Multiple sequence alignment - TraesCS5A01G056700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G056700 chr5A 100.000 6555 0 0 1 6555 52853599 52860153 0.000000e+00 12105.0
1 TraesCS5A01G056700 chr5A 83.884 242 21 7 6284 6510 53192242 53192480 1.430000e-51 215.0
2 TraesCS5A01G056700 chr5A 81.452 248 21 15 1145 1378 575323203 575323439 5.220000e-41 180.0
3 TraesCS5A01G056700 chr5D 89.412 5799 318 129 42 5681 63509001 63514662 0.000000e+00 7035.0
4 TraesCS5A01G056700 chr5D 88.436 614 33 16 2276 2885 560844772 560844193 0.000000e+00 706.0
5 TraesCS5A01G056700 chr5D 83.766 462 30 18 6021 6454 63514749 63515193 4.760000e-106 396.0
6 TraesCS5A01G056700 chr5D 82.367 431 69 3 263 689 417045176 417044749 1.040000e-97 368.0
7 TraesCS5A01G056700 chr5D 88.614 202 23 0 5092 5293 457522859 457523060 5.080000e-61 246.0
8 TraesCS5A01G056700 chr5D 80.972 247 24 13 1145 1378 457517820 457518056 2.430000e-39 174.0
9 TraesCS5A01G056700 chr5D 88.542 96 11 0 6386 6481 63547872 63547967 4.150000e-22 117.0
10 TraesCS5A01G056700 chr5B 91.972 2728 100 44 2872 5522 67037456 67034771 0.000000e+00 3714.0
11 TraesCS5A01G056700 chr5B 86.878 1387 93 37 821 2151 67039444 67038091 0.000000e+00 1471.0
12 TraesCS5A01G056700 chr5B 90.323 713 31 17 2180 2885 67038095 67037414 0.000000e+00 900.0
13 TraesCS5A01G056700 chr5B 86.162 766 36 30 2276 3034 533945792 533945090 0.000000e+00 763.0
14 TraesCS5A01G056700 chr5B 92.667 450 21 11 2068 2512 30021316 30021758 7.170000e-179 638.0
15 TraesCS5A01G056700 chr5B 84.810 553 43 17 6021 6538 67034138 67033592 9.740000e-143 518.0
16 TraesCS5A01G056700 chr5B 91.556 225 9 8 2071 2290 395476484 395476265 1.070000e-77 302.0
17 TraesCS5A01G056700 chr5B 90.860 186 17 0 5092 5277 559462346 559462531 3.920000e-62 250.0
18 TraesCS5A01G056700 chr5B 92.199 141 9 1 5543 5681 67034353 67034213 1.440000e-46 198.0
19 TraesCS5A01G056700 chr5B 81.781 247 22 11 1145 1378 559457063 559457299 1.120000e-42 185.0
20 TraesCS5A01G056700 chr5B 90.909 44 3 1 6439 6481 67024327 67024284 2.550000e-04 58.4
21 TraesCS5A01G056700 chr7D 89.414 614 27 16 2276 2885 143316768 143316189 0.000000e+00 739.0
22 TraesCS5A01G056700 chr7D 88.925 614 30 16 2276 2885 143349596 143349017 0.000000e+00 723.0
23 TraesCS5A01G056700 chr7D 92.715 302 17 5 5725 6026 585392482 585392186 1.310000e-116 431.0
24 TraesCS5A01G056700 chr7D 89.157 166 13 3 2872 3034 558367170 558367333 1.110000e-47 202.0
25 TraesCS5A01G056700 chr7B 88.436 614 34 16 2276 2885 585075801 585076381 0.000000e+00 706.0
26 TraesCS5A01G056700 chr7B 82.212 669 92 12 39 693 243912915 243912260 9.610000e-153 551.0
27 TraesCS5A01G056700 chr7B 79.521 376 64 10 42 410 198537639 198538008 8.430000e-64 255.0
28 TraesCS5A01G056700 chr4A 93.289 447 20 8 2071 2512 675415132 675414691 0.000000e+00 651.0
29 TraesCS5A01G056700 chr4A 94.118 289 15 2 5736 6024 11843047 11842761 7.800000e-119 438.0
30 TraesCS5A01G056700 chr4A 91.139 316 22 5 5717 6030 721419125 721419436 2.190000e-114 424.0
31 TraesCS5A01G056700 chr4A 88.406 69 4 2 1852 1916 663200206 663200138 5.450000e-11 80.5
32 TraesCS5A01G056700 chr6D 85.133 639 78 6 52 686 441667678 441668303 7.170000e-179 638.0
33 TraesCS5A01G056700 chr6D 82.462 650 85 10 55 688 39575943 39575307 5.780000e-150 542.0
34 TraesCS5A01G056700 chr6D 94.904 157 8 0 2729 2885 76349757 76349601 5.080000e-61 246.0
35 TraesCS5A01G056700 chr3D 82.362 652 87 14 42 689 105888307 105887680 5.780000e-150 542.0
36 TraesCS5A01G056700 chr3D 86.216 399 54 1 42 440 106734097 106733700 1.310000e-116 431.0
37 TraesCS5A01G056700 chr3D 79.576 377 53 15 317 687 553404353 553404711 1.410000e-61 248.0
38 TraesCS5A01G056700 chr7A 81.464 642 94 14 38 672 727202695 727202072 2.730000e-138 503.0
39 TraesCS5A01G056700 chr7A 94.118 289 16 1 5736 6024 170685626 170685913 7.800000e-119 438.0
40 TraesCS5A01G056700 chr2A 82.137 571 79 14 125 689 498589804 498590357 9.950000e-128 468.0
41 TraesCS5A01G056700 chr2A 92.759 290 20 1 5735 6024 753401362 753401650 1.020000e-112 418.0
42 TraesCS5A01G056700 chr3A 82.798 529 71 11 76 604 1597579 1598087 7.750000e-124 455.0
43 TraesCS5A01G056700 chr3A 78.571 98 20 1 684 781 1598631 1598727 5.490000e-06 63.9
44 TraesCS5A01G056700 chr3B 94.810 289 14 1 5736 6024 17350286 17350573 3.600000e-122 449.0
45 TraesCS5A01G056700 chr3B 94.237 295 15 2 5728 6022 776467631 776467923 3.600000e-122 449.0
46 TraesCS5A01G056700 chr3B 91.667 228 11 6 2068 2290 760025028 760025252 6.380000e-80 309.0
47 TraesCS5A01G056700 chr3B 81.053 380 46 13 317 690 251785067 251784708 5.010000e-71 279.0
48 TraesCS5A01G056700 chr1B 93.878 294 16 2 5733 6026 687414941 687415232 6.030000e-120 442.0
49 TraesCS5A01G056700 chr6B 94.138 290 16 1 5738 6027 689209745 689209457 2.170000e-119 440.0
50 TraesCS5A01G056700 chr6B 90.667 225 12 7 2071 2290 105644230 105644010 2.310000e-74 291.0
51 TraesCS5A01G056700 chr2D 93.023 301 17 3 5728 6028 540821519 540821223 2.810000e-118 436.0
52 TraesCS5A01G056700 chr2D 85.838 346 46 3 47 391 356730299 356729956 1.340000e-96 364.0
53 TraesCS5A01G056700 chr2D 87.372 293 36 1 43 335 322811727 322812018 1.050000e-87 335.0
54 TraesCS5A01G056700 chr2D 82.011 378 52 9 317 690 8635495 8635860 2.300000e-79 307.0
55 TraesCS5A01G056700 chr2D 95.000 40 2 0 739 778 8636535 8636574 5.490000e-06 63.9
56 TraesCS5A01G056700 chr2B 86.364 396 52 2 43 437 592588371 592587977 1.310000e-116 431.0
57 TraesCS5A01G056700 chr4B 93.190 279 13 3 2238 2512 543723046 543723322 7.910000e-109 405.0
58 TraesCS5A01G056700 chr4B 90.351 228 14 6 2068 2290 546097540 546097764 6.430000e-75 292.0
59 TraesCS5A01G056700 chr4B 92.090 177 8 4 2238 2410 459191130 459191304 1.830000e-60 244.0
60 TraesCS5A01G056700 chr4B 92.857 126 8 1 2068 2193 543722927 543723051 1.450000e-41 182.0
61 TraesCS5A01G056700 chr4B 94.595 111 6 0 2402 2512 459192385 459192495 8.740000e-39 172.0
62 TraesCS5A01G056700 chr4B 91.270 126 10 1 2068 2193 459191011 459191135 3.140000e-38 171.0
63 TraesCS5A01G056700 chr4D 80.052 381 48 14 317 690 446649217 446648858 2.350000e-64 257.0
64 TraesCS5A01G056700 chr4D 80.672 357 42 13 317 666 446647851 446647515 1.090000e-62 252.0
65 TraesCS5A01G056700 chr1D 94.904 157 8 0 2729 2885 66589587 66589431 5.080000e-61 246.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G056700 chr5A 52853599 52860153 6554 False 12105.00 12105 100.0000 1 6555 1 chr5A.!!$F1 6554
1 TraesCS5A01G056700 chr5D 63509001 63515193 6192 False 3715.50 7035 86.5890 42 6454 2 chr5D.!!$F4 6412
2 TraesCS5A01G056700 chr5D 560844193 560844772 579 True 706.00 706 88.4360 2276 2885 1 chr5D.!!$R2 609
3 TraesCS5A01G056700 chr5B 67033592 67039444 5852 True 1360.20 3714 89.2364 821 6538 5 chr5B.!!$R4 5717
4 TraesCS5A01G056700 chr5B 533945090 533945792 702 True 763.00 763 86.1620 2276 3034 1 chr5B.!!$R3 758
5 TraesCS5A01G056700 chr7D 143316189 143316768 579 True 739.00 739 89.4140 2276 2885 1 chr7D.!!$R1 609
6 TraesCS5A01G056700 chr7D 143349017 143349596 579 True 723.00 723 88.9250 2276 2885 1 chr7D.!!$R2 609
7 TraesCS5A01G056700 chr7B 585075801 585076381 580 False 706.00 706 88.4360 2276 2885 1 chr7B.!!$F2 609
8 TraesCS5A01G056700 chr7B 243912260 243912915 655 True 551.00 551 82.2120 39 693 1 chr7B.!!$R1 654
9 TraesCS5A01G056700 chr6D 441667678 441668303 625 False 638.00 638 85.1330 52 686 1 chr6D.!!$F1 634
10 TraesCS5A01G056700 chr6D 39575307 39575943 636 True 542.00 542 82.4620 55 688 1 chr6D.!!$R1 633
11 TraesCS5A01G056700 chr3D 105887680 105888307 627 True 542.00 542 82.3620 42 689 1 chr3D.!!$R1 647
12 TraesCS5A01G056700 chr7A 727202072 727202695 623 True 503.00 503 81.4640 38 672 1 chr7A.!!$R1 634
13 TraesCS5A01G056700 chr2A 498589804 498590357 553 False 468.00 468 82.1370 125 689 1 chr2A.!!$F1 564
14 TraesCS5A01G056700 chr3A 1597579 1598727 1148 False 259.45 455 80.6845 76 781 2 chr3A.!!$F1 705
15 TraesCS5A01G056700 chr4D 446647515 446649217 1702 True 254.50 257 80.3620 317 690 2 chr4D.!!$R1 373

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
612 635 0.530211 TTGGCGTTCTTTCGTCGGAA 60.530 50.000 0.00 0.00 38.32 4.30 F
1035 1712 0.032815 GCATTACCTCCTCCTCGCTC 59.967 60.000 0.00 0.00 0.00 5.03 F
1387 2065 0.234884 CCACTCGGTGCGTTTCTTTC 59.765 55.000 0.00 0.00 31.34 2.62 F
2943 3839 1.027357 ATGCCACAGAATGATTCGGC 58.973 50.000 13.49 13.49 39.69 5.54 F
3361 4265 0.112995 TGGATGCAGCCCTTGTCTTT 59.887 50.000 20.33 0.00 0.00 2.52 F
3614 4528 0.827925 TCAGCTAGACCTATGCCCCG 60.828 60.000 0.00 0.00 0.00 5.73 F
5336 6471 1.301244 CGGAGGGCGATCTGATTGG 60.301 63.158 7.00 0.00 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1687 2412 0.173708 AAGGTTCTGGTCGAGATCGC 59.826 55.000 0.00 0.00 39.60 4.58 R
2603 3363 0.686789 GCCCAATCACCAGGCTTTTT 59.313 50.000 0.00 0.00 43.62 1.94 R
3320 4224 0.250513 GGCCTGCAAGCTACAGTACT 59.749 55.000 7.34 0.00 33.09 2.73 R
