Multiple sequence alignment - TraesCS5A01G057700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G057700 chr5A 100.000 5990 0 0 1 5990 55166751 55160762 0.000000e+00 11062
1 TraesCS5A01G057700 chr5A 93.939 66 4 0 1116 1181 55165582 55165517 3.820000e-17 100
2 TraesCS5A01G057700 chr5A 93.939 66 4 0 1170 1235 55165636 55165571 3.820000e-17 100
3 TraesCS5A01G057700 chr5D 91.337 3567 201 43 1996 5491 65906862 65903333 0.000000e+00 4776
4 TraesCS5A01G057700 chr5D 98.289 409 7 0 1170 1578 65907269 65906861 0.000000e+00 717
5 TraesCS5A01G057700 chr5D 98.000 400 7 1 782 1181 65907602 65907204 0.000000e+00 693
6 TraesCS5A01G057700 chr5D 77.522 694 128 19 4058 4735 534006473 534005792 5.630000e-105 392
7 TraesCS5A01G057700 chr5D 85.602 382 28 9 5493 5874 65903300 65902946 5.670000e-100 375
8 TraesCS5A01G057700 chr5D 86.667 165 22 0 4826 4990 534005318 534005154 3.690000e-42 183
9 TraesCS5A01G057700 chr5D 88.321 137 16 0 1185 1321 534007902 534007766 1.340000e-36 165
10 TraesCS5A01G057700 chr5D 95.960 99 3 1 5862 5960 65902924 65902827 6.210000e-35 159
11 TraesCS5A01G057700 chr5B 92.018 2017 113 21 2756 4739 65187339 65189340 0.000000e+00 2789
12 TraesCS5A01G057700 chr5B 89.290 943 73 9 1745 2675 65186388 65187314 0.000000e+00 1157
13 TraesCS5A01G057700 chr5B 93.440 747 32 6 4741 5470 65189467 65190213 0.000000e+00 1092
14 TraesCS5A01G057700 chr5B 90.372 457 38 2 5504 5960 65190209 65190659 4.000000e-166 595
15 TraesCS5A01G057700 chr5B 76.777 788 143 33 3971 4735 674269693 674268923 7.230000e-109 405
16 TraesCS5A01G057700 chr5B 92.720 261 16 1 921 1181 65185630 65185887 2.040000e-99 374
17 TraesCS5A01G057700 chr5B 96.685 181 6 0 1170 1350 65185822 65186002 9.760000e-78 302
18 TraesCS5A01G057700 chr5B 75.369 609 144 6 6 611 605998549 605997944 7.600000e-74 289
19 TraesCS5A01G057700 chr5B 87.879 165 20 0 4826 4990 674268494 674268330 1.700000e-45 195
20 TraesCS5A01G057700 chr2A 85.463 2724 280 60 2403 5052 75659891 75657210 0.000000e+00 2730
21 TraesCS5A01G057700 chr2B 86.049 1964 205 42 3465 5386 116850619 116848683 0.000000e+00 2045
22 TraesCS5A01G057700 chr2B 81.149 1305 165 37 2129 3416 116852003 116850763 0.000000e+00 972
23 TraesCS5A01G057700 chr3A 98.189 773 14 0 1 773 668399977 668399205 0.000000e+00 1351
24 TraesCS5A01G057700 chr2D 83.447 1323 159 30 2129 3421 75763973 75762681 0.000000e+00 1175
25 TraesCS5A01G057700 chr2D 85.614 570 59 15 3864 4424 75762685 75762130 1.450000e-160 577
26 TraesCS5A01G057700 chr7B 93.883 752 44 2 1 751 205381477 205380727 0.000000e+00 1133
27 TraesCS5A01G057700 chr7B 75.000 660 150 14 2 652 488708915 488708262 2.110000e-74 291
28 TraesCS5A01G057700 chr6D 90.501 779 65 8 1 773 133230407 133229632 0.000000e+00 1020
29 TraesCS5A01G057700 chr6D 86.480 392 50 3 5565 5954 434511951 434511561 1.540000e-115 427
30 TraesCS5A01G057700 chr1A 88.993 745 75 6 42 781 554768119 554767377 0.000000e+00 915
31 TraesCS5A01G057700 chr1A 77.157 197 42 3 232 426 466044332 466044137 1.760000e-20 111
32 TraesCS5A01G057700 chr4A 78.382 680 125 16 4068 4735 637922679 637923348 7.180000e-114 422
33 TraesCS5A01G057700 chr4A 87.805 164 20 0 4827 4990 637923804 637923967 6.130000e-45 193
34 TraesCS5A01G057700 chr4A 89.189 111 12 0 1208 1318 637921173 637921283 8.100000e-29 139
35 TraesCS5A01G057700 chr6A 85.714 392 52 4 5565 5954 581889360 581888971 1.550000e-110 411
36 TraesCS5A01G057700 chr7A 73.934 633 153 11 6 631 634692403 634693030 1.670000e-60 244


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G057700 chr5A 55160762 55166751 5989 True 3754.000000 11062 95.959333 1 5990 3 chr5A.!!$R1 5989
1 TraesCS5A01G057700 chr5D 65902827 65907602 4775 True 1344.000000 4776 93.837600 782 5960 5 chr5D.!!$R1 5178
2 TraesCS5A01G057700 chr5D 534005154 534007902 2748 True 246.666667 392 84.170000 1185 4990 3 chr5D.!!$R2 3805
3 TraesCS5A01G057700 chr5B 65185630 65190659 5029 False 1051.500000 2789 92.420833 921 5960 6 chr5B.!!$F1 5039
4 TraesCS5A01G057700 chr5B 674268330 674269693 1363 True 300.000000 405 82.328000 3971 4990 2 chr5B.!!$R2 1019
5 TraesCS5A01G057700 chr5B 605997944 605998549 605 True 289.000000 289 75.369000 6 611 1 chr5B.!!$R1 605
6 TraesCS5A01G057700 chr2A 75657210 75659891 2681 True 2730.000000 2730 85.463000 2403 5052 1 chr2A.!!$R1 2649
7 TraesCS5A01G057700 chr2B 116848683 116852003 3320 True 1508.500000 2045 83.599000 2129 5386 2 chr2B.!!$R1 3257
8 TraesCS5A01G057700 chr3A 668399205 668399977 772 True 1351.000000 1351 98.189000 1 773 1 chr3A.!!$R1 772
9 TraesCS5A01G057700 chr2D 75762130 75763973 1843 True 876.000000 1175 84.530500 2129 4424 2 chr2D.!!$R1 2295
10 TraesCS5A01G057700 chr7B 205380727 205381477 750 True 1133.000000 1133 93.883000 1 751 1 chr7B.!!$R1 750
11 TraesCS5A01G057700 chr7B 488708262 488708915 653 True 291.000000 291 75.000000 2 652 1 chr7B.!!$R2 650
12 TraesCS5A01G057700 chr6D 133229632 133230407 775 True 1020.000000 1020 90.501000 1 773 1 chr6D.!!$R1 772
13 TraesCS5A01G057700 chr1A 554767377 554768119 742 True 915.000000 915 88.993000 42 781 1 chr1A.!!$R2 739
14 TraesCS5A01G057700 chr4A 637921173 637923967 2794 False 251.333333 422 85.125333 1208 4990 3 chr4A.!!$F1 3782
15 TraesCS5A01G057700 chr7A 634692403 634693030 627 False 244.000000 244 73.934000 6 631 1 chr7A.!!$F1 625

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
713 723 0.121197 AAGGGGAGAGGGGACATGAA 59.879 55.0 0.00 0.0 0.00 2.57 F
1650 1795 0.250901 ACTCTTTGTTGCTCCGCCAT 60.251 50.0 0.00 0.0 0.00 4.40 F
1686 1831 0.039165 GCCTTGCACAAGTAAGCCAC 60.039 55.0 9.41 0.0 36.30 5.01 F
1693 1838 0.107831 ACAAGTAAGCCACGCAAGGA 59.892 50.0 0.00 0.0 46.39 3.36 F
1741 1886 0.250234 TGGAGGCATTTGTCGAGGAG 59.750 55.0 0.00 0.0 0.00 3.69 F
2316 2478 0.251077 ACCTAGGTCACGAGTCGGTT 60.251 55.0 18.30 0.0 0.00 4.44 F
3694 4375 0.039437 TGTCTTCCGCTCGTGAAGTC 60.039 55.0 15.03 12.0 40.10 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1674 1819 0.107831 TCCTTGCGTGGCTTACTTGT 59.892 50.000 0.00 0.0 0.00 3.16 R
2543 2707 0.109153 TCATCCGCAATAGCAGCCAT 59.891 50.000 0.00 0.0 42.27 4.40 R
2546 2710 0.109873 GCATCATCCGCAATAGCAGC 60.110 55.000 0.00 0.0 42.27 5.25 R
2592 2756 0.179187 CGATCGTGACAGCTTCGACT 60.179 55.000 7.03 0.0 36.46 4.18 R
3166 3398 0.520404 CAATGCTCTCTTTGCACGCT 59.480 50.000 0.00 0.0 43.59 5.07 R
3741 4436 2.684374 CTGATTGTTCGCATCCATCCAA 59.316 45.455 0.00 0.0 0.00 3.53 R
5408 6781 2.278657 TGGTGATCCCCATGGTAGAA 57.721 50.000 11.73 0.0 0.00 2.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
558 560 0.600057 CATCATCGCCTCCAGATCGA 59.400 55.000 0.00 0.00 36.63 3.59
712 722 0.326618 GAAGGGGAGAGGGGACATGA 60.327 60.000 0.00 0.00 0.00 3.07
713 723 0.121197 AAGGGGAGAGGGGACATGAA 59.879 55.000 0.00 0.00 0.00 2.57
714 724 0.327000 AGGGGAGAGGGGACATGAAG 60.327 60.000 0.00 0.00 0.00 3.02
