Multiple sequence alignment - TraesCS5A01G057400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G057400 chr5A 100.000 3510 0 0 1 3510 55017328 55020837 0.000000e+00 6482
1 TraesCS5A01G057400 chr5A 78.427 1284 246 20 1140 2406 575594434 575595703 0.000000e+00 808
2 TraesCS5A01G057400 chr5A 81.490 416 53 16 300 702 548926479 548926075 1.570000e-83 320
3 TraesCS5A01G057400 chr5A 92.188 192 15 0 111 302 473132980 473132789 4.460000e-69 272
4 TraesCS5A01G057400 chr5D 95.976 2659 82 10 856 3501 65753451 65756097 0.000000e+00 4294
5 TraesCS5A01G057400 chr5D 78.741 1303 238 29 1140 2421 457663861 457665145 0.000000e+00 835
6 TraesCS5A01G057400 chr5D 88.050 159 13 4 704 858 65740527 65740683 2.150000e-42 183
7 TraesCS5A01G057400 chr5B 93.265 2628 102 30 914 3501 65279769 65277177 0.000000e+00 3803
8 TraesCS5A01G057400 chr5B 85.564 381 27 3 300 658 590458239 590458613 1.190000e-99 374
9 TraesCS5A01G057400 chr3D 86.199 1681 174 33 925 2574 549704800 549706453 0.000000e+00 1766
10 TraesCS5A01G057400 chr3D 85.714 357 20 8 368 702 569884434 569884087 7.210000e-92 348
11 TraesCS5A01G057400 chr3B 86.226 1619 172 29 970 2565 729414513 729416103 0.000000e+00 1707
12 TraesCS5A01G057400 chr3B 88.060 335 34 2 368 702 210593506 210593178 3.280000e-105 392
13 TraesCS5A01G057400 chr3B 83.099 426 32 13 300 702 776250944 776251352 5.570000e-93 351
14 TraesCS5A01G057400 chr3B 74.879 414 74 18 300 709 743561608 743561995 1.010000e-35 161
15 TraesCS5A01G057400 chr3A 85.655 1680 174 36 925 2574 686863031 686864673 0.000000e+00 1705
16 TraesCS5A01G057400 chr6B 88.861 404 26 8 300 702 209832080 209832465 2.450000e-131 479
17 TraesCS5A01G057400 chr7A 86.842 418 26 9 307 702 17715714 17716124 1.160000e-119 440
18 TraesCS5A01G057400 chr7A 84.793 434 28 7 307 702 175071637 175071204 5.460000e-108 401
19 TraesCS5A01G057400 chr7A 84.793 434 22 10 307 702 107015216 107015643 2.540000e-106 396
20 TraesCS5A01G057400 chr7A 92.708 192 14 0 111 302 20456977 20457168 9.600000e-71 278
21 TraesCS5A01G057400 chr2B 85.647 425 32 5 300 702 594195267 594195684 1.510000e-113 420
22 TraesCS5A01G057400 chr2B 92.188 192 15 0 111 302 751112593 751112402 4.460000e-69 272
23 TraesCS5A01G057400 chr1B 84.000 425 28 12 300 702 543237894 543238300 4.280000e-99 372
24 TraesCS5A01G057400 chr1B 83.535 413 49 12 307 707 598268374 598268779 5.540000e-98 368
25 TraesCS5A01G057400 chr1D 86.842 304 24 9 406 702 237450584 237450290 3.380000e-85 326
26 TraesCS5A01G057400 chr1A 85.893 319 14 7 406 699 14625209 14625521 9.460000e-81 311
27 TraesCS5A01G057400 chr1A 89.388 245 18 3 458 702 24771377 24771141 5.690000e-78 302
28 TraesCS5A01G057400 chr2D 89.388 245 18 3 458 702 147425279 147425043 5.690000e-78 302
29 TraesCS5A01G057400 chr2D 92.188 192 15 0 111 302 524527492 524527301 4.460000e-69 272
30 TraesCS5A01G057400 chr6A 88.710 248 20 4 455 702 2700329 2700568 2.650000e-76 296
31 TraesCS5A01G057400 chr6A 92.188 192 15 0 111 302 31107209 31107018 4.460000e-69 272
32 TraesCS5A01G057400 chr6A 90.909 198 18 0 105 302 2699612 2699809 2.080000e-67 267
33 TraesCS5A01G057400 chrUn 88.095 252 21 4 455 705 19190635 19190878 1.230000e-74 291
34 TraesCS5A01G057400 chrUn 92.188 192 15 0 111 302 19189925 19190116 4.460000e-69 272
35 TraesCS5A01G057400 chr4D 92.708 192 13 1 111 302 447651571 447651761 3.450000e-70 276
36 TraesCS5A01G057400 chr7D 90.955 199 18 0 104 302 51693242 51693440 5.780000e-68 268


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G057400 chr5A 55017328 55020837 3509 False 6482.0 6482 100.0000 1 3510 1 chr5A.!!$F1 3509
1 TraesCS5A01G057400 chr5A 575594434 575595703 1269 False 808.0 808 78.4270 1140 2406 1 chr5A.!!$F2 1266
2 TraesCS5A01G057400 chr5D 65753451 65756097 2646 False 4294.0 4294 95.9760 856 3501 1 chr5D.!!$F2 2645
3 TraesCS5A01G057400 chr5D 457663861 457665145 1284 False 835.0 835 78.7410 1140 2421 1 chr5D.!!$F3 1281
4 TraesCS5A01G057400 chr5B 65277177 65279769 2592 True 3803.0 3803 93.2650 914 3501 1 chr5B.!!$R1 2587
5 TraesCS5A01G057400 chr3D 549704800 549706453 1653 False 1766.0 1766 86.1990 925 2574 1 chr3D.!!$F1 1649
6 TraesCS5A01G057400 chr3B 729414513 729416103 1590 False 1707.0 1707 86.2260 970 2565 1 chr3B.!!$F1 1595
7 TraesCS5A01G057400 chr3A 686863031 686864673 1642 False 1705.0 1705 85.6550 925 2574 1 chr3A.!!$F1 1649
8 TraesCS5A01G057400 chr6A 2699612 2700568 956 False 281.5 296 89.8095 105 702 2 chr6A.!!$F1 597
9 TraesCS5A01G057400 chrUn 19189925 19190878 953 False 281.5 291 90.1415 111 705 2 chrUn.!!$F1 594

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
824 1281 0.033796 ATGGGACCATTGCCTCACAG 60.034 55.0 0.0 0.0 33.27 3.66 F
826 1283 0.618458 GGGACCATTGCCTCACAGTA 59.382 55.0 0.0 0.0 0.00 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1811 2303 0.758734 CCTTCCGGCACATATCAGGA 59.241 55.000 0.0 0.0 0.0 3.86 R
2740 3269 1.662122 CGTCGGTTATTGTGGGCTAAC 59.338 52.381 0.0 0.0 0.0 2.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.134127 GGAGTGCCCGGTCATTGC 61.134 66.667 0.00 0.00 0.00 3.56
18 19 3.134127 GAGTGCCCGGTCATTGCC 61.134 66.667 0.00 0.00 0.00 4.52
19 20 3.628646 GAGTGCCCGGTCATTGCCT 62.629 63.158 0.00 0.00 0.00 4.75
20 21 3.443045 GTGCCCGGTCATTGCCTG 61.443 66.667 0.00 0.00 0.00 4.85
24 25 4.776322 CCGGTCATTGCCTGCGGA 62.776 66.667 0.00 0.00 33.71 5.54
25 26 3.499737 CGGTCATTGCCTGCGGAC 61.500 66.667 0.00 0.00 0.00 4.79
26 27 3.499737 GGTCATTGCCTGCGGACG 61.500 66.667 0.00 0.00 0.00 4.79
27 28 2.434185 GTCATTGCCTGCGGACGA 60.434 61.111 0.00 0.00 0.00 4.20
28 29 2.125552 TCATTGCCTGCGGACGAG 60.126 61.111 0.00 0.00 0.00 4.18
29 30 3.869272 CATTGCCTGCGGACGAGC 61.869 66.667 0.00 0.00 37.71 5.03
30 31 4.393155 ATTGCCTGCGGACGAGCA 62.393 61.111 0.00 0.00 45.96 4.26
