.392 48.000 6.78 0.00 0.00 3.85
7091 7663 5.067954 TCGAACTATAGATGAACGATCCCA 58.932 41.667 6.78 0.00 0.00 4.37
7092 7664 5.048921 TCGAACTATAGATGAACGATCCCAC 60.049 44.000 6.78 0.00 0.00 4.61
7093 7665 4.768130 ACTATAGATGAACGATCCCACG 57.232 45.455 6.78 0.00 39.31 4.94
7094 7666 4.395625 ACTATAGATGAACGATCCCACGA 58.604 43.478 6.78 0.00 37.03 4.35
7095 7667 4.825634 ACTATAGATGAACGATCCCACGAA 59.174 41.667 6.78 0.00 37.03 3.85
7096 7668 4.873746 ATAGATGAACGATCCCACGAAT 57.126 40.909 0.00 0.00 37.03 3.34
7097 7669 5.977489 ATAGATGAACGATCCCACGAATA 57.023 39.130 0.00 0.00 37.03 1.75
7098 7670 4.244425 AGATGAACGATCCCACGAATAG 57.756 45.455 0.00 0.00 37.03 1.73
7099 7671 3.637229 AGATGAACGATCCCACGAATAGT 59.363 43.478 0.00 0.00 37.03 2.12
7100 7672 3.431922 TGAACGATCCCACGAATAGTC 57.568 47.619 0.00 0.00 37.03 2.59
7101 7673 2.100252 TGAACGATCCCACGAATAGTCC 59.900 50.000 0.00 0.00 37.03 3.85
7102 7674 1.038280 ACGATCCCACGAATAGTCCC 58.962 55.000 0.00 0.00 37.03 4.46
7103 7675 1.329256 CGATCCCACGAATAGTCCCT 58.671 55.000 0.00 0.00 35.09 4.20
7104 7676 1.269998 CGATCCCACGAATAGTCCCTC 59.730 57.143 0.00 0.00 35.09 4.30
7105 7677 1.269998 GATCCCACGAATAGTCCCTCG 59.730 57.143 0.00 0.00 40.87 4.63
7106 7678 0.256752 TCCCACGAATAGTCCCTCGA 59.743 55.000 0.00 0.00 38.43 4.04
7107 7679 1.133575 TCCCACGAATAGTCCCTCGAT 60.134 52.381 0.00 0.00 38.43 3.59
7108 7680 1.269998 CCCACGAATAGTCCCTCGATC 59.730 57.143 0.00 0.00 38.43 3.69
7109 7681 1.069159 CCACGAATAGTCCCTCGATCG 60.069 57.143 9.36 9.36 38.43 3.69
7110 7682 1.069159 CACGAATAGTCCCTCGATCGG 60.069 57.143 16.41 5.93 38.43 4.18
7111 7683 1.202734 ACGAATAGTCCCTCGATCGGA 60.203 52.381 16.41 1.35 38.43 4.55
7112 7684 1.878088 CGAATAGTCCCTCGATCGGAA 59.122 52.381 16.41 0.00 37.23 4.30
7113 7685 2.095668 CGAATAGTCCCTCGATCGGAAG 60.096 54.545 16.41 6.03 37.23 3.46
7114 7686 1.912417 ATAGTCCCTCGATCGGAAGG 58.088 55.000 16.41 15.27 0.00 3.46
7115 7687 0.549950 TAGTCCCTCGATCGGAAGGT 59.450 55.000 16.41 2.69 0.00 3.50
7116 7688 0.752376 AGTCCCTCGATCGGAAGGTC 60.752 60.000 16.41 11.04 38.06 3.85
7123 7695 3.436001 GATCGGAAGGTCGAAAGCA 57.564 52.632 0.00 0.00 42.69 3.91
7124 7696 1.000145 GATCGGAAGGTCGAAAGCAC 59.000 55.000 0.00 0.00 42.69 4.40
7125 7697 0.736325 ATCGGAAGGTCGAAAGCACG 60.736 55.000 0.00 0.00 42.69 5.34
7126 7698 2.380410 CGGAAGGTCGAAAGCACGG 61.380 63.158 0.00 0.00 0.00 4.94
7127 7699 1.301479 GGAAGGTCGAAAGCACGGT 60.301 57.895 0.00 0.00 0.00 4.83
7128 7700 1.289800 GGAAGGTCGAAAGCACGGTC 61.290 60.000 0.00 0.00 0.00 4.79
7129 7701 0.319641 GAAGGTCGAAAGCACGGTCT 60.320 55.000 0.00 0.00 0.00 3.85
7130 7702 0.106149 AAGGTCGAAAGCACGGTCTT 59.894 50.000 0.00 0.00 0.00 3.01
7131 7703 0.106149 AGGTCGAAAGCACGGTCTTT 59.894 50.000 4.20 4.20 38.85 2.52
7132 7704 0.511653 GGTCGAAAGCACGGTCTTTC 59.488 55.000 16.76 16.76 45.10 2.62
7133 7705 1.499049 GTCGAAAGCACGGTCTTTCT 58.501 50.000 21.26 0.00 45.90 2.52
7134 7706 2.608752 GGTCGAAAGCACGGTCTTTCTA 60.609 50.000 21.26 12.89 45.90 2.10
7135 7707 2.407696 GTCGAAAGCACGGTCTTTCTAC 59.592 50.000 21.26 18.22 45.90 2.59
7136 7708 1.385743 CGAAAGCACGGTCTTTCTACG 59.614 52.381 21.26 11.10 45.90 3.51
7137 7709 2.669364 GAAAGCACGGTCTTTCTACGA 58.331 47.619 18.46 0.00 45.11 3.43
7138 7710 2.349297 AAGCACGGTCTTTCTACGAG 57.651 50.000 0.00 0.00 0.00 4.18
7139 7711 1.245732 AGCACGGTCTTTCTACGAGT 58.754 50.000 0.00 0.00 0.00 4.18
7140 7712 1.612463 AGCACGGTCTTTCTACGAGTT 59.388 47.619 0.00 0.00 0.00 3.01
7141 7713 1.719780 GCACGGTCTTTCTACGAGTTG 59.280 52.381 0.00 0.00 0.00 3.16
7142 7714 1.719780 CACGGTCTTTCTACGAGTTGC 59.280 52.381 0.00 0.00 0.00 4.17
7143 7715 1.338973 ACGGTCTTTCTACGAGTTGCA 59.661 47.619 0.00 0.00 0.00 4.08
7144 7716 2.223876 ACGGTCTTTCTACGAGTTGCAA 60.224 45.455 0.00 0.00 0.00 4.08
7145 7717 2.408704 CGGTCTTTCTACGAGTTGCAAG 59.591 50.000 0.00 0.00 0.00 4.01
7146 7718 2.157863 GGTCTTTCTACGAGTTGCAAGC 59.842 50.000 0.00 0.00 0.00 4.01
7147 7719 2.800544 GTCTTTCTACGAGTTGCAAGCA 59.199 45.455 0.00 0.00 0.00 3.91
7148 7720 3.433615 GTCTTTCTACGAGTTGCAAGCAT 59.566 43.478 0.00 0.00 0.00 3.79
7149 7721 4.625742 GTCTTTCTACGAGTTGCAAGCATA 59.374 41.667 0.00 0.00 0.00 3.14
7150 7722 4.625742 TCTTTCTACGAGTTGCAAGCATAC 59.374 41.667 0.00 0.00 0.00 2.39
7151 7723 2.526077 TCTACGAGTTGCAAGCATACG 58.474 47.619 0.00 4.31 0.00 3.06
7152 7724 1.588404 CTACGAGTTGCAAGCATACGG 59.412 52.381 0.00 8.97 0.00 4.02
7153 7725 0.320421 ACGAGTTGCAAGCATACGGT 60.320 50.000 0.00 9.40 0.00 4.83
7154 7726 0.370273 CGAGTTGCAAGCATACGGTC 59.630 55.000 0.00 0.00 0.00 4.79
7155 7727 1.726853 GAGTTGCAAGCATACGGTCT 58.273 50.000 0.00 0.00 0.00 3.85
7156 7728 2.076863 GAGTTGCAAGCATACGGTCTT 58.923 47.619 0.00 0.00 0.00 3.01
7157 7729 2.076863 AGTTGCAAGCATACGGTCTTC 58.923 47.619 0.00 0.00 0.00 2.87
7158 7730 1.804151 GTTGCAAGCATACGGTCTTCA 59.196 47.619 0.00 0.00 0.00 3.02
7159 7731 1.438651 TGCAAGCATACGGTCTTCAC 58.561 50.000 0.00 0.00 0.00 3.18
7160 7732 0.370273 GCAAGCATACGGTCTTCACG 59.630 55.000 0.00 0.00 37.36 4.35
7161 7733 1.990799 CAAGCATACGGTCTTCACGA 58.009 50.000 0.00 0.00 34.93 4.35
7162 7734 2.540515 CAAGCATACGGTCTTCACGAT 58.459 47.619 0.00 0.00 34.93 3.73
7163 7735 2.493713 AGCATACGGTCTTCACGATC 57.506 50.000 0.00 0.00 34.93 3.69
7164 7736 1.067212 AGCATACGGTCTTCACGATCC 59.933 52.381 0.00 0.00 34.93 3.36
7165 7737 1.755161 CATACGGTCTTCACGATCCG 58.245 55.000 0.00 0.00 46.98 4.18
7166 7738 0.666913 ATACGGTCTTCACGATCCGG 59.333 55.000 0.00 0.00 46.06 5.14
7167 7739 1.996786 TACGGTCTTCACGATCCGGC 61.997 60.000 0.00 0.00 46.06 6.13
