Multiple sequence alignment - TraesCS5A01G056900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G056900 chr5A 100.000 3425 0 0 1 3425 53227496 53230920 0.000000e+00 6325
1 TraesCS5A01G056900 chr5A 91.414 990 69 11 1 985 611814403 611815381 0.000000e+00 1343
2 TraesCS5A01G056900 chr1B 93.325 2382 76 37 980 3317 684349211 684346869 0.000000e+00 3441
3 TraesCS5A01G056900 chr1D 94.431 1706 42 24 1034 2721 491941698 491940028 0.000000e+00 2575
4 TraesCS5A01G056900 chr1D 97.143 175 4 1 2780 2954 491940015 491939842 9.300000e-76 294
5 TraesCS5A01G056900 chr1D 99.219 128 1 0 3237 3364 491939753 491939626 7.390000e-57 231
6 TraesCS5A01G056900 chr1D 95.890 73 2 1 3160 3232 491939770 491939841 2.160000e-22 117
7 TraesCS5A01G056900 chr3A 94.040 990 48 9 1 985 290420915 290419932 0.000000e+00 1491
8 TraesCS5A01G056900 chr3A 92.105 988 64 12 1 983 606376172 606377150 0.000000e+00 1380
9 TraesCS5A01G056900 chr3A 91.608 989 65 12 1 983 109995908 109996884 0.000000e+00 1351
10 TraesCS5A01G056900 chr3A 91.414 990 69 12 1 985 464383363 464384341 0.000000e+00 1343
11 TraesCS5A01G056900 chr7A 92.929 990 57 13 1 985 608514786 608513805 0.000000e+00 1428
12 TraesCS5A01G056900 chr1A 91.700 988 66 11 1 983 16862348 16861372 0.000000e+00 1356
13 TraesCS5A01G056900 chr1A 88.344 163 13 2 1233 1395 589880699 589880543 1.250000e-44 191
14 TraesCS5A01G056900 chr4A 91.481 986 71 9 1 983 91893028 91892053 0.000000e+00 1343
15 TraesCS5A01G056900 chrUn 91.313 990 70 12 1 983 82233395 82232415 0.000000e+00 1338


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G056900 chr5A 53227496 53230920 3424 False 6325.000000 6325 100.000 1 3425 1 chr5A.!!$F1 3424
1 TraesCS5A01G056900 chr5A 611814403 611815381 978 False 1343.000000 1343 91.414 1 985 1 chr5A.!!$F2 984
2 TraesCS5A01G056900 chr1B 684346869 684349211 2342 True 3441.000000 3441 93.325 980 3317 1 chr1B.!!$R1 2337
3 TraesCS5A01G056900 chr1D 491939626 491941698 2072 True 1033.333333 2575 96.931 1034 3364 3 chr1D.!!$R1 2330
4 TraesCS5A01G056900 chr3A 290419932 290420915 983 True 1491.000000 1491 94.040 1 985 1 chr3A.!!$R1 984
5 TraesCS5A01G056900 chr3A 606376172 606377150 978 False 1380.000000 1380 92.105 1 983 1 chr3A.!!$F3 982
6 TraesCS5A01G056900 chr3A 109995908 109996884 976 False 1351.000000 1351 91.608 1 983 1 chr3A.!!$F1 982
7 TraesCS5A01G056900 chr3A 464383363 464384341 978 False 1343.000000 1343 91.414 1 985 1 chr3A.!!$F2 984