51 52 3.506108 CCGCAGGCATTTGAGGAG 58.494 61.111 0.00 0.00 46.14 3.69
52 53 2.768492 CCGCAGGCATTTGAGGAGC 61.768 63.158 0.00 0.00 46.14 4.70
57 58 3.509517 GGCATTTGAGGAGCCTGAT 57.490 52.632 0.00 0.00 44.92 2.90
58 59 1.772836 GGCATTTGAGGAGCCTGATT 58.227 50.000 0.00 0.00 44.92 2.57
59 60 2.105766 GGCATTTGAGGAGCCTGATTT 58.894 47.619 0.00 0.00 44.92 2.17
60 61 2.159142 GGCATTTGAGGAGCCTGATTTG 60.159 50.000 0.00 0.00 44.92 2.32
61 62 2.737679 GCATTTGAGGAGCCTGATTTGC 60.738 50.000 0.00 0.00 0.00 3.68
62 63 2.592102 TTTGAGGAGCCTGATTTGCT 57.408 45.000 0.00 0.00 43.03 3.91
63 64 1.830279 TTGAGGAGCCTGATTTGCTG 58.170 50.000 0.00 0.00 39.69 4.41
64 65 0.986527 TGAGGAGCCTGATTTGCTGA 59.013 50.000 0.00 0.00 39.69 4.26
65 66 1.065636 TGAGGAGCCTGATTTGCTGAG 60.066 52.381 0.00 0.00 39.69 3.35
66 67 0.990374 AGGAGCCTGATTTGCTGAGT 59.010 50.000 0.00 0.00 39.69 3.41
67 68 1.065564 AGGAGCCTGATTTGCTGAGTC 60.066 52.381 0.00 0.00 39.69 3.36
68 69 1.065564 GGAGCCTGATTTGCTGAGTCT 60.066 52.381 0.00 0.00 39.69 3.24
69 70 2.008329 GAGCCTGATTTGCTGAGTCTG 58.992 52.381 0.00 0.00 39.69 3.51
70 71 1.093159 GCCTGATTTGCTGAGTCTGG 58.907 55.000 0.00 5.30 35.00 3.86
71 72 1.093159 CCTGATTTGCTGAGTCTGGC 58.907 55.000 0.00 0.81 0.00 4.85
72 73 1.339824 CCTGATTTGCTGAGTCTGGCT 60.340 52.381 9.36 0.00 0.00 4.75
73 74 1.738350 CTGATTTGCTGAGTCTGGCTG 59.262 52.381 9.36 0.00 0.00 4.85
74 75 1.072806 TGATTTGCTGAGTCTGGCTGT 59.927 47.619 9.36 0.00 0.00 4.40
75 76 2.302733 TGATTTGCTGAGTCTGGCTGTA 59.697 45.455 9.36 0.00 0.00 2.74
76 77 2.462456 TTTGCTGAGTCTGGCTGTAG 57.538 50.000 9.36 0.00 0.00 2.74
77 78 1.632589 TTGCTGAGTCTGGCTGTAGA 58.367 50.000 9.36 0.00 0.00 2.59
78 79 1.857965 TGCTGAGTCTGGCTGTAGAT 58.142 50.000 9.36 0.00 0.00 1.98
79 80 1.479730 TGCTGAGTCTGGCTGTAGATG 59.520 52.381 9.36 0.00 0.00 2.90
80 81 1.805871 GCTGAGTCTGGCTGTAGATGC 60.806 57.143 0.00 0.00 0.00 3.91
81 82 1.755959 CTGAGTCTGGCTGTAGATGCT 59.244 52.381 0.00 0.00 0.00 3.79
82 83 1.753649 TGAGTCTGGCTGTAGATGCTC 59.246 52.381 0.00 0.00 0.00 4.26
83 84 2.031120 GAGTCTGGCTGTAGATGCTCT 58.969 52.381 0.00 0.00 0.00 4.09
84 85 3.218453 GAGTCTGGCTGTAGATGCTCTA 58.782 50.000 0.00 0.00 0.00 2.43
85 86 3.634448 GAGTCTGGCTGTAGATGCTCTAA 59.366 47.826 0.00 0.00 29.58 2.10
86 87 4.222336 AGTCTGGCTGTAGATGCTCTAAT 58.778 43.478 0.00 0.00 29.58 1.73
87 88 4.039004 AGTCTGGCTGTAGATGCTCTAATG 59.961 45.833 0.00 0.00 29.58 1.90
88 89 3.963374 TCTGGCTGTAGATGCTCTAATGT 59.037 43.478 0.00 0.00 29.58 2.71
89 90 4.056740 CTGGCTGTAGATGCTCTAATGTG 58.943 47.826 0.00 0.00 29.58 3.21
90 91 3.181462 TGGCTGTAGATGCTCTAATGTGG 60.181 47.826 0.00 0.00 29.58 4.17
91 92 3.070159 GGCTGTAGATGCTCTAATGTGGA 59.930 47.826 0.00 0.00 29.58 4.02
92 93 4.262808 GGCTGTAGATGCTCTAATGTGGAT 60.263 45.833 0.00 0.00 29.58 3.41
93 94 5.047021 GGCTGTAGATGCTCTAATGTGGATA 60.047 44.000 0.00 0.00 29.58 2.59
94 95 6.098679 GCTGTAGATGCTCTAATGTGGATAG 58.901 44.000 0.00 0.00 29.58 2.08
95 96 6.030548 TGTAGATGCTCTAATGTGGATAGC 57.969 41.667 0.00 0.00 29.58 2.97
96 97 4.550076 AGATGCTCTAATGTGGATAGCC 57.450 45.455 0.00 0.00 32.14 3.93
97 98 3.906218 AGATGCTCTAATGTGGATAGCCA 59.094 43.478 0.00 0.00 43.47 4.75
98 99 6.519043 GTAGATGCTCTAATGTGGATAGCCAA 60.519 42.308 0.00 0.00 36.96 4.52
99 100 8.480086 GTAGATGCTCTAATGTGGATAGCCAAC 61.480 44.444 0.00 0.00 36.96 3.77
109 110 4.974645 TGGATAGCCAACTTACCATAGG 57.025 45.455 0.00 0.00 42.49 2.57
180 181 2.918452 ATTGGGGGATGGGGATGGGT 62.918 60.000 0.00 0.00 0.00 4.51
194 195 4.731313 GGATGGGTATCTTTTCATCCCT 57.269 45.455 9.37 0.00 45.92 4.20
295 296 3.569690 CGGCAATACCCGCGGAAC 61.570 66.667 30.73 8.63 42.03 3.62
309 744 2.412325 CGCGGAACTACATTTGTGAACC 60.412 50.000 0.00 0.00 0.00 3.62
311 746 3.003897 GCGGAACTACATTTGTGAACCAA 59.996 43.478 0.00 0.00 0.00 3.67
312 747 4.783242 CGGAACTACATTTGTGAACCAAG 58.217 43.478 0.00 0.00 33.75 3.61
314 749 5.008217 CGGAACTACATTTGTGAACCAAGAA 59.992 40.000 0.00 0.00 33.75 2.52
346 781 8.918202 TTTAGAACTTGTGTAATTGGACATCT 57.082 30.769 0.00 0.00 0.00 2.90
347 782 8.918202 TTAGAACTTGTGTAATTGGACATCTT 57.082 30.769 0.00 0.00 0.00 2.40
348 783 7.206981 AGAACTTGTGTAATTGGACATCTTG 57.793 36.000 0.00 0.00 0.00 3.02
349 784 6.772716 AGAACTTGTGTAATTGGACATCTTGT 59.227 34.615 0.00 0.00 0.00 3.16
350 785 6.959639 ACTTGTGTAATTGGACATCTTGTT 57.040 33.333 0.00 0.00 0.00 2.83
351 786 6.738114 ACTTGTGTAATTGGACATCTTGTTG 58.262 36.000 0.00 0.00 0.00 3.33
352 787 6.545666 ACTTGTGTAATTGGACATCTTGTTGA 59.454 34.615 0.00 0.00 0.00 3.18
353 788 6.951062 TGTGTAATTGGACATCTTGTTGAA 57.049 33.333 0.00 0.00 0.00 2.69
354 789 6.734137 TGTGTAATTGGACATCTTGTTGAAC 58.266 36.000 0.00 0.00 0.00 3.18
355 790 6.149633 GTGTAATTGGACATCTTGTTGAACC 58.850 40.000 0.00 0.00 0.00 3.62
356 791 5.830457 TGTAATTGGACATCTTGTTGAACCA 59.170 36.000 0.00 0.00 0.00 3.67
357 792 6.493115 TGTAATTGGACATCTTGTTGAACCAT 59.507 34.615 0.00 0.00 31.26 3.55
358 793 4.852134 TTGGACATCTTGTTGAACCATG 57.148 40.909 0.00 0.00 31.26 3.66
359 794 3.831323 TGGACATCTTGTTGAACCATGT 58.169 40.909 4.83 4.83 0.00 3.21
360 795 4.979335 TGGACATCTTGTTGAACCATGTA 58.021 39.130 5.08 0.00 0.00 2.29
361 796 5.569355 TGGACATCTTGTTGAACCATGTAT 58.431 37.500 5.08 0.00 0.00 2.29
362 797 5.415389 TGGACATCTTGTTGAACCATGTATG 59.585 40.000 5.08 0.17 0.00 2.39
363 798 5.647658 GGACATCTTGTTGAACCATGTATGA 59.352 40.000 5.08 0.00 0.00 2.15
364 799 6.403636 GGACATCTTGTTGAACCATGTATGAC 60.404 42.308 5.08 0.00 0.00 3.06
365 800 6.240894 ACATCTTGTTGAACCATGTATGACT 58.759 36.000 3.63 0.00 0.00 3.41
366 801 6.372659 ACATCTTGTTGAACCATGTATGACTC 59.627 38.462 3.63 0.00 0.00 3.36
367 802 5.863965 TCTTGTTGAACCATGTATGACTCA 58.136 37.500 0.00 0.00 0.00 3.41
368 803 6.295249 TCTTGTTGAACCATGTATGACTCAA 58.705 36.000 0.00 0.00 0.00 3.02
369 804 6.770303 TCTTGTTGAACCATGTATGACTCAAA 59.230 34.615 8.95 0.00 33.25 2.69