4738 5854 0.098200 CCTGCACATGATCAGCAACG 59.902 55.000 9.16 0.00 37.89 4.10 R
5322 6445 1.152881 AAGGCCAATCAGATCGCCC 60.153 57.895 5.01 2.40 42.66 6.13 R
5414 6549 3.202906 CTCAAGTCTAGACGAGAGAGGG 58.797 54.545 28.88 12.91 38.48 4.30 R
6188 7789 0.392998 CAACGGAACCATCCTCCAGG 60.393 60.000 0.00 0.00 44.17 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.972227 CAGACCCTCAAACGCCTG 58.028 61.111 0.00 0.00 0.00 4.85
18 19 2.032681 AGACCCTCAAACGCCTGC 59.967 61.111 0.00 0.00 0.00 4.85
19 20 3.423154 GACCCTCAAACGCCTGCG 61.423 66.667 10.40 10.40 46.03 5.18
21 22 4.697756 CCCTCAAACGCCTGCGGA 62.698 66.667 16.63 2.77 44.69 5.54
22 23 3.423154 CCTCAAACGCCTGCGGAC 61.423 66.667 16.63 0.00 44.69 4.79
23 24 2.664851 CTCAAACGCCTGCGGACA 60.665 61.111 16.63 0.00 44.69 4.02
24 25 2.954753 CTCAAACGCCTGCGGACAC 61.955 63.158 16.63 0.00 44.69 3.67
25 26 4.368808 CAAACGCCTGCGGACACG 62.369 66.667 16.63 0.00 44.69 4.49
110 111 4.220602 CCACATCCGTGTATCTCATATCCA 59.779 45.833 0.00 0.00 41.93 3.41
114 115 8.200120 CACATCCGTGTATCTCATATCCAATAT 58.800 37.037 0.00 0.00 38.41 1.28
115 116 8.200120 ACATCCGTGTATCTCATATCCAATATG 58.800 37.037 1.31 1.31 39.37 1.78
175 176 8.883954 ACTATGTAGATCATTGAACAGACATG 57.116 34.615 17.38 12.43 37.91 3.21
212 226 6.435277 AGAAATGCACATAAAGATCACCAACT 59.565 34.615 0.00 0.00 0.00 3.16
280 294 7.326789 CGACGGACAAGTTTAAACTAGATTACA 59.673 37.037 20.83 0.00 38.57 2.41
328 342 1.814248 GCGGAGTTTCACCACTTCCTT 60.814 52.381 0.00 0.00 0.00 3.36
369 385 4.436998 GCCGACGCAGCTGTAGGT 62.437 66.667 16.64 11.14 37.02 3.08
454 476 1.006571 GAAGCCGTCGTTGGAGTCA 60.007 57.895 0.00 0.00 0.00 3.41
509 531 4.087892 CCACCCTGTCCTGCTCCG 62.088 72.222 0.00 0.00 0.00 4.63
612 635 0.530211 TTGGCGTTCTTTCGTCGGAA 60.530 50.000 0.00 0.00 38.32 4.30
618 642 2.702751 TTCTTTCGTCGGAAGCGGCA 62.703 55.000 8.51 0.00 32.80 5.69
702 1364 1.370810 GTCCGGTTGGGTCGGTTTA 59.629 57.895 0.00 0.00 46.82 2.01
707 1370 2.351932 CCGGTTGGGTCGGTTTATTTTG 60.352 50.000 0.00 0.00 42.33 2.44
717 1380 3.500680 TCGGTTTATTTTGACCTGTCAGC 59.499 43.478 0.00 0.00 41.13 4.26
719 1382 3.252458 GGTTTATTTTGACCTGTCAGCGT 59.748 43.478 0.00 0.00 41.13 5.07
735 1398 2.361610 GTCCGGACGTCCTACCCA 60.362 66.667 30.92 8.25 0.00 4.51
772 1435 0.680280 TGAGAGGTCCGGCTGTAGAC 60.680 60.000 0.00 0.00 0.00 2.59
783 1446 3.187700 CGGCTGTAGACGCTCTTAATTT 58.812 45.455 0.00 0.00 40.91 1.82
796 1459 7.375053 ACGCTCTTAATTTCAATAAAAGGCAA 58.625 30.769 0.00 0.00 0.00 4.52
842 1505 7.643569 TGAAACATGCATGGAGTATTAATGT 57.356 32.000 29.41 3.37 0.00 2.71
866 1529 6.770746 ATTTCCACTCTGATCATCCAAAAG 57.229 37.500 0.00 0.00 0.00 2.27
867 1530 5.503634 TTCCACTCTGATCATCCAAAAGA 57.496 39.130 0.00 0.00 0.00 2.52
868 1531 4.836825 TCCACTCTGATCATCCAAAAGAC 58.163 43.478 0.00 0.00 0.00 3.01
869 1532 3.944015 CCACTCTGATCATCCAAAAGACC 59.056 47.826 0.00 0.00 0.00 3.85
870 1533 4.566278 CCACTCTGATCATCCAAAAGACCA 60.566 45.833 0.00 0.00 0.00 4.02
871 1534 5.005740 CACTCTGATCATCCAAAAGACCAA 58.994 41.667 0.00 0.00 0.00 3.67
872 1535 5.474532 CACTCTGATCATCCAAAAGACCAAA 59.525 40.000 0.00 0.00 0.00 3.28
873 1536 6.016024 CACTCTGATCATCCAAAAGACCAAAA 60.016 38.462 0.00 0.00 0.00 2.44
876 1539 7.230747 TCTGATCATCCAAAAGACCAAAACTA 58.769 34.615 0.00 0.00 0.00 2.24
986 1663 2.219449 ATAAAACCGCCCACTCCCCC 62.219 60.000 0.00 0.00 0.00 5.40
1029 1706 1.227674 CCGCAGCATTACCTCCTCC 60.228 63.158 0.00 0.00 0.00 4.30
1035 1712 0.032815 GCATTACCTCCTCCTCGCTC 59.967 60.000 0.00 0.00 0.00 5.03
1078 1756 4.664864 CACACACGCGCACGCATT 62.665 61.111 16.04 0.00 45.53 3.56
1386 2064 1.164041 CCCACTCGGTGCGTTTCTTT 61.164 55.000 0.00 0.00 31.34 2.52
1387 2065 0.234884 CCACTCGGTGCGTTTCTTTC 59.765 55.000 0.00 0.00 31.34 2.62
1388 2066 1.217882 CACTCGGTGCGTTTCTTTCT 58.782 50.000 0.00 0.00 0.00 2.52
1389 2067 1.597663 CACTCGGTGCGTTTCTTTCTT 59.402 47.619 0.00 0.00 0.00 2.52
1390 2068 2.031683 CACTCGGTGCGTTTCTTTCTTT 59.968 45.455 0.00 0.00 0.00 2.52
1391 2069 3.246699 CACTCGGTGCGTTTCTTTCTTTA 59.753 43.478 0.00 0.00 0.00 1.85
1393 2071 2.219216 TCGGTGCGTTTCTTTCTTTACG 59.781 45.455 0.00 0.00 37.09 3.18
1394 2072 2.660900 CGGTGCGTTTCTTTCTTTACGG 60.661 50.000 0.00 0.00 34.76 4.02
1395 2073 2.304413 GTGCGTTTCTTTCTTTACGGC 58.696 47.619 0.00 0.00 34.76 5.68
1437 2132 7.566658 TTTTTAATTGGGATGGGATTCAGTT 57.433 32.000 0.00 0.00 0.00 3.16
1440 2135 3.652057 TTGGGATGGGATTCAGTTCTC 57.348 47.619 0.00 0.00 0.00 2.87
1444 2139 2.105649 GGATGGGATTCAGTTCTCCTCC 59.894 54.545 0.00 0.00 0.00 4.30
1522 2220 6.397272 TGTTCATGGCATCCTGTTTTTATTC 58.603 36.000 0.00 0.00 0.00 1.75
1536 2234 9.158233 CCTGTTTTTATTCGACCAATTAGTAGA 57.842 33.333 0.00 0.00 0.00 2.59
1548 2246 8.993121 CGACCAATTAGTAGATGCTTTATTGAT 58.007 33.333 0.00 0.00 0.00 2.57
1617 2342 5.890985 TCAGGACAAGAAGAAACATCCAAAA 59.109 36.000 0.00 0.00 0.00 2.44
1637 2362 8.576442 TCCAAAATATGAGAGTCTTTTTGTTCC 58.424 33.333 19.28 0.00 36.18 3.62
1646 2371 4.266714 AGTCTTTTTGTTCCGTTTCTCCA 58.733 39.130 0.00 0.00 0.00 3.86
1660 2385 1.593196 TCTCCAGCAGGAAAACAACG 58.407 50.000 0.00 0.00 45.19 4.10
1687 2412 4.424061 TTTTTCCAATCGTGCTGATCAG 57.576 40.909 18.84 18.84 35.84 2.90
1697 2422 2.794941 GCTGATCAGCGATCTCGAC 58.205 57.895 30.64 3.71 45.29 4.20
1707 2435 1.799548 GCGATCTCGACCAGAACCTTC 60.800 57.143 3.33 0.00 43.02 3.46
1712 2440 2.299297 TCTCGACCAGAACCTTCTTTCC 59.701 50.000 0.00 0.00 34.74 3.13
1722 2450 5.772169 CAGAACCTTCTTTCCCTCTCAATTT 59.228 40.000 0.00 0.00 34.74 1.82
1740 2468 8.770828 TCTCAATTTGTTACTGCAGTTAACTAC 58.229 33.333 27.06 15.17 0.00 2.73
1741 2469 8.671384 TCAATTTGTTACTGCAGTTAACTACT 57.329 30.769 27.06 14.03 37.68 2.57
1742 2470 9.767228 TCAATTTGTTACTGCAGTTAACTACTA 57.233 29.630 27.06 9.70 34.56 1.82
1744 2472 7.647907 TTTGTTACTGCAGTTAACTACTAGC 57.352 36.000 27.06 8.22 34.56 3.42
1745 2473 6.335471 TGTTACTGCAGTTAACTACTAGCA 57.665 37.500 27.06 15.24 38.04 3.49
1754 2482 6.618805 GCAGTTAACTACTAGCAGTCTTTTGC 60.619 42.308 8.04 2.12 38.57 3.68
1764 2492 2.280183 GCAGTCTTTTGCGTAGAGATCG 59.720 50.000 0.00 0.00 33.90 3.69
1785 2513 7.979537 AGATCGTGTACTGCTGATTAACATTTA 59.020 33.333 0.00 0.00 0.00 1.40
1958 2686 4.322273 CCCCCTCTGCATTTTTCTTCTTTC 60.322 45.833 0.00 0.00 0.00 2.62
1996 2727 9.838339 TGAACTGCCAATTTCCTTTTTAATTAA 57.162 25.926 0.00 0.00 0.00 1.40
2025 2756 9.556772 TTATATATTAAAGGCCAGGCTAGTACT 57.443 33.333 12.43 0.00 0.00 2.73
2091 2844 3.607422 TGACTGCAACTCATTGAAACG 57.393 42.857 0.00 0.00 38.15 3.60
2099 2852 4.298332 CAACTCATTGAAACGAAAAGGGG 58.702 43.478 0.00 0.00 38.15 4.79
2100 2853 2.296190 ACTCATTGAAACGAAAAGGGGC 59.704 45.455 0.00 0.00 0.00 5.80
2101 2854 2.295909 CTCATTGAAACGAAAAGGGGCA 59.704 45.455 0.00 0.00 0.00 5.36
2102 2855 2.295909 TCATTGAAACGAAAAGGGGCAG 59.704 45.455 0.00 0.00 0.00 4.85
2103 2856 2.060050 TTGAAACGAAAAGGGGCAGA 57.940 45.000 0.00 0.00 0.00 4.26
2105 2858 1.953686 TGAAACGAAAAGGGGCAGAAG 59.046 47.619 0.00 0.00 0.00 2.85
2301 3058 9.582648 TTTTTAGGGTAGCTGTAAATTTCTTCT 57.417 29.630 0.00 0.00 0.00 2.85
2331 3088 7.250032 TCTAGTAGTACAACCTGTCAGACTA 57.750 40.000 0.00 0.00 0.00 2.59
2415 3172 8.403606 GGATACGGTAGATGAATTTAATACGG 57.596 38.462 0.00 0.00 0.00 4.02
2551 3308 9.391006 CTAATTAGGTAGGCATTTAACAGACAA 57.609 33.333 4.42 0.00 0.00 3.18
2719 3612 2.795329 TCCATGCCCTTGTCTTTCTTC 58.205 47.619 0.00 0.00 0.00 2.87
2853 3746 2.093288 GTCATGGTCCAGCAGATGAGAA 60.093 50.000 0.00 0.00 0.00 2.87
2857 3750 4.038271 TGGTCCAGCAGATGAGAATTTT 57.962 40.909 0.00 0.00 0.00 1.82
2876 3769 3.883830 TTTTTGTTGAGGCAAAGCAGA 57.116 38.095 0.00 0.00 39.20 4.26
2877 3770 4.405116 TTTTTGTTGAGGCAAAGCAGAT 57.595 36.364 0.00 0.00 39.20 2.90
2878 3771 3.374220 TTTGTTGAGGCAAAGCAGATG 57.626 42.857 0.00 0.00 33.91 2.90
2879 3772 2.275134 TGTTGAGGCAAAGCAGATGA 57.725 45.000 0.00 0.00 0.00 2.92
2880 3773 2.156917 TGTTGAGGCAAAGCAGATGAG 58.843 47.619 0.00 0.00 0.00 2.90
2881 3774 2.224597 TGTTGAGGCAAAGCAGATGAGA 60.225 45.455 0.00 0.00 0.00 3.27
2882 3775 2.816087 GTTGAGGCAAAGCAGATGAGAA 59.184 45.455 0.00 0.00 0.00 2.87
2883 3776 3.361281 TGAGGCAAAGCAGATGAGAAT 57.639 42.857 0.00 0.00 0.00 2.40
2884 3777 3.693807 TGAGGCAAAGCAGATGAGAATT 58.306 40.909 0.00 0.00 0.00 2.17
2885 3778 4.084287 TGAGGCAAAGCAGATGAGAATTT 58.916 39.130 0.00 0.00 0.00 1.82
2886 3779 4.525487 TGAGGCAAAGCAGATGAGAATTTT 59.475 37.500 0.00 0.00 0.00 1.82
2887 3780 5.011329 TGAGGCAAAGCAGATGAGAATTTTT 59.989 36.000 0.00 0.00 0.00 1.94
2888 3781 5.235516 AGGCAAAGCAGATGAGAATTTTTG 58.764 37.500 0.00 0.00 0.00 2.44
2889 3782 4.992951 GGCAAAGCAGATGAGAATTTTTGT 59.007 37.500 0.00 0.00 0.00 2.83
2890 3783 5.467735 GGCAAAGCAGATGAGAATTTTTGTT 59.532 36.000 0.00 0.00 0.00 2.83
2891 3784 6.360329 GCAAAGCAGATGAGAATTTTTGTTG 58.640 36.000 0.00 0.00 0.00 3.33
2892 3785 6.018507 GCAAAGCAGATGAGAATTTTTGTTGT 60.019 34.615 0.00 0.00 0.00 3.32
2914 3807 5.413833 TGTTGAGGAAAAGCAGATGAGAATC 59.586 40.000 0.00 0.00 0.00 2.52
2919 3812 4.507388 GGAAAAGCAGATGAGAATCGAGAG 59.493 45.833 0.00 0.00 38.61 3.20
