AutoCloner

Multiple sequence alignment - TraesCS5A01G057800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5A01G057800	chr5A	100.000	2540	0	0	1	2540	55272202	55274741	0.000000e+00	4691
1	TraesCS5A01G057800	chr5A	99.532	641	3	0	1	641	342345824	342345184	0.000000e+00	1168
2	TraesCS5A01G057800	chr5A	94.727	531	27	1	1059	1589	592035792	592036321	0.000000e+00	824
3	TraesCS5A01G057800	chr5A	93.447	412	14	6	660	1058	592034871	592035282	1.300000e-167	599
4	TraesCS5A01G057800	chr6B	98.837	1204	12	2	640	1843	650651341	650652542	0.000000e+00	2145
5	TraesCS5A01G057800	chr6B	99.689	643	2	0	1	643	85717162	85716520	0.000000e+00	1177
6	TraesCS5A01G057800	chr6B	99.377	642	4	0	1	642	205258112	205258753	0.000000e+00	1164
7	TraesCS5A01G057800	chr2A	97.848	1208	12	2	640	1847	469819132	469820325	0.000000e+00	2074
8	TraesCS5A01G057800	chr2A	99.687	639	2	0	1	639	655885172	655885810	0.000000e+00	1170
9	TraesCS5A01G057800	chrUn	99.378	643	4	0	1	643	77520562	77521204	0.000000e+00	1166
10	TraesCS5A01G057800	chr2B	99.531	639	3	0	1	639	31447427	31446789	0.000000e+00	1164
11	TraesCS5A01G057800	chr3A	99.375	640	4	0	1	640	739333771	739333132	0.000000e+00	1160
12	TraesCS5A01G057800	chr3A	92.005	788	39	7	1059	1846	497759452	497758689	0.000000e+00	1085
13	TraesCS5A01G057800	chr3A	92.913	254	7	4	664	906	497759817	497759564	2.400000e-95	359
14	TraesCS5A01G057800	chr6A	99.374	639	4	0	1	639	465322725	465322087	0.000000e+00	1158
15	TraesCS5A01G057800	chr6A	95.175	228	9	2	1621	1847	66266834	66266608	2.400000e-95	359
16	TraesCS5A01G057800	chr6A	94.393	214	10	2	1635	1847	66269447	66269659	6.780000e-86	327
17	TraesCS5A01G057800	chr4A	97.898	666	10	4	1	662	508013189	508013854	0.000000e+00	1149
18	TraesCS5A01G057800	chr5D	96.610	531	17	1	1059	1589	472522210	472522739	0.000000e+00	880
19	TraesCS5A01G057800	chr5D	97.658	427	7	1	2010	2436	66000120	66000543	0.000000e+00	730
20	TraesCS5A01G057800	chr5D	84.725	491	74	1	1063	1553	472628007	472628496	8.170000e-135	490
21	TraesCS5A01G057800	chr5D	86.310	336	22	10	660	971	472521238	472521573	6.730000e-91	344
22	TraesCS5A01G057800	chr5D	91.593	226	16	3	1623	1847	387823701	387823924	2.450000e-80	309
23	TraesCS5A01G057800	chr5D	91.111	225	18	2	1630	1853	532658157	532658380	1.140000e-78	303
24	TraesCS5A01G057800	chr5D	90.351	228	20	2	1621	1847	387815305	387815079	5.310000e-77	298
25	TraesCS5A01G057800	chr5D	86.916	107	14	0	658	764	472569369	472569475	1.230000e-23	121
26	TraesCS5A01G057800	chr5D	94.595	74	3	1	2465	2538	66000543	66000615	2.070000e-21	113