370 805 7.448161 TCTTGTTGAACCATGTATGACTCAAAT 59.552 33.333 8.95 0.00 33.25 2.32
371 806 7.144722 TGTTGAACCATGTATGACTCAAATC 57.855 36.000 8.95 2.38 33.25 2.17
372 807 6.942005 TGTTGAACCATGTATGACTCAAATCT 59.058 34.615 8.95 0.00 33.25 2.40
373 808 6.990341 TGAACCATGTATGACTCAAATCTG 57.010 37.500 0.00 0.00 0.00 2.90
374 809 6.710278 TGAACCATGTATGACTCAAATCTGA 58.290 36.000 0.00 0.00 0.00 3.27
375 810 7.341030 TGAACCATGTATGACTCAAATCTGAT 58.659 34.615 0.00 0.00 0.00 2.90
376 811 7.496920 TGAACCATGTATGACTCAAATCTGATC 59.503 37.037 0.00 0.00 0.00 2.92
377 812 6.892485 ACCATGTATGACTCAAATCTGATCA 58.108 36.000 0.00 0.00 0.00 2.92
378 813 7.515586 ACCATGTATGACTCAAATCTGATCAT 58.484 34.615 0.00 0.00 35.64 2.45
379 814 7.660617 ACCATGTATGACTCAAATCTGATCATC 59.339 37.037 0.00 0.00 34.47 2.92
380 815 7.878644 CCATGTATGACTCAAATCTGATCATCT 59.121 37.037 0.00 0.00 34.47 2.90
381 816 9.274206 CATGTATGACTCAAATCTGATCATCTT 57.726 33.333 0.00 0.00 34.47 2.40
382 817 9.848710 ATGTATGACTCAAATCTGATCATCTTT 57.151 29.630 0.00 0.00 34.47 2.52
383 818 9.106070 TGTATGACTCAAATCTGATCATCTTTG 57.894 33.333 17.72 17.72 34.47 2.77
384 819 9.107177 GTATGACTCAAATCTGATCATCTTTGT 57.893 33.333 20.73 9.76 34.47 2.83
385 820 7.991084 TGACTCAAATCTGATCATCTTTGTT 57.009 32.000 20.73 13.60 31.98 2.83
386 821 7.813645 TGACTCAAATCTGATCATCTTTGTTG 58.186 34.615 20.73 17.79 31.98 3.33
387 822 6.618811 ACTCAAATCTGATCATCTTTGTTGC 58.381 36.000 20.73 0.00 31.98 4.17
388 823 6.433404 ACTCAAATCTGATCATCTTTGTTGCT 59.567 34.615 20.73 7.37 31.98 3.91
389 824 6.617879 TCAAATCTGATCATCTTTGTTGCTG 58.382 36.000 20.73 4.93 31.98 4.41
390 825 6.431852 TCAAATCTGATCATCTTTGTTGCTGA 59.568 34.615 20.73 3.57 31.98 4.26
391 826 6.829229 AATCTGATCATCTTTGTTGCTGAA 57.171 33.333 0.00 0.00 0.00 3.02
392 827 6.829229 ATCTGATCATCTTTGTTGCTGAAA 57.171 33.333 0.00 0.00 0.00 2.69
393 828 6.829229 TCTGATCATCTTTGTTGCTGAAAT 57.171 33.333 0.00 0.00 0.00 2.17
394 829 6.617879 TCTGATCATCTTTGTTGCTGAAATG 58.382 36.000 0.00 0.00 0.00 2.32
395 830 6.208007 TCTGATCATCTTTGTTGCTGAAATGT 59.792 34.615 0.00 0.00 0.00 2.71
396 831 6.153756 TGATCATCTTTGTTGCTGAAATGTG 58.846 36.000 0.00 0.00 0.00 3.21
397 832 4.873817 TCATCTTTGTTGCTGAAATGTGG 58.126 39.130 0.00 0.00 0.00 4.17
398 833 4.341806 TCATCTTTGTTGCTGAAATGTGGT 59.658 37.500 0.00 0.00 0.00 4.16
399 834 5.534278 TCATCTTTGTTGCTGAAATGTGGTA 59.466 36.000 0.00 0.00 0.00 3.25
400 835 6.209192 TCATCTTTGTTGCTGAAATGTGGTAT 59.791 34.615 0.00 0.00 0.00 2.73
401 836 6.012658 TCTTTGTTGCTGAAATGTGGTATC 57.987 37.500 0.00 0.00 0.00 2.24
402 837 4.418013 TTGTTGCTGAAATGTGGTATCG 57.582 40.909 0.00 0.00 0.00 2.92
403 838 3.407698 TGTTGCTGAAATGTGGTATCGT 58.592 40.909 0.00 0.00 0.00 3.73
404 839 3.188254 TGTTGCTGAAATGTGGTATCGTG 59.812 43.478 0.00 0.00 0.00 4.35
405 840 1.737236 TGCTGAAATGTGGTATCGTGC 59.263 47.619 0.00 0.00 0.00 5.34
406 841 2.009774 GCTGAAATGTGGTATCGTGCT 58.990 47.619 0.00 0.00 0.00 4.40
407 842 2.223112 GCTGAAATGTGGTATCGTGCTG 60.223 50.000 0.00 0.00 0.00 4.41
408 843 1.737236 TGAAATGTGGTATCGTGCTGC 59.263 47.619 0.00 0.00 0.00 5.25
409 844 2.009774 GAAATGTGGTATCGTGCTGCT 58.990 47.619 0.00 0.00 0.00 4.24
410 845 1.372582 AATGTGGTATCGTGCTGCTG 58.627 50.000 0.00 0.00 0.00 4.41
411 846 0.536724 ATGTGGTATCGTGCTGCTGA 59.463 50.000 0.00 0.00 0.00 4.26
412 847 0.320050 TGTGGTATCGTGCTGCTGAA 59.680 50.000 0.00 0.00 0.00 3.02
413 848 1.270571 TGTGGTATCGTGCTGCTGAAA 60.271 47.619 0.00 0.00 0.00 2.69
414 849 2.009774 GTGGTATCGTGCTGCTGAAAT 58.990 47.619 0.00 0.00 0.00 2.17
415 850 3.194861 GTGGTATCGTGCTGCTGAAATA 58.805 45.455 0.00 0.00 0.00 1.40
416 851 3.001330 GTGGTATCGTGCTGCTGAAATAC 59.999 47.826 0.00 4.20 0.00 1.89
417 852 3.194861 GGTATCGTGCTGCTGAAATACA 58.805 45.455 0.00 0.00 0.00 2.29
418 853 3.001330 GGTATCGTGCTGCTGAAATACAC 59.999 47.826 0.00 0.00 0.00 2.90
419 854 2.455674 TCGTGCTGCTGAAATACACT 57.544 45.000 0.00 0.00 0.00 3.55
420 855 2.337583 TCGTGCTGCTGAAATACACTC 58.662 47.619 0.00 0.00 0.00 3.51
441 876 6.870965 CACTCTATATAGCTGTTGAACCATCC 59.129 42.308 4.75 0.00 0.00 3.51
478 913 5.695816 TGTTGAAATTTGCTCAAGTTATGCC 59.304 36.000 0.00 0.00 33.56 4.40
544 1001 1.084289 GATTTTCTCGTGGGTTCCCG 58.916 55.000 3.27 0.00 0.00 5.14
583 1040 1.968050 ATGGGTTTAGAGGACGGGCG 61.968 60.000 0.00 0.00 0.00 6.13
599 1056 3.192922 CGGAAAACTAGCCCCGCG 61.193 66.667 0.00 0.00 35.29 6.46
600 1057 2.046604 GGAAAACTAGCCCCGCGT 60.047 61.111 4.92 0.00 0.00 6.01
613 1070 2.182284 CGCGTACGGTGATGGGAA 59.818 61.111 18.39 0.00 34.97 3.97
614 1071 2.162754 CGCGTACGGTGATGGGAAC 61.163 63.158 18.39 0.00 34.97 3.62
615 1072 2.162754 GCGTACGGTGATGGGAACG 61.163 63.158 18.39 0.00 0.00 3.95
616 1073 1.517694 CGTACGGTGATGGGAACGG 60.518 63.158 7.57 0.00 0.00 4.44
617 1074 1.153509 GTACGGTGATGGGAACGGG 60.154 63.158 0.00 0.00 0.00 5.28
618 1075 1.305129 TACGGTGATGGGAACGGGA 60.305 57.895 0.00 0.00 0.00 5.14
645 1102 4.862574 GGGACGGTTTTATGATTTTCTTGC 59.137 41.667 0.00 0.00 0.00 4.01
689 1146 0.037590 CCTGATGGTTTTCGTCCCCA 59.962 55.000 0.00 0.00 0.00 4.96
702 1159 1.851304 GTCCCCATTGCCATCTTGAA 58.149 50.000 0.00 0.00 0.00 2.69
703 1160 1.478105 GTCCCCATTGCCATCTTGAAC 59.522 52.381 0.00 0.00 0.00 3.18
705 1162 1.559368 CCCATTGCCATCTTGAACCA 58.441 50.000 0.00 0.00 0.00 3.67
706 1163 2.112998 CCCATTGCCATCTTGAACCAT 58.887 47.619 0.00 0.00 0.00 3.55
707 1164 3.298619 CCCATTGCCATCTTGAACCATA 58.701 45.455 0.00 0.00 0.00 2.74
708 1165 3.319972 CCCATTGCCATCTTGAACCATAG 59.680 47.826 0.00 0.00 0.00 2.23
709 1166 3.319972 CCATTGCCATCTTGAACCATAGG 59.680 47.826 0.00 0.00 0.00 2.57
710 1167 3.737559 TTGCCATCTTGAACCATAGGT 57.262 42.857 0.00 0.00 37.65 3.08
711 1168 4.853468 TTGCCATCTTGAACCATAGGTA 57.147 40.909 0.00 0.00 33.12 3.08
712 1169 4.422073 TGCCATCTTGAACCATAGGTAG 57.578 45.455 0.00 0.00 33.12 3.18