2923 3816 2.741612 CAGATGAGAATCGAGAGGCAC 58.258 52.381 0.00 0.00 38.61 5.01
2943 3839 1.027357 ATGCCACAGAATGATTCGGC 58.973 50.000 13.49 13.49 39.69 5.54
3040 3939 2.695127 AGGAAGAGATGAGCTTGCTG 57.305 50.000 0.00 0.00 41.58 4.41
3041 3940 1.209990 AGGAAGAGATGAGCTTGCTGG 59.790 52.381 0.00 0.00 41.58 4.85
3254 4158 1.103398 AAACACTGCAGCCTGTCCAC 61.103 55.000 15.27 0.00 0.00 4.02
3320 4224 4.215399 GGATAAAAAGCAGCACACACTGTA 59.785 41.667 0.00 0.00 39.96 2.74
3321 4225 3.698029 AAAAAGCAGCACACACTGTAG 57.302 42.857 0.00 0.00 39.96 2.74
3322 4226 2.332063 AAAGCAGCACACACTGTAGT 57.668 45.000 0.00 0.00 39.96 2.73
3323 4227 3.469008 AAAGCAGCACACACTGTAGTA 57.531 42.857 0.00 0.00 39.96 1.82
3324 4228 2.440539 AGCAGCACACACTGTAGTAC 57.559 50.000 0.00 0.00 39.96 2.73
3361 4265 0.112995 TGGATGCAGCCCTTGTCTTT 59.887 50.000 20.33 0.00 0.00 2.52
3598 4512 1.091771 ACGCCTCGGCAATTCATCAG 61.092 55.000 8.87 0.00 42.06 2.90
3604 4518 2.799412 CTCGGCAATTCATCAGCTAGAC 59.201 50.000 0.00 0.00 0.00 2.59
3613 4527 1.277557 CATCAGCTAGACCTATGCCCC 59.722 57.143 0.00 0.00 0.00 5.80
3614 4528 0.827925 TCAGCTAGACCTATGCCCCG 60.828 60.000 0.00 0.00 0.00 5.73
3634 4570 4.133820 CCGGATAGGCACAATGATTTGTA 58.866 43.478 0.00 0.00 44.24 2.41
3636 4572 5.106555 CCGGATAGGCACAATGATTTGTATC 60.107 44.000 0.00 0.00 44.24 2.24
3689 4627 4.789784 GCGTGTGCTTTTAATTAGGAACA 58.210 39.130 0.00 0.00 38.39 3.18
3694 4632 6.640907 GTGTGCTTTTAATTAGGAACAACCAG 59.359 38.462 0.00 0.00 42.04 4.00
3713 4659 3.758554 CCAGACACTGTTCCCCAATTAAG 59.241 47.826 0.00 0.00 0.00 1.85
3745 4691 2.094286 TGGGCACTGACAAAAAGTGTTG 60.094 45.455 5.55 0.00 45.58 3.33
3850 4822 5.125356 TGATTGGTGATGGTGCTAATAGTG 58.875 41.667 0.00 0.00 0.00 2.74
3859 4831 4.331968 TGGTGCTAATAGTGTTTTCTGGG 58.668 43.478 0.00 0.00 0.00 4.45
3860 4832 3.694566 GGTGCTAATAGTGTTTTCTGGGG 59.305 47.826 0.00 0.00 0.00 4.96
3861 4833 3.694566 GTGCTAATAGTGTTTTCTGGGGG 59.305 47.826 0.00 0.00 0.00 5.40
4320 5429 2.796193 CCATCGGCGAGGACATGGA 61.796 63.158 24.40 0.00 38.52 3.41
4738 5854 4.060900 TGCTGTTCTGAATCTTCACTGAC 58.939 43.478 0.00 0.00 32.90 3.51
4744 5860 3.062763 CTGAATCTTCACTGACGTTGCT 58.937 45.455 0.00 0.00 32.90 3.91
4761 5877 1.489230 TGCTGATCATGTGCAGGATCT 59.511 47.619 21.97 0.00 45.74 2.75
4776 5892 3.512724 CAGGATCTTTGCATTGGAAGGTT 59.487 43.478 0.18 0.00 0.00 3.50
4829 5945 4.390297 GGTACATCTTCTTGCACTGTTCTC 59.610 45.833 0.00 0.00 0.00 2.87
4836 5952 3.320626 TCTTGCACTGTTCTCGATCTTG 58.679 45.455 0.00 0.00 0.00 3.02
4840 5956 5.576447 TGCACTGTTCTCGATCTTGTATA 57.424 39.130 0.00 0.00 0.00 1.47
4841 5957 6.149129 TGCACTGTTCTCGATCTTGTATAT 57.851 37.500 0.00 0.00 0.00 0.86
4842 5958 6.573434 TGCACTGTTCTCGATCTTGTATATT 58.427 36.000 0.00 0.00 0.00 1.28
4843 5959 7.712797 TGCACTGTTCTCGATCTTGTATATTA 58.287 34.615 0.00 0.00 0.00 0.98
4844 5960 8.360390 TGCACTGTTCTCGATCTTGTATATTAT 58.640 33.333 0.00 0.00 0.00 1.28
4845 5961 9.197694 GCACTGTTCTCGATCTTGTATATTATT 57.802 33.333 0.00 0.00 0.00 1.40
5080 6203 2.738521 CACTGACGCCGGAGTTGG 60.739 66.667 13.57 10.90 0.00 3.77
5311 6434 4.828925 TTCGCATGATCGCCGCCA 62.829 61.111 0.00 0.00 0.00 5.69
5336 6471 1.301244 CGGAGGGCGATCTGATTGG 60.301 63.158 7.00 0.00 0.00 3.16
5389 6524 5.516090 TGCTATTGTTTTCTTTGTTCCGAC 58.484 37.500 0.00 0.00 0.00 4.79
5400 6535 2.005370 TGTTCCGACCTCCTGTAAGT 57.995 50.000 0.00 0.00 0.00 2.24
5414 6549 7.501559 ACCTCCTGTAAGTTTTTAGTTTCTTCC 59.498 37.037 0.00 0.00 0.00 3.46
5517 6653 0.036388 AACCGTGGTAGCCTCATGTG 60.036 55.000 0.00 0.00 0.00 3.21
5522 6658 2.353307 CGTGGTAGCCTCATGTGTGTTA 60.353 50.000 0.00 0.00 0.00 2.41
5523 6659 3.000727 GTGGTAGCCTCATGTGTGTTAC 58.999 50.000 0.00 0.00 0.00 2.50
5524 6660 2.903784 TGGTAGCCTCATGTGTGTTACT 59.096 45.455 0.00 0.00 0.00 2.24
5526 6662 4.202419 TGGTAGCCTCATGTGTGTTACTTT 60.202 41.667 0.00 0.00 0.00 2.66
5527 6663 4.154195 GGTAGCCTCATGTGTGTTACTTTG 59.846 45.833 0.00 0.00 0.00 2.77
5529 6665 4.655963 AGCCTCATGTGTGTTACTTTGAT 58.344 39.130 0.00 0.00 0.00 2.57
5530 6666 4.697352 AGCCTCATGTGTGTTACTTTGATC 59.303 41.667 0.00 0.00 0.00 2.92
5531 6667 4.697352 GCCTCATGTGTGTTACTTTGATCT 59.303 41.667 0.00 0.00 0.00 2.75
5532 6668 5.874810 GCCTCATGTGTGTTACTTTGATCTA 59.125 40.000 0.00 0.00 0.00 1.98
5533 6669 6.036517 GCCTCATGTGTGTTACTTTGATCTAG 59.963 42.308 0.00 0.00 0.00 2.43
5534 6670 7.099764 CCTCATGTGTGTTACTTTGATCTAGT 58.900 38.462 6.36 6.36 0.00 2.57
5535 6671 8.251026 CCTCATGTGTGTTACTTTGATCTAGTA 58.749 37.037 0.00 0.00 0.00 1.82
5536 6672 9.639601 CTCATGTGTGTTACTTTGATCTAGTAA 57.360 33.333 13.57 13.57 36.13 2.24
5577 7112 4.999950 AGGAAGAACATCTCAACATGTCAC 59.000 41.667 0.00 0.00 35.87 3.67
5638 7174 2.694397 TGTAGGCTGGGCAGAATCTAT 58.306 47.619 0.00 0.00 0.00 1.98
5640 7176 4.231273 TGTAGGCTGGGCAGAATCTATTA 58.769 43.478 0.00 0.00 0.00 0.98
5654 7190 8.085720 CAGAATCTATTATCTGCAAGGTGAAG 57.914 38.462 0.00 0.00 36.92 3.02
5698 7268 2.270434 AAAGATCTCTGCCCCTACCA 57.730 50.000 0.00 0.00 0.00 3.25
5699 7269 2.270434 AAGATCTCTGCCCCTACCAA 57.730 50.000 0.00 0.00 0.00 3.67
5700 7270 2.503869 AGATCTCTGCCCCTACCAAT 57.496 50.000 0.00 0.00 0.00 3.16
5701 7271 2.053244 AGATCTCTGCCCCTACCAATG 58.947 52.381 0.00 0.00 0.00 2.82
5719 7289 2.532250 TGTGATCTAGCTCCTGGACA 57.468 50.000 0.00 0.00 0.00 4.02
5722 7292 2.360801 GTGATCTAGCTCCTGGACACTC 59.639 54.545 0.00 0.00 0.00 3.51
5724 7294 2.136298 TCTAGCTCCTGGACACTCAG 57.864 55.000 0.00 0.00 34.70 3.35
5740 7310 4.713814 ACACTCAGGATCAAGATGCTAAGA 59.286 41.667 8.52 1.11 37.39 2.10
5741 7311 5.163426 ACACTCAGGATCAAGATGCTAAGAG 60.163 44.000 8.52 11.48 37.39 2.85
5742 7312 4.344679 ACTCAGGATCAAGATGCTAAGAGG 59.655 45.833 17.21 3.03 37.39 3.69
5743 7313 3.645212 TCAGGATCAAGATGCTAAGAGGG 59.355 47.826 3.70 0.00 37.39 4.30
5744 7314 3.390639 CAGGATCAAGATGCTAAGAGGGT 59.609 47.826 3.70 0.00 37.39 4.34
5745 7315 3.390639 AGGATCAAGATGCTAAGAGGGTG 59.609 47.826 1.99 0.00 37.74 4.61
5746 7316 3.135530 GGATCAAGATGCTAAGAGGGTGT 59.864 47.826 0.00 0.00 0.00 4.16
5747 7317 4.384647 GGATCAAGATGCTAAGAGGGTGTT 60.385 45.833 0.00 0.00 0.00 3.32
5748 7318 4.640771 TCAAGATGCTAAGAGGGTGTTT 57.359 40.909 0.00 0.00 0.00 2.83
5749 7319 4.326826 TCAAGATGCTAAGAGGGTGTTTG 58.673 43.478 0.00 0.00 0.00 2.93
5750 7320 4.074970 CAAGATGCTAAGAGGGTGTTTGT 58.925 43.478 0.00 0.00 0.00 2.83
5751 7321 4.373156 AGATGCTAAGAGGGTGTTTGTT 57.627 40.909 0.00 0.00 0.00 2.83
5752 7322 4.729868 AGATGCTAAGAGGGTGTTTGTTT 58.270 39.130 0.00 0.00 0.00 2.83
5753 7323 5.140454 AGATGCTAAGAGGGTGTTTGTTTT 58.860 37.500 0.00 0.00 0.00 2.43
5754 7324 4.911514 TGCTAAGAGGGTGTTTGTTTTC 57.088 40.909 0.00 0.00 0.00 2.29
5755 7325 4.274147 TGCTAAGAGGGTGTTTGTTTTCA 58.726 39.130 0.00 0.00 0.00 2.69
5756 7326 4.338118 TGCTAAGAGGGTGTTTGTTTTCAG 59.662 41.667 0.00 0.00 0.00 3.02
5757 7327 4.261614 GCTAAGAGGGTGTTTGTTTTCAGG 60.262 45.833 0.00 0.00 0.00 3.86
5758 7328 2.666317 AGAGGGTGTTTGTTTTCAGGG 58.334 47.619 0.00 0.00 0.00 4.45
5759 7329 2.243736 AGAGGGTGTTTGTTTTCAGGGA 59.756 45.455 0.00 0.00 0.00 4.20
5760 7330 2.361119 GAGGGTGTTTGTTTTCAGGGAC 59.639 50.000 0.00 0.00 0.00 4.46
5761 7331 2.024369 AGGGTGTTTGTTTTCAGGGACT 60.024 45.455 0.00 0.00 43.88 3.85
5762 7332 2.764010 GGGTGTTTGTTTTCAGGGACTT 59.236 45.455 0.00 0.00 34.60 3.01
5763 7333 3.955551 GGGTGTTTGTTTTCAGGGACTTA 59.044 43.478 0.00 0.00 34.60 2.24
5764 7334 4.587262 GGGTGTTTGTTTTCAGGGACTTAT 59.413 41.667 0.00 0.00 34.60 1.73
5765 7335 5.069914 GGGTGTTTGTTTTCAGGGACTTATT 59.930 40.000 0.00 0.00 34.60 1.40
5766 7336 5.983118 GGTGTTTGTTTTCAGGGACTTATTG 59.017 40.000 0.00 0.00 34.60 1.90
5767 7337 5.983118 GTGTTTGTTTTCAGGGACTTATTGG 59.017 40.000 0.00 0.00 34.60 3.16
5768 7338 5.659079 TGTTTGTTTTCAGGGACTTATTGGT 59.341 36.000 0.00 0.00 34.60 3.67
5769 7339 6.155393 TGTTTGTTTTCAGGGACTTATTGGTT 59.845 34.615 0.00 0.00 34.60 3.67
5770 7340 6.800072 TTGTTTTCAGGGACTTATTGGTTT 57.200 33.333 0.00 0.00 34.60 3.27
5771 7341 7.899648 TTGTTTTCAGGGACTTATTGGTTTA 57.100 32.000 0.00 0.00 34.60 2.01
5772 7342 7.519032 TGTTTTCAGGGACTTATTGGTTTAG 57.481 36.000 0.00 0.00 34.60 1.85
5773 7343 6.492087 TGTTTTCAGGGACTTATTGGTTTAGG 59.508 38.462 0.00 0.00 34.60 2.69
5774 7344 4.855298 TCAGGGACTTATTGGTTTAGGG 57.145 45.455 0.00 0.00 34.60 3.53
5775 7345 4.440808 TCAGGGACTTATTGGTTTAGGGA 58.559 43.478 0.00 0.00 34.60 4.20
5776 7346 4.226620 TCAGGGACTTATTGGTTTAGGGAC 59.773 45.833 0.00 0.00 34.60 4.46
5777 7347 4.227527 CAGGGACTTATTGGTTTAGGGACT 59.772 45.833 0.00 0.00 39.39 3.85
5778 7348 4.856182 AGGGACTTATTGGTTTAGGGACTT 59.144 41.667 0.00 0.00 34.75 3.01
5779 7349 6.034003 AGGGACTTATTGGTTTAGGGACTTA 58.966 40.000 0.00 0.00 34.75 2.24
5780 7350 6.506413 AGGGACTTATTGGTTTAGGGACTTAA 59.494 38.462 0.00 0.00 34.75 1.85
5781 7351 7.018851 AGGGACTTATTGGTTTAGGGACTTAAA 59.981 37.037 0.00 0.00 34.75 1.52
5782 7352 7.670979 GGGACTTATTGGTTTAGGGACTTAAAA 59.329 37.037 0.00 0.00 41.75 1.52