27	TraesCS5A01G057800	chr5D	89.362	94	3	4	969	1060	472521599	472521687	7.430000e-21	111
28	TraesCS5A01G057800	chr5B	95.539	538	23	1	1063	1600	579521649	579522185	0.000000e+00	859
29	TraesCS5A01G057800	chr5B	88.846	520	22	15	1875	2371	65092380	65091874	7.770000e-170	606
30	TraesCS5A01G057800	chr5B	92.060	403	21	2	640	1038	579520955	579521350	7.940000e-155	556
31	TraesCS5A01G057800	chr5B	93.182	220	13	2	1635	1853	663520094	663520312	3.150000e-84	322
32	TraesCS5A01G057800	chr5B	94.215	121	7	0	2358	2478	65091622	65091502	4.320000e-43	185
33	TraesCS5A01G057800	chr5B	86.486	111	15	0	654	764	579591768	579591878	3.430000e-24	122
34	TraesCS5A01G057800	chr5B	95.775	71	3	0	2470	2540	65079851	65079781	5.740000e-22	115
35	TraesCS5A01G057800	chr5B	92.208	77	6	0	658	734	579808258	579808334	2.670000e-20	110
36	TraesCS5A01G057800	chr3B	96.296	216	6	2	1634	1848	42176067	42176281	1.120000e-93	353

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5A01G057800	chr5A	55272202	55274741	2539	False	4691.0	4691	100.000000	1	2540	1	chr5A.!!$F1	2539
1	TraesCS5A01G057800	chr5A	342345184	342345824	640	True	1168.0	1168	99.532000	1	641	1	chr5A.!!$R1	640
2	TraesCS5A01G057800	chr5A	592034871	592036321	1450	False	711.5	824	94.087000	660	1589	2	chr5A.!!$F2	929
3	TraesCS5A01G057800	chr6B	650651341	650652542	1201	False	2145.0	2145	98.837000	640	1843	1	chr6B.!!$F2	1203
4	TraesCS5A01G057800	chr6B	85716520	85717162	642	True	1177.0	1177	99.689000	1	643	1	chr6B.!!$R1	642
5	TraesCS5A01G057800	chr6B	205258112	205258753	641	False	1164.0	1164	99.377000	1	642	1	chr6B.!!$F1	641
6	TraesCS5A01G057800	chr2A	469819132	469820325	1193	False	2074.0	2074	97.848000	640	1847	1	chr2A.!!$F1	1207
7	TraesCS5A01G057800	chr2A	655885172	655885810	638	False	1170.0	1170	99.687000	1	639	1	chr2A.!!$F2	638
8	TraesCS5A01G057800	chrUn	77520562	77521204	642	False	1166.0	1166	99.378000	1	643	1	chrUn.!!$F1	642
9	TraesCS5A01G057800	chr2B	31446789	31447427	638	True	1164.0	1164	99.531000	1	639	1	chr2B.!!$R1	638
10	TraesCS5A01G057800	chr3A	739333132	739333771	639	True	1160.0	1160	99.375000	1	640	1	chr3A.!!$R1	639
11	TraesCS5A01G057800	chr3A	497758689	497759817	1128	True	722.0	1085	92.459000	664	1846	2	chr3A.!!$R2	1182
12	TraesCS5A01G057800	chr6A	465322087	465322725	638	True	1158.0	1158	99.374000	1	639	1	chr6A.!!$R2	638
13	TraesCS5A01G057800	chr4A	508013189	508013854	665	False	1149.0	1149	97.898000	1	662	1	chr4A.!!$F1	661
14	TraesCS5A01G057800	chr5D	472521238	472522739	1501	False	445.0	880	90.760667	660	1589	3	chr5D.!!$F6	929