713 1170 3.136443 TGCCATCTTGAACCATAGGTAGG 59.864 47.826 0.00 0.00 33.12 3.18
714 1171 3.136626 GCCATCTTGAACCATAGGTAGGT 59.863 47.826 0.00 0.00 42.34 3.08
715 1172 4.708177 CCATCTTGAACCATAGGTAGGTG 58.292 47.826 0.00 0.00 39.86 4.00
716 1173 4.164221 CCATCTTGAACCATAGGTAGGTGT 59.836 45.833 0.00 0.00 39.86 4.16
717 1174 5.365605 CCATCTTGAACCATAGGTAGGTGTA 59.634 44.000 0.00 0.00 39.86 2.90
718 1175 5.927281 TCTTGAACCATAGGTAGGTGTAC 57.073 43.478 0.00 0.00 39.86 2.90
719 1176 5.335261 TCTTGAACCATAGGTAGGTGTACA 58.665 41.667 0.00 0.00 39.86 2.90
720 1177 5.186409 TCTTGAACCATAGGTAGGTGTACAC 59.814 44.000 18.01 18.01 39.86 2.90
721 1178 4.680407 TGAACCATAGGTAGGTGTACACT 58.320 43.478 24.55 13.41 39.86 3.55
722 1179 5.088730 TGAACCATAGGTAGGTGTACACTT 58.911 41.667 24.55 20.13 39.86 3.16
723 1180 5.544948 TGAACCATAGGTAGGTGTACACTTT 59.455 40.000 24.55 15.65 39.86 2.66
724 1181 5.672421 ACCATAGGTAGGTGTACACTTTC 57.328 43.478 24.55 15.27 38.13 2.62
725 1182 5.339477 ACCATAGGTAGGTGTACACTTTCT 58.661 41.667 24.55 18.74 38.13 2.52
726 1183 5.783875 ACCATAGGTAGGTGTACACTTTCTT 59.216 40.000 24.55 14.25 38.13 2.52
727 1184 6.271624 ACCATAGGTAGGTGTACACTTTCTTT 59.728 38.462 24.55 10.94 38.13 2.52
728 1185 7.166167 CCATAGGTAGGTGTACACTTTCTTTT 58.834 38.462 24.55 5.13 0.00 2.27
729 1186 7.333672 CCATAGGTAGGTGTACACTTTCTTTTC 59.666 40.741 24.55 6.26 0.00 2.29
730 1187 5.618236 AGGTAGGTGTACACTTTCTTTTCC 58.382 41.667 24.55 15.02 0.00 3.13
731 1188 5.368816 AGGTAGGTGTACACTTTCTTTTCCT 59.631 40.000 24.55 16.57 0.00 3.36
732 1189 6.060136 GGTAGGTGTACACTTTCTTTTCCTT 58.940 40.000 24.55 0.00 0.00 3.36
733 1190 6.544931 GGTAGGTGTACACTTTCTTTTCCTTT 59.455 38.462 24.55 0.00 0.00 3.11
734 1191 6.451064 AGGTGTACACTTTCTTTTCCTTTG 57.549 37.500 24.55 0.00 0.00 2.77
735 1192 5.041287 GGTGTACACTTTCTTTTCCTTTGC 58.959 41.667 24.55 0.00 0.00 3.68
736 1193 5.163550 GGTGTACACTTTCTTTTCCTTTGCT 60.164 40.000 24.55 0.00 0.00 3.91
737 1194 5.971792 GTGTACACTTTCTTTTCCTTTGCTC 59.028 40.000 18.92 0.00 0.00 4.26
738 1195 5.885912 TGTACACTTTCTTTTCCTTTGCTCT 59.114 36.000 0.00 0.00 0.00 4.09
739 1196 5.921962 ACACTTTCTTTTCCTTTGCTCTT 57.078 34.783 0.00 0.00 0.00 2.85
740 1197 6.286240 ACACTTTCTTTTCCTTTGCTCTTT 57.714 33.333 0.00 0.00 0.00 2.52
741 1198 6.333416 ACACTTTCTTTTCCTTTGCTCTTTC 58.667 36.000 0.00 0.00 0.00 2.62
742 1199 6.153510 ACACTTTCTTTTCCTTTGCTCTTTCT 59.846 34.615 0.00 0.00 0.00 2.52
743 1200 6.474751 CACTTTCTTTTCCTTTGCTCTTTCTG 59.525 38.462 0.00 0.00 0.00 3.02
744 1201 6.153510 ACTTTCTTTTCCTTTGCTCTTTCTGT 59.846 34.615 0.00 0.00 0.00 3.41
745 1202 6.530019 TTCTTTTCCTTTGCTCTTTCTGTT 57.470 33.333 0.00 0.00 0.00 3.16
746 1203 6.530019 TCTTTTCCTTTGCTCTTTCTGTTT 57.470 33.333 0.00 0.00 0.00 2.83
747 1204 6.332630 TCTTTTCCTTTGCTCTTTCTGTTTG 58.667 36.000 0.00 0.00 0.00 2.93
748 1205 5.659440 TTTCCTTTGCTCTTTCTGTTTGT 57.341 34.783 0.00 0.00 0.00 2.83
749 1206 6.767524 TTTCCTTTGCTCTTTCTGTTTGTA 57.232 33.333 0.00 0.00 0.00 2.41
750 1207 6.767524 TTCCTTTGCTCTTTCTGTTTGTAA 57.232 33.333 0.00 0.00 0.00 2.41
751 1208 6.131544 TCCTTTGCTCTTTCTGTTTGTAAC 57.868 37.500 0.00 0.00 0.00 2.50
752 1209 5.650266 TCCTTTGCTCTTTCTGTTTGTAACA 59.350 36.000 0.00 0.00 39.52 2.41
783 1240 6.800072 TTTTTAACCTCATGTTCCCTGTTT 57.200 33.333 0.00 0.00 38.42 2.83
784 1241 5.782893 TTTAACCTCATGTTCCCTGTTTG 57.217 39.130 0.00 0.00 38.42 2.93
785 1242 3.312736 AACCTCATGTTCCCTGTTTGT 57.687 42.857 0.00 0.00 28.45 2.83
786 1243 3.312736 ACCTCATGTTCCCTGTTTGTT 57.687 42.857 0.00 0.00 0.00 2.83
787 1244 4.447138 ACCTCATGTTCCCTGTTTGTTA 57.553 40.909 0.00 0.00 0.00 2.41
788 1245 4.798882 ACCTCATGTTCCCTGTTTGTTAA 58.201 39.130 0.00 0.00 0.00 2.01
789 1246 5.393866 ACCTCATGTTCCCTGTTTGTTAAT 58.606 37.500 0.00 0.00 0.00 1.40
790 1247 5.838521 ACCTCATGTTCCCTGTTTGTTAATT 59.161 36.000 0.00 0.00 0.00 1.40
791 1248 7.007723 ACCTCATGTTCCCTGTTTGTTAATTA 58.992 34.615 0.00 0.00 0.00 1.40
792 1249 7.673926 ACCTCATGTTCCCTGTTTGTTAATTAT 59.326 33.333 0.00 0.00 0.00 1.28
793 1250 8.531146 CCTCATGTTCCCTGTTTGTTAATTATT 58.469 33.333 0.00 0.00 0.00 1.40
818 1275 6.670695 ATAAAAGATTATGGGACCATTGCC 57.329 37.500 9.44 0.00 37.82 4.52
819 1276 3.979501 AAGATTATGGGACCATTGCCT 57.020 42.857 9.44 1.73 37.82 4.75
820 1277 3.515602 AGATTATGGGACCATTGCCTC 57.484 47.619 9.44 2.29 37.82 4.70
821 1278 2.785269 AGATTATGGGACCATTGCCTCA 59.215 45.455 9.44 0.00 37.82 3.86
822 1279 2.435372 TTATGGGACCATTGCCTCAC 57.565 50.000 9.44 0.00 37.82 3.51
823 1280 1.294041 TATGGGACCATTGCCTCACA 58.706 50.000 9.44 0.00 37.82 3.58
824 1281 0.033796 ATGGGACCATTGCCTCACAG 60.034 55.000 0.00 0.00 33.27 3.66
825 1282 1.380302 GGGACCATTGCCTCACAGT 59.620 57.895 0.00 0.00 0.00 3.55
826 1283 0.618458 GGGACCATTGCCTCACAGTA 59.382 55.000 0.00 0.00 0.00 2.74
827 1284 1.679032 GGGACCATTGCCTCACAGTAC 60.679 57.143 0.00 0.00 0.00 2.73
828 1285 1.003118 GGACCATTGCCTCACAGTACA 59.997 52.381 0.00 0.00 0.00 2.90
829 1286 2.356125 GGACCATTGCCTCACAGTACAT 60.356 50.000 0.00 0.00 0.00 2.29
830 1287 3.118408 GGACCATTGCCTCACAGTACATA 60.118 47.826 0.00 0.00 0.00 2.29
831 1288 4.444876 GGACCATTGCCTCACAGTACATAT 60.445 45.833 0.00 0.00 0.00 1.78
832 1289 5.221641 GGACCATTGCCTCACAGTACATATA 60.222 44.000 0.00 0.00 0.00 0.86
833 1290 6.439636 ACCATTGCCTCACAGTACATATAT 57.560 37.500 0.00 0.00 0.00 0.86
834 1291 6.841601 ACCATTGCCTCACAGTACATATATT 58.158 36.000 0.00 0.00 0.00 1.28
835 1292 6.936900 ACCATTGCCTCACAGTACATATATTC 59.063 38.462 0.00 0.00 0.00 1.75
836 1293 6.936335 CCATTGCCTCACAGTACATATATTCA 59.064 38.462 0.00 0.00 0.00 2.57
837 1294 7.445096 CCATTGCCTCACAGTACATATATTCAA 59.555 37.037 0.00 0.00 0.00 2.69
838 1295 8.839343 CATTGCCTCACAGTACATATATTCAAA 58.161 33.333 0.00 0.00 0.00 2.69
839 1296 8.437360 TTGCCTCACAGTACATATATTCAAAG 57.563 34.615 0.00 0.00 0.00 2.77