5783 7353 9.081204 GGACTTATTGGTTTAGGGACTTAAAAA 57.919 33.333 0.00 0.00 41.75 1.94
5809 7379 8.798975 AGTCCCTATAAGTTCCATCTAAATCA 57.201 34.615 0.00 0.00 0.00 2.57
5810 7380 9.225682 AGTCCCTATAAGTTCCATCTAAATCAA 57.774 33.333 0.00 0.00 0.00 2.57
5811 7381 9.847224 GTCCCTATAAGTTCCATCTAAATCAAA 57.153 33.333 0.00 0.00 0.00 2.69
5812 7382 9.847224 TCCCTATAAGTTCCATCTAAATCAAAC 57.153 33.333 0.00 0.00 0.00 2.93
5813 7383 9.627123 CCCTATAAGTTCCATCTAAATCAAACA 57.373 33.333 0.00 0.00 0.00 2.83
5817 7387 7.693969 AAGTTCCATCTAAATCAAACAGGAG 57.306 36.000 0.00 0.00 0.00 3.69
5818 7388 6.183347 AGTTCCATCTAAATCAAACAGGAGG 58.817 40.000 0.00 0.00 0.00 4.30
5819 7389 5.116084 TCCATCTAAATCAAACAGGAGGG 57.884 43.478 0.00 0.00 0.00 4.30
5820 7390 4.788075 TCCATCTAAATCAAACAGGAGGGA 59.212 41.667 0.00 0.00 32.47 4.20
5821 7391 4.884164 CCATCTAAATCAAACAGGAGGGAC 59.116 45.833 0.00 0.00 0.00 4.46
5823 7393 5.843019 TCTAAATCAAACAGGAGGGACTT 57.157 39.130 0.00 0.00 41.55 3.01
5824 7394 6.945636 TCTAAATCAAACAGGAGGGACTTA 57.054 37.500 0.00 0.00 41.55 2.24
5825 7395 7.510675 TCTAAATCAAACAGGAGGGACTTAT 57.489 36.000 0.00 0.00 41.55 1.73
5826 7396 8.618240 TCTAAATCAAACAGGAGGGACTTATA 57.382 34.615 0.00 0.00 41.55 0.98
5827 7397 8.705594 TCTAAATCAAACAGGAGGGACTTATAG 58.294 37.037 0.00 0.00 41.55 1.31
5828 7398 5.896073 ATCAAACAGGAGGGACTTATAGG 57.104 43.478 0.00 0.00 41.55 2.57
5829 7399 4.037927 TCAAACAGGAGGGACTTATAGGG 58.962 47.826 0.00 0.00 41.55 3.53
5830 7400 4.037927 CAAACAGGAGGGACTTATAGGGA 58.962 47.826 0.00 0.00 41.55 4.20
5831 7401 3.331718 ACAGGAGGGACTTATAGGGAC 57.668 52.381 0.00 0.00 41.55 4.46
5832 7402 2.866454 ACAGGAGGGACTTATAGGGACT 59.134 50.000 0.00 0.00 41.55 3.85
5833 7403 3.275228 ACAGGAGGGACTTATAGGGACTT 59.725 47.826 0.00 0.00 41.55 3.01
5834 7404 4.485021 ACAGGAGGGACTTATAGGGACTTA 59.515 45.833 0.00 0.00 41.55 2.24
5835 7405 5.042827 ACAGGAGGGACTTATAGGGACTTAA 60.043 44.000 0.00 0.00 41.55 1.85
5836 7406 5.903589 CAGGAGGGACTTATAGGGACTTAAA 59.096 44.000 0.00 0.00 41.55 1.52
5837 7407 6.042208 CAGGAGGGACTTATAGGGACTTAAAG 59.958 46.154 0.00 0.00 41.55 1.85
5838 7408 5.904169 GGAGGGACTTATAGGGACTTAAAGT 59.096 44.000 0.00 0.00 42.31 2.66
5839 7409 6.183360 GGAGGGACTTATAGGGACTTAAAGTG 60.183 46.154 0.00 0.00 40.60 3.16
5840 7410 5.666265 AGGGACTTATAGGGACTTAAAGTGG 59.334 44.000 0.00 0.00 40.60 4.00
5841 7411 5.664457 GGGACTTATAGGGACTTAAAGTGGA 59.336 44.000 0.00 0.00 40.60 4.02
5842 7412 6.407865 GGGACTTATAGGGACTTAAAGTGGAC 60.408 46.154 0.00 0.00 40.60 4.02
5843 7413 6.155737 GGACTTATAGGGACTTAAAGTGGACA 59.844 42.308 0.00 0.00 40.60 4.02
5844 7414 7.147532 GGACTTATAGGGACTTAAAGTGGACAT 60.148 40.741 0.00 0.00 40.60 3.06
5845 7415 8.159229 ACTTATAGGGACTTAAAGTGGACATT 57.841 34.615 0.00 0.00 39.58 2.71
5846 7416 8.612145 ACTTATAGGGACTTAAAGTGGACATTT 58.388 33.333 0.00 0.00 39.58 2.32
5847 7417 8.801882 TTATAGGGACTTAAAGTGGACATTTG 57.198 34.615 0.00 0.00 41.75 2.32
5848 7418 4.407365 AGGGACTTAAAGTGGACATTTGG 58.593 43.478 0.00 0.00 27.25 3.28
5849 7419 3.509967 GGGACTTAAAGTGGACATTTGGG 59.490 47.826 0.00 0.00 0.00 4.12
5850 7420 4.403734 GGACTTAAAGTGGACATTTGGGA 58.596 43.478 0.00 0.00 0.00 4.37
5851 7421 5.016831 GGACTTAAAGTGGACATTTGGGAT 58.983 41.667 0.00 0.00 0.00 3.85
5852 7422 5.480422 GGACTTAAAGTGGACATTTGGGATT 59.520 40.000 0.00 0.00 0.00 3.01
5853 7423 6.014584 GGACTTAAAGTGGACATTTGGGATTT 60.015 38.462 0.00 0.00 0.00 2.17
5854 7424 7.177744 GGACTTAAAGTGGACATTTGGGATTTA 59.822 37.037 0.00 0.00 0.00 1.40
5855 7425 8.664669 ACTTAAAGTGGACATTTGGGATTTAT 57.335 30.769 0.00 0.00 0.00 1.40
5856 7426 8.531146 ACTTAAAGTGGACATTTGGGATTTATG 58.469 33.333 0.00 0.00 0.00 1.90
5857 7427 8.657387 TTAAAGTGGACATTTGGGATTTATGA 57.343 30.769 0.00 0.00 0.00 2.15
5858 7428 7.552050 AAAGTGGACATTTGGGATTTATGAA 57.448 32.000 0.00 0.00 0.00 2.57
5859 7429 7.552050 AAGTGGACATTTGGGATTTATGAAA 57.448 32.000 0.00 0.00 0.00 2.69
5860 7430 7.738437 AGTGGACATTTGGGATTTATGAAAT 57.262 32.000 0.00 0.00 0.00 2.17
5861 7431 8.837099 AGTGGACATTTGGGATTTATGAAATA 57.163 30.769 0.00 0.00 0.00 1.40
5862 7432 9.265862 AGTGGACATTTGGGATTTATGAAATAA 57.734 29.630 0.00 0.00 36.92 1.40
5877 7447 9.672673 TTTATGAAATAAAGACTCTCAAGGAGG 57.327 33.333 0.00 0.00 43.40 4.30
5878 7448 6.054860 TGAAATAAAGACTCTCAAGGAGGG 57.945 41.667 0.00 0.00 45.83 4.30
5879 7449 5.785423 TGAAATAAAGACTCTCAAGGAGGGA 59.215 40.000 0.00 0.00 45.83 4.20
5880 7450 5.685520 AATAAAGACTCTCAAGGAGGGAC 57.314 43.478 0.00 0.00 45.83 4.46
5881 7451 3.268034 AAAGACTCTCAAGGAGGGACT 57.732 47.619 0.00 0.00 45.83 3.85
5882 7452 3.268034 AAGACTCTCAAGGAGGGACTT 57.732 47.619 5.25 5.25 45.83 3.01
5883 7453 4.405756 AAGACTCTCAAGGAGGGACTTA 57.594 45.455 8.68 0.00 41.64 2.24
5884 7454 4.618378 AGACTCTCAAGGAGGGACTTAT 57.382 45.455 0.00 0.00 45.83 1.73
5885 7455 5.735733 AGACTCTCAAGGAGGGACTTATA 57.264 43.478 0.00 0.00 45.83 0.98
5886 7456 5.701224 AGACTCTCAAGGAGGGACTTATAG 58.299 45.833 0.00 0.00 45.83 1.31
5887 7457 4.810345 ACTCTCAAGGAGGGACTTATAGG 58.190 47.826 0.00 0.00 45.83 2.57
5888 7458 4.482772 ACTCTCAAGGAGGGACTTATAGGA 59.517 45.833 0.00 0.00 45.83 2.94
5889 7459 5.043281 ACTCTCAAGGAGGGACTTATAGGAA 60.043 44.000 0.00 0.00 45.83 3.36
5890 7460 5.209659 TCTCAAGGAGGGACTTATAGGAAC 58.790 45.833 0.00 0.00 41.55 3.62
5891 7461 5.043281 TCTCAAGGAGGGACTTATAGGAACT 60.043 44.000 0.00 0.00 41.55 3.01
5892 7462 5.600749 TCAAGGAGGGACTTATAGGAACTT 58.399 41.667 0.00 0.00 41.55 2.66
5893 7463 6.748969 TCAAGGAGGGACTTATAGGAACTTA 58.251 40.000 0.00 0.00 41.55 2.24
5894 7464 7.371043 TCAAGGAGGGACTTATAGGAACTTAT 58.629 38.462 0.00 0.00 41.55 1.73
5895 7465 8.517047 TCAAGGAGGGACTTATAGGAACTTATA 58.483 37.037 0.00 0.00 41.55 0.98
5896 7466 8.808092 CAAGGAGGGACTTATAGGAACTTATAG 58.192 40.741 0.00 0.00 41.55 1.31
5897 7467 8.071235 AGGAGGGACTTATAGGAACTTATAGT 57.929 38.462 0.00 0.00 41.55 2.12
5898 7468 8.521301 AGGAGGGACTTATAGGAACTTATAGTT 58.479 37.037 0.00 0.00 41.55 2.24
5899 7469 8.586744 GGAGGGACTTATAGGAACTTATAGTTG 58.413 40.741 0.00 0.00 41.55 3.16
5900 7470 9.145442 GAGGGACTTATAGGAACTTATAGTTGT 57.855 37.037 0.00 0.00 41.55 3.32
5941 7511 5.742063 ACTTATAAGTCCCACTAGCCAAAC 58.258 41.667 12.50 0.00 32.86 2.93
5942 7512 5.249852 ACTTATAAGTCCCACTAGCCAAACA 59.750 40.000 12.50 0.00 32.86 2.83
5943 7513 2.568623 AAGTCCCACTAGCCAAACAG 57.431 50.000 0.00 0.00 0.00 3.16
5944 7514 0.693049 AGTCCCACTAGCCAAACAGG 59.307 55.000 0.00 0.00 41.84 4.00
5945 7515 0.400594 GTCCCACTAGCCAAACAGGT 59.599 55.000 0.00 0.00 40.61 4.00
5946 7516 1.626825 GTCCCACTAGCCAAACAGGTA 59.373 52.381 0.00 0.00 40.61 3.08
5947 7517 1.906574 TCCCACTAGCCAAACAGGTAG 59.093 52.381 0.00 0.00 40.61 3.18
5948 7518 1.906574 CCCACTAGCCAAACAGGTAGA 59.093 52.381 4.89 0.00 40.61 2.59
5949 7519 2.093447 CCCACTAGCCAAACAGGTAGAG 60.093 54.545 4.89 0.00 40.61 2.43
5950 7520 2.832129 CCACTAGCCAAACAGGTAGAGA 59.168 50.000 4.89 0.00 40.61 3.10
5951 7521 3.368531 CCACTAGCCAAACAGGTAGAGAC 60.369 52.174 4.89 0.00 40.61 3.36
5952 7522 3.511934 CACTAGCCAAACAGGTAGAGACT 59.488 47.826 4.89 0.00 40.61 3.24
5953 7523 4.021016 CACTAGCCAAACAGGTAGAGACTT 60.021 45.833 4.89 0.00 40.61 3.01
5954 7524 4.593634 ACTAGCCAAACAGGTAGAGACTTT 59.406 41.667 4.89 0.00 40.61 2.66
5955 7525 4.439253 AGCCAAACAGGTAGAGACTTTT 57.561 40.909 0.00 0.00 40.61 2.27
5956 7526 4.793201 AGCCAAACAGGTAGAGACTTTTT 58.207 39.130 0.00 0.00 40.61 1.94
5957 7527 5.937111 AGCCAAACAGGTAGAGACTTTTTA 58.063 37.500 0.00 0.00 40.61 1.52
5958 7528 5.998363 AGCCAAACAGGTAGAGACTTTTTAG 59.002 40.000 0.00 0.00 40.61 1.85
5959 7529 5.181433 GCCAAACAGGTAGAGACTTTTTAGG 59.819 44.000 0.00 0.00 40.61 2.69
5960 7530 5.705905 CCAAACAGGTAGAGACTTTTTAGGG 59.294 44.000 0.00 0.00 0.00 3.53
5961 7531 6.465321 CCAAACAGGTAGAGACTTTTTAGGGA 60.465 42.308 0.00 0.00 0.00 4.20
5962 7532 5.741962 ACAGGTAGAGACTTTTTAGGGAC 57.258 43.478 0.00 0.00 0.00 4.46
5963 7533 5.404395 ACAGGTAGAGACTTTTTAGGGACT 58.596 41.667 0.00 0.00 46.37 3.85
5964 7534 5.845065 ACAGGTAGAGACTTTTTAGGGACTT 59.155 40.000 0.00 0.00 41.75 3.01
5965 7535 7.015064 ACAGGTAGAGACTTTTTAGGGACTTA 58.985 38.462 0.00 0.00 41.75 2.24
5966 7536 7.511714 ACAGGTAGAGACTTTTTAGGGACTTAA 59.488 37.037 0.00 0.00 41.75 1.85
5967 7537 8.035984 CAGGTAGAGACTTTTTAGGGACTTAAG 58.964 40.741 0.00 0.00 41.75 1.85
5968 7538 7.954620 AGGTAGAGACTTTTTAGGGACTTAAGA 59.045 37.037 10.09 0.00 41.75 2.10
5969 7539 8.034215 GGTAGAGACTTTTTAGGGACTTAAGAC 58.966 40.741 10.09 2.38 41.75 3.01
5970 7540 7.859026 AGAGACTTTTTAGGGACTTAAGACT 57.141 36.000 10.09 6.88 41.75 3.24
5971 7541 8.265108 AGAGACTTTTTAGGGACTTAAGACTT 57.735 34.615 10.09 0.75 41.75 3.01
5972 7542 9.377238 AGAGACTTTTTAGGGACTTAAGACTTA 57.623 33.333 10.09 0.00 41.75 2.24
5982 7552 8.896722 AGGGACTTAAGACTTATAAGTTGAGA 57.103 34.615 18.96 6.15 42.18 3.27
5983 7553 8.751242 AGGGACTTAAGACTTATAAGTTGAGAC 58.249 37.037 18.96 10.28 42.18 3.36
5984 7554 8.751242 GGGACTTAAGACTTATAAGTTGAGACT 58.249 37.037 18.96 8.54 42.18 3.24