8 TraesCS5A01G056900 chr7A 608513805 608514786 981 True 1428.000000 1428 92.929 1 985 1 chr7A.!!$R1 984
9 TraesCS5A01G056900 chr1A 16861372 16862348 976 True 1356.000000 1356 91.700 1 983 1 chr1A.!!$R1 982
10 TraesCS5A01G056900 chr4A 91892053 91893028 975 True 1343.000000 1343 91.481 1 983 1 chr4A.!!$R1 982
11 TraesCS5A01G056900 chrUn 82232415 82233395 980 True 1338.000000 1338 91.313 1 983 1 chrUn.!!$R1 982

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
257 258 0.107654 GCGAAGTACCTGGGCTTCAT 60.108 55.000 23.42 0.3 40.63 2.57 F
896 911 1.005512 GCCGGCAAAAATCGGGTTT 60.006 52.632 24.80 0.0 45.75 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1987 2058 1.683629 GGGTGGATTTTACCATGCCGA 60.684 52.381 0.0 0.0 42.17 5.54 R
2811 2894 0.872388 GTAGGTCCACAGGTTTTGCG 59.128 55.000 0.0 0.0 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 4.075854 TACGCCAGCACGCCATCA 62.076 61.111 0.00 0.00 36.19 3.07
90 91 2.253758 GCTGTTCTTCACGCTGCCA 61.254 57.895 0.00 0.00 0.00 4.92
99 100 4.329545 ACGCTGCCAACCACCGAT 62.330 61.111 0.00 0.00 0.00 4.18
154 155 4.452733 GCTGGAAGTACGCCGCCT 62.453 66.667 10.87 0.00 35.30 5.52
159 160 1.141234 GAAGTACGCCGCCTAAGCT 59.859 57.895 0.00 0.00 36.60 3.74
193 194 1.380112 GCGTACTGGAGGAGGGAGT 60.380 63.158 0.00 0.00 0.00 3.85
202 203 3.827898 GGAGGGAGTGCTCGTCGG 61.828 72.222 0.00 0.00 0.00 4.79
256 257 1.295423 GCGAAGTACCTGGGCTTCA 59.705 57.895 23.42 0.00 40.63 3.02
257 258 0.107654 GCGAAGTACCTGGGCTTCAT 60.108 55.000 23.42 0.30 40.63 2.57
440 441 2.604686 TCTGGGGAAGCGCTCTGT 60.605 61.111 12.06 0.00 0.00 3.41
472 473 2.439701 CGGCGGTGGTAGAGAGGA 60.440 66.667 0.00 0.00 0.00 3.71
607 616 2.987752 GCTTTTATAGCCGCTCCGT 58.012 52.632 0.00 0.00 44.48 4.69
692 701 2.241941 TGAGGAATCAATGGCAAGGCTA 59.758 45.455 0.00 0.00 0.00 3.93
872 887 4.320928 CGCCGGCGCTGTTTTTGA 62.321 61.111 38.48 0.00 0.00 2.69
894 909 3.378602 GGCCGGCAAAAATCGGGT 61.379 61.111 30.85 0.00 45.75 5.28
896 911 1.005512 GCCGGCAAAAATCGGGTTT 60.006 52.632 24.80 0.00 45.75 3.27
899 914 1.813786 CCGGCAAAAATCGGGTTTCTA 59.186 47.619 0.00 0.00 42.32 2.10
909 925 1.821258 GGGTTTCTAGGGACGCGAT 59.179 57.895 15.93 0.00 0.00 4.58
959 977 1.341080 AAACACATGGGAAGGCCTTG 58.659 50.000 26.25 11.85 0.00 3.61
1001 1021 3.058708 CCCTTAAACCCGACGAAAGAAAC 60.059 47.826 0.00 0.00 0.00 2.78
1021 1044 4.025401 AAAAAGCGGCGGCGTCAG 62.025 61.111 32.35 5.56 46.35 3.51
1022 1045 4.980805 AAAAGCGGCGGCGTCAGA 62.981 61.111 32.35 0.00 46.35 3.27
1023 1046 4.980805 AAAGCGGCGGCGTCAGAA 62.981 61.111 32.35 0.00 46.35 3.02