715 725 0.621862 GGGGAGAGGGGACATGAAGT 60.622 60.000 0.00 0.00 0.00 3.01
716 726 0.833949 GGGAGAGGGGACATGAAGTC 59.166 60.000 0.00 0.00 46.83 3.01
717 727 1.623834 GGGAGAGGGGACATGAAGTCT 60.624 57.143 0.00 0.00 46.72 3.24
723 733 2.873133 GGGACATGAAGTCTCTACGG 57.127 55.000 0.00 0.00 44.72 4.02
724 734 2.100989 GGGACATGAAGTCTCTACGGT 58.899 52.381 0.00 0.00 44.72 4.83
725 735 2.159226 GGGACATGAAGTCTCTACGGTG 60.159 54.545 0.00 0.00 44.72 4.94
726 736 2.159226 GGACATGAAGTCTCTACGGTGG 60.159 54.545 0.00 0.00 46.72 4.61
727 737 2.492484 GACATGAAGTCTCTACGGTGGT 59.508 50.000 0.00 0.00 44.09 4.16
728 738 2.231478 ACATGAAGTCTCTACGGTGGTG 59.769 50.000 0.00 0.00 0.00 4.17
729 739 1.254026 TGAAGTCTCTACGGTGGTGG 58.746 55.000 0.00 0.00 0.00 4.61
730 740 1.202964 TGAAGTCTCTACGGTGGTGGA 60.203 52.381 0.00 0.00 32.26 4.02
731 741 1.201880 GAAGTCTCTACGGTGGTGGAC 59.798 57.143 10.36 10.36 29.82 4.02
732 742 0.404812 AGTCTCTACGGTGGTGGACT 59.595 55.000 13.37 13.37 31.72 3.85
733 743 1.632409 AGTCTCTACGGTGGTGGACTA 59.368 52.381 15.94 0.00 33.42 2.59
734 744 2.015587 GTCTCTACGGTGGTGGACTAG 58.984 57.143 10.81 0.00 29.82 2.57
735 745 0.739561 CTCTACGGTGGTGGACTAGC 59.260 60.000 0.00 0.00 29.82 3.42
736 746 0.682209 TCTACGGTGGTGGACTAGCC 60.682 60.000 0.00 0.00 37.10 3.93
737 747 2.001361 CTACGGTGGTGGACTAGCCG 62.001 65.000 0.00 0.00 46.83 5.52
738 748 4.814294 CGGTGGTGGACTAGCCGC 62.814 72.222 7.89 7.89 46.77 6.53
759 769 4.303257 CGAGAGGAAGGCAAACCC 57.697 61.111 0.00 0.00 36.11 4.11
761 771 0.902531 CGAGAGGAAGGCAAACCCTA 59.097 55.000 0.00 0.00 45.62 3.53
762 772 1.278127 CGAGAGGAAGGCAAACCCTAA 59.722 52.381 0.00 0.00 45.62 2.69
763 773 2.712709 GAGAGGAAGGCAAACCCTAAC 58.287 52.381 0.00 0.00 45.62 2.34
764 774 1.003233 AGAGGAAGGCAAACCCTAACG 59.997 52.381 0.00 0.00 45.62 3.18
765 775 1.002773 GAGGAAGGCAAACCCTAACGA 59.997 52.381 0.00 0.00 45.62 3.85
766 776 1.003233 AGGAAGGCAAACCCTAACGAG 59.997 52.381 0.00 0.00 45.62 4.18
767 777 1.002773 GGAAGGCAAACCCTAACGAGA 59.997 52.381 0.00 0.00 45.62 4.04
768 778 2.347731 GAAGGCAAACCCTAACGAGAG 58.652 52.381 0.00 0.00 45.62 3.20
769 779 0.613777 AGGCAAACCCTAACGAGAGG 59.386 55.000 0.00 0.00 44.08 3.69
775 785 4.333417 CCTAACGAGAGGGGACGT 57.667 61.111 0.00 0.00 44.57 4.34
776 786 3.483954 CCTAACGAGAGGGGACGTA 57.516 57.895 0.00 0.00 41.87 3.57
777 787 1.978454 CCTAACGAGAGGGGACGTAT 58.022 55.000 0.00 0.00 41.87 3.06
778 788 3.131709 CCTAACGAGAGGGGACGTATA 57.868 52.381 0.00 0.00 41.87 1.47
779 789 3.480470 CCTAACGAGAGGGGACGTATAA 58.520 50.000 0.00 0.00 41.87 0.98
780 790 4.077822 CCTAACGAGAGGGGACGTATAAT 58.922 47.826 0.00 0.00 41.87 1.28
801 811 2.301902 GACGGCGCTGCATTTGAGAG 62.302 60.000 18.15 0.00 0.00 3.20
861 871 1.246056 GCACATTCTGGCTGCTTGGA 61.246 55.000 0.00 0.00 0.00 3.53
1140 1204 4.792804 GTGGCCTGCTCCAGCTCC 62.793 72.222 3.32 0.00 42.66 4.70
1142 1206 4.792804 GGCCTGCTCCAGCTCCAC 62.793 72.222 0.00 0.00 42.66 4.02
1143 1207 4.792804 GCCTGCTCCAGCTCCACC 62.793 72.222 0.00 0.00 42.66 4.61
1144 1208 4.463879 CCTGCTCCAGCTCCACCG 62.464 72.222 0.00 0.00 42.66 4.94
1145 1209 3.385384 CTGCTCCAGCTCCACCGA 61.385 66.667 0.00 0.00 42.66 4.69
1146 1210 3.368190 CTGCTCCAGCTCCACCGAG 62.368 68.421 0.00 0.00 42.66 4.63
1147 1211 4.154347 GCTCCAGCTCCACCGAGG 62.154 72.222 0.00 0.00 36.55 4.63
1148 1212 2.363018 CTCCAGCTCCACCGAGGA 60.363 66.667 0.00 0.00 46.75 3.71
1155 1219 2.680352 TCCACCGAGGAGGACAGC 60.680 66.667 4.13 0.00 43.07 4.40
1156 1220 2.997315 CCACCGAGGAGGACAGCA 60.997 66.667 0.00 0.00 45.00 4.41
1157 1221 2.362369 CCACCGAGGAGGACAGCAT 61.362 63.158 0.00 0.00 45.00 3.79
1158 1222 1.153489 CACCGAGGAGGACAGCATG 60.153 63.158 0.00 0.00 45.00 4.06
1159 1223 1.305297 ACCGAGGAGGACAGCATGA 60.305 57.895 0.00 0.00 45.00 3.07
1160 1224 1.142748 CCGAGGAGGACAGCATGAC 59.857 63.158 0.00 0.00 45.00 3.06
1161 1225 1.326213 CCGAGGAGGACAGCATGACT 61.326 60.000 0.00 0.00 45.00 3.41
1162 1226 0.534412 CGAGGAGGACAGCATGACTT 59.466 55.000 0.00 0.00 39.69 3.01
1163 1227 1.751351 CGAGGAGGACAGCATGACTTA 59.249 52.381 0.00 0.00 39.69 2.24
1164 1228 2.480416 CGAGGAGGACAGCATGACTTAC 60.480 54.545 0.00 0.00 39.69 2.34
1165 1229 2.497675 GAGGAGGACAGCATGACTTACA 59.502 50.000 0.00 0.00 39.69 2.41
1166 1230 2.906389 AGGAGGACAGCATGACTTACAA 59.094 45.455 0.00 0.00 39.69 2.41
1167 1231 3.055530 AGGAGGACAGCATGACTTACAAG 60.056 47.826 0.00 0.00 39.69 3.16
1168 1232 3.265791 GAGGACAGCATGACTTACAAGG 58.734 50.000 0.00 0.00 39.69 3.61
1169 1233 2.026822 AGGACAGCATGACTTACAAGGG 60.027 50.000 0.00 0.00 39.69 3.95
1170 1234 1.740025 GACAGCATGACTTACAAGGGC 59.260 52.381 0.00 0.00 39.69 5.19
1171 1235 0.729116 CAGCATGACTTACAAGGGCG 59.271 55.000 0.00 0.00 39.69 6.13
1172 1236 1.026718 AGCATGACTTACAAGGGCGC 61.027 55.000 0.00 0.00 32.28 6.53
1173 1237 1.993369 GCATGACTTACAAGGGCGCC 61.993 60.000 21.18 21.18 0.00 6.53
1174 1238 1.449601 ATGACTTACAAGGGCGCCG 60.450 57.895 22.54 9.65 0.00 6.46
1175 1239 2.818274 GACTTACAAGGGCGCCGG 60.818 66.667 22.54 15.22 0.00 6.13
1176 1240 3.600898 GACTTACAAGGGCGCCGGT 62.601 63.158 22.54 20.39 0.00 5.28
1177 1241 3.124921 CTTACAAGGGCGCCGGTG 61.125 66.667 22.54 22.53 0.00 4.94
1463 1544 9.991906 GTAGCTTGGGTAAGTAAATGATGTATA 57.008 33.333 0.00 0.00 36.27 1.47
1585 1730 4.931601 TCTGAATTTCCATCAGAGTTCGTG 59.068 41.667 2.27 0.00 46.23 4.35
1586 1731 4.641396 TGAATTTCCATCAGAGTTCGTGT 58.359 39.130 0.00 0.00 0.00 4.49
1587 1732 4.452114 TGAATTTCCATCAGAGTTCGTGTG 59.548 41.667 0.00 0.00 0.00 3.82
1588 1733 1.795768 TTCCATCAGAGTTCGTGTGC 58.204 50.000 0.00 0.00 0.00 4.57
1589 1734 0.388520 TCCATCAGAGTTCGTGTGCG 60.389 55.000 0.00 0.00 39.92 5.34
1591 1736 1.139989 CATCAGAGTTCGTGTGCGTT 58.860 50.000 0.00 0.00 39.49 4.84
1592 1737 2.324860 CATCAGAGTTCGTGTGCGTTA 58.675 47.619 0.00 0.00 39.49 3.18
1593 1738 2.495409 TCAGAGTTCGTGTGCGTTAA 57.505 45.000 0.00 0.00 39.49 2.01
1594 1739 3.021269 TCAGAGTTCGTGTGCGTTAAT 57.979 42.857 0.00 0.00 39.49 1.40
1595 1740 3.386486 TCAGAGTTCGTGTGCGTTAATT 58.614 40.909 0.00 0.00 39.49 1.40
1596 1741 3.805422 TCAGAGTTCGTGTGCGTTAATTT 59.195 39.130 0.00 0.00 39.49 1.82
1597 1742 3.900116 CAGAGTTCGTGTGCGTTAATTTG 59.100 43.478 0.00 0.00 39.49 2.32
1599 1744 2.032302 AGTTCGTGTGCGTTAATTTGCA 59.968 40.909 0.00 0.00 39.13 4.08
1600 1745 2.308347 TCGTGTGCGTTAATTTGCAG 57.692 45.000 0.87 0.00 42.68 4.41
1601 1746 1.867865 TCGTGTGCGTTAATTTGCAGA 59.132 42.857 0.87 0.00 42.68 4.26
1602 1747 2.096466 TCGTGTGCGTTAATTTGCAGAG 60.096 45.455 0.87 0.00 42.68 3.35
1603 1748 1.978782 GTGTGCGTTAATTTGCAGAGC 59.021 47.619 0.87 0.00 42.68 4.09
1604 1749 1.879380 TGTGCGTTAATTTGCAGAGCT 59.121 42.857 0.00 0.00 42.68 4.09
1605 1750 2.245096 GTGCGTTAATTTGCAGAGCTG 58.755 47.619 0.00 0.00 42.68 4.24
1606 1751 1.879380 TGCGTTAATTTGCAGAGCTGT 59.121 42.857 0.00 0.00 35.90 4.40
1607 1752 2.293122 TGCGTTAATTTGCAGAGCTGTT 59.707 40.909 0.00 0.00 35.90 3.16