6015 7585 5.801380 GTCCTAGGACTTATGAACCAAACA 58.199 41.667 31.12 0.00 41.57 2.83
6016 7586 5.875359 GTCCTAGGACTTATGAACCAAACAG 59.125 44.000 31.12 0.00 41.57 3.16
6017 7587 5.045869 TCCTAGGACTTATGAACCAAACAGG 60.046 44.000 7.62 0.00 45.67 4.00
6018 7588 4.034285 AGGACTTATGAACCAAACAGGG 57.966 45.455 0.00 0.00 43.89 4.45
6019 7589 2.492088 GGACTTATGAACCAAACAGGGC 59.508 50.000 0.00 0.00 43.89 5.19
6020 7590 2.492088 GACTTATGAACCAAACAGGGCC 59.508 50.000 0.00 0.00 43.89 5.80
6021 7591 2.110011 ACTTATGAACCAAACAGGGCCT 59.890 45.455 0.00 0.00 43.89 5.19
6022 7592 3.332485 ACTTATGAACCAAACAGGGCCTA 59.668 43.478 5.28 0.00 43.89 3.93
6023 7593 2.990740 ATGAACCAAACAGGGCCTAA 57.009 45.000 5.28 0.00 43.89 2.69
6024 7594 2.286365 TGAACCAAACAGGGCCTAAG 57.714 50.000 5.28 0.00 43.89 2.18
6065 7635 3.904339 AGGACATAGACCAACTTGTCTGT 59.096 43.478 4.03 0.00 45.03 3.41
6072 7642 0.954452 CCAACTTGTCTGTTGCCTCC 59.046 55.000 0.00 0.00 44.12 4.30
6142 7742 1.282157 AGCCCTGTTGGTTCTGTATCC 59.718 52.381 0.00 0.00 36.04 2.59
6158 7759 9.482627 GTTCTGTATCCATCTAAACCTATGAAG 57.517 37.037 0.00 0.00 0.00 3.02
6188 7789 3.594603 CATCTACGGGATGGTATGGAC 57.405 52.381 11.27 0.00 45.85 4.02
6217 7818 1.164041 GGTTCCGTTGTCACCCACAG 61.164 60.000 0.00 0.00 35.97 3.66
6331 7932 9.787532 TTTGTTTGAATCATAAGCATTACTAGC 57.212 29.630 0.00 0.00 30.46 3.42
6332 7933 8.504812 TGTTTGAATCATAAGCATTACTAGCA 57.495 30.769 0.00 0.00 30.46 3.49
6333 7934 8.397906 TGTTTGAATCATAAGCATTACTAGCAC 58.602 33.333 0.00 0.00 30.46 4.40
6378 7979 0.257328 TTGCTGTCCTGGTTGGTGAA 59.743 50.000 0.00 0.00 37.07 3.18
6380 7981 1.133513 TGCTGTCCTGGTTGGTGAATT 60.134 47.619 0.00 0.00 37.07 2.17
6381 7982 2.107378 TGCTGTCCTGGTTGGTGAATTA 59.893 45.455 0.00 0.00 37.07 1.40
6382 7983 2.488153 GCTGTCCTGGTTGGTGAATTAC 59.512 50.000 0.00 0.00 37.07 1.89
6383 7984 3.750371 CTGTCCTGGTTGGTGAATTACA 58.250 45.455 0.00 0.00 37.07 2.41
6384 7985 4.141287 CTGTCCTGGTTGGTGAATTACAA 58.859 43.478 0.00 0.00 37.07 2.41
6474 8093 4.968197 GCCGGAATAGTAGGCGAG 57.032 61.111 5.05 0.00 41.53 5.03
6480 8099 2.812591 CGGAATAGTAGGCGAGCTAAGA 59.187 50.000 0.00 0.00 0.00 2.10
6486 8105 1.119684 TAGGCGAGCTAAGATTGGCA 58.880 50.000 3.68 0.00 37.10 4.92
6489 8108 1.265365 GGCGAGCTAAGATTGGCAATC 59.735 52.381 28.54 28.54 37.10 2.67
6501 8120 2.554272 GCAATCGTCGCCGTTTGT 59.446 55.556 10.82 0.00 42.78 2.83
6502 8121 1.509162 GCAATCGTCGCCGTTTGTC 60.509 57.895 10.82 1.10 42.78 3.18
6504 8123 1.342555 CAATCGTCGCCGTTTGTCTA 58.657 50.000 1.73 0.00 38.40 2.59
6506 8125 1.343506 ATCGTCGCCGTTTGTCTAAC 58.656 50.000 0.00 0.00 35.01 2.34
6507 8126 0.311790 TCGTCGCCGTTTGTCTAACT 59.688 50.000 0.00 0.00 34.46 2.24
6509 8128 2.031245 TCGTCGCCGTTTGTCTAACTTA 60.031 45.455 0.00 0.00 34.46 2.24
6510 8129 2.919229 CGTCGCCGTTTGTCTAACTTAT 59.081 45.455 0.00 0.00 34.46 1.73
6514 8134 2.745281 GCCGTTTGTCTAACTTATGGCA 59.255 45.455 8.25 0.00 38.59 4.92
6530 8150 0.461961 GGCAACTCTATCAGAGCCGT 59.538 55.000 3.09 0.00 46.12 5.68
6538 8158 5.073428 ACTCTATCAGAGCCGTCATATTGA 58.927 41.667 3.09 0.00 46.12 2.57
6539 8159 5.714333 ACTCTATCAGAGCCGTCATATTGAT 59.286 40.000 3.09 0.00 46.12 2.57
6540 8160 6.127758 ACTCTATCAGAGCCGTCATATTGATC 60.128 42.308 3.09 0.00 46.12 2.92
6541 8161 5.948758 TCTATCAGAGCCGTCATATTGATCT 59.051 40.000 0.00 0.00 0.00 2.75
6542 8162 7.112779 TCTATCAGAGCCGTCATATTGATCTA 58.887 38.462 0.00 0.00 0.00 1.98
6543 8163 6.596309 ATCAGAGCCGTCATATTGATCTAA 57.404 37.500 0.00 0.00 0.00 2.10
6544 8164 6.596309 TCAGAGCCGTCATATTGATCTAAT 57.404 37.500 0.00 0.00 0.00 1.73
6545 8165 6.625362 TCAGAGCCGTCATATTGATCTAATC 58.375 40.000 0.00 0.00 0.00 1.75
6546 8166 5.809562 CAGAGCCGTCATATTGATCTAATCC 59.190 44.000 0.00 0.00 0.00 3.01
6547 8167 5.091261 AGCCGTCATATTGATCTAATCCC 57.909 43.478 0.00 0.00 0.00 3.85
6548 8168 4.080863 AGCCGTCATATTGATCTAATCCCC 60.081 45.833 0.00 0.00 0.00 4.81
6549 8169 4.323485 GCCGTCATATTGATCTAATCCCCA 60.323 45.833 0.00 0.00 0.00 4.96
6550 8170 5.630069 GCCGTCATATTGATCTAATCCCCAT 60.630 44.000 0.00 0.00 0.00 4.00
6551 8171 6.408092 GCCGTCATATTGATCTAATCCCCATA 60.408 42.308 0.00 0.00 0.00 2.74
6552 8172 7.564793 CCGTCATATTGATCTAATCCCCATAA 58.435 38.462 0.00 0.00 0.00 1.90
6553 8173 8.213679 CCGTCATATTGATCTAATCCCCATAAT 58.786 37.037 0.00 0.00 0.00 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.423154 CGCAGGCGTTTGAGGGTC 61.423 66.667 5.34 0.00 34.35 4.46
110 111 9.499479 GCATGCTTAGTATGGATATAGCATATT 57.501 33.333 11.37 0.00 39.36 1.28
114 115 6.298441 TGCATGCTTAGTATGGATATAGCA 57.702 37.500 20.33 0.00 35.47 3.49
115 116 6.595326 TGTTGCATGCTTAGTATGGATATAGC 59.405 38.462 20.33 0.00 0.00 2.97
175 176 5.581126 TGTGCATTTCTATGTCCAATTCC 57.419 39.130 0.00 0.00 34.12 3.01
280 294 8.343366 GTCTCCGTCTTTAATTTCAAGTTCTTT 58.657 33.333 0.00 0.00 0.00 2.52
314 328 0.821711 CCGGCAAGGAAGTGGTGAAA 60.822 55.000 0.00 0.00 45.00 2.69
369 385 4.680237 CTCAACCAGCCGCGGACA 62.680 66.667 33.48 1.82 0.00 4.02
436 452 1.006571 TGACTCCAACGACGGCTTC 60.007 57.895 0.00 0.00 0.00 3.86
437 453 1.006102 CTGACTCCAACGACGGCTT 60.006 57.895 0.00 0.00 0.00 4.35
438 454 1.867919 CTCTGACTCCAACGACGGCT 61.868 60.000 0.00 0.00 0.00 5.52
439 455 1.444553 CTCTGACTCCAACGACGGC 60.445 63.158 0.00 0.00 0.00 5.68
447 463 0.034960 CCTCTCCGACTCTGACTCCA 60.035 60.000 0.00 0.00 0.00 3.86
454 476 2.930950 CTCATCTTCCTCTCCGACTCT 58.069 52.381 0.00 0.00 0.00 3.24
509 531 2.626780 GGGTCGCCAAGTTGAAGCC 61.627 63.158 3.87 5.00 0.00 4.35
618 642 1.079819 CATGACGGCAGAGACGGTT 60.080 57.895 0.00 0.00 39.02 4.44
656 684 2.125912 ATGCACGACTCCTCGCAC 60.126 61.111 0.00 0.00 44.33 5.34
699 727 3.500680 GGACGCTGACAGGTCAAAATAAA 59.499 43.478 19.39 0.00 39.39 1.40
702 1364 1.523758 GGACGCTGACAGGTCAAAAT 58.476 50.000 19.39 0.00 39.39 1.82
707 1370 3.371063 TCCGGACGCTGACAGGTC 61.371 66.667 0.00 9.65 0.00 3.85
719 1382 2.044650 CTGGGTAGGACGTCCGGA 60.045 66.667 28.26 17.95 42.08 5.14
727 1390 1.891150 GTCTGAAACGTCTGGGTAGGA 59.109 52.381 0.00 0.00 0.00 2.94
772 1435 7.810766 TTGCCTTTTATTGAAATTAAGAGCG 57.189 32.000 0.00 0.00 0.00 5.03
817 1480 8.241497 ACATTAATACTCCATGCATGTTTCAT 57.759 30.769 24.58 10.07 0.00 2.57
818 1481 7.643569 ACATTAATACTCCATGCATGTTTCA 57.356 32.000 24.58 8.19 0.00 2.69
842 1505 7.554118 GTCTTTTGGATGATCAGAGTGGAAATA 59.446 37.037 0.09 0.00 0.00 1.40
866 1529 6.127980 GCCTATCTTTTCCAGTAGTTTTGGTC 60.128 42.308 0.00 0.00 37.02 4.02
867 1530 5.710567 GCCTATCTTTTCCAGTAGTTTTGGT 59.289 40.000 0.00 0.00 37.02 3.67
868 1531 5.946377 AGCCTATCTTTTCCAGTAGTTTTGG 59.054 40.000 0.00 0.00 37.04 3.28
869 1532 6.655003 TCAGCCTATCTTTTCCAGTAGTTTTG 59.345 38.462 0.00 0.00 0.00 2.44
870 1533 6.779860 TCAGCCTATCTTTTCCAGTAGTTTT 58.220 36.000 0.00 0.00 0.00 2.43
871 1534 6.213600 TCTCAGCCTATCTTTTCCAGTAGTTT 59.786 38.462 0.00 0.00 0.00 2.66
872 1535 5.721960 TCTCAGCCTATCTTTTCCAGTAGTT 59.278 40.000 0.00 0.00 0.00 2.24
873 1536 5.128008 GTCTCAGCCTATCTTTTCCAGTAGT 59.872 44.000 0.00 0.00 0.00 2.73
876 1539 3.840666 TGTCTCAGCCTATCTTTTCCAGT 59.159 43.478 0.00 0.00 0.00 4.00
986 1663 0.600057 GGAGAGTGCCTGGCTTTTTG 59.400 55.000 21.03 0.00 0.00 2.44
1386 2064 4.276431 ACCGATTTCTTTTTGCCGTAAAGA 59.724 37.500 0.00 0.00 39.24 2.52
1387 2065 4.542735 ACCGATTTCTTTTTGCCGTAAAG 58.457 39.130 0.00 0.00 34.63 1.85
1388 2066 4.276431 AGACCGATTTCTTTTTGCCGTAAA 59.724 37.500 0.00 0.00 0.00 2.01
1389 2067 3.816523 AGACCGATTTCTTTTTGCCGTAA 59.183 39.130 0.00 0.00 0.00 3.18
1390 2068 3.404899 AGACCGATTTCTTTTTGCCGTA 58.595 40.909 0.00 0.00 0.00 4.02
1391 2069 2.227194 AGACCGATTTCTTTTTGCCGT 58.773 42.857 0.00 0.00 0.00 5.68
1425 2120 3.142579 AGGAGGAGAACTGAATCCCAT 57.857 47.619 0.00 0.00 36.14 4.00
1436 2131 2.433444 TTTGGGGAGAAGGAGGAGAA 57.567 50.000 0.00 0.00 0.00 2.87
1437 2132 2.433444 TTTTGGGGAGAAGGAGGAGA 57.567 50.000 0.00 0.00 0.00 3.71
1522 2220 8.365399 TCAATAAAGCATCTACTAATTGGTCG 57.635 34.615 0.00 0.00 0.00 4.79
1536 2234 4.652421 AGGTGGCATTCATCAATAAAGCAT 59.348 37.500 0.00 0.00 0.00 3.79
1548 2246 1.410507 CCATGGATCAGGTGGCATTCA 60.411 52.381 5.56 0.00 0.00 2.57
1617 2342 7.661847 AGAAACGGAACAAAAAGACTCTCATAT 59.338 33.333 0.00 0.00 0.00 1.78
1637 2362 1.946768 TGTTTTCCTGCTGGAGAAACG 59.053 47.619 26.12 0.00 44.24 3.60
1646 2371 2.052782 AAGGTCGTTGTTTTCCTGCT 57.947 45.000 0.00 0.00 0.00 4.24
1680 2405 0.665298 TGGTCGAGATCGCTGATCAG 59.335 55.000 18.84 18.84 41.12 2.90
1687 2412 0.173708 AAGGTTCTGGTCGAGATCGC 59.826 55.000 0.00 0.00 39.60 4.58
1697 2422 2.639839 TGAGAGGGAAAGAAGGTTCTGG 59.360 50.000 0.00 0.00 37.65 3.86
1707 2435 5.241506 TGCAGTAACAAATTGAGAGGGAAAG 59.758 40.000 0.00 0.00 0.00 2.62
1712 2440 5.695851 AACTGCAGTAACAAATTGAGAGG 57.304 39.130 22.01 0.00 0.00 3.69
1722 2450 6.335471 TGCTAGTAGTTAACTGCAGTAACA 57.665 37.500 22.01 5.65 39.39 2.41
1740 2468 4.098055 TCTCTACGCAAAAGACTGCTAG 57.902 45.455 0.00 0.00 40.33 3.42