7168 7740 2.577059 GGTCTTCACGATCCGGCA 59.423 61.111 0.00 0.00 0.00 5.69
7169 7741 1.519455 GGTCTTCACGATCCGGCAG 60.519 63.158 0.00 0.00 0.00 4.85
7170 7742 1.215647 GTCTTCACGATCCGGCAGT 59.784 57.895 0.00 0.00 0.00 4.40
7171 7743 0.454600 GTCTTCACGATCCGGCAGTA 59.545 55.000 0.00 0.00 0.00 2.74
7172 7744 0.454600 TCTTCACGATCCGGCAGTAC 59.545 55.000 0.00 0.00 0.00 2.73
7173 7745 0.456221 CTTCACGATCCGGCAGTACT 59.544 55.000 0.00 0.00 0.00 2.73
7174 7746 0.892755 TTCACGATCCGGCAGTACTT 59.107 50.000 0.00 0.00 0.00 2.24
7175 7747 0.454600 TCACGATCCGGCAGTACTTC 59.545 55.000 0.00 0.00 0.00 3.01
7176 7748 0.172578 CACGATCCGGCAGTACTTCA 59.827 55.000 0.00 0.00 0.00 3.02
7177 7749 0.172803 ACGATCCGGCAGTACTTCAC 59.827 55.000 0.00 0.00 0.00 3.18
7178 7750 0.527817 CGATCCGGCAGTACTTCACC 60.528 60.000 0.00 0.00 0.00 4.02
7179 7751 0.527817 GATCCGGCAGTACTTCACCG 60.528 60.000 17.78 17.78 45.21 4.94
7180 7752 1.255667 ATCCGGCAGTACTTCACCGT 61.256 55.000 21.18 6.92 44.14 4.83
7181 7753 1.445582 CCGGCAGTACTTCACCGTC 60.446 63.158 21.18 0.67 44.14 4.79
7182 7754 1.445582 CGGCAGTACTTCACCGTCC 60.446 63.158 16.87 2.04 40.77 4.79
7183 7755 1.669440 GGCAGTACTTCACCGTCCA 59.331 57.895 0.00 0.00 0.00 4.02
7184 7756 0.389948 GGCAGTACTTCACCGTCCAG 60.390 60.000 0.00 0.00 0.00 3.86
7185 7757 0.601558 GCAGTACTTCACCGTCCAGA 59.398 55.000 0.00 0.00 0.00 3.86
7186 7758 1.402984 GCAGTACTTCACCGTCCAGAG 60.403 57.143 0.00 0.00 0.00 3.35
7187 7759 0.889306 AGTACTTCACCGTCCAGAGC 59.111 55.000 0.00 0.00 0.00 4.09
7188 7760 0.889306 GTACTTCACCGTCCAGAGCT 59.111 55.000 0.00 0.00 0.00 4.09
7189 7761 1.272769 GTACTTCACCGTCCAGAGCTT 59.727 52.381 0.00 0.00 0.00 3.74
7190 7762 0.034059 ACTTCACCGTCCAGAGCTTG 59.966 55.000 0.00 0.00 0.00 4.01
7191 7763 0.034059 CTTCACCGTCCAGAGCTTGT 59.966 55.000 0.00 0.00 0.00 3.16
7192 7764 1.272490 CTTCACCGTCCAGAGCTTGTA 59.728 52.381 0.00 0.00 0.00 2.41
7193 7765 0.888619 TCACCGTCCAGAGCTTGTAG 59.111 55.000 0.00 0.00 0.00 2.74
7194 7766 0.603569 CACCGTCCAGAGCTTGTAGT 59.396 55.000 0.00 0.00 0.00 2.73
7195 7767 0.889306 ACCGTCCAGAGCTTGTAGTC 59.111 55.000 0.00 0.00 0.00 2.59
7196 7768 0.179161 CCGTCCAGAGCTTGTAGTCG 60.179 60.000 0.00 0.00 0.00 4.18
7197 7769 0.798771 CGTCCAGAGCTTGTAGTCGC 60.799 60.000 0.00 0.00 0.00 5.19
7198 7770 0.458716 GTCCAGAGCTTGTAGTCGCC 60.459 60.000 0.00 0.00 0.00 5.54
7199 7771 1.517257 CCAGAGCTTGTAGTCGCCG 60.517 63.158 0.00 0.00 0.00 6.46
7200 7772 1.517257 CAGAGCTTGTAGTCGCCGG 60.517 63.158 0.00 0.00 0.00 6.13
7201 7773 1.677966 AGAGCTTGTAGTCGCCGGA 60.678 57.895 5.05 0.00 0.00 5.14
7202 7774 1.226717 GAGCTTGTAGTCGCCGGAG 60.227 63.158 5.05 0.00 0.00 4.63
7203 7775 1.654954 GAGCTTGTAGTCGCCGGAGA 61.655 60.000 5.05 3.81 0.00 3.71
7204 7776 1.214589 GCTTGTAGTCGCCGGAGAA 59.785 57.895 10.32 0.00 0.00 2.87
7205 7777 0.179108 GCTTGTAGTCGCCGGAGAAT 60.179 55.000 13.78 13.78 0.00 2.40
7206 7778 1.739371 GCTTGTAGTCGCCGGAGAATT 60.739 52.381 14.61 6.07 0.00 2.17
7207 7779 2.480759 GCTTGTAGTCGCCGGAGAATTA 60.481 50.000 14.61 5.01 0.00 1.40
7208 7780 3.372954 CTTGTAGTCGCCGGAGAATTAG 58.627 50.000 14.61 5.66 0.00 1.73
7209 7781 2.646930 TGTAGTCGCCGGAGAATTAGA 58.353 47.619 14.61 3.66 0.00 2.10
7210 7782 2.617308 TGTAGTCGCCGGAGAATTAGAG 59.383 50.000 14.61 0.00 0.00 2.43
7211 7783 2.054232 AGTCGCCGGAGAATTAGAGA 57.946 50.000 10.32 0.00 0.00 3.10
7212 7784 1.950909 AGTCGCCGGAGAATTAGAGAG 59.049 52.381 10.32 0.00 0.00 3.20
7213 7785 1.001158 GTCGCCGGAGAATTAGAGAGG 60.001 57.143 10.32 0.00 0.00 3.69
7214 7786 1.133884 TCGCCGGAGAATTAGAGAGGA 60.134 52.381 5.05 0.00 0.00 3.71
7215 7787 1.268352 CGCCGGAGAATTAGAGAGGAG 59.732 57.143 5.05 0.00 0.00 3.69
7216 7788 2.588620 GCCGGAGAATTAGAGAGGAGA 58.411 52.381 5.05 0.00 0.00 3.71
7217 7789 3.161866 GCCGGAGAATTAGAGAGGAGAT 58.838 50.000 5.05 0.00 0.00 2.75
7218 7790 3.576550 GCCGGAGAATTAGAGAGGAGATT 59.423 47.826 5.05 0.00 0.00 2.40
7219 7791 4.767928 GCCGGAGAATTAGAGAGGAGATTA 59.232 45.833 5.05 0.00 0.00 1.75
7220 7792 5.105917 GCCGGAGAATTAGAGAGGAGATTAG 60.106 48.000 5.05 0.00 0.00 1.73
7221 7793 6.242396 CCGGAGAATTAGAGAGGAGATTAGA 58.758 44.000 0.00 0.00 0.00 2.10
7222 7794 6.717540 CCGGAGAATTAGAGAGGAGATTAGAA 59.282 42.308 0.00 0.00 0.00 2.10
7223 7795 7.308951 CCGGAGAATTAGAGAGGAGATTAGAAC 60.309 44.444 0.00 0.00 0.00 3.01
7224 7796 7.308951 CGGAGAATTAGAGAGGAGATTAGAACC 60.309 44.444 0.00 0.00 0.00 3.62
7225 7797 7.507616 GGAGAATTAGAGAGGAGATTAGAACCA 59.492 40.741 0.00 0.00 0.00 3.67
7226 7798 8.245195 AGAATTAGAGAGGAGATTAGAACCAC 57.755 38.462 0.00 0.00 0.00 4.16
7227 7799 7.841729 AGAATTAGAGAGGAGATTAGAACCACA 59.158 37.037 0.00 0.00 0.00 4.17
7228 7800 6.777213 TTAGAGAGGAGATTAGAACCACAC 57.223 41.667 0.00 0.00 0.00 3.82
7229 7801 4.941713 AGAGAGGAGATTAGAACCACACT 58.058 43.478 0.00 0.00 0.00 3.55
7230 7802 4.709397 AGAGAGGAGATTAGAACCACACTG 59.291 45.833 0.00 0.00 0.00 3.66
7231 7803 3.772025 AGAGGAGATTAGAACCACACTGG 59.228 47.826 0.00 0.00 45.02 4.00
7232 7804 3.769844 GAGGAGATTAGAACCACACTGGA 59.230 47.826 0.00 0.00 40.96 3.86
7233 7805 3.515901 AGGAGATTAGAACCACACTGGAC 59.484 47.826 0.00 0.00 40.96 4.02
7234 7806 3.515901 GGAGATTAGAACCACACTGGACT 59.484 47.826 0.00 0.00 40.96 3.85
7235 7807 4.020128 GGAGATTAGAACCACACTGGACTT 60.020 45.833 0.00 0.00 40.96 3.01
7236 7808 5.153950 AGATTAGAACCACACTGGACTTC 57.846 43.478 0.00 0.00 40.96 3.01
7237 7809 4.841246 AGATTAGAACCACACTGGACTTCT 59.159 41.667 0.00 0.00 40.96 2.85
7238 7810 6.017192 AGATTAGAACCACACTGGACTTCTA 58.983 40.000 0.00 0.00 40.96 2.10