15	TraesCS5A01G057800	chr5B	579520955	579522185	1230	False	707.5	859	93.799500	640	1600	2	chr5B.!!$F4	960
16	TraesCS5A01G057800	chr5B	65091502	65092380	878	True	395.5	606	91.530500	1875	2478	2	chr5B.!!$R2	603

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
124	125	0.46729	TGGCCCTAATTTGATCGCCC	60.467	55.0	0.0	0.0	35.46	6.13	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1851	2446	0.250901	ACCGTGCAAGCCAGATTCTT	60.251	50.0	0.0	0.0	0.0	2.52	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
124	125	0.467290	TGGCCCTAATTTGATCGCCC	60.467	55.000	0.00	0.00	35.46	6.13
526	527	4.080526	GCTAAGATTGAGGGAGGGTGTTAA	60.081	45.833	0.00	0.00	0.00	2.01
656	657	4.779733	AGGATGGACGAGGGCGGT	62.780	66.667	0.00	0.00	43.17	5.68
800	810	1.702401	TGGTTGCTTCTCACATACCCA	59.298	47.619	0.00	0.00	0.00	4.51
891	914	3.119459	TCAGATAGCAACAACTCGACCTC	60.119	47.826	0.00	0.00	0.00	3.85
1626	2221	1.985895	AGTTTCCAGTAGAAGTGGGGG	59.014	52.381	1.05	0.00	39.21	5.40
1731	2326	0.390340	GCGAGCTGTGATTGGTCTGA	60.390	55.000	0.00	0.00	0.00	3.27
1825	2420	1.136828	ACACTGGGTGCAAGTTAGGA	58.863	50.000	0.00	0.00	36.98	2.94
1868	2463	2.712057	AAAAGAATCTGGCTTGCACG	57.288	45.000	0.00	0.00	0.00	5.34
1869	2464	0.883833	AAAGAATCTGGCTTGCACGG	59.116	50.000	0.00	0.00	0.00	4.94
1870	2465	0.250901	AAGAATCTGGCTTGCACGGT	60.251	50.000	0.00	0.00	0.00	4.83
1871	2466	0.957395	AGAATCTGGCTTGCACGGTG	60.957	55.000	3.15	3.15	0.00	4.94
1872	2467	0.955428	GAATCTGGCTTGCACGGTGA	60.955	55.000	13.29	0.00	0.00	4.02
1873	2468	1.237285	AATCTGGCTTGCACGGTGAC	61.237	55.000	13.29	3.96	0.00	3.67
1909	2504	3.212377	CCAACCAATGGGAGGGATG	57.788	57.895	3.55	0.00	46.27	3.51
1910	2505	0.397535	CCAACCAATGGGAGGGATGG	60.398	60.000	3.55	0.00	46.27	3.51
1911	2506	0.397535	CAACCAATGGGAGGGATGGG	60.398	60.000	3.55	0.00	37.26	4.00
1995	2604	2.425592	CCCCACACGCAACAGAGA	59.574	61.111	0.00	0.00	0.00	3.10
2053	2671	4.400961	GCAGCAGCCCGAGGAAGT	62.401	66.667	0.00	0.00	33.58	3.01
2110	2728	1.804326	GGCTGCAGGTACGTACGTG	60.804	63.158	33.26	33.26	42.99	4.49
2157	2775	3.567473	GCAACCGAGCCAGTCTTC	58.433	61.111	0.00	0.00	0.00	2.87
2158	2776	1.004440	GCAACCGAGCCAGTCTTCT	60.004	57.895	0.00	0.00	0.00	2.85
2167	2785	1.427592	GCCAGTCTTCTGATCTGCGC	61.428	60.000	0.00	0.00	43.76	6.09
2236	2854	1.358877	TCGATTCGTGCACCAGATTG	58.641	50.000	12.15	6.93	0.00	2.67
2249	2867	3.058293	CACCAGATTGTTTATGTGTGCGT	60.058	43.478	0.00	0.00	0.00	5.24
2250	2868	4.153296	CACCAGATTGTTTATGTGTGCGTA	59.847	41.667	0.00	0.00	0.00	4.42