1741 2469 4.673441 GATCTCTACGCAAAAGACTGCTA 58.327 43.478 0.00 0.00 40.33 3.49
1742 2470 3.516615 GATCTCTACGCAAAAGACTGCT 58.483 45.455 0.00 0.00 40.33 4.24
1743 2471 2.280183 CGATCTCTACGCAAAAGACTGC 59.720 50.000 0.00 0.00 39.04 4.40
1744 2472 3.301906 CACGATCTCTACGCAAAAGACTG 59.698 47.826 0.00 0.00 0.00 3.51
1745 2473 3.057456 ACACGATCTCTACGCAAAAGACT 60.057 43.478 0.00 0.00 0.00 3.24
1747 2475 3.570926 ACACGATCTCTACGCAAAAGA 57.429 42.857 0.00 0.00 0.00 2.52
1748 2476 4.263209 CAGTACACGATCTCTACGCAAAAG 59.737 45.833 0.00 0.00 0.00 2.27
1754 2482 2.608090 TCAGCAGTACACGATCTCTACG 59.392 50.000 0.00 0.00 0.00 3.51
1958 2686 3.340928 TGGCAGTTCATCACTTCATCTG 58.659 45.455 0.00 0.00 30.92 2.90
1999 2730 9.556772 AGTACTAGCCTGGCCTTTAATATATAA 57.443 33.333 16.57 0.00 0.00 0.98
2004 2735 7.679732 TTTAGTACTAGCCTGGCCTTTAATA 57.320 36.000 16.57 4.68 0.00 0.98
2051 2782 8.195436 GCAGTCAACACAGGAGTACTTATAATA 58.805 37.037 0.00 0.00 0.00 0.98
2052 2783 7.042335 GCAGTCAACACAGGAGTACTTATAAT 58.958 38.462 0.00 0.00 0.00 1.28
2053 2784 6.014925 TGCAGTCAACACAGGAGTACTTATAA 60.015 38.462 0.00 0.00 0.00 0.98
2054 2785 5.479027 TGCAGTCAACACAGGAGTACTTATA 59.521 40.000 0.00 0.00 0.00 0.98
2055 2786 4.283467 TGCAGTCAACACAGGAGTACTTAT 59.717 41.667 0.00 0.00 0.00 1.73
2056 2787 3.639561 TGCAGTCAACACAGGAGTACTTA 59.360 43.478 0.00 0.00 0.00 2.24
2057 2788 2.434336 TGCAGTCAACACAGGAGTACTT 59.566 45.455 0.00 0.00 0.00 2.24
2058 2789 2.039418 TGCAGTCAACACAGGAGTACT 58.961 47.619 0.00 0.00 0.00 2.73
2091 2844 2.816777 AGGATCTTCTGCCCCTTTTC 57.183 50.000 0.00 0.00 0.00 2.29
2099 2852 7.914346 CACAGAATGATTAAAAGGATCTTCTGC 59.086 37.037 11.69 0.00 39.33 4.26
2100 2853 9.170734 TCACAGAATGATTAAAAGGATCTTCTG 57.829 33.333 10.68 10.68 39.69 3.02
2101 2854 9.745018 TTCACAGAATGATTAAAAGGATCTTCT 57.255 29.630 0.00 0.00 39.69 2.85
2271 3025 9.406828 GAAATTTACAGCTACCCTAAAAACTTG 57.593 33.333 0.00 0.00 0.00 3.16
2301 3058 7.784037 TGACAGGTTGTACTACTAGAAAACAA 58.216 34.615 7.38 0.00 0.00 2.83
2331 3088 2.456577 AGCAGTGTTTTTGTCCCAACT 58.543 42.857 0.00 0.00 0.00 3.16
2415 3172 1.004277 TGGGTGGAGATAAAGGCACAC 59.996 52.381 0.00 0.00 0.00 3.82
2502 3259 2.651455 CAGATGGCATGATCCAGTTGT 58.349 47.619 3.81 0.00 39.89 3.32
2603 3363 0.686789 GCCCAATCACCAGGCTTTTT 59.313 50.000 0.00 0.00 43.62 1.94
2604 3364 1.194121 GGCCCAATCACCAGGCTTTT 61.194 55.000 0.00 0.00 46.31 2.27
2691 3584 3.464833 AGACAAGGGCATGGAAGGATTAT 59.535 43.478 0.00 0.00 0.00 1.28
2693 3586 1.642762 AGACAAGGGCATGGAAGGATT 59.357 47.619 0.00 0.00 0.00 3.01
2694 3587 1.302907 AGACAAGGGCATGGAAGGAT 58.697 50.000 0.00 0.00 0.00 3.24
2695 3588 1.075601 AAGACAAGGGCATGGAAGGA 58.924 50.000 0.00 0.00 0.00 3.36
2696 3589 1.821136 GAAAGACAAGGGCATGGAAGG 59.179 52.381 0.00 0.00 0.00 3.46
2775 3668 4.494350 AGTGCACACTGAATTCATTCAC 57.506 40.909 21.04 11.79 41.51 3.18
2857 3750 3.384146 TCATCTGCTTTGCCTCAACAAAA 59.616 39.130 0.00 0.00 38.96 2.44
2861 3754 2.430465 TCTCATCTGCTTTGCCTCAAC 58.570 47.619 0.00 0.00 0.00 3.18
2862 3755 2.865119 TCTCATCTGCTTTGCCTCAA 57.135 45.000 0.00 0.00 0.00 3.02
2863 3756 2.865119 TTCTCATCTGCTTTGCCTCA 57.135 45.000 0.00 0.00 0.00 3.86
2864 3757 4.715527 AAATTCTCATCTGCTTTGCCTC 57.284 40.909 0.00 0.00 0.00 4.70
2865 3758 5.221581 ACAAAAATTCTCATCTGCTTTGCCT 60.222 36.000 0.00 0.00 0.00 4.75
2866 3759 4.992951 ACAAAAATTCTCATCTGCTTTGCC 59.007 37.500 0.00 0.00 0.00 4.52
2867 3760 6.018507 ACAACAAAAATTCTCATCTGCTTTGC 60.019 34.615 0.00 0.00 0.00 3.68
2868 3761 7.473027 ACAACAAAAATTCTCATCTGCTTTG 57.527 32.000 0.00 0.00 0.00 2.77
2869 3762 7.765360 TCAACAACAAAAATTCTCATCTGCTTT 59.235 29.630 0.00 0.00 0.00 3.51
2870 3763 7.267128 TCAACAACAAAAATTCTCATCTGCTT 58.733 30.769 0.00 0.00 0.00 3.91
2871 3764 6.808829 TCAACAACAAAAATTCTCATCTGCT 58.191 32.000 0.00 0.00 0.00 4.24
2872 3765 6.145048 CCTCAACAACAAAAATTCTCATCTGC 59.855 38.462 0.00 0.00 0.00 4.26
2873 3766 7.428020 TCCTCAACAACAAAAATTCTCATCTG 58.572 34.615 0.00 0.00 0.00 2.90
2874 3767 7.587037 TCCTCAACAACAAAAATTCTCATCT 57.413 32.000 0.00 0.00 0.00 2.90
2875 3768 8.647143 TTTCCTCAACAACAAAAATTCTCATC 57.353 30.769 0.00 0.00 0.00 2.92
2876 3769 9.101655 CTTTTCCTCAACAACAAAAATTCTCAT 57.898 29.630 0.00 0.00 0.00 2.90
2877 3770 7.064490 GCTTTTCCTCAACAACAAAAATTCTCA 59.936 33.333 0.00 0.00 0.00 3.27
2878 3771 7.064490 TGCTTTTCCTCAACAACAAAAATTCTC 59.936 33.333 0.00 0.00 0.00 2.87
2879 3772 6.878389 TGCTTTTCCTCAACAACAAAAATTCT 59.122 30.769 0.00 0.00 0.00 2.40
2880 3773 7.064490 TCTGCTTTTCCTCAACAACAAAAATTC 59.936 33.333 0.00 0.00 0.00 2.17
2881 3774 6.878389 TCTGCTTTTCCTCAACAACAAAAATT 59.122 30.769 0.00 0.00 0.00 1.82
2882 3775 6.405538 TCTGCTTTTCCTCAACAACAAAAAT 58.594 32.000 0.00 0.00 0.00 1.82
2883 3776 5.788450 TCTGCTTTTCCTCAACAACAAAAA 58.212 33.333 0.00 0.00 0.00 1.94
2884 3777 5.398603 TCTGCTTTTCCTCAACAACAAAA 57.601 34.783 0.00 0.00 0.00 2.44
2885 3778 5.126869 TCATCTGCTTTTCCTCAACAACAAA 59.873 36.000 0.00 0.00 0.00 2.83
2886 3779 4.644234 TCATCTGCTTTTCCTCAACAACAA 59.356 37.500 0.00 0.00 0.00 2.83
2887 3780 4.206375 TCATCTGCTTTTCCTCAACAACA 58.794 39.130 0.00 0.00 0.00 3.33
2888 3781 4.516698 TCTCATCTGCTTTTCCTCAACAAC 59.483 41.667 0.00 0.00 0.00 3.32
2889 3782 4.717877 TCTCATCTGCTTTTCCTCAACAA 58.282 39.130 0.00 0.00 0.00 2.83
2890 3783 4.356405 TCTCATCTGCTTTTCCTCAACA 57.644 40.909 0.00 0.00 0.00 3.33
2891 3784 5.447010 CGATTCTCATCTGCTTTTCCTCAAC 60.447 44.000 0.00 0.00 0.00 3.18
2892 3785 4.633126 CGATTCTCATCTGCTTTTCCTCAA 59.367 41.667 0.00 0.00 0.00 3.02
2923 3816 1.268896 GCCGAATCATTCTGTGGCATG 60.269 52.381 9.30 0.00 42.03 4.06
2932 3825 6.803807 GCCTTAAAGATATTGCCGAATCATTC 59.196 38.462 0.00 0.00 0.00 2.67
2943 3839 7.707893 CCAACCAGATTTGCCTTAAAGATATTG 59.292 37.037 0.00 0.00 0.00 1.90
3040 3939 1.146041 TCACACTCACACCAGCACC 59.854 57.895 0.00 0.00 0.00 5.01
3041 3940 1.160329 GGTCACACTCACACCAGCAC 61.160 60.000 0.00 0.00 0.00 4.40
3126 4026 4.507710 CCGAAGACCATCAAATCAAGAGA 58.492 43.478 0.00 0.00 0.00 3.10
3254 4158 0.538057 TTCAAAGCTCAGTGGGGCAG 60.538 55.000 10.62 0.00 0.00 4.85
3320 4224 0.250513 GGCCTGCAAGCTACAGTACT 59.749 55.000 7.34 0.00 33.09 2.73
3321 4225 0.250513 AGGCCTGCAAGCTACAGTAC 59.749 55.000 3.11 7.51 33.09 2.73
3322 4226 1.860641 TAGGCCTGCAAGCTACAGTA 58.139 50.000 17.99 0.00 33.09 2.74
3323 4227 1.134280 CATAGGCCTGCAAGCTACAGT 60.134 52.381 17.99 1.07 33.09 3.55
3324 4228 1.590932 CATAGGCCTGCAAGCTACAG 58.409 55.000 17.99 9.25 34.82 2.74
3361 4265 1.547675 GGTCAAAGTGAAGATGGGGCA 60.548 52.381 0.00 0.00 0.00 5.36
3474 4382 8.046708 TGACAGAAGCCAATACTGTAATTACAT 58.953 33.333 18.35 11.19 43.49 2.29
3475 4383 7.390823 TGACAGAAGCCAATACTGTAATTACA 58.609 34.615 17.16 17.16 43.49 2.41
3476 4384 7.843490 TGACAGAAGCCAATACTGTAATTAC 57.157 36.000 8.75 8.75 43.49 1.89
3483 4391 5.178061 TGTGTATGACAGAAGCCAATACTG 58.822 41.667 0.00 0.00 37.62 2.74
3598 4512 0.905337 ATCCGGGGCATAGGTCTAGC 60.905 60.000 0.00 0.00 0.00 3.42
3634 4570 2.097825 GATTCTTGCACTGCCAAGGAT 58.902 47.619 0.00 3.02 42.37 3.24
3636 4572 1.250328 TGATTCTTGCACTGCCAAGG 58.750 50.000 0.00 0.00 41.89 3.61
3689 4627 0.923358 TTGGGGAACAGTGTCTGGTT 59.077 50.000 0.00 0.00 35.51 3.67
3694 4632 3.153919 TGCTTAATTGGGGAACAGTGTC 58.846 45.455 0.00 0.00 0.00 3.67
3704 4650 3.055891 CCAAAGGAGGTTGCTTAATTGGG 60.056 47.826 0.00 0.00 0.00 4.12
3713 4659 1.531602 AGTGCCCAAAGGAGGTTGC 60.532 57.895 0.00 0.00 33.47 4.17
3745 4691 5.582550 TGACTCATATCAATCAGTGTCGTC 58.417 41.667 0.00 0.00 0.00 4.20
3816 4783 6.321945 CACCATCACCAATCAAATTCCATCTA 59.678 38.462 0.00 0.00 0.00 1.98
3818 4785 5.353938 CACCATCACCAATCAAATTCCATC 58.646 41.667 0.00 0.00 0.00 3.51
3821 4788 3.196254 AGCACCATCACCAATCAAATTCC 59.804 43.478 0.00 0.00 0.00 3.01
3822 4789 4.460948 AGCACCATCACCAATCAAATTC 57.539 40.909 0.00 0.00 0.00 2.17
3832 4804 5.648092 AGAAAACACTATTAGCACCATCACC 59.352 40.000 0.00 0.00 0.00 4.02
3835 4807 5.066505 CCCAGAAAACACTATTAGCACCATC 59.933 44.000 0.00 0.00 0.00 3.51
3859 4831 2.807967 GCAAAACTGCATCTTTTTCCCC 59.192 45.455 0.00 0.00 34.41 4.81
3860 4832 3.465871 TGCAAAACTGCATCTTTTTCCC 58.534 40.909 0.00 0.00 40.23 3.97
3861 4833 3.495753 CCTGCAAAACTGCATCTTTTTCC 59.504 43.478 0.00 0.00 44.47 3.13
3862 4834 3.495753 CCCTGCAAAACTGCATCTTTTTC 59.504 43.478 0.00 0.00 44.47 2.29
4207 5316 3.948719 GGGGTCCTGGCGTTGACA 61.949 66.667 0.00 0.00 33.09 3.58
4312 5421 2.119801 AAGCAGTCATGTCCATGTCC 57.880 50.000 7.13 0.52 39.72 4.02
4320 5429 3.214328 AGAAACGGAAAAGCAGTCATGT 58.786 40.909 0.00 0.00 0.00 3.21
4510 5619 2.014857 CTCCTGCACCTTGTGATGATG 58.985 52.381 0.00 0.00 35.23 3.07
4511 5620 1.911357 TCTCCTGCACCTTGTGATGAT 59.089 47.619 0.00 0.00 35.23 2.45
4512 5621 1.351076 TCTCCTGCACCTTGTGATGA 58.649 50.000 0.00 0.00 35.23 2.92
4581 5690 1.344763 AGGAAGTTGTTCTCGTCCTGG 59.655 52.381 0.00 0.00 40.95 4.45
4738 5854 0.098200 CCTGCACATGATCAGCAACG 59.902 55.000 9.16 0.00 37.89 4.10
4744 5860 2.686405 GCAAAGATCCTGCACATGATCA 59.314 45.455 15.40 0.00 39.86 2.92