7239 7811 6.497259 AGATTAGAACCACACTGGACTTCTAA 59.503 38.462 12.82 12.82 43.30 2.10
7240 7812 6.681729 TTAGAACCACACTGGACTTCTAAT 57.318 37.500 8.81 0.00 38.80 1.73
7241 7813 5.568620 AGAACCACACTGGACTTCTAATT 57.431 39.130 0.00 0.00 40.96 1.40
7242 7814 6.681729 AGAACCACACTGGACTTCTAATTA 57.318 37.500 0.00 0.00 40.96 1.40
7243 7815 7.259088 AGAACCACACTGGACTTCTAATTAT 57.741 36.000 0.00 0.00 40.96 1.28
7244 7816 7.106239 AGAACCACACTGGACTTCTAATTATG 58.894 38.462 0.00 0.00 40.96 1.90
7245 7817 6.620877 ACCACACTGGACTTCTAATTATGA 57.379 37.500 0.00 0.00 40.96 2.15
7246 7818 7.200434 ACCACACTGGACTTCTAATTATGAT 57.800 36.000 0.00 0.00 40.96 2.45
7247 7819 7.050377 ACCACACTGGACTTCTAATTATGATG 58.950 38.462 0.00 0.00 40.96 3.07
7248 7820 7.092891 ACCACACTGGACTTCTAATTATGATGA 60.093 37.037 0.00 0.00 40.96 2.92
7249 7821 7.935755 CCACACTGGACTTCTAATTATGATGAT 59.064 37.037 0.00 0.00 40.96 2.45
7250 7822 9.334947 CACACTGGACTTCTAATTATGATGATT 57.665 33.333 0.00 0.00 0.00 2.57
7286 7858 9.829507 AGATCTAACTCAAATTGATCAACTAGG 57.170 33.333 11.07 1.16 36.82 3.02
7287 7859 9.823647 GATCTAACTCAAATTGATCAACTAGGA 57.176 33.333 11.07 5.61 35.11 2.94
7289 7861 9.823647 TCTAACTCAAATTGATCAACTAGGATC 57.176 33.333 11.07 0.00 43.19 3.36
7304 7876 9.922477 TCAACTAGGATCAACTAGAAATAGAGA 57.078 33.333 11.63 0.00 42.40 3.10
7307 7879 9.930158 ACTAGGATCAACTAGAAATAGAGAACT 57.070 33.333 11.63 0.00 42.40 3.01
7316 7888 8.404107 ACTAGAAATAGAGAACTAGAGGATGC 57.596 38.462 0.00 0.00 36.72 3.91
7317 7889 8.224720 ACTAGAAATAGAGAACTAGAGGATGCT 58.775 37.037 0.00 0.00 36.72 3.79
7318 7890 7.524717 AGAAATAGAGAACTAGAGGATGCTC 57.475 40.000 6.03 6.03 31.78 4.26
7319 7891 6.493458 AGAAATAGAGAACTAGAGGATGCTCC 59.507 42.308 11.06 0.00 32.31 4.70
7320 7892 3.678965 AGAGAACTAGAGGATGCTCCA 57.321 47.619 11.06 0.00 39.61 3.86
7321 7893 3.987745 AGAGAACTAGAGGATGCTCCAA 58.012 45.455 11.06 0.00 39.61 3.53
7322 7894 4.357325 AGAGAACTAGAGGATGCTCCAAA 58.643 43.478 11.06 0.00 39.61 3.28
7323 7895 4.780021 AGAGAACTAGAGGATGCTCCAAAA 59.220 41.667 11.06 0.00 39.61 2.44
7324 7896 4.837972 AGAACTAGAGGATGCTCCAAAAC 58.162 43.478 11.06 0.77 39.61 2.43
7325 7897 4.534103 AGAACTAGAGGATGCTCCAAAACT 59.466 41.667 11.06 3.10 39.61 2.66
7326 7898 4.917906 ACTAGAGGATGCTCCAAAACTT 57.082 40.909 11.06 0.00 39.61 2.66
7327 7899 4.583871 ACTAGAGGATGCTCCAAAACTTG 58.416 43.478 11.06 0.00 39.61 3.16
7328 7900 3.515602 AGAGGATGCTCCAAAACTTGT 57.484 42.857 11.06 0.00 39.61 3.16
7329 7901 3.152341 AGAGGATGCTCCAAAACTTGTG 58.848 45.455 11.06 0.00 39.61 3.33
7330 7902 2.887152 GAGGATGCTCCAAAACTTGTGT 59.113 45.455 2.14 0.00 39.61 3.72
7331 7903 4.072131 GAGGATGCTCCAAAACTTGTGTA 58.928 43.478 2.14 0.00 39.61 2.90
7332 7904 4.666512 AGGATGCTCCAAAACTTGTGTAT 58.333 39.130 5.21 0.00 39.61 2.29
7333 7905 4.702131 AGGATGCTCCAAAACTTGTGTATC 59.298 41.667 5.21 0.00 39.61 2.24
7334 7906 4.458989 GGATGCTCCAAAACTTGTGTATCA 59.541 41.667 0.00 0.00 36.28 2.15
7335 7907 5.048083 GGATGCTCCAAAACTTGTGTATCAA 60.048 40.000 0.00 0.00 36.28 2.57
7336 7908 5.843673 TGCTCCAAAACTTGTGTATCAAA 57.156 34.783 0.00 0.00 35.48 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 119 4.124970 GACTTGTAAACTGAAACGGAGGT 58.875 43.478 0.00 0.00 0.00 3.85
89 124 5.332055 CGTGTAGGACTTGTAAACTGAAACG 60.332 44.000 0.00 0.00 0.00 3.60
90 125 5.521372 ACGTGTAGGACTTGTAAACTGAAAC 59.479 40.000 0.00 0.00 0.00 2.78
92 127 5.266733 ACGTGTAGGACTTGTAAACTGAA 57.733 39.130 0.00 0.00 0.00 3.02
93 128 4.924305 ACGTGTAGGACTTGTAAACTGA 57.076 40.909 0.00 0.00 0.00 3.41
94 129 8.404000 AGATATACGTGTAGGACTTGTAAACTG 58.596 37.037 0.00 0.00 0.00 3.16
95 130 8.517062 AGATATACGTGTAGGACTTGTAAACT 57.483 34.615 0.00 0.00 0.00 2.66
96 131 9.875675 CTAGATATACGTGTAGGACTTGTAAAC 57.124 37.037 0.00 0.00 0.00 2.01
98 133 8.213679 ACCTAGATATACGTGTAGGACTTGTAA 58.786 37.037 5.92 0.00 36.34 2.41
101 136 7.013083 ACAACCTAGATATACGTGTAGGACTTG 59.987 40.741 5.92 3.99 36.34 3.16
103 138 6.599445 ACAACCTAGATATACGTGTAGGACT 58.401 40.000 5.92 4.36 36.34 3.85
105 140 6.594744 TGACAACCTAGATATACGTGTAGGA 58.405 40.000 5.92 0.00 36.34 2.94
172 219 6.260271 ACTTCCGAGTTTCTACTTTCAAAAGG 59.740 38.462 7.37 0.00 34.81 3.11
174 221 7.619964 AACTTCCGAGTTTCTACTTTCAAAA 57.380 32.000 0.00 0.00 43.48 2.44
188 235 9.457436 AAAATATACCAACATAAACTTCCGAGT 57.543 29.630 0.00 0.00 37.87 4.18
221 268 8.467963 TTGACCGACCTAATACAAGTCATATA 57.532 34.615 0.00 0.00 33.21 0.86
222 269 6.971726 TGACCGACCTAATACAAGTCATAT 57.028 37.500 0.00 0.00 0.00 1.78
224 271 5.670792 TTGACCGACCTAATACAAGTCAT 57.329 39.130 0.00 0.00 33.21 3.06
225 272 5.471556 TTTGACCGACCTAATACAAGTCA 57.528 39.130 0.00 0.00 0.00 3.41
226 273 6.592607 TCAATTTGACCGACCTAATACAAGTC 59.407 38.462 0.00 0.00 0.00 3.01
227 274 6.469410 TCAATTTGACCGACCTAATACAAGT 58.531 36.000 0.00 0.00 0.00 3.16
228 275 6.978343 TCAATTTGACCGACCTAATACAAG 57.022 37.500 0.00 0.00 0.00 3.16
230 277 6.537301 GTCATCAATTTGACCGACCTAATACA 59.463 38.462 15.26 0.00 40.11 2.29
231 278 6.945072 GTCATCAATTTGACCGACCTAATAC 58.055 40.000 15.26 0.00 40.11 1.89
242 289 5.696724 CGTATCCCTAGGTCATCAATTTGAC 59.303 44.000 8.29 2.20 44.27 3.18
245 292 5.611374 CACGTATCCCTAGGTCATCAATTT 58.389 41.667 8.29 0.00 0.00 1.82
249 296 1.961394 GCACGTATCCCTAGGTCATCA 59.039 52.381 8.29 0.00 0.00 3.07
250 297 1.961394 TGCACGTATCCCTAGGTCATC 59.039 52.381 8.29 0.00 0.00 2.92
251 298 1.687123 GTGCACGTATCCCTAGGTCAT 59.313 52.381 8.29 1.72 0.00 3.06