2251	2869	4.941263	ACCAGATTGTTTATGTGTGCGTAT	59.059	37.500	0.00	0.00	0.00	3.06
2253	2871	5.265477	CAGATTGTTTATGTGTGCGTATGG	58.735	41.667	0.00	0.00	0.00	2.74
2254	2872	5.064579	CAGATTGTTTATGTGTGCGTATGGA	59.935	40.000	0.00	0.00	0.00	3.41
2255	2873	5.822519	AGATTGTTTATGTGTGCGTATGGAT	59.177	36.000	0.00	0.00	0.00	3.41
2256	2874	5.888691	TTGTTTATGTGTGCGTATGGATT	57.111	34.783	0.00	0.00	0.00	3.01
2257	2875	5.478233	TGTTTATGTGTGCGTATGGATTC	57.522	39.130	0.00	0.00	0.00	2.52
2294	2912	0.889994	TGTTTGCATCACCATCTGCC	59.110	50.000	0.00	0.00	37.59	4.85
2324	2942	0.678950	TCTGCACTGATCCGACACAA	59.321	50.000	0.00	0.00	0.00	3.33
2343	2961	1.382522	AGCATGTCATTTAGGCCGTG	58.617	50.000	0.00	0.00	0.00	4.94
2393	3276	1.226831	CCGTGGTGGTTTTGTGTGC	60.227	57.895	0.00	0.00	0.00	4.57
2484	3367	4.157958	CAGCGGCAAAGCGCTCTC	62.158	66.667	12.06	2.17	43.00	3.20
2485	3368	4.385405	AGCGGCAAAGCGCTCTCT	62.385	61.111	12.06	0.00	43.00	3.10
2486	3369	3.426568	GCGGCAAAGCGCTCTCTT	61.427	61.111	12.06	0.00	41.91	2.85
2487	3370	2.781300	CGGCAAAGCGCTCTCTTC	59.219	61.111	12.06	0.00	41.91	2.87
2488	3371	2.029288	CGGCAAAGCGCTCTCTTCA	61.029	57.895	12.06	0.00	41.91	3.02
2489	3372	1.792941	GGCAAAGCGCTCTCTTCAG	59.207	57.895	12.06	0.00	41.91	3.02
2490	3373	1.134281	GCAAAGCGCTCTCTTCAGC	59.866	57.895	12.06	3.52	37.77	4.26
2491	3374	1.297456	GCAAAGCGCTCTCTTCAGCT	61.297	55.000	12.06	0.00	42.35	4.24
2493	3376	2.838286	AAGCGCTCTCTTCAGCTTG	58.162	52.632	12.06	0.00	46.64	4.01
2494	3377	0.673022	AAGCGCTCTCTTCAGCTTGG	60.673	55.000	12.06	0.00	46.64	3.61
2495	3378	2.748843	GCGCTCTCTTCAGCTTGGC	61.749	63.158	0.00	0.00	37.25	4.52
2496	3379	1.375140	CGCTCTCTTCAGCTTGGCA	60.375	57.895	0.00	0.00	37.25	4.92
2497	3380	1.360194	CGCTCTCTTCAGCTTGGCAG	61.360	60.000	0.00	0.00	37.25	4.85
2498	3381	1.025647	GCTCTCTTCAGCTTGGCAGG	61.026	60.000	0.00	0.00	36.38	4.85
2499	3382	0.612229	CTCTCTTCAGCTTGGCAGGA	59.388	55.000	0.00	0.00	0.00	3.86
2500	3383	0.612229	TCTCTTCAGCTTGGCAGGAG	59.388	55.000	0.00	0.00	0.00	3.69
2501	3384	0.612229	CTCTTCAGCTTGGCAGGAGA	59.388	55.000	0.00	0.00	0.00	3.71
2502	3385	1.209990	CTCTTCAGCTTGGCAGGAGAT	59.790	52.381	0.00	0.00	0.00	2.75
2503	3386	1.065636	TCTTCAGCTTGGCAGGAGATG	60.066	52.381	0.00	0.00	32.04	2.90
2512	3395	2.887568	CAGGAGATGCCACGACGC	60.888	66.667	0.00	0.00	40.02	5.19
2513	3396	3.071206	AGGAGATGCCACGACGCT	61.071	61.111	0.00	0.00	40.02	5.07
2514	3397	2.583593	GGAGATGCCACGACGCTC	60.584	66.667	0.00	0.00	36.34	5.03
2515	3398	2.583593	GAGATGCCACGACGCTCC	60.584	66.667	0.00	0.00	0.00	4.70