1029 1052 4.162690 GCGGCGTCAGAAGGGGAT 62.163 66.667 9.37 0.00 0.00 3.85
1033 1056 1.066587 GCGTCAGAAGGGGATCGAG 59.933 63.158 0.00 0.00 0.00 4.04
1034 1057 1.066587 CGTCAGAAGGGGATCGAGC 59.933 63.158 0.00 0.00 0.00 5.03
1036 1059 1.076995 TCAGAAGGGGATCGAGCGA 60.077 57.895 0.00 0.00 0.00 4.93
1038 1061 2.028337 GAAGGGGATCGAGCGAGC 59.972 66.667 0.00 0.00 0.00 5.03
1126 1149 4.808077 AATTTGCTATGCACATCTCTCG 57.192 40.909 0.00 0.00 38.71 4.04
1127 1150 3.525268 TTTGCTATGCACATCTCTCGA 57.475 42.857 0.00 0.00 38.71 4.04
1129 1152 3.740631 TGCTATGCACATCTCTCGATT 57.259 42.857 0.00 0.00 31.71 3.34
1130 1153 3.387397 TGCTATGCACATCTCTCGATTG 58.613 45.455 0.00 0.00 31.71 2.67
1131 1154 3.068590 TGCTATGCACATCTCTCGATTGA 59.931 43.478 0.00 0.00 31.71 2.57
1133 1156 4.689812 GCTATGCACATCTCTCGATTGATT 59.310 41.667 0.00 0.00 0.00 2.57
1134 1157 5.389620 GCTATGCACATCTCTCGATTGATTG 60.390 44.000 0.00 0.00 0.00 2.67
1135 1158 4.127566 TGCACATCTCTCGATTGATTGA 57.872 40.909 0.00 0.00 0.00 2.57
1432 1480 5.059833 CCTCCCAAGCTTTGCTAATACTAG 58.940 45.833 0.00 0.00 38.25 2.57
1438 1486 8.989980 CCCAAGCTTTGCTAATACTAGTAATAC 58.010 37.037 6.70 0.00 38.25 1.89
1441 1489 9.765795 AAGCTTTGCTAATACTAGTAATACAGG 57.234 33.333 6.70 0.00 38.25 4.00
1442 1490 9.144298 AGCTTTGCTAATACTAGTAATACAGGA 57.856 33.333 6.70 0.64 36.99 3.86
1443 1491 9.413048 GCTTTGCTAATACTAGTAATACAGGAG 57.587 37.037 6.70 2.78 30.88 3.69
1465 1513 7.070571 AGGAGTACAGCTTTGCTATCTAGAAAT 59.929 37.037 0.00 0.00 36.40 2.17
1533 1585 3.694734 CCAATGCCTTTGCTAATGTACG 58.305 45.455 0.00 0.00 38.71 3.67
1939 1999 4.612264 AAACTTGGAGCTGCAATTCAAT 57.388 36.364 21.68 3.52 0.00 2.57
1940 2000 5.726980 AAACTTGGAGCTGCAATTCAATA 57.273 34.783 21.68 0.00 0.00 1.90
1941 2001 5.726980 AACTTGGAGCTGCAATTCAATAA 57.273 34.783 21.68 0.00 0.00 1.40
1942 2002 5.726980 ACTTGGAGCTGCAATTCAATAAA 57.273 34.783 21.68 0.00 0.00 1.40
1943 2003 5.473039 ACTTGGAGCTGCAATTCAATAAAC 58.527 37.500 21.68 0.00 0.00 2.01
1944 2004 5.244626 ACTTGGAGCTGCAATTCAATAAACT 59.755 36.000 21.68 0.00 0.00 2.66
1945 2005 5.063180 TGGAGCTGCAATTCAATAAACTG 57.937 39.130 5.01 0.00 0.00 3.16
2342 2424 0.036164 TTGTGAATGTGCCTACCGCT 59.964 50.000 0.00 0.00 38.78 5.52
2450 2532 4.939052 ATAACTAGCTATTGGTCGCTGT 57.061 40.909 0.00 0.00 37.05 4.40
2451 2533 6.401047 AATAACTAGCTATTGGTCGCTGTA 57.599 37.500 0.00 0.00 37.05 2.74
2636 2718 4.732784 CAGCGCTTATCTTCCTCTATCTC 58.267 47.826 7.50 0.00 0.00 2.75