254 301 2.012902 GCGTGCACGTATCCCTAGGT 62.013 60.000 36.80 0.00 42.22 3.08
255 302 1.299926 GCGTGCACGTATCCCTAGG 60.300 63.158 36.80 0.06 42.22 3.02
257 304 2.788640 GGGCGTGCACGTATCCCTA 61.789 63.158 33.36 0.00 42.22 3.53
259 306 4.157120 AGGGCGTGCACGTATCCC 62.157 66.667 33.55 33.55 42.22 3.85
261 308 0.458889 TTACAGGGCGTGCACGTATC 60.459 55.000 36.80 25.79 42.22 2.24
262 309 0.037139 TTTACAGGGCGTGCACGTAT 60.037 50.000 36.80 21.81 42.22 3.06
263 310 0.037139 ATTTACAGGGCGTGCACGTA 60.037 50.000 36.80 20.26 42.22 3.57
264 311 0.887387 AATTTACAGGGCGTGCACGT 60.887 50.000 36.80 21.32 42.22 4.49
266 313 0.878416 TCAATTTACAGGGCGTGCAC 59.122 50.000 6.82 6.82 0.00 4.57
268 315 1.448985 TCTCAATTTACAGGGCGTGC 58.551 50.000 7.17 0.00 0.00 5.34
269 316 3.751175 TCTTTCTCAATTTACAGGGCGTG 59.249 43.478 5.50 5.50 0.00 5.34
271 318 3.375299 CCTCTTTCTCAATTTACAGGGCG 59.625 47.826 0.00 0.00 0.00 6.13
272 319 4.336280 ACCTCTTTCTCAATTTACAGGGC 58.664 43.478 0.00 0.00 0.00 5.19
273 320 6.712276 ACTACCTCTTTCTCAATTTACAGGG 58.288 40.000 0.00 0.00 0.00 4.45
274 321 8.532819 AGTACTACCTCTTTCTCAATTTACAGG 58.467 37.037 0.00 0.00 0.00 4.00
319 377 0.534873 TGATGATCCTTCGCCGTGAA 59.465 50.000 0.00 0.00 34.74 3.18
323 381 2.090400 ATCATGATGATCCTTCGCCG 57.910 50.000 7.59 0.00 29.59 6.46
324 382 3.311871 GCATATCATGATGATCCTTCGCC 59.688 47.826 18.72 0.00 38.26 5.54
325 383 3.311871 GGCATATCATGATGATCCTTCGC 59.688 47.826 18.72 8.26 38.26 4.70
386 445 2.862541 TGGCAGATAGTTGTTGCTTGT 58.137 42.857 0.00 0.00 37.93 3.16
416 475 2.862140 GCCGTTTCCACTTTTGTCATGG 60.862 50.000 0.00 0.00 34.58 3.66
425 484 0.519961 GCGTATTGCCGTTTCCACTT 59.480 50.000 0.00 0.00 37.76 3.16
437 496 5.917541 AACGGACAATAATAGGCGTATTG 57.082 39.130 19.37 9.77 42.29 1.90
439 498 6.088016 TGTAACGGACAATAATAGGCGTAT 57.912 37.500 0.00 0.00 34.15 3.06
447 650 7.011482 GCTTTCAGAGATGTAACGGACAATAAT 59.989 37.037 0.00 0.00 42.78 1.28
520 723 4.787135 TGTTATGTATGGCTGGATCCAA 57.213 40.909 17.00 0.60 39.96 3.53
538 741 8.964476 ACCGAACATTTCTTCTGATATATGTT 57.036 30.769 0.00 0.00 38.50 2.71
541 744 9.490379 GGTTACCGAACATTTCTTCTGATATAT 57.510 33.333 0.00 0.00 37.29 0.86
616 819 9.678981 AATAAGTCTGTATTAGGGGGTGTATAA 57.321 33.333 0.00 0.00 0.00 0.98
685 907 9.650714 TCCTTGCTTTTGTACTAGGAGTATATA 57.349 33.333 0.00 0.00 32.65 0.86
686 908 8.548880 TCCTTGCTTTTGTACTAGGAGTATAT 57.451 34.615 0.00 0.00 32.65 0.86
687 909 7.966339 TCCTTGCTTTTGTACTAGGAGTATA 57.034 36.000 0.00 0.00 32.65 1.47
688 910 6.869206 TCCTTGCTTTTGTACTAGGAGTAT 57.131 37.500 0.00 0.00 32.65 2.12
689 911 6.869206 ATCCTTGCTTTTGTACTAGGAGTA 57.131 37.500 0.00 0.00 35.43 2.59
690 912 5.763876 ATCCTTGCTTTTGTACTAGGAGT 57.236 39.130 0.00 0.00 35.43 3.85
691 913 7.113658 TCTATCCTTGCTTTTGTACTAGGAG 57.886 40.000 0.00 0.00 35.43 3.69
692 914 7.490657 TTCTATCCTTGCTTTTGTACTAGGA 57.509 36.000 0.00 0.00 36.33 2.94
693 915 8.451748 GTTTTCTATCCTTGCTTTTGTACTAGG 58.548 37.037 0.00 0.00 0.00 3.02
694 916 8.451748 GGTTTTCTATCCTTGCTTTTGTACTAG 58.548 37.037 0.00 0.00 0.00 2.57
735 957 9.557338 GTTAATTGCGTTGGTTTTATGTATGTA 57.443 29.630 0.00 0.00 0.00 2.29
736 958 7.542824 GGTTAATTGCGTTGGTTTTATGTATGT 59.457 33.333 0.00 0.00 0.00 2.29
737 959 7.757624 AGGTTAATTGCGTTGGTTTTATGTATG 59.242 33.333 0.00 0.00 0.00 2.39
757 979 2.902608 TGGAGAAGCCAGAGAGGTTAA 58.097 47.619 0.00 0.00 43.33 2.01
1285 1509 2.512515 GCACTCGGAGATGGTGGC 60.513 66.667 12.86 1.89 33.94 5.01
1521 1748 0.331278 TGCAAGAACCATGTAGGGGG 59.669 55.000 0.00 0.00 43.89 5.40
1562 1789 0.582005 GCATAACGCCAGAATCGGAC 59.418 55.000 0.00 0.00 32.94 4.79
1565 1792 0.504384 CGAGCATAACGCCAGAATCG 59.496 55.000 0.00 0.00 44.04 3.34
1566 1793 1.258982 CACGAGCATAACGCCAGAATC 59.741 52.381 0.00 0.00 44.04 2.52
1567 1794 1.290203 CACGAGCATAACGCCAGAAT 58.710 50.000 0.00 0.00 44.04 2.40
1662 1889 4.492570 CGTTGAACCGCAGATTGAATCTAC 60.493 45.833 7.46 0.96 37.58 2.59
1691 1918 9.047871 GCACAAAGATAACAAATCTACGTAAAC 57.952 33.333 0.00 0.00 0.00 2.01
1754 1981 6.404734 GCAATGGGGAACTAAACAACTATCTG 60.405 42.308 0.00 0.00 0.00 2.90
1788 2015 5.907391 GCACGGCAAGTTAATATAACATCAC 59.093 40.000 3.37 0.00 0.00 3.06
1895 2123 1.948635 CCCCGCGTGCAAAACAAAG 60.949 57.895 4.92 0.00 0.00 2.77
1909 2137 0.525761 CCAACATTGCAAGTACCCCG 59.474 55.000 4.94 0.00 0.00 5.73
1915 2143 1.993956 TACAGGCCAACATTGCAAGT 58.006 45.000 5.01 0.17 0.00 3.16
2143 2371 3.565764 TCTGCCCAAGAGATACCAATG 57.434 47.619 0.00 0.00 0.00 2.82
2510 2752 3.650281 ACATCCACACATGCCAATCTA 57.350 42.857 0.00 0.00 0.00 1.98
2531 2773 9.084533 AGCCAATTTGGAACTGTTATTTACTTA 57.915 29.630 19.76 0.00 40.96 2.24
2600 2842 0.780002 GCAAAGCAACAAGATGTGCG 59.220 50.000 0.00 0.00 32.41 5.34
2634 2876 7.228706 AGGAAAACATTGTAGTAAACTCCTGTG 59.771 37.037 0.00 0.00 0.00 3.66
2638 2880 8.890718 GGATAGGAAAACATTGTAGTAAACTCC 58.109 37.037 0.00 0.00 0.00 3.85
2709 2953 8.301252 ACTGTTACAATTAAACAAAGGAGGTT 57.699 30.769 6.91 0.00 36.46 3.50
2847 3092 2.982470 GCAGCGTGAAAATTCCTTTCTG 59.018 45.455 0.00 0.00 43.42 3.02
2957 3202 7.369803 AGATACACTTTCTACAAACTGCATG 57.630 36.000 0.00 0.00 0.00 4.06
3044 3289 2.649816 ACCTAAGCTTCTCAATTGGGGT 59.350 45.455 0.00 0.00 0.00 4.95
3429 3709 1.200020 GCAGGTGTACAGTTCATTGGC 59.800 52.381 0.00 0.00 0.00 4.52
3445 3725 2.684881 AGATAGTTCGCCAAATTGCAGG 59.315 45.455 0.00 0.00 0.00 4.85
3581 3861 2.429250 TGAAGAACACTCGAGGTCAACA 59.571 45.455 18.41 11.39 0.00 3.33
3591 3871 3.559242 GCTGCCAGATATGAAGAACACTC 59.441 47.826 0.00 0.00 0.00 3.51
3693 3973 7.386848 CCATGAACAAATGCTTGAGAAAAGATT 59.613 33.333 0.00 0.00 36.33 2.40