2516	3399	3.069980	GAGATGCCACGACGCTCCT	62.070	63.158	0.00	0.00	0.00	3.69
2517	3400	2.583593	GATGCCACGACGCTCCTC	60.584	66.667	0.00	0.00	0.00	3.71
2518	3401	3.069980	GATGCCACGACGCTCCTCT	62.070	63.158	0.00	0.00	0.00	3.69
2519	3402	2.564553	GATGCCACGACGCTCCTCTT	62.565	60.000	0.00	0.00	0.00	2.85
2520	3403	2.811317	GCCACGACGCTCCTCTTG	60.811	66.667	0.00	0.00	0.00	3.02
2521	3404	2.125912	CCACGACGCTCCTCTTGG	60.126	66.667	0.00	0.00	0.00	3.61
2522	3405	2.651361	CACGACGCTCCTCTTGGT	59.349	61.111	0.00	0.00	34.23	3.67
2523	3406	1.734477	CACGACGCTCCTCTTGGTG	60.734	63.158	0.00	0.00	34.23	4.17
2524	3407	2.201022	ACGACGCTCCTCTTGGTGT	61.201	57.895	0.00	0.00	34.23	4.16
2525	3408	0.892358	ACGACGCTCCTCTTGGTGTA	60.892	55.000	0.00	0.00	34.23	2.90
2526	3409	0.456312	CGACGCTCCTCTTGGTGTAC	60.456	60.000	0.00	0.00	34.23	2.90
2527	3410	0.456312	GACGCTCCTCTTGGTGTACG	60.456	60.000	0.00	0.00	34.23	3.67
2528	3411	1.805945	CGCTCCTCTTGGTGTACGC	60.806	63.158	0.00	0.00	34.23	4.42
2529	3412	1.805945	GCTCCTCTTGGTGTACGCG	60.806	63.158	3.53	3.53	34.23	6.01
2530	3413	1.805945	CTCCTCTTGGTGTACGCGC	60.806	63.158	5.73	0.00	34.23	6.86
2531	3414	2.813908	CCTCTTGGTGTACGCGCC	60.814	66.667	5.73	0.00	45.23	6.53
2537	3420	4.188702	GGTGTACGCGCCAATGTA	57.811	55.556	5.73	0.00	44.43	2.29
2538	3421	1.711500	GGTGTACGCGCCAATGTAC	59.289	57.895	5.73	14.15	44.43	2.90
2539	3422	1.342473	GTGTACGCGCCAATGTACG	59.658	57.895	5.73	0.00	42.99	3.67

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
124	125	1.738099	CCTGTTTCCGAGCACTCCG	60.738	63.158	0.00	0.00	0.00	4.63
800	810	7.103641	TGAAGAAACTGACAGTTGAAGTACTT	58.896	34.615	21.24	8.13	38.66	2.24
891	914	5.784177	AGTACTGGACTAACACAATGACTG	58.216	41.667	0.00	0.00	36.27	3.51
1367	1961	3.618750	GAACCACCCCGACCGTCA	61.619	66.667	0.00	0.00	0.00	4.35
1626	2221	2.097466	CCAATTATCAACCCGCAGTCAC	59.903	50.000	0.00	0.00	0.00	3.67
1825	2420	3.248888	GAGGTAATAGCACCCCAGGTAT	58.751	50.000	0.00	0.00	39.62	2.73
1848	2443	2.288395	CCGTGCAAGCCAGATTCTTTTT	60.288	45.455	0.00	0.00	0.00	1.94
1849	2444	1.270550	CCGTGCAAGCCAGATTCTTTT	59.729	47.619	0.00	0.00	0.00	2.27
1850	2445	0.883833	CCGTGCAAGCCAGATTCTTT	59.116	50.000	0.00	0.00	0.00	2.52
1851	2446	0.250901	ACCGTGCAAGCCAGATTCTT	60.251	50.000	0.00	0.00	0.00	2.52
1852	2447	0.957395	CACCGTGCAAGCCAGATTCT	60.957	55.000	0.00	0.00	0.00	2.40
1853	2448	0.955428	TCACCGTGCAAGCCAGATTC	60.955	55.000	0.00	0.00	0.00	2.52
1854	2449	1.073025	TCACCGTGCAAGCCAGATT	59.927	52.632	0.00	0.00	0.00	2.40