4761 5877 4.832266 ACTGATACAACCTTCCAATGCAAA 59.168 37.500 0.00 0.00 0.00 3.68
4776 5892 3.764972 TCCGGTTGATGTACACTGATACA 59.235 43.478 0.00 0.00 39.35 2.29
4877 6000 4.034279 CCTGCAAAATTTAATGGCCGAATG 59.966 41.667 0.00 0.00 0.00 2.67
4979 6102 3.748048 GCCATGGCTGTATATGTACTGTG 59.252 47.826 29.98 0.34 38.26 3.66
5090 6213 3.936203 GTCCACCACCACGCCTGA 61.936 66.667 0.00 0.00 0.00 3.86
5314 6437 1.739338 ATCAGATCGCCCTCCGTGAC 61.739 60.000 0.00 0.00 38.35 3.67
5318 6441 1.301244 CCAATCAGATCGCCCTCCG 60.301 63.158 0.00 0.00 38.61 4.63
5320 6443 1.599240 GGCCAATCAGATCGCCCTC 60.599 63.158 0.00 0.00 35.23 4.30
5321 6444 1.639635 AAGGCCAATCAGATCGCCCT 61.640 55.000 5.01 3.05 42.66 5.19
5322 6445 1.152881 AAGGCCAATCAGATCGCCC 60.153 57.895 5.01 2.40 42.66 6.13
5325 6460 3.797039 TCTAACAAGGCCAATCAGATCG 58.203 45.455 5.01 0.00 0.00 3.69
5336 6471 5.831997 ACAAGAACACATTTCTAACAAGGC 58.168 37.500 0.00 0.00 0.00 4.35
5389 6524 7.040617 GGGAAGAAACTAAAAACTTACAGGAGG 60.041 40.741 0.00 0.00 0.00 4.30
5400 6535 5.071384 ACGAGAGAGGGGAAGAAACTAAAAA 59.929 40.000 0.00 0.00 0.00 1.94
5414 6549 3.202906 CTCAAGTCTAGACGAGAGAGGG 58.797 54.545 28.88 12.91 38.48 4.30
5526 6662 9.496710 TTCCCAAGGTTACTTATTACTAGATCA 57.503 33.333 0.00 0.00 34.49 2.92
5527 6663 9.761504 GTTCCCAAGGTTACTTATTACTAGATC 57.238 37.037 0.00 0.00 34.49 2.75
5529 6665 8.669055 TGTTCCCAAGGTTACTTATTACTAGA 57.331 34.615 0.00 0.00 34.49 2.43
5530 6666 7.985752 CCTGTTCCCAAGGTTACTTATTACTAG 59.014 40.741 0.00 0.00 34.49 2.57
5531 6667 7.679453 TCCTGTTCCCAAGGTTACTTATTACTA 59.321 37.037 0.00 0.00 34.49 1.82
5532 6668 6.502863 TCCTGTTCCCAAGGTTACTTATTACT 59.497 38.462 0.00 0.00 34.49 2.24
5533 6669 6.714278 TCCTGTTCCCAAGGTTACTTATTAC 58.286 40.000 0.00 0.00 34.49 1.89
5534 6670 6.956102 TCCTGTTCCCAAGGTTACTTATTA 57.044 37.500 0.00 0.00 34.49 0.98
5535 6671 5.853572 TCCTGTTCCCAAGGTTACTTATT 57.146 39.130 0.00 0.00 34.49 1.40
5536 6672 5.550403 TCTTCCTGTTCCCAAGGTTACTTAT 59.450 40.000 0.00 0.00 34.49 1.73
5577 7112 4.945246 ACCTTTGTAGTACAGTGACACAG 58.055 43.478 8.59 1.82 0.00 3.66
5638 7174 2.877097 TGCCTTCACCTTGCAGATAA 57.123 45.000 0.00 0.00 0.00 1.75
5640 7176 1.999648 TTTGCCTTCACCTTGCAGAT 58.000 45.000 0.00 0.00 36.21 2.90
5698 7268 3.133721 GTGTCCAGGAGCTAGATCACATT 59.866 47.826 10.68 0.00 0.00 2.71
5699 7269 2.697751 GTGTCCAGGAGCTAGATCACAT 59.302 50.000 10.68 0.00 0.00 3.21
5700 7270 2.103373 GTGTCCAGGAGCTAGATCACA 58.897 52.381 10.68 2.48 0.00 3.58
5701 7271 2.360801 GAGTGTCCAGGAGCTAGATCAC 59.639 54.545 10.68 0.00 0.00 3.06
5719 7289 4.344679 CCTCTTAGCATCTTGATCCTGAGT 59.655 45.833 0.00 0.00 0.00 3.41
5722 7292 3.390639 ACCCTCTTAGCATCTTGATCCTG 59.609 47.826 0.00 0.00 0.00 3.86
5724 7294 3.135530 ACACCCTCTTAGCATCTTGATCC 59.864 47.826 0.00 0.00 0.00 3.36
5730 7300 4.373156 AACAAACACCCTCTTAGCATCT 57.627 40.909 0.00 0.00 0.00 2.90
5731 7301 5.009610 TGAAAACAAACACCCTCTTAGCATC 59.990 40.000 0.00 0.00 0.00 3.91
5740 7310 2.024369 AGTCCCTGAAAACAAACACCCT 60.024 45.455 0.00 0.00 0.00 4.34
5741 7311 2.384828 AGTCCCTGAAAACAAACACCC 58.615 47.619 0.00 0.00 0.00 4.61
5742 7312 5.784578 ATAAGTCCCTGAAAACAAACACC 57.215 39.130 0.00 0.00 0.00 4.16
5743 7313 5.983118 CCAATAAGTCCCTGAAAACAAACAC 59.017 40.000 0.00 0.00 0.00 3.32
5744 7314 5.659079 ACCAATAAGTCCCTGAAAACAAACA 59.341 36.000 0.00 0.00 0.00 2.83
5745 7315 6.156748 ACCAATAAGTCCCTGAAAACAAAC 57.843 37.500 0.00 0.00 0.00 2.93
5746 7316 6.800072 AACCAATAAGTCCCTGAAAACAAA 57.200 33.333 0.00 0.00 0.00 2.83
5747 7317 6.800072 AAACCAATAAGTCCCTGAAAACAA 57.200 33.333 0.00 0.00 0.00 2.83
5748 7318 6.492087 CCTAAACCAATAAGTCCCTGAAAACA 59.508 38.462 0.00 0.00 0.00 2.83
5749 7319 6.071560 CCCTAAACCAATAAGTCCCTGAAAAC 60.072 42.308 0.00 0.00 0.00 2.43
5750 7320 6.014012 CCCTAAACCAATAAGTCCCTGAAAA 58.986 40.000 0.00 0.00 0.00 2.29
5751 7321 5.313772 TCCCTAAACCAATAAGTCCCTGAAA 59.686 40.000 0.00 0.00 0.00 2.69
5752 7322 4.853276 TCCCTAAACCAATAAGTCCCTGAA 59.147 41.667 0.00 0.00 0.00 3.02
5753 7323 4.226620 GTCCCTAAACCAATAAGTCCCTGA 59.773 45.833 0.00 0.00 0.00 3.86
5754 7324 4.227527 AGTCCCTAAACCAATAAGTCCCTG 59.772 45.833 0.00 0.00 0.00 4.45
5755 7325 4.445564 AGTCCCTAAACCAATAAGTCCCT 58.554 43.478 0.00 0.00 0.00 4.20
5756 7326 4.857130 AGTCCCTAAACCAATAAGTCCC 57.143 45.455 0.00 0.00 0.00 4.46
5757 7327 8.640063 TTTTAAGTCCCTAAACCAATAAGTCC 57.360 34.615 0.00 0.00 0.00 3.85
5783 7353 9.225682 TGATTTAGATGGAACTTATAGGGACTT 57.774 33.333 0.00 0.00 41.75 3.01
5784 7354 8.798975 TGATTTAGATGGAACTTATAGGGACT 57.201 34.615 0.00 0.00 46.37 3.85
5785 7355 9.847224 TTTGATTTAGATGGAACTTATAGGGAC 57.153 33.333 0.00 0.00 0.00 4.46
5786 7356 9.847224 GTTTGATTTAGATGGAACTTATAGGGA 57.153 33.333 0.00 0.00 0.00 4.20
5787 7357 9.627123 TGTTTGATTTAGATGGAACTTATAGGG 57.373 33.333 0.00 0.00 0.00 3.53
5791 7361 9.401058 CTCCTGTTTGATTTAGATGGAACTTAT 57.599 33.333 0.00 0.00 0.00 1.73
5792 7362 7.829211 CCTCCTGTTTGATTTAGATGGAACTTA 59.171 37.037 0.00 0.00 0.00 2.24
5793 7363 6.660949 CCTCCTGTTTGATTTAGATGGAACTT 59.339 38.462 0.00 0.00 0.00 2.66
5794 7364 6.183347 CCTCCTGTTTGATTTAGATGGAACT 58.817 40.000 0.00 0.00 0.00 3.01
5795 7365 5.358160 CCCTCCTGTTTGATTTAGATGGAAC 59.642 44.000 0.00 0.00 0.00 3.62
5796 7366 5.252863 TCCCTCCTGTTTGATTTAGATGGAA 59.747 40.000 0.00 0.00 0.00 3.53
5797 7367 4.788075 TCCCTCCTGTTTGATTTAGATGGA 59.212 41.667 0.00 0.00 0.00 3.41
5798 7368 4.884164 GTCCCTCCTGTTTGATTTAGATGG 59.116 45.833 0.00 0.00 0.00 3.51
5799 7369 5.749462 AGTCCCTCCTGTTTGATTTAGATG 58.251 41.667 0.00 0.00 0.00 2.90
5800 7370 6.394345 AAGTCCCTCCTGTTTGATTTAGAT 57.606 37.500 0.00 0.00 0.00 1.98
5801 7371 5.843019 AAGTCCCTCCTGTTTGATTTAGA 57.157 39.130 0.00 0.00 0.00 2.10
5802 7372 7.934120 CCTATAAGTCCCTCCTGTTTGATTTAG 59.066 40.741 0.00 0.00 0.00 1.85
5803 7373 7.147373 CCCTATAAGTCCCTCCTGTTTGATTTA 60.147 40.741 0.00 0.00 0.00 1.40
5804 7374 6.353951 CCCTATAAGTCCCTCCTGTTTGATTT 60.354 42.308 0.00 0.00 0.00 2.17
5805 7375 5.132816 CCCTATAAGTCCCTCCTGTTTGATT 59.867 44.000 0.00 0.00 0.00 2.57
5806 7376 4.660771 CCCTATAAGTCCCTCCTGTTTGAT 59.339 45.833 0.00 0.00 0.00 2.57
5807 7377 4.037927 CCCTATAAGTCCCTCCTGTTTGA 58.962 47.826 0.00 0.00 0.00 2.69
5808 7378 4.037927 TCCCTATAAGTCCCTCCTGTTTG 58.962 47.826 0.00 0.00 0.00 2.93
5809 7379 4.038633 GTCCCTATAAGTCCCTCCTGTTT 58.961 47.826 0.00 0.00 0.00 2.83
5810 7380 3.275228 AGTCCCTATAAGTCCCTCCTGTT 59.725 47.826 0.00 0.00 0.00 3.16
5811 7381 2.866454 AGTCCCTATAAGTCCCTCCTGT 59.134 50.000 0.00 0.00 0.00 4.00
5812 7382 3.621682 AGTCCCTATAAGTCCCTCCTG 57.378 52.381 0.00 0.00 0.00 3.86
5813 7383 5.763239 TTAAGTCCCTATAAGTCCCTCCT 57.237 43.478 0.00 0.00 0.00 3.69
5814 7384 5.904169 ACTTTAAGTCCCTATAAGTCCCTCC 59.096 44.000 0.00 0.00 0.00 4.30
5815 7385 6.183360 CCACTTTAAGTCCCTATAAGTCCCTC 60.183 46.154 0.00 0.00 0.00 4.30
5816 7386 5.666265 CCACTTTAAGTCCCTATAAGTCCCT 59.334 44.000 0.00 0.00 0.00 4.20
5817 7387 5.664457 TCCACTTTAAGTCCCTATAAGTCCC 59.336 44.000 0.00 0.00 0.00 4.46
5818 7388 6.155737 TGTCCACTTTAAGTCCCTATAAGTCC 59.844 42.308 0.00 0.00 0.00 3.85
5819 7389 7.179076 TGTCCACTTTAAGTCCCTATAAGTC 57.821 40.000 0.00 0.00 0.00 3.01
5820 7390 7.750947 ATGTCCACTTTAAGTCCCTATAAGT 57.249 36.000 0.00 0.00 0.00 2.24
5821 7391 8.893727 CAAATGTCCACTTTAAGTCCCTATAAG 58.106 37.037 0.00 0.00 0.00 1.73
5822 7392 7.832187 CCAAATGTCCACTTTAAGTCCCTATAA 59.168 37.037 0.00 0.00 0.00 0.98
5823 7393 7.343357 CCAAATGTCCACTTTAAGTCCCTATA 58.657 38.462 0.00 0.00 0.00 1.31
5824 7394 6.187682 CCAAATGTCCACTTTAAGTCCCTAT 58.812 40.000 0.00 0.00 0.00 2.57
5825 7395 5.515886 CCCAAATGTCCACTTTAAGTCCCTA 60.516 44.000 0.00 0.00 0.00 3.53
5826 7396 4.407365 CCAAATGTCCACTTTAAGTCCCT 58.593 43.478 0.00 0.00 0.00 4.20
5827 7397 3.509967 CCCAAATGTCCACTTTAAGTCCC 59.490 47.826 0.00 0.00 0.00 4.46
5828 7398 4.403734 TCCCAAATGTCCACTTTAAGTCC 58.596 43.478 0.00 0.00 0.00 3.85
5829 7399 6.590234 AATCCCAAATGTCCACTTTAAGTC 57.410 37.500 0.00 0.00 0.00 3.01
5830 7400 6.994421 AAATCCCAAATGTCCACTTTAAGT 57.006 33.333 0.00 0.00 0.00 2.24
5831 7401 8.748412 TCATAAATCCCAAATGTCCACTTTAAG 58.252 33.333 0.00 0.00 0.00 1.85
5832 7402 8.657387 TCATAAATCCCAAATGTCCACTTTAA 57.343 30.769 0.00 0.00 0.00 1.52
5833 7403 8.657387 TTCATAAATCCCAAATGTCCACTTTA 57.343 30.769 0.00 0.00 0.00 1.85
5834 7404 7.552050 TTCATAAATCCCAAATGTCCACTTT 57.448 32.000 0.00 0.00 0.00 2.66
5835 7405 7.552050 TTTCATAAATCCCAAATGTCCACTT 57.448 32.000 0.00 0.00 0.00 3.16
5836 7406 7.738437 ATTTCATAAATCCCAAATGTCCACT 57.262 32.000 0.00 0.00 0.00 4.00
5837 7407 9.883142 TTTATTTCATAAATCCCAAATGTCCAC 57.117 29.630 0.00 0.00 30.25 4.02
5845 7415 9.973661 TGAGAGTCTTTATTTCATAAATCCCAA 57.026 29.630 0.00 0.00 34.50 4.12
5846 7416 9.973661 TTGAGAGTCTTTATTTCATAAATCCCA 57.026 29.630 0.00 0.00 34.50 4.37
5851 7421 9.672673 CCTCCTTGAGAGTCTTTATTTCATAAA 57.327 33.333 0.00 0.00 41.47 1.40
5852 7422 8.267894 CCCTCCTTGAGAGTCTTTATTTCATAA 58.732 37.037 0.00 0.00 41.47 1.90