840 1297 7.791029 TGCCTCACAGTACATATATTCAAAGA 58.209 34.615 0.00 0.00 0.00 2.52
841 1298 8.264347 TGCCTCACAGTACATATATTCAAAGAA 58.736 33.333 0.00 0.00 0.00 2.52
842 1299 9.109393 GCCTCACAGTACATATATTCAAAGAAA 57.891 33.333 0.00 0.00 0.00 2.52
852 1309 9.162764 ACATATATTCAAAGAAAACTACTGCGT 57.837 29.630 0.00 0.00 0.00 5.24
868 1325 9.820725 AACTACTGCGTATTAATAATGGTGTAA 57.179 29.630 0.00 0.00 0.00 2.41
872 1329 8.617809 ACTGCGTATTAATAATGGTGTAAAAGG 58.382 33.333 0.00 0.00 0.00 3.11
873 1330 8.734218 TGCGTATTAATAATGGTGTAAAAGGA 57.266 30.769 0.00 0.00 0.00 3.36
875 1332 8.071967 GCGTATTAATAATGGTGTAAAAGGACC 58.928 37.037 0.00 0.00 0.00 4.46
876 1333 9.333724 CGTATTAATAATGGTGTAAAAGGACCT 57.666 33.333 0.00 0.00 32.98 3.85
939 1396 3.950397 TGAAGTTAGCACTAACCATGGG 58.050 45.455 18.09 0.00 44.79 4.00
1071 1559 1.078567 CCTTGAGGAGCTGAGGTGC 60.079 63.158 0.00 0.00 37.39 5.01
1161 1650 1.788258 CAAGAGCAAGACGAGCAAGA 58.212 50.000 0.00 0.00 0.00 3.02
1297 1789 1.899437 GACAAGGCGGAGGTGATGGA 61.899 60.000 0.00 0.00 0.00 3.41
1298 1790 1.274703 ACAAGGCGGAGGTGATGGAT 61.275 55.000 0.00 0.00 0.00 3.41
1811 2303 1.342082 CCTTCGACGACGCGAACATT 61.342 55.000 15.93 0.00 44.43 2.71
1814 2306 1.800315 CGACGACGCGAACATTCCT 60.800 57.895 15.93 0.00 0.00 3.36
2006 2498 3.764466 CAGCTCGACGGCCTCCTT 61.764 66.667 0.00 0.00 0.00 3.36
2396 2909 3.465966 TGGAGCTAGGGGATGTAGTAAGA 59.534 47.826 0.00 0.00 0.00 2.10
2663 3192 2.869801 TGTTGAGCAAGTAAAGACGGTG 59.130 45.455 0.00 0.00 0.00 4.94
2740 3269 5.291371 CAGCACACTGTAGATCAATGAGAAG 59.709 44.000 0.00 0.00 39.22 2.85
2749 3278 4.775236 AGATCAATGAGAAGTTAGCCCAC 58.225 43.478 0.00 0.00 0.00 4.61
2762 3291 0.322322 AGCCCACAATAACCGACGAA 59.678 50.000 0.00 0.00 0.00 3.85
2784 3313 9.003658 ACGAATAATCAGAATTTAGCCCATAAG 57.996 33.333 0.00 0.00 0.00 1.73
2951 3494 5.724328 ACTTCATGTATATGCCATACCTCG 58.276 41.667 0.00 0.00 34.21 4.63
3034 3577 5.575957 TCTACTCTAATTAACAAGACCGCG 58.424 41.667 0.00 0.00 0.00 6.46
3087 3630 8.668510 TGATTAGACAGCCTCTTAATCATTTC 57.331 34.615 7.04 0.00 31.24 2.17
3126 3669 1.074319 CGCGACAGTTTTAGCCGCTA 61.074 55.000 0.00 0.00 43.19 4.26
3378 3923 4.331168 AGAAATGATAGCTCGTGTTTCAGC 59.669 41.667 13.57 0.00 35.73 4.26
3413 3958 1.988956 CAGGGCTCCTGTCTGCTCT 60.989 63.158 11.85 0.00 45.82 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.134127 GCAATGACCGGGCACTCC 61.134 66.667 15.41 0.00 0.00 3.85
1 2 3.134127 GGCAATGACCGGGCACTC 61.134 66.667 15.41 3.96 0.00 3.51
2 3 3.650950 AGGCAATGACCGGGCACT 61.651 61.111 15.41 0.00 33.69 4.40
3 4 3.443045 CAGGCAATGACCGGGCAC 61.443 66.667 15.41 0.00 33.69 5.01
27 28 4.704833 AATGCCTGCGGACGTGCT 62.705 61.111 5.27 0.00 35.36 4.40
28 29 3.737172 AAATGCCTGCGGACGTGC 61.737 61.111 0.00 0.00 0.00 5.34
29 30 2.176546 CAAATGCCTGCGGACGTG 59.823 61.111 0.00 0.00 0.00 4.49
30 31 2.031919 TCAAATGCCTGCGGACGT 59.968 55.556 0.00 0.00 0.00 4.34
31 32 2.753966 CCTCAAATGCCTGCGGACG 61.754 63.158 0.00 0.00 0.00 4.79
32 33 1.372087 CTCCTCAAATGCCTGCGGAC 61.372 60.000 0.00 0.00 0.00 4.79
33 34 1.078214 CTCCTCAAATGCCTGCGGA 60.078 57.895 0.00 0.00 0.00 5.54
34 35 2.768492 GCTCCTCAAATGCCTGCGG 61.768 63.158 0.00 0.00 0.00 5.69
35 36 2.768492 GGCTCCTCAAATGCCTGCG 61.768 63.158 0.00 0.00 43.05 5.18
36 37 3.204418 GGCTCCTCAAATGCCTGC 58.796 61.111 0.00 0.00 43.05 4.85
39 40 1.772836 AATCAGGCTCCTCAAATGCC 58.227 50.000 0.00 0.00 46.42 4.40
40 41 2.737679 GCAAATCAGGCTCCTCAAATGC 60.738 50.000 0.00 0.00 0.00 3.56
41 42 2.758979 AGCAAATCAGGCTCCTCAAATG 59.241 45.455 0.00 0.00 36.81 2.32
42 43 2.758979 CAGCAAATCAGGCTCCTCAAAT 59.241 45.455 0.00 0.00 40.23 2.32
43 44 2.165167 CAGCAAATCAGGCTCCTCAAA 58.835 47.619 0.00 0.00 40.23 2.69
44 45 1.352017 TCAGCAAATCAGGCTCCTCAA 59.648 47.619 0.00 0.00 40.23 3.02
45 46 0.986527 TCAGCAAATCAGGCTCCTCA 59.013 50.000 0.00 0.00 40.23 3.86
46 47 1.065564 ACTCAGCAAATCAGGCTCCTC 60.066 52.381 0.00 0.00 40.23 3.71
47 48 0.990374 ACTCAGCAAATCAGGCTCCT 59.010 50.000 0.00 0.00 40.23 3.69
48 49 1.065564 AGACTCAGCAAATCAGGCTCC 60.066 52.381 0.00 0.00 40.23 4.70
49 50 2.008329 CAGACTCAGCAAATCAGGCTC 58.992 52.381 0.00 0.00 40.23 4.70
50 51 1.339824 CCAGACTCAGCAAATCAGGCT 60.340 52.381 0.00 0.00 43.77 4.58
51 52 1.093159 CCAGACTCAGCAAATCAGGC 58.907 55.000 0.00 0.00 0.00 4.85
52 53 1.093159 GCCAGACTCAGCAAATCAGG 58.907 55.000 0.00 0.00 0.00 3.86
53 54 1.738350 CAGCCAGACTCAGCAAATCAG 59.262 52.381 0.00 0.00 0.00 2.90
54 55 1.072806 ACAGCCAGACTCAGCAAATCA 59.927 47.619 0.00 0.00 0.00 2.57
55 56 1.818642 ACAGCCAGACTCAGCAAATC 58.181 50.000 0.00 0.00 0.00 2.17
56 57 2.568956 TCTACAGCCAGACTCAGCAAAT 59.431 45.455 0.00 0.00 0.00 2.32
57 58 1.970640 TCTACAGCCAGACTCAGCAAA 59.029 47.619 0.00 0.00 0.00 3.68
58 59 1.632589 TCTACAGCCAGACTCAGCAA 58.367 50.000 0.00 0.00 0.00 3.91
59 60 1.479730 CATCTACAGCCAGACTCAGCA 59.520 52.381 0.00 0.00 0.00 4.41
60 61 1.805871 GCATCTACAGCCAGACTCAGC 60.806 57.143 0.00 0.00 0.00 4.26
61 62 1.755959 AGCATCTACAGCCAGACTCAG 59.244 52.381 0.00 0.00 0.00 3.35
62 63 1.753649 GAGCATCTACAGCCAGACTCA 59.246 52.381 0.00 0.00 0.00 3.41
63 64 2.507339 GAGCATCTACAGCCAGACTC 57.493 55.000 0.00 0.00 0.00 3.36
71 72 9.143739 TGGCTATCCACATTAGAGCATCTACAG 62.144 44.444 0.00 0.00 42.10 2.74
72 73 7.427564 TGGCTATCCACATTAGAGCATCTACA 61.428 42.308 0.00 0.00 42.10 2.74
73 74 5.047021 TGGCTATCCACATTAGAGCATCTAC 60.047 44.000 0.00 0.00 42.10 2.59
74 75 5.086621 TGGCTATCCACATTAGAGCATCTA 58.913 41.667 0.00 0.00 40.28 1.98
75 76 3.906218 TGGCTATCCACATTAGAGCATCT 59.094 43.478 0.00 0.00 43.43 2.90
76 77 4.277515 TGGCTATCCACATTAGAGCATC 57.722 45.455 0.00 0.00 37.47 3.91
77 78 4.103785 AGTTGGCTATCCACATTAGAGCAT 59.896 41.667 0.00 0.00 43.33 3.79
78 79 3.455910 AGTTGGCTATCCACATTAGAGCA 59.544 43.478 0.00 0.00 43.33 4.26
79 80 4.078639 AGTTGGCTATCCACATTAGAGC 57.921 45.455 0.00 0.00 43.33 4.09