4054 4339 6.855763 ATTGTGATCAGCCCTAAAATCAAA 57.144 33.333 0.00 0.00 30.45 2.69
4732 5029 2.223525 GGTCTTCCGTAGATTCTCCACG 60.224 54.545 2.63 2.63 34.79 4.94
5241 5546 7.786030 TCTGGACATAGTTTTCTTCTATCCAG 58.214 38.462 9.67 9.67 39.10 3.86
5363 5668 2.493278 CTGATCACCAATTTCCACCCAC 59.507 50.000 0.00 0.00 0.00 4.61
5364 5669 2.109834 ACTGATCACCAATTTCCACCCA 59.890 45.455 0.00 0.00 0.00 4.51
5365 5670 2.807676 ACTGATCACCAATTTCCACCC 58.192 47.619 0.00 0.00 0.00 4.61
5366 5671 3.826157 TGAACTGATCACCAATTTCCACC 59.174 43.478 0.00 0.00 31.50 4.61
5458 5763 4.418392 CATAAAGGAACAAGATGTGCAGC 58.582 43.478 0.00 0.00 0.00 5.25
5486 5796 6.545504 AAGTTGTGACAACTGCATTACTAG 57.454 37.500 29.32 0.00 0.00 2.57
5748 6058 8.109705 AGATGCAACATAACATAAACAACTGA 57.890 30.769 0.00 0.00 0.00 3.41
6189 6748 0.322997 TGGGGTTTATTGACTGCCCG 60.323 55.000 0.00 0.00 40.18 6.13
6327 6886 0.445436 CATGGTGCGCTCAAGACTTC 59.555 55.000 9.73 0.00 0.00 3.01
6401 6960 5.813157 CCTTTTATCTTTCGAGGACCTCTTC 59.187 44.000 19.39 0.00 0.00 2.87
6402 6961 5.338463 CCCTTTTATCTTTCGAGGACCTCTT 60.338 44.000 19.39 0.43 0.00 2.85
6403 6962 4.162509 CCCTTTTATCTTTCGAGGACCTCT 59.837 45.833 19.39 1.95 0.00 3.69
6404 6963 4.081031 ACCCTTTTATCTTTCGAGGACCTC 60.081 45.833 11.87 11.87 0.00 3.85
6462 7027 3.889134 CTGCAGAACGAGCCAGCCA 62.889 63.158 8.42 0.00 0.00 4.75
6538 7103 6.351711 GGTATAAAACGAACTAGGGGAACAT 58.648 40.000 0.00 0.00 0.00 2.71
6575 7146 6.861065 TTAGAACAACAACAGACTTCATCC 57.139 37.500 0.00 0.00 0.00 3.51
6582 7153 4.497507 GCCAGGTTTAGAACAACAACAGAC 60.498 45.833 0.00 0.00 0.00 3.51
6584 7155 3.548014 CGCCAGGTTTAGAACAACAACAG 60.548 47.826 0.00 0.00 0.00 3.16
6601 7172 4.213270 TCAACATAAGTCAACTTTCGCCAG 59.787 41.667 0.00 0.00 37.40 4.85
6660 7231 1.549203 CAACCATTCACCCCTTCCAG 58.451 55.000 0.00 0.00 0.00 3.86
6697 7268 0.237498 GGAACGAAACTTTCAGCCCG 59.763 55.000 2.49 0.00 0.00 6.13
6715 7287 1.243342 TTGGCATGACGCTCCTTTGG 61.243 55.000 0.00 0.00 41.91 3.28
6718 7290 1.033746 CCATTGGCATGACGCTCCTT 61.034 55.000 0.00 0.00 41.91 3.36
6719 7291 1.452651 CCATTGGCATGACGCTCCT 60.453 57.895 0.00 0.00 41.91 3.69
6779 7351 4.380867 GCAAATGAACAATACTCCAGTGGG 60.381 45.833 9.92 2.47 0.00 4.61
6793 7365 6.985188 TCAGACCTATTACTGCAAATGAAC 57.015 37.500 0.00 0.00 34.57 3.18
6842 7414 3.721035 ACAGCACTCAAATTTCTTTGGC 58.279 40.909 0.00 0.00 41.74 4.52
6858 7430 2.149383 ACCCAGGAGCAGAACAGCA 61.149 57.895 0.00 0.00 36.85 4.41
6859 7431 1.673665 CACCCAGGAGCAGAACAGC 60.674 63.158 0.00 0.00 0.00 4.40
6860 7432 1.673665 GCACCCAGGAGCAGAACAG 60.674 63.158 0.83 0.00 0.00 3.16
6863 7435 1.134007 CATATGCACCCAGGAGCAGAA 60.134 52.381 14.15 5.80 44.08 3.02
6865 7437 1.170919 GCATATGCACCCAGGAGCAG 61.171 60.000 22.84 2.69 44.08 4.24
6867 7439 3.755434 GCATATGCACCCAGGAGC 58.245 61.111 22.84 0.00 41.59 4.70
6876 7448 7.614155 ACTGTTCATACCAGGTGCATATGCA 62.614 44.000 26.32 26.32 40.45 3.96
6877 7449 3.213506 TGTTCATACCAGGTGCATATGC 58.786 45.455 21.09 21.09 42.50 3.14
6878 7450 4.454678 ACTGTTCATACCAGGTGCATATG 58.545 43.478 0.76 0.00 34.16 1.78
6879 7451 4.778213 ACTGTTCATACCAGGTGCATAT 57.222 40.909 0.76 0.00 34.16 1.78
6880 7452 4.714802 ACTACTGTTCATACCAGGTGCATA 59.285 41.667 0.76 0.00 34.16 3.14
6881 7453 3.519510 ACTACTGTTCATACCAGGTGCAT 59.480 43.478 0.76 0.00 34.16 3.96
6916 7488 8.871686 ATCAGAAACTTCCAAAATGTGTTAAC 57.128 30.769 0.00 0.00 0.00 2.01
6917 7489 9.883142 AAATCAGAAACTTCCAAAATGTGTTAA 57.117 25.926 0.00 0.00 0.00 2.01
6919 7491 8.791327 AAAATCAGAAACTTCCAAAATGTGTT 57.209 26.923 0.00 0.00 0.00 3.32
6920 7492 8.791327 AAAAATCAGAAACTTCCAAAATGTGT 57.209 26.923 0.00 0.00 0.00 3.72
6959 7531 1.302383 TGCGCCGGATCGTGAAAATT 61.302 50.000 5.05 0.00 0.00 1.82
6960 7532 1.743623 TGCGCCGGATCGTGAAAAT 60.744 52.632 5.05 0.00 0.00 1.82
6961 7533 2.357638 TGCGCCGGATCGTGAAAA 60.358 55.556 5.05 0.00 0.00 2.29
6962 7534 3.115892 GTGCGCCGGATCGTGAAA 61.116 61.111 5.05 0.00 0.00 2.69
6972 7544 3.573489 GAAACTTCACCGTGCGCCG 62.573 63.158 4.18 8.27 0.00 6.46
6973 7545 0.947180 TAGAAACTTCACCGTGCGCC 60.947 55.000 4.18 0.00 0.00 6.53
6974 7546 0.438830 CTAGAAACTTCACCGTGCGC 59.561 55.000 0.00 0.00 0.00 6.09
6975 7547 2.060326 TCTAGAAACTTCACCGTGCG 57.940 50.000 0.00 0.00 0.00 5.34
6976 7548 2.673368 CCATCTAGAAACTTCACCGTGC 59.327 50.000 0.00 0.00 0.00 5.34
6977 7549 3.679980 CACCATCTAGAAACTTCACCGTG 59.320 47.826 0.00 0.00 0.00 4.94
6978 7550 3.323979 ACACCATCTAGAAACTTCACCGT 59.676 43.478 0.00 0.00 0.00 4.83
6979 7551 3.926616 ACACCATCTAGAAACTTCACCG 58.073 45.455 0.00 0.00 0.00 4.94
6980 7552 7.923414 ATTAACACCATCTAGAAACTTCACC 57.077 36.000 0.00 0.00 0.00 4.02
6985 7557 9.349713 TGTGAAAATTAACACCATCTAGAAACT 57.650 29.630 0.00 0.00 36.35 2.66
7015 7587 9.167311 CCAGAGCTTATAAACTACTGTGAAAAT 57.833 33.333 0.00 0.00 0.00 1.82
7016 7588 8.372459 TCCAGAGCTTATAAACTACTGTGAAAA 58.628 33.333 0.00 0.00 0.00 2.29
7017 7589 7.817962 GTCCAGAGCTTATAAACTACTGTGAAA 59.182 37.037 0.00 0.00 0.00 2.69
7018 7590 7.321153 GTCCAGAGCTTATAAACTACTGTGAA 58.679 38.462 0.00 0.66 0.00 3.18
7019 7591 6.404403 CGTCCAGAGCTTATAAACTACTGTGA 60.404 42.308 0.00 7.64 0.00 3.58
7020 7592 5.744345 CGTCCAGAGCTTATAAACTACTGTG 59.256 44.000 0.00 5.34 0.00 3.66
7021 7593 5.163540 CCGTCCAGAGCTTATAAACTACTGT 60.164 44.000 0.00 0.00 0.00 3.55
7022 7594 5.163540 ACCGTCCAGAGCTTATAAACTACTG 60.164 44.000 0.00 0.00 0.00 2.74
7023 7595 4.954826 ACCGTCCAGAGCTTATAAACTACT 59.045 41.667 0.00 0.00 0.00 2.57