1608 1753 3.243367 TGCGTTAATTTGCAGAGCTGTTT 60.243 39.130 0.00 0.00 35.90 2.83
1609 1754 3.361940 GCGTTAATTTGCAGAGCTGTTTC 59.638 43.478 0.00 0.00 0.00 2.78
1610 1755 3.599514 CGTTAATTTGCAGAGCTGTTTCG 59.400 43.478 0.00 0.00 0.00 3.46
1611 1756 4.537015 GTTAATTTGCAGAGCTGTTTCGT 58.463 39.130 0.00 0.00 0.00 3.85
1612 1757 3.715628 AATTTGCAGAGCTGTTTCGTT 57.284 38.095 0.00 0.00 0.00 3.85
1613 1758 2.755836 TTTGCAGAGCTGTTTCGTTC 57.244 45.000 0.00 0.00 0.00 3.95
1614 1759 1.662517 TTGCAGAGCTGTTTCGTTCA 58.337 45.000 0.00 0.00 0.00 3.18
1615 1760 1.220529 TGCAGAGCTGTTTCGTTCAG 58.779 50.000 0.00 0.00 36.18 3.02
1616 1761 1.221414 GCAGAGCTGTTTCGTTCAGT 58.779 50.000 0.00 0.00 35.60 3.41
1617 1762 1.599542 GCAGAGCTGTTTCGTTCAGTT 59.400 47.619 0.00 0.00 35.60 3.16
1618 1763 2.348966 GCAGAGCTGTTTCGTTCAGTTC 60.349 50.000 0.00 10.76 41.27 3.01
1619 1764 2.221981 CAGAGCTGTTTCGTTCAGTTCC 59.778 50.000 0.00 3.14 41.67 3.62
1620 1765 1.192534 GAGCTGTTTCGTTCAGTTCCG 59.807 52.381 0.00 0.00 37.24 4.30
1621 1766 0.935196 GCTGTTTCGTTCAGTTCCGT 59.065 50.000 0.00 0.00 35.60 4.69
1622 1767 1.332904 GCTGTTTCGTTCAGTTCCGTG 60.333 52.381 0.00 0.00 35.60 4.94
1623 1768 2.198406 CTGTTTCGTTCAGTTCCGTGA 58.802 47.619 0.00 0.00 0.00 4.35
1624 1769 2.198406 TGTTTCGTTCAGTTCCGTGAG 58.802 47.619 0.00 0.00 0.00 3.51
1639 1784 3.099267 CGTGAGGTCTTGACTCTTTGT 57.901 47.619 0.61 0.00 35.98 2.83
1640 1785 3.458189 CGTGAGGTCTTGACTCTTTGTT 58.542 45.455 0.61 0.00 35.98 2.83
1641 1786 3.246226 CGTGAGGTCTTGACTCTTTGTTG 59.754 47.826 0.61 0.00 35.98 3.33
1642 1787 3.002759 GTGAGGTCTTGACTCTTTGTTGC 59.997 47.826 0.61 0.00 35.98 4.17
1643 1788 3.118261 TGAGGTCTTGACTCTTTGTTGCT 60.118 43.478 0.61 0.00 35.98 3.91
1644 1789 3.471680 AGGTCTTGACTCTTTGTTGCTC 58.528 45.455 0.61 0.00 0.00 4.26
1645 1790 2.550180 GGTCTTGACTCTTTGTTGCTCC 59.450 50.000 0.61 0.00 0.00 4.70
1646 1791 2.221981 GTCTTGACTCTTTGTTGCTCCG 59.778 50.000 0.00 0.00 0.00 4.63
1647 1792 0.944386 TTGACTCTTTGTTGCTCCGC 59.056 50.000 0.00 0.00 0.00 5.54
1648 1793 0.884704 TGACTCTTTGTTGCTCCGCC 60.885 55.000 0.00 0.00 0.00 6.13
1649 1794 0.884704 GACTCTTTGTTGCTCCGCCA 60.885 55.000 0.00 0.00 0.00 5.69
1650 1795 0.250901 ACTCTTTGTTGCTCCGCCAT 60.251 50.000 0.00 0.00 0.00 4.40
1651 1796 0.883833 CTCTTTGTTGCTCCGCCATT 59.116 50.000 0.00 0.00 0.00 3.16
1652 1797 0.881118 TCTTTGTTGCTCCGCCATTC 59.119 50.000 0.00 0.00 0.00 2.67
1653 1798 0.597568 CTTTGTTGCTCCGCCATTCA 59.402 50.000 0.00 0.00 0.00 2.57
1654 1799 0.597568 TTTGTTGCTCCGCCATTCAG 59.402 50.000 0.00 0.00 0.00 3.02
1655 1800 1.865788 TTGTTGCTCCGCCATTCAGC 61.866 55.000 0.00 0.00 0.00 4.26
1682 1827 4.847255 GCGCCTTGCACAAGTAAG 57.153 55.556 9.41 2.02 45.45 2.34
1683 1828 1.442688 GCGCCTTGCACAAGTAAGC 60.443 57.895 9.41 7.67 45.45 3.09
1684 1829 1.210155 CGCCTTGCACAAGTAAGCC 59.790 57.895 9.41 0.00 36.30 4.35
1685 1830 1.514678 CGCCTTGCACAAGTAAGCCA 61.515 55.000 9.41 0.00 36.30 4.75
1686 1831 0.039165 GCCTTGCACAAGTAAGCCAC 60.039 55.000 9.41 0.00 36.30 5.01
1687 1832 0.238289 CCTTGCACAAGTAAGCCACG 59.762 55.000 9.41 0.00 36.30 4.94
1689 1834 1.098129 TTGCACAAGTAAGCCACGCA 61.098 50.000 0.00 0.00 0.00 5.24
1690 1835 1.098129 TGCACAAGTAAGCCACGCAA 61.098 50.000 0.00 0.00 0.00 4.85
1693 1838 0.107831 ACAAGTAAGCCACGCAAGGA 59.892 50.000 0.00 0.00 46.39 3.36
1694 1839 1.271379 ACAAGTAAGCCACGCAAGGAT 60.271 47.619 0.00 0.00 46.39 3.24
1695 1840 1.131126 CAAGTAAGCCACGCAAGGATG 59.869 52.381 0.00 0.00 46.39 3.51
1697 1842 1.553248 AGTAAGCCACGCAAGGATGTA 59.447 47.619 0.00 0.00 46.39 2.29
1698 1843 2.170607 AGTAAGCCACGCAAGGATGTAT 59.829 45.455 0.00 0.00 46.39 2.29
1699 1844 1.668419 AAGCCACGCAAGGATGTATC 58.332 50.000 0.00 0.00 46.39 2.24
1700 1845 0.541392 AGCCACGCAAGGATGTATCA 59.459 50.000 0.00 0.00 46.39 2.15
1701 1846 0.940126 GCCACGCAAGGATGTATCAG 59.060 55.000 0.00 0.00 46.39 2.90
1702 1847 1.743772 GCCACGCAAGGATGTATCAGT 60.744 52.381 0.00 0.00 46.39 3.41
1703 1848 1.935873 CCACGCAAGGATGTATCAGTG 59.064 52.381 0.00 0.00 46.39 3.66
1707 1852 2.368439 GCAAGGATGTATCAGTGGCAA 58.632 47.619 0.00 0.00 0.00 4.52
1708 1853 2.754552 GCAAGGATGTATCAGTGGCAAA 59.245 45.455 0.00 0.00 0.00 3.68
1709 1854 3.181493 GCAAGGATGTATCAGTGGCAAAG 60.181 47.826 0.00 0.00 0.00 2.77
1711 1856 3.878778 AGGATGTATCAGTGGCAAAGAC 58.121 45.455 0.00 0.00 0.00 3.01
1712 1857 2.609459 GGATGTATCAGTGGCAAAGACG 59.391 50.000 0.00 0.00 0.00 4.18
1714 1859 1.338674 TGTATCAGTGGCAAAGACGGG 60.339 52.381 0.00 0.00 0.00 5.28
1715 1860 0.251916 TATCAGTGGCAAAGACGGGG 59.748 55.000 0.00 0.00 0.00 5.73
1716 1861 1.488705 ATCAGTGGCAAAGACGGGGA 61.489 55.000 0.00 0.00 0.00 4.81
1718 1863 2.147387 AGTGGCAAAGACGGGGACT 61.147 57.895 0.00 0.00 0.00 3.85
1719 1864 1.671379 GTGGCAAAGACGGGGACTC 60.671 63.158 0.00 0.00 0.00 3.36
1720 1865 2.434359 GGCAAAGACGGGGACTCG 60.434 66.667 0.00 0.00 0.00 4.18
1722 1867 1.218316 GCAAAGACGGGGACTCGAT 59.782 57.895 0.00 0.00 0.00 3.59
1725 1870 0.613853 AAAGACGGGGACTCGATGGA 60.614 55.000 0.00 0.00 0.00 3.41
1726 1871 1.038130 AAGACGGGGACTCGATGGAG 61.038 60.000 2.78 2.78 46.13 3.86
1727 1872 2.442272 ACGGGGACTCGATGGAGG 60.442 66.667 9.72 0.00 44.93 4.30
1735 1880 2.029838 ACTCGATGGAGGCATTTGTC 57.970 50.000 9.72 0.00 44.93 3.18
1736 1881 0.933097 CTCGATGGAGGCATTTGTCG 59.067 55.000 0.00 0.00 36.61 4.35
1737 1882 0.534873 TCGATGGAGGCATTTGTCGA 59.465 50.000 0.00 0.00 35.97 4.20
1738 1883 0.933097 CGATGGAGGCATTTGTCGAG 59.067 55.000 0.00 0.00 0.00 4.04
1739 1884 1.303309 GATGGAGGCATTTGTCGAGG 58.697 55.000 0.00 0.00 0.00 4.63
1740 1885 0.911769 ATGGAGGCATTTGTCGAGGA 59.088 50.000 0.00 0.00 0.00 3.71
1741 1886 0.250234 TGGAGGCATTTGTCGAGGAG 59.750 55.000 0.00 0.00 0.00 3.69
1742 1887 0.462759 GGAGGCATTTGTCGAGGAGG 60.463 60.000 0.00 0.00 0.00 4.30
1743 1888 0.462759 GAGGCATTTGTCGAGGAGGG 60.463 60.000 0.00 0.00 0.00 4.30
1797 1942 1.390123 CGTAAACGATGAGCCACACAG 59.610 52.381 0.00 0.00 43.02 3.66
1812 1957 1.286553 ACACAGGGTTTTCCAAGTCCA 59.713 47.619 0.00 0.00 42.91 4.02
1816 1961 1.856920 AGGGTTTTCCAAGTCCAAGGA 59.143 47.619 0.00 0.00 42.91 3.36
1818 1963 1.607148 GGTTTTCCAAGTCCAAGGACG 59.393 52.381 13.23 0.77 43.70 4.79
1842 1987 0.727398 CGGGAGGAAGTTTCGCATTC 59.273 55.000 0.00 0.00 0.00 2.67
1856 2001 1.951510 CATTCGTGTTGCAGCCACT 59.048 52.632 14.36 0.00 0.00 4.00
1863 2008 2.974148 TTGCAGCCACTGAGCGTG 60.974 61.111 0.00 0.00 43.41 5.34
1940 2085 2.616330 CGGGACATGTGTGGTGTGC 61.616 63.158 1.15 0.00 37.22 4.57
1976 2123 0.256752 AGTGCCTGCAAGCCATGATA 59.743 50.000 4.51 0.00 0.00 2.15
1979 2126 1.105167 GCCTGCAAGCCATGATAGCA 61.105 55.000 0.00 0.00 0.00 3.49
1981 2128 1.066605 CCTGCAAGCCATGATAGCAAC 59.933 52.381 0.00 0.00 34.45 4.17
2016 2164 2.313342 AGTCACTAGTCAGGGATGAGGT 59.687 50.000 0.00 0.00 36.34 3.85
2026 2174 2.028658 CAGGGATGAGGTGATGATACCG 60.029 54.545 0.00 0.00 45.56 4.02