80 81 5.992217 GGTAAGTTGGCTATCCACATTAGAG 59.008 44.000 0.00 0.00 43.33 2.43
81 82 5.427157 TGGTAAGTTGGCTATCCACATTAGA 59.573 40.000 0.00 0.00 43.33 2.10
82 83 5.680619 TGGTAAGTTGGCTATCCACATTAG 58.319 41.667 0.00 0.00 43.33 1.73
83 84 5.702065 TGGTAAGTTGGCTATCCACATTA 57.298 39.130 0.00 0.00 43.33 1.90
84 85 4.584638 TGGTAAGTTGGCTATCCACATT 57.415 40.909 0.00 0.00 43.33 2.71
85 86 4.796110 ATGGTAAGTTGGCTATCCACAT 57.204 40.909 0.00 0.00 43.33 3.21
86 87 4.102524 CCTATGGTAAGTTGGCTATCCACA 59.897 45.833 0.00 0.00 43.33 4.17
87 88 4.102681 ACCTATGGTAAGTTGGCTATCCAC 59.897 45.833 0.00 0.00 36.62 4.02
88 89 4.303794 ACCTATGGTAAGTTGGCTATCCA 58.696 43.478 0.00 0.00 35.52 3.41
89 90 4.347000 TGACCTATGGTAAGTTGGCTATCC 59.653 45.833 0.00 0.00 35.25 2.59
90 91 5.546621 TGACCTATGGTAAGTTGGCTATC 57.453 43.478 0.00 0.00 35.25 2.08
91 92 5.665812 TCTTGACCTATGGTAAGTTGGCTAT 59.334 40.000 0.00 0.00 35.25 2.97
92 93 5.027460 TCTTGACCTATGGTAAGTTGGCTA 58.973 41.667 0.00 0.00 35.25 3.93
93 94 3.844211 TCTTGACCTATGGTAAGTTGGCT 59.156 43.478 0.00 0.00 35.25 4.75
94 95 4.216411 TCTTGACCTATGGTAAGTTGGC 57.784 45.455 0.00 0.00 35.25 4.52
95 96 5.126067 CCATCTTGACCTATGGTAAGTTGG 58.874 45.833 14.26 14.26 38.28 3.77
96 97 4.576463 GCCATCTTGACCTATGGTAAGTTG 59.424 45.833 0.00 0.00 43.87 3.16
97 98 4.227300 TGCCATCTTGACCTATGGTAAGTT 59.773 41.667 0.00 0.00 43.87 2.66
98 99 3.780294 TGCCATCTTGACCTATGGTAAGT 59.220 43.478 0.00 0.00 43.87 2.24
99 100 4.422073 TGCCATCTTGACCTATGGTAAG 57.578 45.455 0.00 0.00 43.87 2.34
100 101 4.853468 TTGCCATCTTGACCTATGGTAA 57.147 40.909 0.00 0.00 43.03 2.85
101 102 4.446167 CCATTGCCATCTTGACCTATGGTA 60.446 45.833 0.00 0.00 43.87 3.25
102 103 3.559069 CATTGCCATCTTGACCTATGGT 58.441 45.455 0.00 0.00 43.87 3.55
103 104 2.889045 CCATTGCCATCTTGACCTATGG 59.111 50.000 0.00 0.00 44.64 2.74
106 107 1.215173 CCCCATTGCCATCTTGACCTA 59.785 52.381 0.00 0.00 0.00 3.08
109 110 1.818555 GCCCCATTGCCATCTTGAC 59.181 57.895 0.00 0.00 0.00 3.18
164 165 1.151361 ATACCCATCCCCATCCCCC 60.151 63.158 0.00 0.00 0.00 5.40
170 171 3.140144 GGATGAAAAGATACCCATCCCCA 59.860 47.826 0.00 0.00 45.67 4.96
194 195 3.230245 CCCAAAAACAGCCCCGCA 61.230 61.111 0.00 0.00 0.00 5.69
206 207 2.755655 CGGGTTGTATAATGTGCCCAAA 59.244 45.455 0.00 0.00 35.99 3.28
243 244 2.159000 GGGACTACCGAAATGGGTGTAG 60.159 54.545 0.00 0.00 44.64 2.74
292 293 8.352942 AGAATTCTTGGTTCACAAATGTAGTTC 58.647 33.333 0.88 0.00 38.91 3.01
323 758 7.936847 ACAAGATGTCCAATTACACAAGTTCTA 59.063 33.333 0.00 0.00 30.75 2.10
330 765 6.238897 GGTTCAACAAGATGTCCAATTACACA 60.239 38.462 0.00 0.00 30.75 3.72
331 766 6.149633 GGTTCAACAAGATGTCCAATTACAC 58.850 40.000 0.00 0.00 30.75 2.90
332 767 5.830457 TGGTTCAACAAGATGTCCAATTACA 59.170 36.000 0.00 0.00 0.00 2.41
333 768 6.325919 TGGTTCAACAAGATGTCCAATTAC 57.674 37.500 0.00 0.00 0.00 1.89
334 769 6.493115 ACATGGTTCAACAAGATGTCCAATTA 59.507 34.615 0.00 0.00 32.65 1.40
335 770 5.305128 ACATGGTTCAACAAGATGTCCAATT 59.695 36.000 0.00 0.00 32.65 2.32
336 771 4.834496 ACATGGTTCAACAAGATGTCCAAT 59.166 37.500 0.00 0.00 32.65 3.16
337 772 4.214310 ACATGGTTCAACAAGATGTCCAA 58.786 39.130 0.00 0.00 32.65 3.53
338 773 3.831323 ACATGGTTCAACAAGATGTCCA 58.169 40.909 0.00 0.00 33.11 4.02
339 774 5.647658 TCATACATGGTTCAACAAGATGTCC 59.352 40.000 0.00 0.00 0.00 4.02
340 775 6.372659 AGTCATACATGGTTCAACAAGATGTC 59.627 38.462 0.00 0.00 0.00 3.06
341 776 6.240894 AGTCATACATGGTTCAACAAGATGT 58.759 36.000 0.00 4.89 0.00 3.06
342 777 6.372381 TGAGTCATACATGGTTCAACAAGATG 59.628 38.462 0.00 0.00 0.00 2.90
343 778 6.475504 TGAGTCATACATGGTTCAACAAGAT 58.524 36.000 0.00 0.00 0.00 2.40
344 779 5.863965 TGAGTCATACATGGTTCAACAAGA 58.136 37.500 0.00 0.00 0.00 3.02
345 780 6.558771 TTGAGTCATACATGGTTCAACAAG 57.441 37.500 0.00 0.00 30.97 3.16
346 781 6.951062 TTTGAGTCATACATGGTTCAACAA 57.049 33.333 0.00 0.00 33.54 2.83
347 782 6.942005 AGATTTGAGTCATACATGGTTCAACA 59.058 34.615 0.00 0.00 33.54 3.33
348 783 7.119699 TCAGATTTGAGTCATACATGGTTCAAC 59.880 37.037 0.00 0.00 33.54 3.18
349 784 7.167535 TCAGATTTGAGTCATACATGGTTCAA 58.832 34.615 0.00 5.67 32.68 2.69
350 785 6.710278 TCAGATTTGAGTCATACATGGTTCA 58.290 36.000 0.00 0.00 0.00 3.18
351 786 7.496920 TGATCAGATTTGAGTCATACATGGTTC 59.503 37.037 0.00 0.00 36.61 3.62
352 787 7.341030 TGATCAGATTTGAGTCATACATGGTT 58.659 34.615 0.00 0.00 36.61 3.67
353 788 6.892485 TGATCAGATTTGAGTCATACATGGT 58.108 36.000 0.00 0.00 36.61 3.55
354 789 7.878644 AGATGATCAGATTTGAGTCATACATGG 59.121 37.037 0.09 0.00 36.61 3.66
355 790 8.834749 AGATGATCAGATTTGAGTCATACATG 57.165 34.615 0.09 0.00 36.61 3.21
356 791 9.848710 AAAGATGATCAGATTTGAGTCATACAT 57.151 29.630 0.09 0.00 36.61 2.29
357 792 9.106070 CAAAGATGATCAGATTTGAGTCATACA 57.894 33.333 22.12 0.00 36.61 2.29
358 793 9.107177 ACAAAGATGATCAGATTTGAGTCATAC 57.893 33.333 28.64 0.00 36.61 2.39
359 794 9.676861 AACAAAGATGATCAGATTTGAGTCATA 57.323 29.630 28.64 0.00 36.61 2.15
360 795 8.459635 CAACAAAGATGATCAGATTTGAGTCAT 58.540 33.333 28.64 12.79 36.61 3.06
361 796 7.574404 GCAACAAAGATGATCAGATTTGAGTCA 60.574 37.037 28.64 0.00 36.61 3.41
362 797 6.746364 GCAACAAAGATGATCAGATTTGAGTC 59.254 38.462 28.64 17.74 36.61 3.36
363 798 6.433404 AGCAACAAAGATGATCAGATTTGAGT 59.567 34.615 28.64 18.49 36.61 3.41
364 799 6.747739 CAGCAACAAAGATGATCAGATTTGAG 59.252 38.462 28.64 22.68 36.61 3.02
365 800 6.431852 TCAGCAACAAAGATGATCAGATTTGA 59.568 34.615 28.64 12.47 36.41 2.69
366 801 6.617879 TCAGCAACAAAGATGATCAGATTTG 58.382 36.000 23.73 23.73 38.35 2.32
367 802 6.829229 TCAGCAACAAAGATGATCAGATTT 57.171 33.333 0.09 1.75 0.00 2.17
368 803 6.829229 TTCAGCAACAAAGATGATCAGATT 57.171 33.333 0.09 0.00 33.44 2.40
369 804 6.829229 TTTCAGCAACAAAGATGATCAGAT 57.171 33.333 0.09 0.00 33.44 2.90
370 805 6.208007 ACATTTCAGCAACAAAGATGATCAGA 59.792 34.615 0.09 0.00 33.44 3.27