1855	2450	1.672356	GTCACCGTGCAAGCCAGAT	60.672	57.895	0.00	0.00	0.00	2.90
1856	2451	2.280797	GTCACCGTGCAAGCCAGA	60.281	61.111	0.00	0.00	0.00	3.86
1857	2452	3.357079	GGTCACCGTGCAAGCCAG	61.357	66.667	0.00	0.00	0.00	4.85
1923	2518	4.731612	CGAGCCAGTCACTGCGCT	62.732	66.667	17.69	17.69	39.42	5.92
1929	2524	1.882989	AAGAGAGGCGAGCCAGTCAC	61.883	60.000	17.18	4.92	38.92	3.67
1932	2527	2.355193	GGAAGAGAGGCGAGCCAGT	61.355	63.158	17.18	2.16	38.92	4.00
1980	2575	2.943345	GCGTCTCTGTTGCGTGTGG	61.943	63.158	0.00	0.00	0.00	4.17
1990	2599	1.358402	CCCGAGATCTGCGTCTCTG	59.642	63.158	0.00	5.43	41.95	3.35
2152	2770	0.248661	TAGCGCGCAGATCAGAAGAC	60.249	55.000	35.10	0.00	0.00	3.01
2157	2775	2.584065	GCACTAGCGCGCAGATCAG	61.584	63.158	35.10	22.05	0.00	2.90
2158	2776	2.583319	GCACTAGCGCGCAGATCA	60.583	61.111	35.10	11.43	0.00	2.92
2236	2854	5.734855	AGAATCCATACGCACACATAAAC	57.265	39.130	0.00	0.00	0.00	2.01
2249	2867	4.529769	AGGCGAGATGATGAAGAATCCATA	59.470	41.667	0.00	0.00	34.00	2.74
2250	2868	3.327172	AGGCGAGATGATGAAGAATCCAT	59.673	43.478	0.00	0.00	34.00	3.41
2251	2869	2.702478	AGGCGAGATGATGAAGAATCCA	59.298	45.455	0.00	0.00	34.00	3.41
2253	2871	2.479656	GCAGGCGAGATGATGAAGAATC	59.520	50.000	0.00	0.00	35.67	2.52
2254	2872	2.104451	AGCAGGCGAGATGATGAAGAAT	59.896	45.455	0.00	0.00	0.00	2.40
2255	2873	1.483827	AGCAGGCGAGATGATGAAGAA	59.516	47.619	0.00	0.00	0.00	2.52
2256	2874	1.117994	AGCAGGCGAGATGATGAAGA	58.882	50.000	0.00	0.00	0.00	2.87
2257	2875	1.218763	CAGCAGGCGAGATGATGAAG	58.781	55.000	0.00	0.00	36.15	3.02
2287	2905	4.340097	TGCAGAAATAAAGATGGGCAGATG	59.660	41.667	0.00	0.00	0.00	2.90
2294	2912	5.277683	CGGATCAGTGCAGAAATAAAGATGG	60.278	44.000	0.00	0.00	0.00	3.51
2324	2942	1.382522	CACGGCCTAAATGACATGCT	58.617	50.000	0.00	0.00	0.00	3.79
2347	2965	0.549950	CCCAGCAGGATCCACTTGAT	59.450	55.000	15.82	0.00	38.24	2.57
2351	2969	1.136329	AACACCCAGCAGGATCCACT	61.136	55.000	15.82	8.10	39.89	4.00
2390	3273	1.421485	CTCAACAAGCCGATCGCAC	59.579	57.895	10.32	3.69	41.38	5.34
2445	3328	1.157870	CGGCATCCATACCAACGACC	61.158	60.000	0.00	0.00	0.00	4.79
2451	3334	1.447217	CTGCTCGGCATCCATACCA	59.553	57.895	0.00	0.00	38.13	3.25
2452	3335	1.963338	GCTGCTCGGCATCCATACC	60.963	63.158	0.00	0.00	38.13	2.73
2454	3337	2.029518	CGCTGCTCGGCATCCATA	59.970	61.111	0.00	0.00	38.13	2.74
2478	3361	1.360194	CTGCCAAGCTGAAGAGAGCG	61.360	60.000	0.00	0.00	44.24	5.03
2479	3362	1.025647	CCTGCCAAGCTGAAGAGAGC	61.026	60.000	0.00	0.00	39.46	4.09
2480	3363	0.612229	TCCTGCCAAGCTGAAGAGAG	59.388	55.000	0.00	0.00	0.00	3.20