2032 2180 1.000955 GAGGTGATGATACCGGCGATT 59.999 52.381 9.30 0.00 45.56 3.34
2063 2217 3.308866 GTGCACACAGAAGAACGTTTAGT 59.691 43.478 13.17 0.00 0.00 2.24
2064 2218 3.554324 TGCACACAGAAGAACGTTTAGTC 59.446 43.478 0.46 0.21 0.00 2.59
2065 2219 3.554324 GCACACAGAAGAACGTTTAGTCA 59.446 43.478 0.46 0.00 0.00 3.41
2066 2220 4.318121 GCACACAGAAGAACGTTTAGTCAG 60.318 45.833 0.46 0.13 0.00 3.51
2076 2230 2.073816 CGTTTAGTCAGCGGAACCAAT 58.926 47.619 0.00 0.00 0.00 3.16
2154 2308 9.867552 ACGAAGTAGGTGAGGAAGAACCTGATA 62.868 44.444 4.61 0.00 46.10 2.15
2188 2343 2.207590 TGATGAAGATCATGCGCAGAC 58.792 47.619 18.32 7.02 37.20 3.51
2236 2392 3.503748 GCCACAATGGTATAGAAGGATGC 59.496 47.826 0.00 0.00 40.46 3.91
2241 2397 9.751630 CCACAATGGTATAGAAGGATGCCTTCA 62.752 44.444 23.76 12.75 46.00 3.02
2316 2478 0.251077 ACCTAGGTCACGAGTCGGTT 60.251 55.000 18.30 0.00 0.00 4.44
2372 2534 6.623743 GCGCTTAGAAATATACTTTGACAACG 59.376 38.462 0.00 0.00 0.00 4.10
2389 2551 4.447734 GGGTACCGAGGACCAAGA 57.552 61.111 5.65 0.00 40.86 3.02
2409 2571 1.526575 CCGTCAAAGTTGCAGCCCAT 61.527 55.000 0.00 0.00 0.00 4.00
2455 2617 5.359756 TGCTCGATTAGTATTGATGCTTGT 58.640 37.500 0.00 0.00 0.00 3.16
2486 2648 2.096811 CACGTTTGGTTGATTGCAATGC 60.097 45.455 18.59 9.15 36.22 3.56
2543 2707 5.237815 GTGTAGACCATGTTGAGTTGATGA 58.762 41.667 0.00 0.00 0.00 2.92
2544 2708 5.877012 GTGTAGACCATGTTGAGTTGATGAT 59.123 40.000 0.00 0.00 0.00 2.45
2545 2709 5.876460 TGTAGACCATGTTGAGTTGATGATG 59.124 40.000 0.00 0.00 0.00 3.07
2546 2710 4.267536 AGACCATGTTGAGTTGATGATGG 58.732 43.478 0.00 0.00 37.07 3.51
2547 2711 2.756760 ACCATGTTGAGTTGATGATGGC 59.243 45.455 0.00 0.00 34.82 4.40
2587 2751 0.603065 CTCACATGGGAGTCACGACA 59.397 55.000 17.33 0.00 0.00 4.35
2588 2752 1.000843 CTCACATGGGAGTCACGACAA 59.999 52.381 17.33 0.00 0.00 3.18
2592 2756 2.565391 ACATGGGAGTCACGACAATGTA 59.435 45.455 0.00 0.00 0.00 2.29
2631 2801 3.771160 GGTGGCGACGATGGACCT 61.771 66.667 0.00 0.00 0.00 3.85
2633 2803 2.994995 TGGCGACGATGGACCTGT 60.995 61.111 0.00 0.00 0.00 4.00
2668 2838 3.242936 GCAAACGAAAGAAGCCAACTACA 60.243 43.478 0.00 0.00 0.00 2.74
2688 2858 2.029838 ACGCATGAAGACATCCCTTC 57.970 50.000 0.00 0.00 42.09 3.46
2702 2902 0.608130 CCCTTCTGTGACACATCCGA 59.392 55.000 9.11 0.00 0.00 4.55
2744 2961 0.681564 AGGAGCCGACTAGTGTCCAG 60.682 60.000 0.00 0.00 39.94 3.86
2745 2962 0.966370 GGAGCCGACTAGTGTCCAGT 60.966 60.000 0.00 0.00 39.94 4.00
2746 2963 0.452585 GAGCCGACTAGTGTCCAGTC 59.547 60.000 0.00 0.00 39.94 3.51
2754 2971 4.034258 GTGTCCAGTCGACGCCGA 62.034 66.667 10.46 4.01 44.76 5.54
2762 2979 2.809174 TCGACGCCGATGTGCAAG 60.809 61.111 0.00 0.00 40.30 4.01
2763 2980 3.112075 CGACGCCGATGTGCAAGT 61.112 61.111 0.00 0.00 38.22 3.16
2764 2981 1.803922 CGACGCCGATGTGCAAGTA 60.804 57.895 0.00 0.00 38.22 2.24
2765 2982 1.708027 GACGCCGATGTGCAAGTAC 59.292 57.895 0.00 0.00 0.00 2.73
2766 2983 1.005512 ACGCCGATGTGCAAGTACA 60.006 52.632 0.00 0.00 34.63 2.90
2767 2984 1.014044 ACGCCGATGTGCAAGTACAG 61.014 55.000 0.00 0.00 33.44 2.74
2768 2985 1.695893 CGCCGATGTGCAAGTACAGG 61.696 60.000 0.00 0.00 33.44 4.00
2769 2986 1.982073 GCCGATGTGCAAGTACAGGC 61.982 60.000 5.97 5.97 35.58 4.85
2802 3019 1.900981 CCATGGGCGACACAAACCA 60.901 57.895 2.85 0.00 37.41 3.67
2944 3173 3.253955 GCGATGCGGAAGTTGTGT 58.746 55.556 0.00 0.00 0.00 3.72
2957 3186 5.568023 CGGAAGTTGTGTTGGATCTAGGTTA 60.568 44.000 0.00 0.00 0.00 2.85
2970 3200 7.323420 TGGATCTAGGTTAAGATATTGCGATG 58.677 38.462 0.00 0.00 36.33 3.84
3072 3303 9.602568 GTCCTTAAGACTAAGAGGATAAAAAGG 57.397 37.037 3.36 0.00 42.69 3.11
3080 3311 7.110810 ACTAAGAGGATAAAAAGGCCACTAAC 58.889 38.462 5.01 0.00 0.00 2.34
3216 3448 8.400947 GTTGATTGTAGTTGTGATATGATGCTT 58.599 33.333 0.00 0.00 0.00 3.91
3240 3472 5.243730 TCATTGGCCCTTTTTCTTAGAAGTG 59.756 40.000 0.00 0.00 0.00 3.16
3343 3904 2.341846 TCTGTTTCCTGTGGTTGGAC 57.658 50.000 0.00 0.00 32.65 4.02
3539 4212 6.183361 TGCAGGTAGCTATGAGTGTTAATGAT 60.183 38.462 0.00 0.00 45.94 2.45
3628 4303 4.872691 CGATCTTGCAGAGAAGGTAATGTT 59.127 41.667 3.27 0.00 38.06 2.71
3661 4336 5.864474 TGTTCACTTAACGCAACATTTGTTT 59.136 32.000 0.00 0.00 41.30 2.83
3663 4338 5.641709 TCACTTAACGCAACATTTGTTTCA 58.358 33.333 0.00 0.00 35.83 2.69
3687 4366 2.876091 TGTAATCTTGTCTTCCGCTCG 58.124 47.619 0.00 0.00 0.00 5.03
3694 4375 0.039437 TGTCTTCCGCTCGTGAAGTC 60.039 55.000 15.03 12.00 40.10 3.01
3702 4383 1.399343 CGCTCGTGAAGTCGTGTCTAA 60.399 52.381 0.00 0.00 0.00 2.10
3823 4523 9.857656 TGAGATAAGCTTTTCTCCATAATGATT 57.142 29.630 31.49 5.74 38.05 2.57
3836 4536 5.691754 TCCATAATGATTTCGTCGAGTCATG 59.308 40.000 19.54 12.27 32.07 3.07
3846 4546 4.607955 TCGTCGAGTCATGTGAATTATCC 58.392 43.478 0.00 0.00 0.00 2.59
3880 4580 7.984391 TGAACATCAGTATAATTGCAACGATT 58.016 30.769 0.00 0.00 0.00 3.34
3881 4581 7.909641 TGAACATCAGTATAATTGCAACGATTG 59.090 33.333 0.00 0.00 0.00 2.67
3882 4582 7.320443 ACATCAGTATAATTGCAACGATTGT 57.680 32.000 0.00 0.00 0.00 2.71
3884 4584 8.335356 ACATCAGTATAATTGCAACGATTGTAC 58.665 33.333 0.00 5.70 33.72 2.90
3891 4600 5.779806 ATTGCAACGATTGTACTGAGTAC 57.220 39.130 15.57 15.57 39.24 2.73
3915 4625 7.899973 ACTTTTTATCTTTCTTGCATGGACAT 58.100 30.769 0.00 0.00 0.00 3.06
3953 4663 4.481368 ACCGTGATACTTCTTGCCATTA 57.519 40.909 0.00 0.00 0.00 1.90
4096 4816 1.482593 AGAGATGCCTGGTTTCTACGG 59.517 52.381 0.00 0.00 0.00 4.02
4223 4943 5.547276 TCCTTCAAATGGGGTTCATTCAAAT 59.453 36.000 0.00 0.00 44.68 2.32
4471 5228 2.791655 ACTCTCATGACACCGACTACA 58.208 47.619 0.00 0.00 0.00 2.74
4535 5293 9.654663 CCCGTATTTCCATGGTTTTATTTTTAA 57.345 29.630 12.58 0.00 0.00 1.52
5153 6505 9.856488 TGTACTTCTGTATCAACATCTTTAGTC 57.144 33.333 0.00 0.00 34.37 2.59
5177 6539 5.980698 TTACATCTTCGTACTAGAGACCG 57.019 43.478 0.00 0.00 0.00 4.79
5333 6703 1.329599 GAAACTGAAACTGTTCCGCGT 59.670 47.619 4.92 0.00 32.28 6.01
5408 6781 8.701895 TGTTATAAGCACATAAACTAGGCTACT 58.298 33.333 0.00 0.00 33.80 2.57
5409 6782 9.543783 GTTATAAGCACATAAACTAGGCTACTT 57.456 33.333 0.00 0.00 33.80 2.24
5481 6854 1.993653 CCCTCCAAGTGCATCAGGA 59.006 57.895 0.00 0.00 0.00 3.86
5491 6864 3.051581 AGTGCATCAGGACATTCCCTAT 58.948 45.455 0.00 0.00 37.19 2.57
5498 6902 3.973305 TCAGGACATTCCCTATGCATACA 59.027 43.478 1.16 0.00 37.19 2.29
5506 6910 3.374764 TCCCTATGCATACACACACTCT 58.625 45.455 1.16 0.00 0.00 3.24
5543 6947 4.526650 TCATGTGGTTAAGCAGTCAGACTA 59.473 41.667 7.79 0.00 0.00 2.59
5549 6953 6.426937 GTGGTTAAGCAGTCAGACTAAAATCA 59.573 38.462 7.79 0.00 0.00 2.57
5552 6956 7.173390 GGTTAAGCAGTCAGACTAAAATCAGTT 59.827 37.037 1.67 0.00 0.00 3.16
5594 6998 2.089201 TGATGGCAGCTTGTTCATCAG 58.911 47.619 3.69 0.00 40.41 2.90
5601 7005 3.442977 GCAGCTTGTTCATCAGAGGAATT 59.557 43.478 0.00 0.00 0.00 2.17
5659 7084 2.585330 TGTAGGTGTCGTACAAGTCCA 58.415 47.619 0.00 0.00 32.86 4.02
5660 7085 2.957680 TGTAGGTGTCGTACAAGTCCAA 59.042 45.455 0.00 0.00 32.86 3.53