371 806 6.308041 CACATTTCAGCAACAAAGATGATCAG 59.692 38.462 0.09 0.00 33.44 2.90
372 807 6.153756 CACATTTCAGCAACAAAGATGATCA 58.846 36.000 0.00 0.00 33.44 2.92
373 808 5.575606 CCACATTTCAGCAACAAAGATGATC 59.424 40.000 0.00 0.00 33.44 2.92
374 809 5.011329 ACCACATTTCAGCAACAAAGATGAT 59.989 36.000 0.00 0.00 33.44 2.45
375 810 4.341806 ACCACATTTCAGCAACAAAGATGA 59.658 37.500 0.00 0.00 31.10 2.92
376 811 4.624015 ACCACATTTCAGCAACAAAGATG 58.376 39.130 0.00 0.00 0.00 2.90
377 812 4.942761 ACCACATTTCAGCAACAAAGAT 57.057 36.364 0.00 0.00 0.00 2.40
378 813 5.334802 CGATACCACATTTCAGCAACAAAGA 60.335 40.000 0.00 0.00 0.00 2.52
379 814 4.853196 CGATACCACATTTCAGCAACAAAG 59.147 41.667 0.00 0.00 0.00 2.77
380 815 4.277174 ACGATACCACATTTCAGCAACAAA 59.723 37.500 0.00 0.00 0.00 2.83
381 816 3.818210 ACGATACCACATTTCAGCAACAA 59.182 39.130 0.00 0.00 0.00 2.83
382 817 3.188254 CACGATACCACATTTCAGCAACA 59.812 43.478 0.00 0.00 0.00 3.33
383 818 3.747193 CACGATACCACATTTCAGCAAC 58.253 45.455 0.00 0.00 0.00 4.17
384 819 2.161410 GCACGATACCACATTTCAGCAA 59.839 45.455 0.00 0.00 0.00 3.91
385 820 1.737236 GCACGATACCACATTTCAGCA 59.263 47.619 0.00 0.00 0.00 4.41
386 821 2.009774 AGCACGATACCACATTTCAGC 58.990 47.619 0.00 0.00 0.00 4.26
387 822 2.223112 GCAGCACGATACCACATTTCAG 60.223 50.000 0.00 0.00 0.00 3.02
388 823 1.737236 GCAGCACGATACCACATTTCA 59.263 47.619 0.00 0.00 0.00 2.69
389 824 2.009774 AGCAGCACGATACCACATTTC 58.990 47.619 0.00 0.00 0.00 2.17
390 825 1.739466 CAGCAGCACGATACCACATTT 59.261 47.619 0.00 0.00 0.00 2.32
391 826 1.066215 TCAGCAGCACGATACCACATT 60.066 47.619 0.00 0.00 0.00 2.71
392 827 0.536724 TCAGCAGCACGATACCACAT 59.463 50.000 0.00 0.00 0.00 3.21
393 828 0.320050 TTCAGCAGCACGATACCACA 59.680 50.000 0.00 0.00 0.00 4.17
394 829 1.438651 TTTCAGCAGCACGATACCAC 58.561 50.000 0.00 0.00 0.00 4.16
395 830 2.401583 ATTTCAGCAGCACGATACCA 57.598 45.000 0.00 0.00 0.00 3.25
396 831 3.001330 GTGTATTTCAGCAGCACGATACC 59.999 47.826 0.00 0.00 0.00 2.73
397 832 3.865745 AGTGTATTTCAGCAGCACGATAC 59.134 43.478 0.00 0.00 35.46 2.24
398 833 4.112634 GAGTGTATTTCAGCAGCACGATA 58.887 43.478 0.00 0.00 35.46 2.92
399 834 2.932614 GAGTGTATTTCAGCAGCACGAT 59.067 45.455 0.00 0.00 35.46 3.73
400 835 2.029020 AGAGTGTATTTCAGCAGCACGA 60.029 45.455 0.00 0.00 35.46 4.35
401 836 2.341257 AGAGTGTATTTCAGCAGCACG 58.659 47.619 0.00 0.00 35.46 5.34
402 837 7.062839 GCTATATAGAGTGTATTTCAGCAGCAC 59.937 40.741 14.16 0.00 0.00 4.40
403 838 7.039434 AGCTATATAGAGTGTATTTCAGCAGCA 60.039 37.037 14.16 0.00 0.00 4.41
404 839 7.275341 CAGCTATATAGAGTGTATTTCAGCAGC 59.725 40.741 14.16 0.00 0.00 5.25
405 840 8.303156 ACAGCTATATAGAGTGTATTTCAGCAG 58.697 37.037 14.16 0.00 0.00 4.24
406 841 8.183104 ACAGCTATATAGAGTGTATTTCAGCA 57.817 34.615 14.16 0.00 0.00 4.41
407 842 8.920665 CAACAGCTATATAGAGTGTATTTCAGC 58.079 37.037 14.16 0.00 0.00 4.26
411 846 9.765795 GGTTCAACAGCTATATAGAGTGTATTT 57.234 33.333 14.16 0.00 0.00 1.40
412 847 8.924303 TGGTTCAACAGCTATATAGAGTGTATT 58.076 33.333 14.16 0.00 0.00 1.89
413 848 8.478775 TGGTTCAACAGCTATATAGAGTGTAT 57.521 34.615 14.16 4.81 0.00 2.29
414 849 7.891498 TGGTTCAACAGCTATATAGAGTGTA 57.109 36.000 14.16 0.00 0.00 2.90
415 850 6.791867 TGGTTCAACAGCTATATAGAGTGT 57.208 37.500 14.16 12.21 0.00 3.55
416 851 6.870965 GGATGGTTCAACAGCTATATAGAGTG 59.129 42.308 14.16 11.60 0.00 3.51
417 852 6.554982 TGGATGGTTCAACAGCTATATAGAGT 59.445 38.462 14.16 8.04 0.00 3.24
418 853 6.870965 GTGGATGGTTCAACAGCTATATAGAG 59.129 42.308 14.16 7.42 0.00 2.43
419 854 6.554982 AGTGGATGGTTCAACAGCTATATAGA 59.445 38.462 14.16 0.00 0.00 1.98
420 855 6.763355 AGTGGATGGTTCAACAGCTATATAG 58.237 40.000 5.30 5.30 0.00 1.31
465 900 1.086696 TTCAGCGGCATAACTTGAGC 58.913 50.000 1.45 0.00 0.00 4.26
478 913 4.260656 GCGACAAAGAATAACATTTCAGCG 59.739 41.667 0.00 0.00 0.00 5.18
574 1031 1.595357 CTAGTTTTCCGCCCGTCCT 59.405 57.895 0.00 0.00 0.00 3.85
583 1040 1.086067 GTACGCGGGGCTAGTTTTCC 61.086 60.000 12.47 0.00 0.00 3.13
599 1056 1.153509 CCCGTTCCCATCACCGTAC 60.154 63.158 0.00 0.00 0.00 3.67
600 1057 0.903924 TTCCCGTTCCCATCACCGTA 60.904 55.000 0.00 0.00 0.00 4.02
614 1071 2.447586 TAAAACCGTCCCCGTTCCCG 62.448 60.000 0.00 0.00 0.00 5.14
615 1072 0.035152 ATAAAACCGTCCCCGTTCCC 60.035 55.000 0.00 0.00 0.00 3.97
616 1073 1.089112 CATAAAACCGTCCCCGTTCC 58.911 55.000 0.00 0.00 0.00 3.62
617 1074 2.097680 TCATAAAACCGTCCCCGTTC 57.902 50.000 0.00 0.00 0.00 3.95
618 1075 2.793288 ATCATAAAACCGTCCCCGTT 57.207 45.000 0.00 0.00 0.00 4.44
629 1086 5.395103 CCATCCCCGCAAGAAAATCATAAAA 60.395 40.000 0.00 0.00 43.02 1.52
645 1102 1.379843 CTTCCCAAACCCATCCCCG 60.380 63.158 0.00 0.00 0.00 5.73
672 1129 2.166829 CAATGGGGACGAAAACCATCA 58.833 47.619 0.00 0.00 43.88 3.07
678 1135 1.181786 GATGGCAATGGGGACGAAAA 58.818 50.000 0.00 0.00 0.00 2.29
689 1146 4.255510 ACCTATGGTTCAAGATGGCAAT 57.744 40.909 0.00 0.00 27.29 3.56
702 1159 5.339477 AGAAAGTGTACACCTACCTATGGT 58.661 41.667 22.28 0.00 40.16 3.55
703 1160 5.934402 AGAAAGTGTACACCTACCTATGG 57.066 43.478 22.28 0.00 0.00 2.74
705 1162 7.237055 AGGAAAAGAAAGTGTACACCTACCTAT 59.763 37.037 22.28 4.81 0.00 2.57
706 1163 6.556116 AGGAAAAGAAAGTGTACACCTACCTA 59.444 38.462 22.28 0.00 0.00 3.08
707 1164 5.368816 AGGAAAAGAAAGTGTACACCTACCT 59.631 40.000 22.28 16.39 0.00 3.08
708 1165 5.618236 AGGAAAAGAAAGTGTACACCTACC 58.382 41.667 22.28 14.79 0.00 3.18
709 1166 7.415229 CAAAGGAAAAGAAAGTGTACACCTAC 58.585 38.462 22.28 13.07 0.00 3.18
710 1167 6.038936 GCAAAGGAAAAGAAAGTGTACACCTA 59.961 38.462 22.28 0.00 0.00 3.08
711 1168 5.163550 GCAAAGGAAAAGAAAGTGTACACCT 60.164 40.000 22.28 6.87 0.00 4.00
712 1169 5.041287 GCAAAGGAAAAGAAAGTGTACACC 58.959 41.667 22.28 7.49 0.00 4.16
713 1170 5.891451 AGCAAAGGAAAAGAAAGTGTACAC 58.109 37.500 18.56 18.56 0.00 2.90