2646 2728 6.707440 TCTTCCTCTATCTCTGAATGTCAC 57.293 41.667 0.00 0.00 0.00 3.67
2668 2750 6.014584 TCACTTCTCTTGCTGATTAGTTGGTA 60.015 38.462 0.00 0.00 0.00 3.25
2775 2858 2.223805 GGTTTTGCAGTGGTTCTCTTGG 60.224 50.000 0.00 0.00 0.00 3.61
2811 2894 4.522789 TCAGAATTTGTTCTTAGGTTGCCC 59.477 41.667 0.00 0.00 0.00 5.36
2939 3022 4.556233 TGAGTCTTTACTGTCCACATTCG 58.444 43.478 0.00 0.00 35.56 3.34
2998 3081 1.421268 ACTCCAGCAGGACATGTTTCA 59.579 47.619 0.00 0.00 39.61 2.69
3148 3231 8.293867 CGTCAATTTCCACTAAATAAACTTCCA 58.706 33.333 0.00 0.00 36.76 3.53
3364 3466 7.658982 ACTTTATCATGCACTCCACATACTATG 59.341 37.037 0.00 0.00 0.00 2.23
3365 3467 5.813513 ATCATGCACTCCACATACTATGA 57.186 39.130 2.90 0.00 0.00 2.15
3366 3468 5.205759 TCATGCACTCCACATACTATGAG 57.794 43.478 2.90 0.00 0.00 2.90
3367 3469 4.651045 TCATGCACTCCACATACTATGAGT 59.349 41.667 2.90 0.00 38.56 3.41
3368 3470 5.129320 TCATGCACTCCACATACTATGAGTT 59.871 40.000 2.90 0.00 35.97 3.01
3369 3471 6.323739 TCATGCACTCCACATACTATGAGTTA 59.676 38.462 2.90 0.00 35.97 2.24
3370 3472 5.902681 TGCACTCCACATACTATGAGTTAC 58.097 41.667 2.90 0.00 35.97 2.50
3371 3473 5.656859 TGCACTCCACATACTATGAGTTACT 59.343 40.000 2.90 0.00 35.97 2.24
3372 3474 6.183360 TGCACTCCACATACTATGAGTTACTC 60.183 42.308 5.27 5.27 35.97 2.59
3373 3475 6.183360 GCACTCCACATACTATGAGTTACTCA 60.183 42.308 17.87 17.87 44.99 3.41
3374 3476 7.197017 CACTCCACATACTATGAGTTACTCAC 58.803 42.308 17.92 0.00 43.63 3.51
3375 3477 6.890268 ACTCCACATACTATGAGTTACTCACA 59.110 38.462 17.92 5.00 43.63 3.58
3376 3478 7.561722 ACTCCACATACTATGAGTTACTCACAT 59.438 37.037 17.92 5.45 43.63 3.21
3377 3479 8.990163 TCCACATACTATGAGTTACTCACATA 57.010 34.615 17.92 10.34 43.63 2.29
3378 3480 8.847196 TCCACATACTATGAGTTACTCACATAC 58.153 37.037 17.92 0.00 43.63 2.39
3379 3481 8.851145 CCACATACTATGAGTTACTCACATACT 58.149 37.037 17.92 3.92 43.63 2.12
3420 3522 9.220767 AGAAACTTGCAATACTTAACTAGAAGG 57.779 33.333 0.00 0.00 0.00 3.46
3421 3523 7.923414 AACTTGCAATACTTAACTAGAAGGG 57.077 36.000 0.00 0.00 0.00 3.95
3422 3524 6.415573 ACTTGCAATACTTAACTAGAAGGGG 58.584 40.000 0.00 0.00 0.00 4.79
3423 3525 4.777463 TGCAATACTTAACTAGAAGGGGC 58.223 43.478 0.00 0.00 0.00 5.80
3424 3526 4.226394 TGCAATACTTAACTAGAAGGGGCA 59.774 41.667 0.00 0.00 0.00 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
154 155 2.106074 CCGGCAATCACGCAGCTTA 61.106 57.895 0.00 0.00 0.00 3.09
184 185 2.752238 CGACGAGCACTCCCTCCT 60.752 66.667 0.00 0.00 0.00 3.69