5661 7086 2.814280 AGGTGTCGTACAAGTCCAAG 57.186 50.000 0.00 0.00 0.00 3.61
5662 7087 2.313317 AGGTGTCGTACAAGTCCAAGA 58.687 47.619 0.00 0.00 0.00 3.02
5663 7088 2.897969 AGGTGTCGTACAAGTCCAAGAT 59.102 45.455 0.00 0.00 0.00 2.40
5664 7089 3.323979 AGGTGTCGTACAAGTCCAAGATT 59.676 43.478 0.00 0.00 0.00 2.40
5665 7090 4.062991 GGTGTCGTACAAGTCCAAGATTT 58.937 43.478 0.00 0.00 0.00 2.17
5666 7091 4.151867 GGTGTCGTACAAGTCCAAGATTTC 59.848 45.833 0.00 0.00 0.00 2.17
5667 7092 4.151867 GTGTCGTACAAGTCCAAGATTTCC 59.848 45.833 0.00 0.00 0.00 3.13
5668 7093 4.202274 TGTCGTACAAGTCCAAGATTTCCA 60.202 41.667 0.00 0.00 0.00 3.53
5669 7094 4.935808 GTCGTACAAGTCCAAGATTTCCAT 59.064 41.667 0.00 0.00 0.00 3.41
5670 7095 6.103997 GTCGTACAAGTCCAAGATTTCCATA 58.896 40.000 0.00 0.00 0.00 2.74
5671 7096 6.255887 GTCGTACAAGTCCAAGATTTCCATAG 59.744 42.308 0.00 0.00 0.00 2.23
5672 7097 6.153851 TCGTACAAGTCCAAGATTTCCATAGA 59.846 38.462 0.00 0.00 0.00 1.98
5673 7098 6.816640 CGTACAAGTCCAAGATTTCCATAGAA 59.183 38.462 0.00 0.00 0.00 2.10
5674 7099 7.333423 CGTACAAGTCCAAGATTTCCATAGAAA 59.667 37.037 0.00 0.00 45.78 2.52
5722 7147 4.026804 CGAGTGCAAGTGGATTAATACGAC 60.027 45.833 0.00 0.00 0.00 4.34
5821 7246 1.617357 ACCAGGAAGTCGTGTCCTTAC 59.383 52.381 0.00 0.00 43.26 2.34
5832 7257 5.069516 AGTCGTGTCCTTACCTTTAAGAACA 59.930 40.000 0.00 0.00 37.49 3.18
5960 7419 7.012327 GTCTACTCAGCATAGAGATATAGCCAG 59.988 44.444 7.69 0.00 38.98 4.85
5961 7420 5.579047 ACTCAGCATAGAGATATAGCCAGT 58.421 41.667 7.69 0.00 38.98 4.00
5962 7421 6.015918 ACTCAGCATAGAGATATAGCCAGTT 58.984 40.000 7.69 0.00 38.98 3.16
5963 7422 6.071447 ACTCAGCATAGAGATATAGCCAGTTG 60.071 42.308 7.69 0.00 38.98 3.16
5964 7423 5.777223 TCAGCATAGAGATATAGCCAGTTGT 59.223 40.000 0.00 0.00 0.00 3.32
5965 7424 6.948309 TCAGCATAGAGATATAGCCAGTTGTA 59.052 38.462 0.00 0.00 0.00 2.41
5966 7425 7.617329 TCAGCATAGAGATATAGCCAGTTGTAT 59.383 37.037 0.00 0.00 0.00 2.29
5967 7426 8.907885 CAGCATAGAGATATAGCCAGTTGTATA 58.092 37.037 0.00 0.00 0.00 1.47
5968 7427 8.908903 AGCATAGAGATATAGCCAGTTGTATAC 58.091 37.037 0.00 0.00 0.00 1.47
5969 7428 8.138712 GCATAGAGATATAGCCAGTTGTATACC 58.861 40.741 0.00 0.00 0.00 2.73
5970 7429 8.634444 CATAGAGATATAGCCAGTTGTATACCC 58.366 40.741 0.00 0.00 0.00 3.69
5971 7430 6.562228 AGAGATATAGCCAGTTGTATACCCA 58.438 40.000 0.00 0.00 0.00 4.51
5972 7431 7.192628 AGAGATATAGCCAGTTGTATACCCAT 58.807 38.462 0.00 0.00 0.00 4.00
5973 7432 8.344546 AGAGATATAGCCAGTTGTATACCCATA 58.655 37.037 0.00 0.00 0.00 2.74
5974 7433 8.911018 AGATATAGCCAGTTGTATACCCATAA 57.089 34.615 0.00 0.00 0.00 1.90
5975 7434 9.333961 AGATATAGCCAGTTGTATACCCATAAA 57.666 33.333 0.00 0.00 0.00 1.40
5978 7437 6.260700 AGCCAGTTGTATACCCATAAATCA 57.739 37.500 0.00 0.00 0.00 2.57
5979 7438 6.852404 AGCCAGTTGTATACCCATAAATCAT 58.148 36.000 0.00 0.00 0.00 2.45
5980 7439 6.942576 AGCCAGTTGTATACCCATAAATCATC 59.057 38.462 0.00 0.00 0.00 2.92
5981 7440 6.942576 GCCAGTTGTATACCCATAAATCATCT 59.057 38.462 0.00 0.00 0.00 2.90
5982 7441 8.100791 GCCAGTTGTATACCCATAAATCATCTA 58.899 37.037 0.00 0.00 0.00 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
558 560 0.322546 GGATCGGGTTCTGCCACTTT 60.323 55.000 0.00 0.00 39.65 2.66
712 722 1.203025 AGTCCACCACCGTAGAGACTT 60.203 52.381 0.00 0.00 30.65 3.01
713 723 0.404812 AGTCCACCACCGTAGAGACT 59.595 55.000 0.00 0.00 0.00 3.24
714 724 2.015587 CTAGTCCACCACCGTAGAGAC 58.984 57.143 0.00 0.00 0.00 3.36
715 725 1.681166 GCTAGTCCACCACCGTAGAGA 60.681 57.143 0.00 0.00 0.00 3.10
716 726 0.739561 GCTAGTCCACCACCGTAGAG 59.260 60.000 0.00 0.00 0.00 2.43
717 727 0.682209 GGCTAGTCCACCACCGTAGA 60.682 60.000 0.00 0.00 34.01 2.59
718 728 1.814527 GGCTAGTCCACCACCGTAG 59.185 63.158 0.00 0.00 34.01 3.51
719 729 2.048023 CGGCTAGTCCACCACCGTA 61.048 63.158 0.00 0.00 39.05 4.02
720 730 3.379445 CGGCTAGTCCACCACCGT 61.379 66.667 0.00 0.00 39.05 4.83
721 731 4.814294 GCGGCTAGTCCACCACCG 62.814 72.222 0.00 0.00 46.50 4.94
722 732 4.468689 GGCGGCTAGTCCACCACC 62.469 72.222 0.00 0.00 37.01 4.61
723 733 4.814294 CGGCGGCTAGTCCACCAC 62.814 72.222 7.61 0.00 36.84 4.16
740 750 2.041115 GGTTTGCCTTCCTCTCGGC 61.041 63.158 0.00 0.00 46.46 5.54
741 751 1.377333 GGGTTTGCCTTCCTCTCGG 60.377 63.158 0.00 0.00 34.45 4.63
742 752 0.902531 TAGGGTTTGCCTTCCTCTCG 59.097 55.000 0.00 0.00 34.45 4.04
743 753 2.712709 GTTAGGGTTTGCCTTCCTCTC 58.287 52.381 0.00 0.00 34.45 3.20
744 754 1.003233 CGTTAGGGTTTGCCTTCCTCT 59.997 52.381 0.00 0.00 34.45 3.69
745 755 1.002773 TCGTTAGGGTTTGCCTTCCTC 59.997 52.381 0.00 0.00 34.45 3.71
746 756 1.003233 CTCGTTAGGGTTTGCCTTCCT 59.997 52.381 0.00 0.00 34.45 3.36
747 757 1.002773 TCTCGTTAGGGTTTGCCTTCC 59.997 52.381 0.00 0.00 34.45 3.46
748 758 2.347731 CTCTCGTTAGGGTTTGCCTTC 58.652 52.381 0.00 0.00 34.45 3.46
749 759 1.003233 CCTCTCGTTAGGGTTTGCCTT 59.997 52.381 0.00 0.00 32.55 4.35
750 760 0.613777 CCTCTCGTTAGGGTTTGCCT 59.386 55.000 0.00 0.00 32.55 4.75
751 761 3.154589 CCTCTCGTTAGGGTTTGCC 57.845 57.895 0.00 0.00 32.55 4.52
758 768 1.978454 ATACGTCCCCTCTCGTTAGG 58.022 55.000 0.00 0.00 40.70 2.69
759 769 4.142945 CGATTATACGTCCCCTCTCGTTAG 60.143 50.000 0.00 0.00 40.70 2.34
760 770 3.748048 CGATTATACGTCCCCTCTCGTTA 59.252 47.826 0.00 0.00 40.70 3.18
761 771 2.551459 CGATTATACGTCCCCTCTCGTT 59.449 50.000 0.00 0.00 40.70 3.85
762 772 2.149578 CGATTATACGTCCCCTCTCGT 58.850 52.381 0.00 0.00 42.82 4.18
763 773 2.159234 GTCGATTATACGTCCCCTCTCG 59.841 54.545 0.00 0.00 34.70 4.04
764 774 2.159234 CGTCGATTATACGTCCCCTCTC 59.841 54.545 0.00 0.00 35.66 3.20
765 775 2.149578 CGTCGATTATACGTCCCCTCT 58.850 52.381 0.00 0.00 35.66 3.69
766 776 1.198637 CCGTCGATTATACGTCCCCTC 59.801 57.143 0.00 0.00 38.67 4.30
767 777 1.242076 CCGTCGATTATACGTCCCCT 58.758 55.000 0.00 0.00 38.67 4.79
768 778 0.387750 GCCGTCGATTATACGTCCCC 60.388 60.000 0.00 0.00 38.67 4.81
769 779 0.727122 CGCCGTCGATTATACGTCCC 60.727 60.000 0.00 0.00 38.67 4.46
770 780 1.332882 GCGCCGTCGATTATACGTCC 61.333 60.000 0.00 0.00 38.67 4.79
771 781 0.385223 AGCGCCGTCGATTATACGTC 60.385 55.000 2.29 0.00 38.67 4.34
772 782 0.659417 CAGCGCCGTCGATTATACGT 60.659 55.000 2.29 0.00 38.67 3.57
773 783 1.930816 GCAGCGCCGTCGATTATACG 61.931 60.000 2.29 0.00 40.01 3.06
774 784 0.937699 TGCAGCGCCGTCGATTATAC 60.938 55.000 2.29 0.00 38.10 1.47
775 785 0.038618 ATGCAGCGCCGTCGATTATA 60.039 50.000 2.29 0.00 38.10 0.98
776 786 0.880278 AATGCAGCGCCGTCGATTAT 60.880 50.000 2.29 0.00 38.10 1.28
777 787 1.087202 AAATGCAGCGCCGTCGATTA 61.087 50.000 2.29 0.00 38.10 1.75
778 788 2.398554 AAATGCAGCGCCGTCGATT 61.399 52.632 2.29 0.00 38.10 3.34
779 789 2.819595 AAATGCAGCGCCGTCGAT 60.820 55.556 2.29 0.00 38.10 3.59
780 790 3.787676 CAAATGCAGCGCCGTCGA 61.788 61.111 2.29 0.00 38.10 4.20
861 871 0.533032 GAAAGAGTAGGCTGCGAGGT 59.467 55.000 0.00 0.00 0.00 3.85
890 900 5.486735 TTTCCAGCCAAAATTGATGACAT 57.513 34.783 0.00 0.00 0.00 3.06