7024 7596 5.041940 CACCGTCCAGAGCTTATAAACTAC 58.958 45.833 0.00 0.00 0.00 2.73
7025 7597 4.951715 TCACCGTCCAGAGCTTATAAACTA 59.048 41.667 0.00 0.00 0.00 2.24
7026 7598 3.767673 TCACCGTCCAGAGCTTATAAACT 59.232 43.478 0.00 0.00 0.00 2.66
7027 7599 4.119442 TCACCGTCCAGAGCTTATAAAC 57.881 45.455 0.00 0.00 0.00 2.01
7028 7600 4.222145 ACTTCACCGTCCAGAGCTTATAAA 59.778 41.667 0.00 0.00 0.00 1.40
7029 7601 3.767673 ACTTCACCGTCCAGAGCTTATAA 59.232 43.478 0.00 0.00 0.00 0.98
7030 7602 3.362706 ACTTCACCGTCCAGAGCTTATA 58.637 45.455 0.00 0.00 0.00 0.98
7031 7603 2.180276 ACTTCACCGTCCAGAGCTTAT 58.820 47.619 0.00 0.00 0.00 1.73
7032 7604 1.629043 ACTTCACCGTCCAGAGCTTA 58.371 50.000 0.00 0.00 0.00 3.09
7033 7605 0.759346 AACTTCACCGTCCAGAGCTT 59.241 50.000 0.00 0.00 0.00 3.74
7034 7606 0.759346 AAACTTCACCGTCCAGAGCT 59.241 50.000 0.00 0.00 0.00 4.09
7035 7607 1.149148 GAAACTTCACCGTCCAGAGC 58.851 55.000 0.00 0.00 0.00 4.09
7036 7608 2.035961 TCAGAAACTTCACCGTCCAGAG 59.964 50.000 0.00 0.00 0.00 3.35
7037 7609 2.036387 TCAGAAACTTCACCGTCCAGA 58.964 47.619 0.00 0.00 0.00 3.86
7038 7610 2.526304 TCAGAAACTTCACCGTCCAG 57.474 50.000 0.00 0.00 0.00 3.86
7039 7611 3.138304 CAATCAGAAACTTCACCGTCCA 58.862 45.455 0.00 0.00 0.00 4.02
7040 7612 2.484264 CCAATCAGAAACTTCACCGTCC 59.516 50.000 0.00 0.00 0.00 4.79
7041 7613 2.484264 CCCAATCAGAAACTTCACCGTC 59.516 50.000 0.00 0.00 0.00 4.79
7042 7614 2.504367 CCCAATCAGAAACTTCACCGT 58.496 47.619 0.00 0.00 0.00 4.83
7043 7615 1.200020 GCCCAATCAGAAACTTCACCG 59.800 52.381 0.00 0.00 0.00 4.94
7044 7616 1.200020 CGCCCAATCAGAAACTTCACC 59.800 52.381 0.00 0.00 0.00 4.02
7045 7617 1.401539 GCGCCCAATCAGAAACTTCAC 60.402 52.381 0.00 0.00 0.00 3.18
7046 7618 0.881118 GCGCCCAATCAGAAACTTCA 59.119 50.000 0.00 0.00 0.00 3.02
7047 7619 0.171231 GGCGCCCAATCAGAAACTTC 59.829 55.000 18.11 0.00 0.00 3.01
7048 7620 1.250840 GGGCGCCCAATCAGAAACTT 61.251 55.000 40.73 0.00 35.81 2.66
7049 7621 1.678970 GGGCGCCCAATCAGAAACT 60.679 57.895 40.73 0.00 35.81 2.66
7050 7622 1.657751 GAGGGCGCCCAATCAGAAAC 61.658 60.000 45.13 20.19 38.92 2.78
7051 7623 1.378514 GAGGGCGCCCAATCAGAAA 60.379 57.895 45.13 0.00 38.92 2.52
7052 7624 2.272146 GAGGGCGCCCAATCAGAA 59.728 61.111 45.13 0.00 38.92 3.02
7053 7625 4.161295 CGAGGGCGCCCAATCAGA 62.161 66.667 45.13 0.00 38.92 3.27
7054 7626 3.680620 TTCGAGGGCGCCCAATCAG 62.681 63.158 45.13 29.19 38.92 2.90
7055 7627 3.711814 TTCGAGGGCGCCCAATCA 61.712 61.111 45.13 24.74 38.92 2.57
7056 7628 2.306255 TAGTTCGAGGGCGCCCAATC 62.306 60.000 45.13 33.04 38.92 2.67
7057 7629 1.696097 ATAGTTCGAGGGCGCCCAAT 61.696 55.000 45.13 28.48 38.92 3.16
7058 7630 1.044231 TATAGTTCGAGGGCGCCCAA 61.044 55.000 45.13 29.25 38.92 4.12
7059 7631 1.456145 TATAGTTCGAGGGCGCCCA 60.456 57.895 45.13 24.88 38.92 5.36
7060 7632 1.177256 TCTATAGTTCGAGGGCGCCC 61.177 60.000 39.29 39.29 37.46 6.13
7061 7633 0.889306 ATCTATAGTTCGAGGGCGCC 59.111 55.000 21.18 21.18 37.46 6.53
7062 7634 1.540267 TCATCTATAGTTCGAGGGCGC 59.460 52.381 0.00 0.00 37.46 6.53
7063 7635 3.566523 GTTCATCTATAGTTCGAGGGCG 58.433 50.000 0.00 0.00 39.35 6.13
7064 7636 3.252701 TCGTTCATCTATAGTTCGAGGGC 59.747 47.826 0.00 0.00 0.00 5.19
7065 7637 5.392165 GGATCGTTCATCTATAGTTCGAGGG 60.392 48.000 0.00 0.00 0.00 4.30
7066 7638 5.392165 GGGATCGTTCATCTATAGTTCGAGG 60.392 48.000 0.00 0.00 0.00 4.63
7067 7639 5.181433 TGGGATCGTTCATCTATAGTTCGAG 59.819 44.000 0.00 0.00 0.00 4.04
7068 7640 5.048921 GTGGGATCGTTCATCTATAGTTCGA 60.049 44.000 0.00 5.11 0.00 3.71
7069 7641 5.154932 GTGGGATCGTTCATCTATAGTTCG 58.845 45.833 0.00 0.09 0.00 3.95
7070 7642 5.048921 TCGTGGGATCGTTCATCTATAGTTC 60.049 44.000 0.00 0.00 0.00 3.01
7071 7643 4.825634 TCGTGGGATCGTTCATCTATAGTT 59.174 41.667 0.00 0.00 0.00 2.24
7072 7644 4.395625 TCGTGGGATCGTTCATCTATAGT 58.604 43.478 0.00 0.00 0.00 2.12
7073 7645 5.372547 TTCGTGGGATCGTTCATCTATAG 57.627 43.478 0.00 0.00 0.00 1.31
7074 7646 5.977489 ATTCGTGGGATCGTTCATCTATA 57.023 39.130 0.00 0.00 0.00 1.31
7075 7647 4.873746 ATTCGTGGGATCGTTCATCTAT 57.126 40.909 0.00 0.00 0.00 1.98
7076 7648 4.825634 ACTATTCGTGGGATCGTTCATCTA 59.174 41.667 0.00 0.00 0.00 1.98
7077 7649 3.637229 ACTATTCGTGGGATCGTTCATCT 59.363 43.478 0.00 0.00 0.00 2.90
7078 7650 3.978687 ACTATTCGTGGGATCGTTCATC 58.021 45.455 0.00 0.00 0.00 2.92
7079 7651 3.243771 GGACTATTCGTGGGATCGTTCAT 60.244 47.826 0.00 0.00 0.00 2.57
7080 7652 2.100252 GGACTATTCGTGGGATCGTTCA 59.900 50.000 0.00 0.00 0.00 3.18
7081 7653 2.545322 GGGACTATTCGTGGGATCGTTC 60.545 54.545 0.00 0.00 0.00 3.95
7082 7654 1.411612 GGGACTATTCGTGGGATCGTT 59.588 52.381 0.00 0.00 0.00 3.85
7083 7655 1.038280 GGGACTATTCGTGGGATCGT 58.962 55.000 0.00 0.00 0.00 3.73
7084 7656 1.269998 GAGGGACTATTCGTGGGATCG 59.730 57.143 0.00 0.00 41.55 3.69
7085 7657 1.269998 CGAGGGACTATTCGTGGGATC 59.730 57.143 0.00 0.00 41.55 3.36
7086 7658 1.133575 TCGAGGGACTATTCGTGGGAT 60.134 52.381 0.00 0.00 41.55 3.85
7087 7659 0.256752 TCGAGGGACTATTCGTGGGA 59.743 55.000 0.00 0.00 41.55 4.37
7088 7660 1.269998 GATCGAGGGACTATTCGTGGG 59.730 57.143 0.00 0.00 41.55 4.61
7089 7661 1.069159 CGATCGAGGGACTATTCGTGG 60.069 57.143 10.26 0.00 41.55 4.94
7090 7662 1.069159 CCGATCGAGGGACTATTCGTG 60.069 57.143 18.66 0.00 41.55 4.35
7091 7663 1.202734 TCCGATCGAGGGACTATTCGT 60.203 52.381 18.66 0.00 41.55 3.85
7092 7664 1.520494 TCCGATCGAGGGACTATTCG 58.480 55.000 18.66 0.00 41.55 3.34
7093 7665 2.229302 CCTTCCGATCGAGGGACTATTC 59.771 54.545 18.66 0.00 40.25 1.75
7094 7666 2.240279 CCTTCCGATCGAGGGACTATT 58.760 52.381 18.66 0.00 40.25 1.73