5853 7423 7.623677 TCCCTCCTTGAGAGTCTTTATTTCATA 59.376 37.037 0.00 0.00 41.47 2.15
5854 7424 6.445139 TCCCTCCTTGAGAGTCTTTATTTCAT 59.555 38.462 0.00 0.00 41.47 2.57
5855 7425 5.785423 TCCCTCCTTGAGAGTCTTTATTTCA 59.215 40.000 0.00 0.00 41.47 2.69
5856 7426 6.070481 AGTCCCTCCTTGAGAGTCTTTATTTC 60.070 42.308 0.00 0.00 41.47 2.17
5857 7427 5.788014 AGTCCCTCCTTGAGAGTCTTTATTT 59.212 40.000 0.00 0.00 41.47 1.40
5858 7428 5.346270 AGTCCCTCCTTGAGAGTCTTTATT 58.654 41.667 0.00 0.00 41.47 1.40
5859 7429 4.954089 AGTCCCTCCTTGAGAGTCTTTAT 58.046 43.478 0.00 0.00 41.47 1.40
5860 7430 4.405756 AGTCCCTCCTTGAGAGTCTTTA 57.594 45.455 0.00 0.00 41.47 1.85
5861 7431 3.268034 AGTCCCTCCTTGAGAGTCTTT 57.732 47.619 0.00 0.00 41.47 2.52
5862 7432 3.268034 AAGTCCCTCCTTGAGAGTCTT 57.732 47.619 0.00 0.00 41.47 3.01
5863 7433 4.618378 ATAAGTCCCTCCTTGAGAGTCT 57.382 45.455 0.00 0.00 41.47 3.24
5864 7434 4.830600 CCTATAAGTCCCTCCTTGAGAGTC 59.169 50.000 0.00 0.00 41.47 3.36
5865 7435 4.482772 TCCTATAAGTCCCTCCTTGAGAGT 59.517 45.833 0.00 0.00 41.47 3.24
5866 7436 5.068215 TCCTATAAGTCCCTCCTTGAGAG 57.932 47.826 0.00 0.00 42.83 3.20
5867 7437 5.043281 AGTTCCTATAAGTCCCTCCTTGAGA 60.043 44.000 0.00 0.00 0.00 3.27
5868 7438 5.212745 AGTTCCTATAAGTCCCTCCTTGAG 58.787 45.833 0.00 0.00 0.00 3.02
5869 7439 5.222278 AGTTCCTATAAGTCCCTCCTTGA 57.778 43.478 0.00 0.00 0.00 3.02
5870 7440 5.959583 AAGTTCCTATAAGTCCCTCCTTG 57.040 43.478 0.00 0.00 0.00 3.61
5871 7441 8.521301 ACTATAAGTTCCTATAAGTCCCTCCTT 58.479 37.037 0.00 0.00 0.00 3.36
5872 7442 8.071235 ACTATAAGTTCCTATAAGTCCCTCCT 57.929 38.462 0.00 0.00 0.00 3.69
5873 7443 8.586744 CAACTATAAGTTCCTATAAGTCCCTCC 58.413 40.741 0.00 0.00 36.03 4.30
5874 7444 9.145442 ACAACTATAAGTTCCTATAAGTCCCTC 57.855 37.037 0.00 0.00 36.03 4.30
5918 7488 5.249852 TGTTTGGCTAGTGGGACTTATAAGT 59.750 40.000 18.05 18.05 43.16 2.24
5919 7489 5.741011 TGTTTGGCTAGTGGGACTTATAAG 58.259 41.667 11.05 11.05 0.00 1.73
5920 7490 5.338871 CCTGTTTGGCTAGTGGGACTTATAA 60.339 44.000 0.00 0.00 0.00 0.98
5921 7491 4.163458 CCTGTTTGGCTAGTGGGACTTATA 59.837 45.833 0.00 0.00 0.00 0.98
5922 7492 3.054361 CCTGTTTGGCTAGTGGGACTTAT 60.054 47.826 0.00 0.00 0.00 1.73
5923 7493 2.304761 CCTGTTTGGCTAGTGGGACTTA 59.695 50.000 0.00 0.00 0.00 2.24
5924 7494 1.073923 CCTGTTTGGCTAGTGGGACTT 59.926 52.381 0.00 0.00 0.00 3.01
5925 7495 0.693049 CCTGTTTGGCTAGTGGGACT 59.307 55.000 0.00 0.00 0.00 3.85
5926 7496 0.400594 ACCTGTTTGGCTAGTGGGAC 59.599 55.000 0.00 0.00 40.22 4.46
5927 7497 1.906574 CTACCTGTTTGGCTAGTGGGA 59.093 52.381 0.00 0.00 40.22 4.37
5928 7498 1.906574 TCTACCTGTTTGGCTAGTGGG 59.093 52.381 0.00 0.00 40.22 4.61
5929 7499 2.832129 TCTCTACCTGTTTGGCTAGTGG 59.168 50.000 0.00 0.00 40.22 4.00
5930 7500 3.511934 AGTCTCTACCTGTTTGGCTAGTG 59.488 47.826 0.00 0.00 40.22 2.74
5931 7501 3.780626 AGTCTCTACCTGTTTGGCTAGT 58.219 45.455 0.00 0.00 40.22 2.57
5932 7502 4.810191 AAGTCTCTACCTGTTTGGCTAG 57.190 45.455 0.00 0.00 40.22 3.42
5933 7503 5.562298 AAAAGTCTCTACCTGTTTGGCTA 57.438 39.130 0.00 0.00 40.22 3.93
5934 7504 4.439253 AAAAGTCTCTACCTGTTTGGCT 57.561 40.909 0.00 0.00 40.22 4.75
5935 7505 5.181433 CCTAAAAAGTCTCTACCTGTTTGGC 59.819 44.000 0.00 0.00 40.22 4.52
5936 7506 5.705905 CCCTAAAAAGTCTCTACCTGTTTGG 59.294 44.000 0.00 0.00 42.93 3.28
5937 7507 6.427242 GTCCCTAAAAAGTCTCTACCTGTTTG 59.573 42.308 0.00 0.00 0.00 2.93
5938 7508 6.329460 AGTCCCTAAAAAGTCTCTACCTGTTT 59.671 38.462 0.00 0.00 0.00 2.83
5939 7509 5.845065 AGTCCCTAAAAAGTCTCTACCTGTT 59.155 40.000 0.00 0.00 0.00 3.16
5940 7510 5.404395 AGTCCCTAAAAAGTCTCTACCTGT 58.596 41.667 0.00 0.00 0.00 4.00
5941 7511 6.361768 AAGTCCCTAAAAAGTCTCTACCTG 57.638 41.667 0.00 0.00 0.00 4.00
5942 7512 7.954620 TCTTAAGTCCCTAAAAAGTCTCTACCT 59.045 37.037 1.63 0.00 0.00 3.08
5943 7513 8.034215 GTCTTAAGTCCCTAAAAAGTCTCTACC 58.966 40.741 1.63 0.00 0.00 3.18
5944 7514 8.805175 AGTCTTAAGTCCCTAAAAAGTCTCTAC 58.195 37.037 1.63 0.00 0.00 2.59
5945 7515 8.953223 AGTCTTAAGTCCCTAAAAAGTCTCTA 57.047 34.615 1.63 0.00 0.00 2.43
5946 7516 7.859026 AGTCTTAAGTCCCTAAAAAGTCTCT 57.141 36.000 1.63 0.00 0.00 3.10
5956 7526 9.986157 TCTCAACTTATAAGTCTTAAGTCCCTA 57.014 33.333 18.28 0.00 38.59 3.53
5957 7527 8.751242 GTCTCAACTTATAAGTCTTAAGTCCCT 58.249 37.037 18.28 0.00 38.59 4.20
5958 7528 8.751242 AGTCTCAACTTATAAGTCTTAAGTCCC 58.249 37.037 18.28 6.90 38.59 4.46
5992 7562 5.801380 TGTTTGGTTCATAAGTCCTAGGAC 58.199 41.667 31.29 31.29 44.86 3.85
5993 7563 5.045869 CCTGTTTGGTTCATAAGTCCTAGGA 60.046 44.000 7.62 7.62 0.00 2.94
5994 7564 5.186198 CCTGTTTGGTTCATAAGTCCTAGG 58.814 45.833 0.82 0.82 0.00 3.02
5995 7565 5.186198 CCCTGTTTGGTTCATAAGTCCTAG 58.814 45.833 0.00 0.00 0.00 3.02
5996 7566 4.566907 GCCCTGTTTGGTTCATAAGTCCTA 60.567 45.833 0.00 0.00 0.00 2.94
5997 7567 3.814316 GCCCTGTTTGGTTCATAAGTCCT 60.814 47.826 0.00 0.00 0.00 3.85
5998 7568 2.492088 GCCCTGTTTGGTTCATAAGTCC 59.508 50.000 0.00 0.00 0.00 3.85
5999 7569 2.492088 GGCCCTGTTTGGTTCATAAGTC 59.508 50.000 0.00 0.00 0.00 3.01
6000 7570 2.110011 AGGCCCTGTTTGGTTCATAAGT 59.890 45.455 0.00 0.00 0.00 2.24
6001 7571 2.807676 AGGCCCTGTTTGGTTCATAAG 58.192 47.619 0.00 0.00 0.00 1.73
6002 7572 2.990740 AGGCCCTGTTTGGTTCATAA 57.009 45.000 0.00 0.00 0.00 1.90
6003 7573 3.332485 ACTTAGGCCCTGTTTGGTTCATA 59.668 43.478 0.00 0.00 0.00 2.15
6004 7574 2.110011 ACTTAGGCCCTGTTTGGTTCAT 59.890 45.455 0.00 0.00 0.00 2.57
6005 7575 1.497286 ACTTAGGCCCTGTTTGGTTCA 59.503 47.619 0.00 0.00 0.00 3.18
6006 7576 2.287977 ACTTAGGCCCTGTTTGGTTC 57.712 50.000 0.00 0.00 0.00 3.62
6007 7577 2.983898 TCTACTTAGGCCCTGTTTGGTT 59.016 45.455 0.00 0.00 0.00 3.67
6008 7578 2.572104 CTCTACTTAGGCCCTGTTTGGT 59.428 50.000 0.00 0.00 0.00 3.67
6009 7579 2.092914 CCTCTACTTAGGCCCTGTTTGG 60.093 54.545 0.00 0.00 0.00 3.28
6010 7580 2.572104 ACCTCTACTTAGGCCCTGTTTG 59.428 50.000 0.00 0.00 40.62 2.93
6011 7581 2.572104 CACCTCTACTTAGGCCCTGTTT 59.428 50.000 0.00 0.00 40.62 2.83
6012 7582 2.188817 CACCTCTACTTAGGCCCTGTT 58.811 52.381 0.00 0.00 40.62 3.16
6013 7583 1.078989 ACACCTCTACTTAGGCCCTGT 59.921 52.381 0.00 0.00 40.62 4.00
6014 7584 1.757699 GACACCTCTACTTAGGCCCTG 59.242 57.143 0.00 0.00 40.62 4.45
6015 7585 1.361543 TGACACCTCTACTTAGGCCCT 59.638 52.381 0.00 0.00 40.62 5.19
6016 7586 1.757699 CTGACACCTCTACTTAGGCCC 59.242 57.143 0.00 0.00 40.62 5.80
6017 7587 1.137282 GCTGACACCTCTACTTAGGCC 59.863 57.143 0.00 0.00 40.62 5.19
6018 7588 1.137282 GGCTGACACCTCTACTTAGGC 59.863 57.143 0.00 0.00 40.62 3.93
6019 7589 2.428890 CTGGCTGACACCTCTACTTAGG 59.571 54.545 0.00 0.00 42.82 2.69
6020 7590 2.159170 GCTGGCTGACACCTCTACTTAG 60.159 54.545 0.00 0.00 0.00 2.18
6021 7591 1.825474 GCTGGCTGACACCTCTACTTA 59.175 52.381 0.00 0.00 0.00 2.24
6022 7592 0.610687 GCTGGCTGACACCTCTACTT 59.389 55.000 0.00 0.00 0.00 2.24
6023 7593 1.261238 GGCTGGCTGACACCTCTACT 61.261 60.000 0.00 0.00 0.00 2.57
6024 7594 1.219393 GGCTGGCTGACACCTCTAC 59.781 63.158 0.00 0.00 0.00 2.59
6065 7635 3.579586 AGCAATTCAATTCAAGGAGGCAA 59.420 39.130 0.00 0.00 0.00 4.52
6072 7642 2.624636 GCCCCAGCAATTCAATTCAAG 58.375 47.619 0.00 0.00 39.53 3.02
6142 7742 9.883142 GGATAGATTCCTTCATAGGTTTAGATG 57.117 37.037 0.00 0.00 42.60 2.90
6169 7770 2.537143 GGTCCATACCATCCCGTAGAT 58.463 52.381 0.00 0.00 45.98 1.98
6170 7771 2.005370 GGTCCATACCATCCCGTAGA 57.995 55.000 0.00 0.00 45.98 2.59
6182 7783 2.408565 GAACCATCCTCCAGGTCCATA 58.591 52.381 0.00 0.00 37.07 2.74
6188 7789 0.392998 CAACGGAACCATCCTCCAGG 60.393 60.000 0.00 0.00 44.17 4.45
6198 7799 1.153127 TGTGGGTGACAACGGAACC 60.153 57.895 0.00 0.00 0.00 3.62
6217 7818 1.135199 CCTGCATGATCCACAAACAGC 60.135 52.381 0.00 0.00 35.53 4.40
6381 7982 8.736244 GGTCTATGTAACCACAAATGTAATTGT 58.264 33.333 0.00 0.00 44.08 2.71
6382 7983 7.908082 CGGTCTATGTAACCACAAATGTAATTG 59.092 37.037 0.00 0.00 38.42 2.32
6383 7984 7.608761 ACGGTCTATGTAACCACAAATGTAATT 59.391 33.333 0.00 0.00 38.42 1.40
6384 7985 7.107542 ACGGTCTATGTAACCACAAATGTAAT 58.892 34.615 0.00 0.00 38.42 1.89
6402 8018 3.449377 TGTCATTCCAGCATTACGGTCTA 59.551 43.478 0.00 0.00 0.00 2.59
6447 8066 4.743644 CCTACTATTCCGGCGTCTTTAAAG 59.256 45.833 9.04 9.04 0.00 1.85
6474 8093 1.333258 GCGACGATTGCCAATCTTAGC 60.333 52.381 15.04 13.39 35.73 3.09
6501 8120 7.470702 GCTCTGATAGAGTTGCCATAAGTTAGA 60.471 40.741 7.59 0.00 44.12 2.10
6502 8121 6.644592 GCTCTGATAGAGTTGCCATAAGTTAG 59.355 42.308 7.59 0.00 44.12 2.34
6504 8123 5.363939 GCTCTGATAGAGTTGCCATAAGTT 58.636 41.667 7.59 0.00 44.12 2.66
6506 8125 4.314121 GGCTCTGATAGAGTTGCCATAAG 58.686 47.826 7.59 0.00 44.12 1.73
6507 8126 3.243873 CGGCTCTGATAGAGTTGCCATAA 60.244 47.826 7.59 0.00 44.12 1.90
6509 8128 1.069823 CGGCTCTGATAGAGTTGCCAT 59.930 52.381 7.59 0.00 44.12 4.40
6510 8129 0.461548 CGGCTCTGATAGAGTTGCCA 59.538 55.000 7.59 0.00 44.12 4.92
6514 8134 5.536538 TCAATATGACGGCTCTGATAGAGTT 59.463 40.000 7.59 0.00 44.12 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.