917 927 7.714703 AGAGAATATAAACTGGACGACTTACC 58.285 38.462 0.00 0.00 0.00 2.85
1125 1189 4.792804 GTGGAGCTGGAGCAGGCC 62.793 72.222 0.00 0.00 45.16 5.19
1126 1190 4.792804 GGTGGAGCTGGAGCAGGC 62.793 72.222 0.00 0.00 45.16 4.85
1127 1191 4.463879 CGGTGGAGCTGGAGCAGG 62.464 72.222 0.00 0.00 45.16 4.85
1128 1192 3.368190 CTCGGTGGAGCTGGAGCAG 62.368 68.421 0.00 0.00 45.16 4.24
1129 1193 3.385384 CTCGGTGGAGCTGGAGCA 61.385 66.667 0.00 0.00 45.16 4.26
1130 1194 4.154347 CCTCGGTGGAGCTGGAGC 62.154 72.222 0.00 0.00 39.06 4.70
1131 1195 2.363018 TCCTCGGTGGAGCTGGAG 60.363 66.667 0.00 0.00 40.56 3.86
1138 1202 2.680352 GCTGTCCTCCTCGGTGGA 60.680 66.667 2.71 2.71 43.86 4.02
1139 1203 2.362369 ATGCTGTCCTCCTCGGTGG 61.362 63.158 0.00 0.00 37.10 4.61
1140 1204 1.153489 CATGCTGTCCTCCTCGGTG 60.153 63.158 0.00 0.00 0.00 4.94
1141 1205 1.305297 TCATGCTGTCCTCCTCGGT 60.305 57.895 0.00 0.00 0.00 4.69
1142 1206 1.142748 GTCATGCTGTCCTCCTCGG 59.857 63.158 0.00 0.00 0.00 4.63
1143 1207 0.534412 AAGTCATGCTGTCCTCCTCG 59.466 55.000 0.00 0.00 0.00 4.63
1144 1208 2.497675 TGTAAGTCATGCTGTCCTCCTC 59.502 50.000 0.00 0.00 0.00 3.71
1145 1209 2.540383 TGTAAGTCATGCTGTCCTCCT 58.460 47.619 0.00 0.00 0.00 3.69
1146 1210 3.265791 CTTGTAAGTCATGCTGTCCTCC 58.734 50.000 0.00 0.00 0.00 4.30
1147 1211 3.265791 CCTTGTAAGTCATGCTGTCCTC 58.734 50.000 0.00 0.00 0.00 3.71
1148 1212 2.026822 CCCTTGTAAGTCATGCTGTCCT 60.027 50.000 0.00 0.00 0.00 3.85
1149 1213 2.359900 CCCTTGTAAGTCATGCTGTCC 58.640 52.381 0.00 0.00 0.00 4.02
1150 1214 1.740025 GCCCTTGTAAGTCATGCTGTC 59.260 52.381 0.00 0.00 0.00 3.51
1151 1215 1.826385 GCCCTTGTAAGTCATGCTGT 58.174 50.000 0.00 0.00 0.00 4.40
1152 1216 0.729116 CGCCCTTGTAAGTCATGCTG 59.271 55.000 0.00 0.00 0.00 4.41
1153 1217 1.026718 GCGCCCTTGTAAGTCATGCT 61.027 55.000 0.00 0.00 0.00 3.79
1154 1218 1.429423 GCGCCCTTGTAAGTCATGC 59.571 57.895 0.00 0.00 0.00 4.06
1155 1219 1.705337 CGGCGCCCTTGTAAGTCATG 61.705 60.000 23.46 0.00 0.00 3.07
1156 1220 1.449601 CGGCGCCCTTGTAAGTCAT 60.450 57.895 23.46 0.00 0.00 3.06
1157 1221 2.047655 CGGCGCCCTTGTAAGTCA 60.048 61.111 23.46 0.00 0.00 3.41
1158 1222 2.818274 CCGGCGCCCTTGTAAGTC 60.818 66.667 23.46 0.00 0.00 3.01
1159 1223 3.633116 ACCGGCGCCCTTGTAAGT 61.633 61.111 23.46 3.98 0.00 2.24
1160 1224 3.124921 CACCGGCGCCCTTGTAAG 61.125 66.667 23.46 4.25 0.00 2.34
1161 1225 3.943691 ACACCGGCGCCCTTGTAA 61.944 61.111 23.46 0.00 0.00 2.41
1162 1226 4.690719 CACACCGGCGCCCTTGTA 62.691 66.667 23.42 0.00 0.00 2.41
1175 1239 4.341783 AGCTGGAGCAGGCCACAC 62.342 66.667 5.01 0.00 45.16 3.82
1176 1240 4.025858 GAGCTGGAGCAGGCCACA 62.026 66.667 5.01 0.00 45.16 4.17
1177 1241 4.792804 GGAGCTGGAGCAGGCCAC 62.793 72.222 5.01 0.00 45.16 5.01
1206 1270 1.705337 CGCCCTTGTAAGTCATGCCG 61.705 60.000 0.00 0.00 0.00 5.69
1463 1544 1.070289 GAGGACCAAAAGGACGTGACT 59.930 52.381 0.00 0.00 0.00 3.41
1578 1723 2.032302 TGCAAATTAACGCACACGAACT 59.968 40.909 0.00 0.00 43.93 3.01
1579 1724 2.376956 TGCAAATTAACGCACACGAAC 58.623 42.857 0.00 0.00 43.93 3.95
1580 1725 2.288186 TCTGCAAATTAACGCACACGAA 59.712 40.909 0.00 0.00 43.93 3.85
1581 1726 1.867865 TCTGCAAATTAACGCACACGA 59.132 42.857 0.00 0.00 43.93 4.35
1585 1730 2.245096 CAGCTCTGCAAATTAACGCAC 58.755 47.619 0.00 0.00 33.75 5.34
1586 1731 1.879380 ACAGCTCTGCAAATTAACGCA 59.121 42.857 0.00 0.00 36.52 5.24
1587 1732 2.619013 ACAGCTCTGCAAATTAACGC 57.381 45.000 0.00 0.00 0.00 4.84
1588 1733 3.599514 CGAAACAGCTCTGCAAATTAACG 59.400 43.478 0.00 0.00 0.00 3.18
1589 1734 4.537015 ACGAAACAGCTCTGCAAATTAAC 58.463 39.130 0.00 0.00 0.00 2.01
1591 1736 4.274705 TGAACGAAACAGCTCTGCAAATTA 59.725 37.500 0.00 0.00 0.00 1.40
1592 1737 3.066621 TGAACGAAACAGCTCTGCAAATT 59.933 39.130 0.00 0.00 0.00 1.82
1593 1738 2.618241 TGAACGAAACAGCTCTGCAAAT 59.382 40.909 0.00 0.00 0.00 2.32
1594 1739 2.013400 TGAACGAAACAGCTCTGCAAA 58.987 42.857 0.00 0.00 0.00 3.68
1595 1740 1.599071 CTGAACGAAACAGCTCTGCAA 59.401 47.619 0.00 0.00 0.00 4.08
1596 1741 1.220529 CTGAACGAAACAGCTCTGCA 58.779 50.000 0.00 0.00 0.00 4.41
1597 1742 1.221414 ACTGAACGAAACAGCTCTGC 58.779 50.000 0.00 0.00 38.74 4.26
1599 1744 2.484889 GGAACTGAACGAAACAGCTCT 58.515 47.619 0.00 0.00 38.74 4.09
1600 1745 1.192534 CGGAACTGAACGAAACAGCTC 59.807 52.381 0.00 0.00 38.74 4.09
1601 1746 1.217882 CGGAACTGAACGAAACAGCT 58.782 50.000 0.00 0.00 38.74 4.24
1602 1747 0.935196 ACGGAACTGAACGAAACAGC 59.065 50.000 0.00 0.00 38.74 4.40
1603 1748 2.198406 TCACGGAACTGAACGAAACAG 58.802 47.619 0.00 0.00 40.68 3.16
1604 1749 2.198406 CTCACGGAACTGAACGAAACA 58.802 47.619 0.00 0.00 0.00 2.83
1605 1750 1.525619 CCTCACGGAACTGAACGAAAC 59.474 52.381 0.00 0.00 0.00 2.78
1606 1751 1.137479 ACCTCACGGAACTGAACGAAA 59.863 47.619 0.00 0.00 0.00 3.46
1607 1752 0.748450 ACCTCACGGAACTGAACGAA 59.252 50.000 0.00 0.00 0.00 3.85
1608 1753 0.313043 GACCTCACGGAACTGAACGA 59.687 55.000 0.00 0.00 0.00 3.85
1609 1754 0.314302 AGACCTCACGGAACTGAACG 59.686 55.000 0.00 0.00 0.00 3.95
1610 1755 2.135933 CAAGACCTCACGGAACTGAAC 58.864 52.381 0.00 0.00 0.00 3.18
1611 1756 2.036387 TCAAGACCTCACGGAACTGAA 58.964 47.619 0.00 0.00 0.00 3.02
1612 1757 1.340248 GTCAAGACCTCACGGAACTGA 59.660 52.381 0.00 0.00 0.00 3.41
1613 1758 1.341531 AGTCAAGACCTCACGGAACTG 59.658 52.381 0.00 0.00 0.00 3.16
1614 1759 1.614413 GAGTCAAGACCTCACGGAACT 59.386 52.381 0.00 0.00 0.00 3.01
1615 1760 1.614413 AGAGTCAAGACCTCACGGAAC 59.386 52.381 0.00 0.00 0.00 3.62
1616 1761 1.996798 AGAGTCAAGACCTCACGGAA 58.003 50.000 0.00 0.00 0.00 4.30
1617 1762 1.996798 AAGAGTCAAGACCTCACGGA 58.003 50.000 0.00 0.00 0.00 4.69
1618 1763 2.224066 ACAAAGAGTCAAGACCTCACGG 60.224 50.000 0.00 0.00 0.00 4.94
1619 1764 3.099267 ACAAAGAGTCAAGACCTCACG 57.901 47.619 0.00 0.00 0.00 4.35
1620 1765 3.002759 GCAACAAAGAGTCAAGACCTCAC 59.997 47.826 0.00 0.00 0.00 3.51
1621 1766 3.118261 AGCAACAAAGAGTCAAGACCTCA 60.118 43.478 0.00 0.00 0.00 3.86
1622 1767 3.471680 AGCAACAAAGAGTCAAGACCTC 58.528 45.455 0.00 0.00 0.00 3.85
1623 1768 3.471680 GAGCAACAAAGAGTCAAGACCT 58.528 45.455 0.00 0.00 0.00 3.85
1624 1769 2.550180 GGAGCAACAAAGAGTCAAGACC 59.450 50.000 0.00 0.00 0.00 3.85
1625 1770 2.221981 CGGAGCAACAAAGAGTCAAGAC 59.778 50.000 0.00 0.00 0.00 3.01
1626 1771 2.483876 CGGAGCAACAAAGAGTCAAGA 58.516 47.619 0.00 0.00 0.00 3.02
1627 1772 2.957576 CGGAGCAACAAAGAGTCAAG 57.042 50.000 0.00 0.00 0.00 3.02
1642 1787 1.712977 GCTTGAGCTGAATGGCGGAG 61.713 60.000 0.00 0.00 38.21 4.63
1643 1788 1.746615 GCTTGAGCTGAATGGCGGA 60.747 57.895 0.00 0.00 38.21 5.54
1644 1789 2.796651 GCTTGAGCTGAATGGCGG 59.203 61.111 0.00 0.00 38.21 6.13
1645 1790 2.393768 ACGCTTGAGCTGAATGGCG 61.394 57.895 15.91 15.91 46.47 5.69
1646 1791 1.136147 CACGCTTGAGCTGAATGGC 59.864 57.895 0.00 0.00 39.32 4.40
1647 1792 1.798735 CCACGCTTGAGCTGAATGG 59.201 57.895 0.00 0.00 39.32 3.16
1648 1793 1.136147 GCCACGCTTGAGCTGAATG 59.864 57.895 0.00 0.00 39.32 2.67