256 257 2.182537 GTTACCCGACGCCGTGAT 59.817 61.111 0.00 0.00 0.00 3.06
257 258 4.403137 CGTTACCCGACGCCGTGA 62.403 66.667 0.00 0.00 39.56 4.35
582 591 3.340789 GCTATAAAAGCCGGCCGG 58.659 61.111 40.26 40.26 46.25 6.13
785 794 2.277834 CGAACTGTTTTGGCACGAAAAC 59.722 45.455 12.39 12.39 43.33 2.43
870 885 3.740495 TTTTTGCCGGCCTGGGTCA 62.740 57.895 26.77 0.00 38.63 4.02
872 887 2.203773 ATTTTTGCCGGCCTGGGT 60.204 55.556 26.77 4.17 38.63 4.51
894 909 0.177141 CCCAATCGCGTCCCTAGAAA 59.823 55.000 5.77 0.00 0.00 2.52
896 911 2.792947 GCCCAATCGCGTCCCTAGA 61.793 63.158 5.77 0.00 0.00 2.43
944 962 1.304713 CAGCAAGGCCTTCCCATGT 60.305 57.895 17.29 0.00 35.39 3.21
946 964 2.361771 CCAGCAAGGCCTTCCCAT 59.638 61.111 17.29 0.00 35.39 4.00
1020 1043 2.494530 GCTCGCTCGATCCCCTTCT 61.495 63.158 0.00 0.00 0.00 2.85
1021 1044 2.028337 GCTCGCTCGATCCCCTTC 59.972 66.667 0.00 0.00 0.00 3.46
1022 1045 2.759973 TGCTCGCTCGATCCCCTT 60.760 61.111 0.00 0.00 0.00 3.95
1023 1046 3.222855 CTGCTCGCTCGATCCCCT 61.223 66.667 0.00 0.00 0.00 4.79
1025 1048 2.786495 TTCCTGCTCGCTCGATCCC 61.786 63.158 0.00 0.00 0.00 3.85
1027 1050 1.590259 GGTTCCTGCTCGCTCGATC 60.590 63.158 0.00 0.00 0.00 3.69
1029 1052 2.831894 TAGGGTTCCTGCTCGCTCGA 62.832 60.000 0.00 0.00 34.61 4.04
1033 1056 1.300481 GATTTAGGGTTCCTGCTCGC 58.700 55.000 0.00 0.00 34.61 5.03
1034 1057 1.475213 GGGATTTAGGGTTCCTGCTCG 60.475 57.143 0.00 0.00 34.61 5.03
1036 1059 1.681229 TGGGATTTAGGGTTCCTGCT 58.319 50.000 0.00 0.00 34.61 4.24
1038 1061 3.214328 CGATTGGGATTTAGGGTTCCTG 58.786 50.000 0.00 0.00 34.61 3.86
1210 1241 2.439104 GCCGAGCCTCTCCAATCCT 61.439 63.158 0.00 0.00 0.00 3.24
1211 1242 2.110006 GCCGAGCCTCTCCAATCC 59.890 66.667 0.00 0.00 0.00 3.01
1212 1243 2.279784 CGCCGAGCCTCTCCAATC 60.280 66.667 0.00 0.00 0.00 2.67
1213 1244 3.854669 CCGCCGAGCCTCTCCAAT 61.855 66.667 0.00 0.00 0.00 3.16
1432 1480 5.420409 AGCAAAGCTGTACTCCTGTATTAC 58.580 41.667 0.00 0.00 37.57 1.89
1438 1486 4.399004 AGATAGCAAAGCTGTACTCCTG 57.601 45.455 1.04 0.00 40.10 3.86
1440 1488 5.776173 TCTAGATAGCAAAGCTGTACTCC 57.224 43.478 1.04 0.00 40.10 3.85
1441 1489 9.921637 ATATTTCTAGATAGCAAAGCTGTACTC 57.078 33.333 1.04 0.00 40.10 2.59
1442 1490 9.921637 GATATTTCTAGATAGCAAAGCTGTACT 57.078 33.333 1.04 0.00 40.10 2.73
1443 1491 9.698309 TGATATTTCTAGATAGCAAAGCTGTAC 57.302 33.333 1.04 0.00 40.10 2.90
1465 1513 7.008021 TGCATCTATTGGCTCTTGTATGATA 57.992 36.000 0.00 0.00 0.00 2.15
1818 1878 4.998051 GGGGATTTTGCCCTGAATAGATA 58.002 43.478 0.00 0.00 45.75 1.98