7095 7667 1.145325 ACCTTCCGATCGAGGGACTAT 59.855 52.381 22.66 3.11 40.25 2.12
7096 7668 0.549950 ACCTTCCGATCGAGGGACTA 59.450 55.000 22.66 0.00 40.25 2.59
7097 7669 0.752376 GACCTTCCGATCGAGGGACT 60.752 60.000 22.66 6.09 40.25 3.85
7098 7670 1.734748 GACCTTCCGATCGAGGGAC 59.265 63.158 22.66 14.68 40.25 4.46
7099 7671 1.822613 CGACCTTCCGATCGAGGGA 60.823 63.158 22.66 7.97 40.25 4.20
7100 7672 1.822613 TCGACCTTCCGATCGAGGG 60.823 63.158 22.66 19.05 42.18 4.30
7101 7673 3.823402 TCGACCTTCCGATCGAGG 58.177 61.111 18.66 18.63 42.18 4.63
7103 7675 0.179145 GCTTTCGACCTTCCGATCGA 60.179 55.000 18.66 0.00 45.17 3.59
7104 7676 0.457853 TGCTTTCGACCTTCCGATCG 60.458 55.000 8.51 8.51 38.45 3.69
7105 7677 1.000145 GTGCTTTCGACCTTCCGATC 59.000 55.000 0.00 0.00 38.45 3.69
7106 7678 0.736325 CGTGCTTTCGACCTTCCGAT 60.736 55.000 0.00 0.00 38.45 4.18
7107 7679 1.372499 CGTGCTTTCGACCTTCCGA 60.372 57.895 0.00 0.00 36.70 4.55
7108 7680 2.380410 CCGTGCTTTCGACCTTCCG 61.380 63.158 0.00 0.00 0.00 4.30
7109 7681 1.289800 GACCGTGCTTTCGACCTTCC 61.290 60.000 0.00 0.00 0.00 3.46
7110 7682 0.319641 AGACCGTGCTTTCGACCTTC 60.320 55.000 0.00 0.00 0.00 3.46
7111 7683 0.106149 AAGACCGTGCTTTCGACCTT 59.894 50.000 0.00 0.00 0.00 3.50
7112 7684 0.106149 AAAGACCGTGCTTTCGACCT 59.894 50.000 0.00 0.00 32.94 3.85
7113 7685 0.511653 GAAAGACCGTGCTTTCGACC 59.488 55.000 10.29 0.00 42.82 4.79
7118 7690 2.035576 ACTCGTAGAAAGACCGTGCTTT 59.964 45.455 0.02 0.02 40.59 3.51
7119 7691 1.612463 ACTCGTAGAAAGACCGTGCTT 59.388 47.619 0.00 0.00 34.09 3.91
7120 7692 1.245732 ACTCGTAGAAAGACCGTGCT 58.754 50.000 0.00 0.00 34.09 4.40
7121 7693 1.719780 CAACTCGTAGAAAGACCGTGC 59.280 52.381 0.00 0.00 34.09 5.34
7122 7694 1.719780 GCAACTCGTAGAAAGACCGTG 59.280 52.381 0.00 0.00 34.09 4.94
7123 7695 1.338973 TGCAACTCGTAGAAAGACCGT 59.661 47.619 0.00 0.00 34.09 4.83
7124 7696 2.060326 TGCAACTCGTAGAAAGACCG 57.940 50.000 0.00 0.00 34.09 4.79
7125 7697 2.157863 GCTTGCAACTCGTAGAAAGACC 59.842 50.000 0.00 0.00 34.09 3.85
7126 7698 2.800544 TGCTTGCAACTCGTAGAAAGAC 59.199 45.455 0.00 0.00 34.09 3.01
7127 7699 3.106242 TGCTTGCAACTCGTAGAAAGA 57.894 42.857 0.00 0.00 34.09 2.52
7128 7700 4.490959 CGTATGCTTGCAACTCGTAGAAAG 60.491 45.833 0.00 0.00 34.09 2.62
7129 7701 3.366724 CGTATGCTTGCAACTCGTAGAAA 59.633 43.478 0.00 0.00 34.09 2.52
7130 7702 2.921121 CGTATGCTTGCAACTCGTAGAA 59.079 45.455 0.00 0.00 34.09 2.10
7131 7703 2.526077 CGTATGCTTGCAACTCGTAGA 58.474 47.619 0.00 0.00 0.00 2.59
7132 7704 1.588404 CCGTATGCTTGCAACTCGTAG 59.412 52.381 0.00 0.00 0.00 3.51
7133 7705 1.067425 ACCGTATGCTTGCAACTCGTA 60.067 47.619 0.00 0.00 0.00 3.43
7134 7706 0.320421 ACCGTATGCTTGCAACTCGT 60.320 50.000 0.00 0.00 0.00 4.18
7135 7707 0.370273 GACCGTATGCTTGCAACTCG 59.630 55.000 0.00 5.14 0.00 4.18
7136 7708 1.726853 AGACCGTATGCTTGCAACTC 58.273 50.000 0.00 0.00 0.00 3.01
7137 7709 2.076863 GAAGACCGTATGCTTGCAACT 58.923 47.619 0.00 0.00 0.00 3.16
7138 7710 1.804151 TGAAGACCGTATGCTTGCAAC 59.196 47.619 0.00 0.00 0.00 4.17
7139 7711 1.804151 GTGAAGACCGTATGCTTGCAA 59.196 47.619 0.00 0.00 0.00 4.08
7140 7712 1.438651 GTGAAGACCGTATGCTTGCA 58.561 50.000 0.00 0.00 0.00 4.08
7141 7713 0.370273 CGTGAAGACCGTATGCTTGC 59.630 55.000 0.00 0.00 0.00 4.01
7142 7714 1.990799 TCGTGAAGACCGTATGCTTG 58.009 50.000 0.00 0.00 0.00 4.01
7143 7715 2.481449 GGATCGTGAAGACCGTATGCTT 60.481 50.000 0.00 0.00 0.00 3.91
7144 7716 1.067212 GGATCGTGAAGACCGTATGCT 59.933 52.381 0.00 0.00 0.00 3.79
7145 7717 1.488527 GGATCGTGAAGACCGTATGC 58.511 55.000 0.00 0.00 0.00 3.14
7146 7718 1.599667 CCGGATCGTGAAGACCGTATG 60.600 57.143 0.00 0.00 39.90 2.39
7147 7719 0.666913 CCGGATCGTGAAGACCGTAT 59.333 55.000 0.00 0.00 39.90 3.06
7148 7720 1.996786 GCCGGATCGTGAAGACCGTA 61.997 60.000 5.05 0.00 39.90 4.02
7149 7721 2.882876 CCGGATCGTGAAGACCGT 59.117 61.111 0.00 0.00 39.90 4.83
7150 7722 2.582498 GCCGGATCGTGAAGACCG 60.582 66.667 5.05 0.00 40.63 4.79
7151 7723 1.519455 CTGCCGGATCGTGAAGACC 60.519 63.158 5.05 0.00 0.00 3.85
7152 7724 0.454600 TACTGCCGGATCGTGAAGAC 59.545 55.000 5.05 0.00 0.00 3.01
7153 7725 0.454600 GTACTGCCGGATCGTGAAGA 59.545 55.000 5.05 0.00 0.00 2.87
7154 7726 0.456221 AGTACTGCCGGATCGTGAAG 59.544 55.000 5.05 0.00 0.00 3.02
7155 7727 0.892755 AAGTACTGCCGGATCGTGAA 59.107 50.000 5.05 0.00 0.00 3.18
7156 7728 0.454600 GAAGTACTGCCGGATCGTGA 59.545 55.000 5.05 0.00 0.00 4.35
7157 7729 0.172578 TGAAGTACTGCCGGATCGTG 59.827 55.000 5.05 0.00 0.00 4.35
7158 7730 0.172803 GTGAAGTACTGCCGGATCGT 59.827 55.000 5.05 0.00 0.00 3.73
7159 7731 0.527817 GGTGAAGTACTGCCGGATCG 60.528 60.000 5.05 0.00 0.00 3.69
7160 7732 0.527817 CGGTGAAGTACTGCCGGATC 60.528 60.000 19.81 4.83 40.45 3.36
7161 7733 1.515954 CGGTGAAGTACTGCCGGAT 59.484 57.895 19.81 0.00 40.45 4.18
7162 7734 2.967397 CGGTGAAGTACTGCCGGA 59.033 61.111 19.81 0.00 40.45 5.14
7165 7737 0.389948 CTGGACGGTGAAGTACTGCC 60.390 60.000 0.00 0.00 39.39 4.85
7166 7738 0.601558 TCTGGACGGTGAAGTACTGC 59.398 55.000 0.00 0.00 39.39 4.40
7167 7739 1.402984 GCTCTGGACGGTGAAGTACTG 60.403 57.143 0.00 0.00 41.64 2.74
7168 7740 0.889306 GCTCTGGACGGTGAAGTACT 59.111 55.000 0.00 0.00 0.00 2.73
7169 7741 0.889306 AGCTCTGGACGGTGAAGTAC 59.111 55.000 0.00 0.00 0.00 2.73
7170 7742 1.272490 CAAGCTCTGGACGGTGAAGTA 59.728 52.381 0.00 0.00 0.00 2.24
7171 7743 0.034059 CAAGCTCTGGACGGTGAAGT 59.966 55.000 0.00 0.00 0.00 3.01
7172 7744 0.034059 ACAAGCTCTGGACGGTGAAG 59.966 55.000 0.00 0.00 0.00 3.02
7173 7745 1.272490 CTACAAGCTCTGGACGGTGAA 59.728 52.381 0.00 0.00 0.00 3.18