714 1171 5.885912 AGAGCAAAGGAAAAGAAAGTGTACA 59.114 36.000 0.00 0.00 0.00 2.90
715 1172 6.378710 AGAGCAAAGGAAAAGAAAGTGTAC 57.621 37.500 0.00 0.00 0.00 2.90
716 1173 7.339466 AGAAAGAGCAAAGGAAAAGAAAGTGTA 59.661 33.333 0.00 0.00 0.00 2.90
717 1174 5.921962 AAGAGCAAAGGAAAAGAAAGTGT 57.078 34.783 0.00 0.00 0.00 3.55
718 1175 6.474751 CAGAAAGAGCAAAGGAAAAGAAAGTG 59.525 38.462 0.00 0.00 0.00 3.16
719 1176 6.153510 ACAGAAAGAGCAAAGGAAAAGAAAGT 59.846 34.615 0.00 0.00 0.00 2.66
720 1177 6.567959 ACAGAAAGAGCAAAGGAAAAGAAAG 58.432 36.000 0.00 0.00 0.00 2.62
721 1178 6.530019 ACAGAAAGAGCAAAGGAAAAGAAA 57.470 33.333 0.00 0.00 0.00 2.52
722 1179 6.530019 AACAGAAAGAGCAAAGGAAAAGAA 57.470 33.333 0.00 0.00 0.00 2.52
723 1180 6.071391 ACAAACAGAAAGAGCAAAGGAAAAGA 60.071 34.615 0.00 0.00 0.00 2.52
724 1181 6.101997 ACAAACAGAAAGAGCAAAGGAAAAG 58.898 36.000 0.00 0.00 0.00 2.27
725 1182 6.036577 ACAAACAGAAAGAGCAAAGGAAAA 57.963 33.333 0.00 0.00 0.00 2.29
726 1183 5.659440 ACAAACAGAAAGAGCAAAGGAAA 57.341 34.783 0.00 0.00 0.00 3.13
727 1184 6.151985 TGTTACAAACAGAAAGAGCAAAGGAA 59.848 34.615 0.00 0.00 36.25 3.36
728 1185 5.650266 TGTTACAAACAGAAAGAGCAAAGGA 59.350 36.000 0.00 0.00 36.25 3.36
729 1186 5.890334 TGTTACAAACAGAAAGAGCAAAGG 58.110 37.500 0.00 0.00 36.25 3.11
760 1217 6.155393 ACAAACAGGGAACATGAGGTTAAAAA 59.845 34.615 0.00 0.00 40.63 1.94
761 1218 5.659079 ACAAACAGGGAACATGAGGTTAAAA 59.341 36.000 0.00 0.00 40.63 1.52
762 1219 5.205056 ACAAACAGGGAACATGAGGTTAAA 58.795 37.500 0.00 0.00 40.63 1.52
763 1220 4.798882 ACAAACAGGGAACATGAGGTTAA 58.201 39.130 0.00 0.00 40.63 2.01
764 1221 4.447138 ACAAACAGGGAACATGAGGTTA 57.553 40.909 0.00 0.00 40.63 2.85
765 1222 3.312736 ACAAACAGGGAACATGAGGTT 57.687 42.857 0.00 0.00 44.10 3.50
766 1223 3.312736 AACAAACAGGGAACATGAGGT 57.687 42.857 0.00 0.00 0.00 3.85
767 1224 5.982890 ATTAACAAACAGGGAACATGAGG 57.017 39.130 0.00 0.00 0.00 3.86
792 1249 8.646900 GGCAATGGTCCCATAATCTTTTATTAA 58.353 33.333 0.00 0.00 35.31 1.40
793 1250 8.010105 AGGCAATGGTCCCATAATCTTTTATTA 58.990 33.333 0.00 0.00 35.31 0.98
794 1251 6.845975 AGGCAATGGTCCCATAATCTTTTATT 59.154 34.615 0.00 0.00 35.31 1.40
795 1252 6.384603 AGGCAATGGTCCCATAATCTTTTAT 58.615 36.000 0.00 0.00 35.31 1.40
796 1253 5.776358 AGGCAATGGTCCCATAATCTTTTA 58.224 37.500 0.00 0.00 35.31 1.52
797 1254 4.623863 AGGCAATGGTCCCATAATCTTTT 58.376 39.130 0.00 0.00 35.31 2.27
798 1255 4.218312 GAGGCAATGGTCCCATAATCTTT 58.782 43.478 0.00 0.00 35.31 2.52
799 1256 3.205056 TGAGGCAATGGTCCCATAATCTT 59.795 43.478 0.00 0.00 35.31 2.40
800 1257 2.785269 TGAGGCAATGGTCCCATAATCT 59.215 45.455 0.00 0.00 35.31 2.40
801 1258 2.887152 GTGAGGCAATGGTCCCATAATC 59.113 50.000 0.00 0.00 35.31 1.75
802 1259 2.244510 TGTGAGGCAATGGTCCCATAAT 59.755 45.455 0.00 0.00 35.31 1.28
803 1260 1.638070 TGTGAGGCAATGGTCCCATAA 59.362 47.619 0.00 0.00 35.31 1.90
804 1261 1.212688 CTGTGAGGCAATGGTCCCATA 59.787 52.381 0.00 0.00 35.31 2.74
805 1262 0.033796 CTGTGAGGCAATGGTCCCAT 60.034 55.000 0.00 0.00 38.46 4.00
806 1263 1.379916 CTGTGAGGCAATGGTCCCA 59.620 57.895 0.00 0.00 0.00 4.37
807 1264 0.618458 TACTGTGAGGCAATGGTCCC 59.382 55.000 0.00 0.00 0.00 4.46
808 1265 1.003118 TGTACTGTGAGGCAATGGTCC 59.997 52.381 0.00 0.00 0.00 4.46
809 1266 2.472695 TGTACTGTGAGGCAATGGTC 57.527 50.000 0.00 0.00 0.00 4.02
810 1267 4.778213 ATATGTACTGTGAGGCAATGGT 57.222 40.909 0.00 0.00 0.00 3.55
811 1268 6.936335 TGAATATATGTACTGTGAGGCAATGG 59.064 38.462 0.00 0.00 0.00 3.16
812 1269 7.967890 TGAATATATGTACTGTGAGGCAATG 57.032 36.000 0.00 0.00 0.00 2.82
813 1270 8.978874 TTTGAATATATGTACTGTGAGGCAAT 57.021 30.769 0.00 0.00 0.00 3.56
814 1271 8.264347 TCTTTGAATATATGTACTGTGAGGCAA 58.736 33.333 0.00 0.00 0.00 4.52
815 1272 7.791029 TCTTTGAATATATGTACTGTGAGGCA 58.209 34.615 0.00 0.00 0.00 4.75
816 1273 8.662781 TTCTTTGAATATATGTACTGTGAGGC 57.337 34.615 0.00 0.00 0.00 4.70
826 1283 9.162764 ACGCAGTAGTTTTCTTTGAATATATGT 57.837 29.630 0.00 0.00 41.94 2.29
847 1304 8.832521 TCCTTTTACACCATTATTAATACGCAG 58.167 33.333 0.00 0.00 0.00 5.18
848 1305 8.614346 GTCCTTTTACACCATTATTAATACGCA 58.386 33.333 0.00 0.00 0.00 5.24
849 1306 8.071967 GGTCCTTTTACACCATTATTAATACGC 58.928 37.037 0.00 0.00 32.33 4.42
850 1307 9.333724 AGGTCCTTTTACACCATTATTAATACG 57.666 33.333 0.00 0.00 34.80 3.06
939 1396 3.063510 AGGGTTTAGGGCTTTCGTTAC 57.936 47.619 0.00 0.00 0.00 2.50
1071 1559 4.637534 TGCTGCTAGCTAGAAATCCAAAAG 59.362 41.667 25.15 0.30 42.97 2.27
1297 1789 2.034687 GCGCCATGCCCTCCATAT 59.965 61.111 0.00 0.00 37.76 1.78
1811 2303 0.758734 CCTTCCGGCACATATCAGGA 59.241 55.000 0.00 0.00 0.00 3.86
2663 3192 6.373779 TGTTTCAATCTCTTCGATCTTTTGC 58.626 36.000 0.00 0.00 0.00 3.68
2740 3269 1.662122 CGTCGGTTATTGTGGGCTAAC 59.338 52.381 0.00 0.00 0.00 2.34
2762 3291 9.071276 CACACTTATGGGCTAAATTCTGATTAT 57.929 33.333 0.00 0.00 0.00 1.28
2784 3313 7.327275 GCATAGTAGTATATCAAGAGCACACAC 59.673 40.741 0.00 0.00 0.00 3.82
2943 3486 9.389570 CCTTTTACTAAACAAAAACGAGGTATG 57.610 33.333 0.00 0.00 0.00 2.39
3017 3560 3.255725 TGACCGCGGTCTTGTTAATTAG 58.744 45.455 46.72 13.35 44.80 1.73
3034 3577 8.470002 AGTAATTAGAAATGCCTGATTTTGACC 58.530 33.333 0.00 0.00 34.18 4.02
3087 3630 1.661178 GCGAGTGCTGTCAATGTTGTG 60.661 52.381 0.00 0.00 38.39 3.33
3113 3656 0.252197 CAGGGGTAGCGGCTAAAACT 59.748 55.000 11.98 7.00 0.00 2.66
3115 3658 0.985760 TTCAGGGGTAGCGGCTAAAA 59.014 50.000 11.98 0.00 0.00 1.52
3369 3914 1.338200 ACGGATCTGAGGCTGAAACAC 60.338 52.381 9.00 0.00 0.00 3.32
3378 3923 0.101399 CTGGTTCGACGGATCTGAGG 59.899 60.000 9.00 0.00 0.00 3.86
3413 3958 5.105187 AGTCTGCTCTGCTATGAACATAACA 60.105 40.000 0.00 0.00 0.00 2.41
3429 3974 4.773323 AAAAATGGCAACTAGTCTGCTC 57.227 40.909 21.39 15.08 39.82 4.26
3458 4003 4.464069 AGAGACATAGAGGTTGAGTTGC 57.536 45.455 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.