1939 1999 7.001674 TGAGAAAGTTTAGGCCAATCAGTTTA 58.998 34.615 5.01 0.00 0.00 2.01
1940 2000 5.833131 TGAGAAAGTTTAGGCCAATCAGTTT 59.167 36.000 5.01 0.82 0.00 2.66
1941 2001 5.385198 TGAGAAAGTTTAGGCCAATCAGTT 58.615 37.500 5.01 0.00 0.00 3.16
1942 2002 4.985538 TGAGAAAGTTTAGGCCAATCAGT 58.014 39.130 5.01 0.00 0.00 3.41
1943 2003 5.163581 CCATGAGAAAGTTTAGGCCAATCAG 60.164 44.000 5.01 0.00 0.00 2.90
1944 2004 4.706476 CCATGAGAAAGTTTAGGCCAATCA 59.294 41.667 5.01 0.00 0.00 2.57
1945 2005 4.440663 GCCATGAGAAAGTTTAGGCCAATC 60.441 45.833 5.01 0.00 34.71 2.67
1987 2058 1.683629 GGGTGGATTTTACCATGCCGA 60.684 52.381 0.00 0.00 42.17 5.54
2342 2424 7.956420 ACATAATTAAACAGAGACGACAACA 57.044 32.000 0.00 0.00 0.00 3.33
2626 2708 6.430864 AGAAGTGACATTCAGAGATAGAGGA 58.569 40.000 0.00 0.00 0.00 3.71
2636 2718 4.313282 TCAGCAAGAGAAGTGACATTCAG 58.687 43.478 0.00 0.00 0.00 3.02
2646 2728 6.199908 CGATACCAACTAATCAGCAAGAGAAG 59.800 42.308 0.00 0.00 0.00 2.85
2668 2750 7.819900 GGCATCTACTTATTTAATCAGGACGAT 59.180 37.037 0.00 0.00 35.12 3.73
2692 2774 6.183360 GGAAATACATATATACAGCAACCGGC 60.183 42.308 0.00 0.00 45.30 6.13
2775 2858 8.406297 AGAACAAATTCTGAAACAAAGACTACC 58.594 33.333 0.00 0.00 43.86 3.18
2811 2894 0.872388 GTAGGTCCACAGGTTTTGCG 59.128 55.000 0.00 0.00 0.00 4.85
2939 3022 5.007332 ACGGTGTTCAAATGACTAGAAACAC 59.993 40.000 0.00 7.46 0.00 3.32
2998 3081 3.582208 AGCAATCTGGAGTTTCTGTCTCT 59.418 43.478 0.00 0.00 33.06 3.10
3069 3152 1.611491 GCAGGGATTTTCGGAAACACA 59.389 47.619 1.96 0.00 0.00 3.72
3148 3231 6.303839 TGTTCTGCCTATTAGGAAACTGTTT 58.696 36.000 14.16 5.29 43.88 2.83
3344 3446 4.651045 ACTCATAGTATGTGGAGTGCATGA 59.349 41.667 14.89 0.00 39.04 3.07
3394 3496 9.220767 CCTTCTAGTTAAGTATTGCAAGTTTCT 57.779 33.333 4.94 0.00 0.00 2.52
3395 3497 8.451748 CCCTTCTAGTTAAGTATTGCAAGTTTC 58.548 37.037 4.94 0.00 0.00 2.78
3396 3498 7.393515 CCCCTTCTAGTTAAGTATTGCAAGTTT 59.606 37.037 4.94 1.74 0.00 2.66
3397 3499 6.884836 CCCCTTCTAGTTAAGTATTGCAAGTT 59.115 38.462 4.94 0.89 0.00 2.66
3398 3500 6.415573 CCCCTTCTAGTTAAGTATTGCAAGT 58.584 40.000 4.94 0.00 0.00 3.16
3399 3501 5.297029 GCCCCTTCTAGTTAAGTATTGCAAG 59.703 44.000 4.94 0.00 0.00 4.01
3400 3502 5.190677 GCCCCTTCTAGTTAAGTATTGCAA 58.809 41.667 0.00 0.00 0.00 4.08
3401 3503 4.226394 TGCCCCTTCTAGTTAAGTATTGCA 59.774 41.667 0.00 0.00 0.00 4.08
3402 3504 4.777463 TGCCCCTTCTAGTTAAGTATTGC 58.223 43.478 0.00 0.00 0.00 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.