7174 7746 0.888619 CTACAAGCTCTGGACGGTGA 59.111 55.000 0.00 0.00 0.00 4.02
7175 7747 0.603569 ACTACAAGCTCTGGACGGTG 59.396 55.000 0.00 0.00 0.00 4.94
7176 7748 0.889306 GACTACAAGCTCTGGACGGT 59.111 55.000 0.00 0.00 0.00 4.83
7177 7749 0.179161 CGACTACAAGCTCTGGACGG 60.179 60.000 0.00 0.00 0.00 4.79
7178 7750 0.798771 GCGACTACAAGCTCTGGACG 60.799 60.000 0.00 0.00 0.00 4.79
7179 7751 0.458716 GGCGACTACAAGCTCTGGAC 60.459 60.000 0.00 0.00 0.00 4.02
7180 7752 1.890894 GGCGACTACAAGCTCTGGA 59.109 57.895 0.00 0.00 0.00 3.86
7181 7753 1.517257 CGGCGACTACAAGCTCTGG 60.517 63.158 0.00 0.00 0.00 3.86
7182 7754 1.517257 CCGGCGACTACAAGCTCTG 60.517 63.158 9.30 0.00 0.00 3.35
7183 7755 1.658686 CTCCGGCGACTACAAGCTCT 61.659 60.000 9.30 0.00 0.00 4.09
7184 7756 1.226717 CTCCGGCGACTACAAGCTC 60.227 63.158 9.30 0.00 0.00 4.09
7185 7757 1.248785 TTCTCCGGCGACTACAAGCT 61.249 55.000 9.30 0.00 0.00 3.74
7186 7758 0.179108 ATTCTCCGGCGACTACAAGC 60.179 55.000 9.30 0.00 0.00 4.01
7187 7759 2.295253 AATTCTCCGGCGACTACAAG 57.705 50.000 9.30 0.00 0.00 3.16
7188 7760 3.018856 TCTAATTCTCCGGCGACTACAA 58.981 45.455 9.30 0.00 0.00 2.41
7189 7761 2.617308 CTCTAATTCTCCGGCGACTACA 59.383 50.000 9.30 0.00 0.00 2.74
7190 7762 2.877168 TCTCTAATTCTCCGGCGACTAC 59.123 50.000 9.30 0.00 0.00 2.73
7191 7763 3.139850 CTCTCTAATTCTCCGGCGACTA 58.860 50.000 9.30 0.00 0.00 2.59
7192 7764 1.950909 CTCTCTAATTCTCCGGCGACT 59.049 52.381 9.30 0.00 0.00 4.18
7193 7765 1.001158 CCTCTCTAATTCTCCGGCGAC 60.001 57.143 9.30 0.00 0.00 5.19
7194 7766 1.133884 TCCTCTCTAATTCTCCGGCGA 60.134 52.381 9.30 0.00 0.00 5.54
7195 7767 1.268352 CTCCTCTCTAATTCTCCGGCG 59.732 57.143 0.00 0.00 0.00 6.46
7196 7768 2.588620 TCTCCTCTCTAATTCTCCGGC 58.411 52.381 0.00 0.00 0.00 6.13
7197 7769 6.242396 TCTAATCTCCTCTCTAATTCTCCGG 58.758 44.000 0.00 0.00 0.00 5.14
7198 7770 7.308951 GGTTCTAATCTCCTCTCTAATTCTCCG 60.309 44.444 0.00 0.00 0.00 4.63
7199 7771 7.507616 TGGTTCTAATCTCCTCTCTAATTCTCC 59.492 40.741 0.00 0.00 0.00 3.71
7200 7772 8.357402 GTGGTTCTAATCTCCTCTCTAATTCTC 58.643 40.741 0.00 0.00 0.00 2.87
7201 7773 7.841729 TGTGGTTCTAATCTCCTCTCTAATTCT 59.158 37.037 0.00 0.00 0.00 2.40
7202 7774 7.923878 GTGTGGTTCTAATCTCCTCTCTAATTC 59.076 40.741 0.00 0.00 0.00 2.17
7203 7775 7.621683 AGTGTGGTTCTAATCTCCTCTCTAATT 59.378 37.037 0.00 0.00 0.00 1.40
7204 7776 7.069331 CAGTGTGGTTCTAATCTCCTCTCTAAT 59.931 40.741 0.00 0.00 0.00 1.73
7205 7777 6.378564 CAGTGTGGTTCTAATCTCCTCTCTAA 59.621 42.308 0.00 0.00 0.00 2.10
7206 7778 5.888724 CAGTGTGGTTCTAATCTCCTCTCTA 59.111 44.000 0.00 0.00 0.00 2.43
7207 7779 4.709397 CAGTGTGGTTCTAATCTCCTCTCT 59.291 45.833 0.00 0.00 0.00 3.10
7208 7780 4.142049 CCAGTGTGGTTCTAATCTCCTCTC 60.142 50.000 0.00 0.00 31.35 3.20
7209 7781 3.772025 CCAGTGTGGTTCTAATCTCCTCT 59.228 47.826 0.00 0.00 31.35 3.69
7210 7782 3.769844 TCCAGTGTGGTTCTAATCTCCTC 59.230 47.826 0.00 0.00 39.03 3.71
7211 7783 3.515901 GTCCAGTGTGGTTCTAATCTCCT 59.484 47.826 0.00 0.00 39.03 3.69
7212 7784 3.515901 AGTCCAGTGTGGTTCTAATCTCC 59.484 47.826 0.00 0.00 39.03 3.71
7213 7785 4.810191 AGTCCAGTGTGGTTCTAATCTC 57.190 45.455 0.00 0.00 39.03 2.75
7214 7786 4.841246 AGAAGTCCAGTGTGGTTCTAATCT 59.159 41.667 0.00 0.00 39.03 2.40
7215 7787 5.153950 AGAAGTCCAGTGTGGTTCTAATC 57.846 43.478 0.00 0.00 39.03 1.75
7216 7788 6.681729 TTAGAAGTCCAGTGTGGTTCTAAT 57.318 37.500 11.82 1.67 38.80 1.73
7217 7789 6.681729 ATTAGAAGTCCAGTGTGGTTCTAA 57.318 37.500 15.67 15.67 43.30 2.10
7218 7790 6.681729 AATTAGAAGTCCAGTGTGGTTCTA 57.318 37.500 3.16 3.16 39.03 2.10
7219 7791 5.568620 AATTAGAAGTCCAGTGTGGTTCT 57.431 39.130 4.70 4.70 39.03 3.01
7220 7792 7.103641 TCATAATTAGAAGTCCAGTGTGGTTC 58.896 38.462 0.00 0.00 39.03 3.62
7221 7793 7.016153 TCATAATTAGAAGTCCAGTGTGGTT 57.984 36.000 0.00 0.00 39.03 3.67
7222 7794 6.620877 TCATAATTAGAAGTCCAGTGTGGT 57.379 37.500 0.00 0.00 39.03 4.16
7223 7795 7.275183 TCATCATAATTAGAAGTCCAGTGTGG 58.725 38.462 0.00 0.00 39.43 4.17
7224 7796 8.899427 ATCATCATAATTAGAAGTCCAGTGTG 57.101 34.615 0.00 0.00 0.00 3.82
7260 7832 9.829507 CCTAGTTGATCAATTTGAGTTAGATCT 57.170 33.333 12.12 0.00 36.82 2.75
7261 7833 9.823647 TCCTAGTTGATCAATTTGAGTTAGATC 57.176 33.333 12.12 0.00 36.51 2.75
7263 7835 9.823647 GATCCTAGTTGATCAATTTGAGTTAGA 57.176 33.333 12.12 1.68 40.71 2.10
7264 7836 9.605275 TGATCCTAGTTGATCAATTTGAGTTAG 57.395 33.333 12.12 0.51 46.08 2.34
7278 7850 9.922477 TCTCTATTTCTAGTTGATCCTAGTTGA 57.078 33.333 6.07 0.00 36.59 3.18
7281 7853 9.930158 AGTTCTCTATTTCTAGTTGATCCTAGT 57.070 33.333 6.07 0.00 36.59 2.57
7290 7862 8.856103 GCATCCTCTAGTTCTCTATTTCTAGTT 58.144 37.037 0.00 0.00 33.72 2.24
7291 7863 8.224720 AGCATCCTCTAGTTCTCTATTTCTAGT 58.775 37.037 0.00 0.00 33.72 2.57
7292 7864 8.635765 AGCATCCTCTAGTTCTCTATTTCTAG 57.364 38.462 0.00 0.00 33.41 2.43
7293 7865 8.630054 GAGCATCCTCTAGTTCTCTATTTCTA 57.370 38.462 0.00 0.00 35.16 2.10
7294 7866 7.524717 GAGCATCCTCTAGTTCTCTATTTCT 57.475 40.000 0.00 0.00 35.16 2.52
7309 7881 8.916757 TTGATACACAAGTTTTGGAGCATCCTC 61.917 40.741 0.00 0.00 44.18 3.71
7310 7882 7.196532 TTGATACACAAGTTTTGGAGCATCCT 61.197 38.462 0.00 0.00 44.18 3.24
7311 7883 5.048083 TTGATACACAAGTTTTGGAGCATCC 60.048 40.000 0.00 0.00 44.14 3.51
7312 7884 5.627499 TGATACACAAGTTTTGGAGCATC 57.373 39.130 0.00 0.00 34.12 3.91
7313 7885 6.403866 TTTGATACACAAGTTTTGGAGCAT 57.596 33.333 0.00 0.00 39.77 3.79
7314 7886 5.843673 TTTGATACACAAGTTTTGGAGCA 57.156 34.783 0.00 0.00 39.77 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.