1649 1794 2.393768 CGCCACGCTTGAGCTGAAT 61.394 57.895 0.00 0.00 39.32 2.57
1650 1795 3.043713 CGCCACGCTTGAGCTGAA 61.044 61.111 0.00 0.00 39.32 3.02
1666 1811 1.210155 GGCTTACTTGTGCAAGGCG 59.790 57.895 15.31 5.31 42.53 5.52
1668 1813 0.238289 CGTGGCTTACTTGTGCAAGG 59.762 55.000 15.31 0.59 42.53 3.61
1671 1816 1.098129 TTGCGTGGCTTACTTGTGCA 61.098 50.000 0.00 0.00 0.00 4.57
1672 1817 0.385974 CTTGCGTGGCTTACTTGTGC 60.386 55.000 0.00 0.00 0.00 4.57
1674 1819 0.107831 TCCTTGCGTGGCTTACTTGT 59.892 50.000 0.00 0.00 0.00 3.16
1675 1820 1.131126 CATCCTTGCGTGGCTTACTTG 59.869 52.381 0.00 0.00 0.00 3.16
1676 1821 1.271379 ACATCCTTGCGTGGCTTACTT 60.271 47.619 0.00 0.00 0.00 2.24
1677 1822 0.324943 ACATCCTTGCGTGGCTTACT 59.675 50.000 0.00 0.00 0.00 2.24
1678 1823 2.018542 TACATCCTTGCGTGGCTTAC 57.981 50.000 0.00 0.00 0.00 2.34
1679 1824 2.169561 TGATACATCCTTGCGTGGCTTA 59.830 45.455 0.00 0.00 0.00 3.09
1680 1825 1.065491 TGATACATCCTTGCGTGGCTT 60.065 47.619 0.00 0.00 0.00 4.35
1681 1826 0.541392 TGATACATCCTTGCGTGGCT 59.459 50.000 0.00 0.00 0.00 4.75
1682 1827 0.940126 CTGATACATCCTTGCGTGGC 59.060 55.000 0.00 0.00 0.00 5.01
1683 1828 1.935873 CACTGATACATCCTTGCGTGG 59.064 52.381 0.00 0.00 0.00 4.94
1684 1829 1.935873 CCACTGATACATCCTTGCGTG 59.064 52.381 0.00 0.00 0.00 5.34
1685 1830 1.743772 GCCACTGATACATCCTTGCGT 60.744 52.381 0.00 0.00 0.00 5.24
1686 1831 0.940126 GCCACTGATACATCCTTGCG 59.060 55.000 0.00 0.00 0.00 4.85
1687 1832 2.042686 TGCCACTGATACATCCTTGC 57.957 50.000 0.00 0.00 0.00 4.01
1689 1834 4.265073 GTCTTTGCCACTGATACATCCTT 58.735 43.478 0.00 0.00 0.00 3.36
1690 1835 3.679917 CGTCTTTGCCACTGATACATCCT 60.680 47.826 0.00 0.00 0.00 3.24
1691 1836 2.609459 CGTCTTTGCCACTGATACATCC 59.391 50.000 0.00 0.00 0.00 3.51
1693 1838 2.632377 CCGTCTTTGCCACTGATACAT 58.368 47.619 0.00 0.00 0.00 2.29
1694 1839 1.338674 CCCGTCTTTGCCACTGATACA 60.339 52.381 0.00 0.00 0.00 2.29
1695 1840 1.369625 CCCGTCTTTGCCACTGATAC 58.630 55.000 0.00 0.00 0.00 2.24
1697 1842 1.002134 CCCCGTCTTTGCCACTGAT 60.002 57.895 0.00 0.00 0.00 2.90
1698 1843 2.144078 TCCCCGTCTTTGCCACTGA 61.144 57.895 0.00 0.00 0.00 3.41
1699 1844 1.966451 GTCCCCGTCTTTGCCACTG 60.966 63.158 0.00 0.00 0.00 3.66
1700 1845 2.113243 GAGTCCCCGTCTTTGCCACT 62.113 60.000 0.00 0.00 0.00 4.00
1701 1846 1.671379 GAGTCCCCGTCTTTGCCAC 60.671 63.158 0.00 0.00 0.00 5.01
1702 1847 2.747686 GAGTCCCCGTCTTTGCCA 59.252 61.111 0.00 0.00 0.00 4.92
1703 1848 2.240162 ATCGAGTCCCCGTCTTTGCC 62.240 60.000 0.00 0.00 0.00 4.52
1707 1852 1.000019 TCCATCGAGTCCCCGTCTT 60.000 57.895 0.00 0.00 0.00 3.01
1708 1853 1.454111 CTCCATCGAGTCCCCGTCT 60.454 63.158 0.00 0.00 0.00 4.18
1709 1854 2.491022 CCTCCATCGAGTCCCCGTC 61.491 68.421 0.00 0.00 33.93 4.79
1711 1856 3.917760 GCCTCCATCGAGTCCCCG 61.918 72.222 0.00 0.00 33.93 5.73
1712 1857 1.700042 AATGCCTCCATCGAGTCCCC 61.700 60.000 0.00 0.00 33.93 4.81
1714 1859 1.303309 CAAATGCCTCCATCGAGTCC 58.697 55.000 0.00 0.00 33.93 3.85
1715 1860 1.936547 GACAAATGCCTCCATCGAGTC 59.063 52.381 0.00 0.00 33.93 3.36
1716 1861 1.740380 CGACAAATGCCTCCATCGAGT 60.740 52.381 0.00 0.00 33.93 4.18
1718 1863 0.534873 TCGACAAATGCCTCCATCGA 59.465 50.000 0.00 0.00 0.00 3.59
1719 1864 0.933097 CTCGACAAATGCCTCCATCG 59.067 55.000 0.00 0.00 0.00 3.84
1720 1865 1.134401 TCCTCGACAAATGCCTCCATC 60.134 52.381 0.00 0.00 0.00 3.51
1722 1867 0.250234 CTCCTCGACAAATGCCTCCA 59.750 55.000 0.00 0.00 0.00 3.86
1725 1870 1.201429 ACCCTCCTCGACAAATGCCT 61.201 55.000 0.00 0.00 0.00 4.75
1726 1871 1.026718 CACCCTCCTCGACAAATGCC 61.027 60.000 0.00 0.00 0.00 4.40
1727 1872 0.321653 ACACCCTCCTCGACAAATGC 60.322 55.000 0.00 0.00 0.00 3.56
1728 1873 1.726853 GACACCCTCCTCGACAAATG 58.273 55.000 0.00 0.00 0.00 2.32
1729 1874 0.246635 CGACACCCTCCTCGACAAAT 59.753 55.000 0.00 0.00 31.24 2.32
1730 1875 0.824595 TCGACACCCTCCTCGACAAA 60.825 55.000 0.00 0.00 34.04 2.83
1731 1876 0.611062 ATCGACACCCTCCTCGACAA 60.611 55.000 0.00 0.00 41.50 3.18
1732 1877 1.001269 ATCGACACCCTCCTCGACA 60.001 57.895 0.00 0.00 41.50 4.35
1733 1878 1.433879 CATCGACACCCTCCTCGAC 59.566 63.158 0.00 0.00 41.50 4.20
1734 1879 2.415608 GCATCGACACCCTCCTCGA 61.416 63.158 0.00 0.00 42.79 4.04
1735 1880 2.105128 GCATCGACACCCTCCTCG 59.895 66.667 0.00 0.00 0.00 4.63
1736 1881 2.501610 GGCATCGACACCCTCCTC 59.498 66.667 0.00 0.00 0.00 3.71
1737 1882 3.461773 CGGCATCGACACCCTCCT 61.462 66.667 0.00 0.00 39.00 3.69
1738 1883 2.907897 CTTCGGCATCGACACCCTCC 62.908 65.000 0.00 0.00 45.92 4.30
1739 1884 1.519455 CTTCGGCATCGACACCCTC 60.519 63.158 0.00 0.00 45.92 4.30
1740 1885 2.579201 CTTCGGCATCGACACCCT 59.421 61.111 0.00 0.00 45.92 4.34
1741 1886 3.195698 GCTTCGGCATCGACACCC 61.196 66.667 0.00 0.00 45.92 4.61
1784 1929 1.541588 GAAAACCCTGTGTGGCTCATC 59.458 52.381 0.00 0.00 0.00 2.92
1797 1942 1.961394 GTCCTTGGACTTGGAAAACCC 59.039 52.381 12.20 0.00 33.72 4.11
1818 1963 1.674651 GAAACTTCCTCCCGGCCAC 60.675 63.158 2.24 0.00 0.00 5.01
1842 1987 2.941333 CTCAGTGGCTGCAACACG 59.059 61.111 10.27 0.00 43.41 4.49
1856 2001 2.099263 GGTACTCTTCTATGCACGCTCA 59.901 50.000 0.00 0.00 0.00 4.26
1863 2008 6.109359 AGTTTGTGATGGTACTCTTCTATGC 58.891 40.000 0.00 0.00 0.00 3.14
1896 2041 4.517453 CCTCCTCTACTAATCTCTCCAACG 59.483 50.000 0.00 0.00 0.00 4.10
1940 2085 4.735132 TCCTTTCGCCGCTCCACG 62.735 66.667 0.00 0.00 43.15 4.94
1993 2141 3.886505 CCTCATCCCTGACTAGTGACTAC 59.113 52.174 0.00 0.00 0.00 2.73
1996 2144 2.428890 CACCTCATCCCTGACTAGTGAC 59.571 54.545 0.00 0.00 29.42 3.67
2016 2164 4.055360 CAACTTAATCGCCGGTATCATCA 58.945 43.478 1.90 0.00 0.00 3.07
2026 2174 2.739913 TGTGCACTACAACTTAATCGCC 59.260 45.455 19.41 0.00 36.06 5.54
2032 2180 5.270893 TCTTCTGTGTGCACTACAACTTA 57.729 39.130 19.41 4.69 41.89 2.24
2063 2217 2.238646 AGGATGTTATTGGTTCCGCTGA 59.761 45.455 0.00 0.00 33.35 4.26
2064 2218 2.643551 AGGATGTTATTGGTTCCGCTG 58.356 47.619 0.00 0.00 33.35 5.18
2065 2219 4.497291 TTAGGATGTTATTGGTTCCGCT 57.503 40.909 0.00 0.00 33.35 5.52
2066 2220 4.638865 ACTTTAGGATGTTATTGGTTCCGC 59.361 41.667 0.00 0.00 33.35 5.54
2076 2230 4.339748 TGCATTGCCACTTTAGGATGTTA 58.660 39.130 6.12 0.00 0.00 2.41
2113 2267 2.434185 CGTGTACAGCCGGCATGT 60.434 61.111 31.54 28.72 34.62 3.21
2153 2307 3.979101 TCATCATGCTGTTGGAGTGTA 57.021 42.857 0.00 0.00 0.00 2.90
2154 2308 2.865119 TCATCATGCTGTTGGAGTGT 57.135 45.000 0.00 0.00 0.00 3.55
2236 2392 3.234630 TTCTCCCCGCACGTGAAGG 62.235 63.158 22.23 20.67 0.00 3.46
2241 2397 1.597027 CTTTGTTCTCCCCGCACGT 60.597 57.895 0.00 0.00 0.00 4.49
2244 2400 0.690192 TCATCTTTGTTCTCCCCGCA 59.310 50.000 0.00 0.00 0.00 5.69
2351 2513 9.369904 GTACCCGTTGTCAAAGTATATTTCTAA 57.630 33.333 0.00 0.00 0.00 2.10
2360 2522 2.437200 CGGTACCCGTTGTCAAAGTA 57.563 50.000 6.25 0.00 42.73 2.24
2372 2534 1.611474 GGTCTTGGTCCTCGGTACCC 61.611 65.000 6.25 0.00 36.06 3.69
2389 2551 2.193536 GGGCTGCAACTTTGACGGT 61.194 57.895 0.50 0.00 0.00 4.83