2481	3364	0.612229	CTCCTGCCAAGCTGAAGAGA	59.388	55.000	0.00	0.00	0.00	3.10
2482	3365	0.612229	TCTCCTGCCAAGCTGAAGAG	59.388	55.000	0.00	0.00	0.00	2.85
2483	3366	1.065636	CATCTCCTGCCAAGCTGAAGA	60.066	52.381	0.00	0.00	0.00	2.87
2484	3367	1.380524	CATCTCCTGCCAAGCTGAAG	58.619	55.000	0.00	0.00	0.00	3.02
2485	3368	0.679002	GCATCTCCTGCCAAGCTGAA	60.679	55.000	0.00	0.00	45.66	3.02
2486	3369	1.077930	GCATCTCCTGCCAAGCTGA	60.078	57.895	0.00	0.00	45.66	4.26
2487	3370	3.510846	GCATCTCCTGCCAAGCTG	58.489	61.111	0.00	0.00	45.66	4.24
2495	3378	2.887568	GCGTCGTGGCATCTCCTG	60.888	66.667	0.00	0.00	35.26	3.86
2496	3379	3.069980	GAGCGTCGTGGCATCTCCT	62.070	63.158	0.00	0.00	35.26	3.69
2497	3380	2.583593	GAGCGTCGTGGCATCTCC	60.584	66.667	0.00	0.00	34.64	3.71
2498	3381	2.583593	GGAGCGTCGTGGCATCTC	60.584	66.667	0.00	0.00	34.64	2.75
2499	3382	3.069980	GAGGAGCGTCGTGGCATCT	62.070	63.158	0.00	0.57	34.64	2.90
2500	3383	2.564553	AAGAGGAGCGTCGTGGCATC	62.565	60.000	0.00	0.00	34.64	3.91
2501	3384	2.650116	AAGAGGAGCGTCGTGGCAT	61.650	57.895	0.00	0.00	34.64	4.40
2502	3385	3.303135	AAGAGGAGCGTCGTGGCA	61.303	61.111	0.00	0.00	34.64	4.92
2503	3386	2.811317	CAAGAGGAGCGTCGTGGC	60.811	66.667	0.00	0.00	0.00	5.01
2504	3387	2.125912	CCAAGAGGAGCGTCGTGG	60.126	66.667	9.95	9.95	39.33	4.94
2505	3388	1.734477	CACCAAGAGGAGCGTCGTG	60.734	63.158	0.00	0.00	38.69	4.35
2506	3389	0.892358	TACACCAAGAGGAGCGTCGT	60.892	55.000	0.00	0.00	38.69	4.34
2507	3390	0.456312	GTACACCAAGAGGAGCGTCG	60.456	60.000	0.00	0.00	38.69	5.12
2508	3391	0.456312	CGTACACCAAGAGGAGCGTC	60.456	60.000	0.00	0.00	38.69	5.19
2509	3392	1.585006	CGTACACCAAGAGGAGCGT	59.415	57.895	0.00	0.00	38.69	5.07
2510	3393	1.805945	GCGTACACCAAGAGGAGCG	60.806	63.158	0.00	0.00	38.69	5.03
2511	3394	1.805945	CGCGTACACCAAGAGGAGC	60.806	63.158	0.00	0.00	38.69	4.70
2512	3395	1.805945	GCGCGTACACCAAGAGGAG	60.806	63.158	8.43	0.00	38.69	3.69
2513	3396	2.260434	GCGCGTACACCAAGAGGA	59.740	61.111	8.43	0.00	38.69	3.71
2514	3397	2.813908	GGCGCGTACACCAAGAGG	60.814	66.667	8.43	0.00	42.21	3.69
2515	3398	1.666553	TTGGCGCGTACACCAAGAG	60.667	57.895	8.43	0.00	40.98	2.85
2516	3399	2.422165	TTGGCGCGTACACCAAGA	59.578	55.556	8.43	0.00	40.98	3.02
2519	3402	1.015085	GTACATTGGCGCGTACACCA	61.015	55.000	15.59	2.93	38.28	4.17
2520	3403	1.711500	GTACATTGGCGCGTACACC	59.289	57.895	15.59	0.00	38.28	4.16
2521	3404	1.342473	CGTACATTGGCGCGTACAC	59.658	57.895	18.96	5.15	38.29	2.90
2522	3405	3.769965	CGTACATTGGCGCGTACA	58.230	55.556	18.96	4.48	38.29	2.90

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.