2409 2571 0.895100 GGCTGCTGATGTGTTTCCCA 60.895 55.000 0.00 0.00 0.00 4.37
2486 2648 3.001070 CGATCTAATCAACCGAACACACG 60.001 47.826 0.00 0.00 0.00 4.49
2543 2707 0.109153 TCATCCGCAATAGCAGCCAT 59.891 50.000 0.00 0.00 42.27 4.40
2544 2708 0.109153 ATCATCCGCAATAGCAGCCA 59.891 50.000 0.00 0.00 42.27 4.75
2545 2709 0.520404 CATCATCCGCAATAGCAGCC 59.480 55.000 0.00 0.00 42.27 4.85
2546 2710 0.109873 GCATCATCCGCAATAGCAGC 60.110 55.000 0.00 0.00 42.27 5.25
2547 2711 0.520404 GGCATCATCCGCAATAGCAG 59.480 55.000 0.00 0.00 42.27 4.24
2587 2751 2.228103 TCGTGACAGCTTCGACTACATT 59.772 45.455 0.00 0.00 0.00 2.71
2588 2752 1.810755 TCGTGACAGCTTCGACTACAT 59.189 47.619 0.00 0.00 0.00 2.29
2592 2756 0.179187 CGATCGTGACAGCTTCGACT 60.179 55.000 7.03 0.00 36.46 4.18
2601 2765 2.654289 CCACCACCGATCGTGACA 59.346 61.111 15.09 0.00 46.20 3.58
2631 2801 2.594013 TGCGCCTTGTGCATCACA 60.594 55.556 4.18 0.00 44.36 3.58
2648 2818 4.495184 CGTTGTAGTTGGCTTCTTTCGTTT 60.495 41.667 0.00 0.00 0.00 3.60
2668 2838 2.026822 AGAAGGGATGTCTTCATGCGTT 60.027 45.455 7.20 7.20 46.96 4.84
2688 2858 2.476619 GTCAAGTTCGGATGTGTCACAG 59.523 50.000 12.03 0.00 0.00 3.66
2702 2902 3.734231 CGTCACGAACTATGTGTCAAGTT 59.266 43.478 0.00 0.00 38.62 2.66
2746 2963 1.803922 TACTTGCACATCGGCGTCG 60.804 57.895 1.15 1.15 36.28 5.12
2747 2964 1.011968 TGTACTTGCACATCGGCGTC 61.012 55.000 6.85 0.00 36.28 5.19
2748 2965 1.005512 TGTACTTGCACATCGGCGT 60.006 52.632 6.85 0.00 36.28 5.68
2749 2966 1.695893 CCTGTACTTGCACATCGGCG 61.696 60.000 0.00 0.00 36.28 6.46
2751 2968 0.673333 TGCCTGTACTTGCACATCGG 60.673 55.000 5.88 0.00 31.31 4.18
2754 2971 2.362736 CTCATGCCTGTACTTGCACAT 58.637 47.619 11.26 0.00 40.88 3.21
2755 2972 1.611410 CCTCATGCCTGTACTTGCACA 60.611 52.381 11.26 2.42 40.88 4.57
2756 2973 1.089920 CCTCATGCCTGTACTTGCAC 58.910 55.000 11.26 0.00 40.88 4.57
2757 2974 0.677731 GCCTCATGCCTGTACTTGCA 60.678 55.000 11.40 11.40 42.52 4.08
2758 2975 2.101700 GCCTCATGCCTGTACTTGC 58.898 57.895 0.00 0.00 0.00 4.01
2944 3173 7.297936 TCGCAATATCTTAACCTAGATCCAA 57.702 36.000 0.00 0.00 36.34 3.53
2957 3186 7.040494 CCTCTATCATGACATCGCAATATCTT 58.960 38.462 0.00 0.00 0.00 2.40
2970 3200 7.814107 GTCTCAATTCTCATCCTCTATCATGAC 59.186 40.741 0.00 0.00 0.00 3.06
3027 3257 4.350225 AGGACCTCTACATATACTCGTCCA 59.650 45.833 0.00 0.00 40.82 4.02
3072 3303 9.965824 AATTGTTTGCATATTATAGTTAGTGGC 57.034 29.630 0.00 0.00 0.00 5.01
3143 3374 7.378995 CGCTAACCACATATCTGTTAGAGTTAC 59.621 40.741 15.02 2.37 42.47 2.50
3166 3398 0.520404 CAATGCTCTCTTTGCACGCT 59.480 50.000 0.00 0.00 43.59 5.07
3216 3448 5.243730 CACTTCTAAGAAAAAGGGCCAATGA 59.756 40.000 6.18 0.00 0.00 2.57
3266 3498 7.308589 CCCAACCTGAGTAAACAAGAAATACAG 60.309 40.741 0.00 0.00 0.00 2.74
3343 3904 5.738909 ACAAGGTATTCATCCTCTGTTCAG 58.261 41.667 0.00 0.00 33.76 3.02
3539 4212 3.552132 TTTGCGCCTGATGTTAGGATA 57.448 42.857 4.18 0.00 40.42 2.59
3628 4303 3.426426 GCGTTAAGTGAACAACAACACCA 60.426 43.478 0.00 0.00 37.99 4.17
3661 4336 6.582636 AGCGGAAGACAAGATTACAATATGA 58.417 36.000 0.00 0.00 0.00 2.15
3663 4338 5.692204 CGAGCGGAAGACAAGATTACAATAT 59.308 40.000 0.00 0.00 0.00 1.28
3740 4435 3.289836 TGATTGTTCGCATCCATCCAAT 58.710 40.909 0.00 0.00 0.00 3.16
3741 4436 2.684374 CTGATTGTTCGCATCCATCCAA 59.316 45.455 0.00 0.00 0.00 3.53
3823 4523 5.041287 GGATAATTCACATGACTCGACGAA 58.959 41.667 0.00 0.00 0.00 3.85
3882 4582 9.772973 TGCAAGAAAGATAAAAAGTACTCAGTA 57.227 29.630 0.00 0.00 0.00 2.74
3884 4584 9.552114 CATGCAAGAAAGATAAAAAGTACTCAG 57.448 33.333 0.00 0.00 0.00 3.35
3886 4586 8.730680 TCCATGCAAGAAAGATAAAAAGTACTC 58.269 33.333 0.00 0.00 0.00 2.59
3887 4587 8.515414 GTCCATGCAAGAAAGATAAAAAGTACT 58.485 33.333 0.00 0.00 0.00 2.73
4096 4816 5.280215 CCACCTAGATCATATTCACCTTCCC 60.280 48.000 0.00 0.00 0.00 3.97
4223 4943 3.090037 CCTTCTAACGAGAGAGAACCCA 58.910 50.000 0.00 0.00 31.77 4.51
4535 5293 9.458374 CAACATTATTGAGTTAAACTTTCGGTT 57.542 29.630 0.00 0.00 40.28 4.44
4817 5863 9.471084 CTTCAATTTTTCCAACCTATAAACGTT 57.529 29.630 0.00 0.00 0.00 3.99
5127 6479 9.856488 GACTAAAGATGTTGATACAGAAGTACA 57.144 33.333 0.00 0.00 37.77 2.90
5152 6504 6.257411 CGGTCTCTAGTACGAAGATGTAAAGA 59.743 42.308 0.00 0.00 0.00 2.52
5153 6505 6.036953 ACGGTCTCTAGTACGAAGATGTAAAG 59.963 42.308 0.00 0.00 0.00 1.85
5154 6506 5.877012 ACGGTCTCTAGTACGAAGATGTAAA 59.123 40.000 0.00 0.00 0.00 2.01
5156 6508 4.807834 CACGGTCTCTAGTACGAAGATGTA 59.192 45.833 0.00 0.00 0.00 2.29
5158 6510 3.622163 ACACGGTCTCTAGTACGAAGATG 59.378 47.826 0.00 0.97 0.00 2.90
5161 6523 3.062369 CAGACACGGTCTCTAGTACGAAG 59.938 52.174 3.87 0.00 41.37 3.79
5177 6539 3.715628 AAAACCATGACAAGCAGACAC 57.284 42.857 0.00 0.00 0.00 3.67
5333 6703 8.548877 AGCTTCTGTATCTTAAAATACCCAAGA 58.451 33.333 9.58 0.00 32.21 3.02
5408 6781 2.278657 TGGTGATCCCCATGGTAGAA 57.721 50.000 11.73 0.00 0.00 2.10
5409 6782 2.338809 GATGGTGATCCCCATGGTAGA 58.661 52.381 15.07 7.63 45.31 2.59
5481 6854 4.080356 AGTGTGTGTATGCATAGGGAATGT 60.080 41.667 6.67 0.00 37.93 2.71
5491 6864 4.864704 TTGACTAGAGTGTGTGTATGCA 57.135 40.909 0.00 0.00 0.00 3.96
5498 6902 3.068307 ACGCTTCTTTGACTAGAGTGTGT 59.932 43.478 0.00 0.00 0.00 3.72
5506 6910 3.244078 ACCACATGACGCTTCTTTGACTA 60.244 43.478 0.00 0.00 0.00 2.59
5549 6953 6.072199 AGGCCTGAAATCAGATTTAGAACT 57.928 37.500 3.11 1.87 46.59 3.01
5552 6956 6.484288 TCAAAGGCCTGAAATCAGATTTAGA 58.516 36.000 5.69 0.00 46.59 2.10
5582 6986 7.066766 ACAAGATAATTCCTCTGATGAACAAGC 59.933 37.037 0.00 0.00 0.00 4.01
5615 7019 3.655972 TTGATCCTAATAGGGGCCTCT 57.344 47.619 11.71 11.71 35.59 3.69
5670 7095 9.182214 TGCAAATCTCAGCTTAAGAATATTTCT 57.818 29.630 6.67 0.00 43.15 2.52
5671 7096 9.793252 TTGCAAATCTCAGCTTAAGAATATTTC 57.207 29.630 6.67 0.00 0.00 2.17
5673 7098 9.578439 GTTTGCAAATCTCAGCTTAAGAATATT 57.422 29.630 16.21 0.00 0.00 1.28
5674 7099 7.912250 CGTTTGCAAATCTCAGCTTAAGAATAT 59.088 33.333 16.21 0.00 0.00 1.28
5675 7100 7.119116 TCGTTTGCAAATCTCAGCTTAAGAATA 59.881 33.333 16.21 0.00 0.00 1.75
5676 7101 6.072508 TCGTTTGCAAATCTCAGCTTAAGAAT 60.073 34.615 16.21 0.00 0.00 2.40
5677 7102 5.238432 TCGTTTGCAAATCTCAGCTTAAGAA 59.762 36.000 16.21 0.00 0.00 2.52
5678 7103 4.754618 TCGTTTGCAAATCTCAGCTTAAGA 59.245 37.500 16.21 0.00 0.00 2.10
5679 7104 5.034554 TCGTTTGCAAATCTCAGCTTAAG 57.965 39.130 16.21 0.00 0.00 1.85
5684 7109 2.578495 CACTCGTTTGCAAATCTCAGC 58.422 47.619 16.21 0.00 0.00 4.26
5722 7147 5.550232 TCATTGATGATTTTGGTCTGTCG 57.450 39.130 0.00 0.00 0.00 4.35
5752 7177 9.128107 GAACATTGTAAGTGTTTCATTGGTATG 57.872 33.333 0.00 0.00 39.72 2.39
5756 7181 7.652909 ACATGAACATTGTAAGTGTTTCATTGG 59.347 33.333 0.00 0.00 39.72 3.16
5821 7246 9.507280 CATATACATTGCAAGTGTTCTTAAAGG 57.493 33.333 16.19 0.00 32.07 3.11
5939 7398 6.071447 ACAACTGGCTATATCTCTATGCTGAG 60.071 42.308 0.00 0.00 35.52 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.