Multiple sequence alignment - TraesCS5A01G056100
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5A01G056100 | chr5A | 100.000 | 4592 | 0 | 0 | 1 | 4592 | 52340732 | 52345323 | 0.000000e+00 | 8480.0 |
1 | TraesCS5A01G056100 | chr5A | 90.261 | 3481 | 277 | 40 | 419 | 3877 | 52418123 | 52414683 | 0.000000e+00 | 4494.0 |
2 | TraesCS5A01G056100 | chr5A | 95.973 | 596 | 22 | 2 | 3999 | 4592 | 52350167 | 52350762 | 0.000000e+00 | 966.0 |
3 | TraesCS5A01G056100 | chr5D | 95.800 | 3857 | 139 | 14 | 160 | 3999 | 62297440 | 62301290 | 0.000000e+00 | 6204.0 |
4 | TraesCS5A01G056100 | chr5D | 90.221 | 3487 | 284 | 40 | 419 | 3877 | 62523207 | 62519750 | 0.000000e+00 | 4497.0 |
5 | TraesCS5A01G056100 | chr5D | 93.846 | 65 | 4 | 0 | 3934 | 3998 | 62307818 | 62307882 | 1.050000e-16 | 99.0 |
6 | TraesCS5A01G056100 | chr5B | 90.144 | 3338 | 269 | 42 | 599 | 3913 | 67959003 | 67962303 | 0.000000e+00 | 4287.0 |
7 | TraesCS5A01G056100 | chr5B | 94.936 | 2567 | 100 | 5 | 1444 | 3984 | 68188441 | 68185879 | 0.000000e+00 | 3993.0 |
8 | TraesCS5A01G056100 | chr5B | 96.429 | 616 | 21 | 1 | 835 | 1450 | 68189084 | 68188470 | 0.000000e+00 | 1014.0 |
9 | TraesCS5A01G056100 | chr5B | 92.453 | 265 | 15 | 4 | 450 | 709 | 68189545 | 68189281 | 1.560000e-99 | 374.0 |
10 | TraesCS5A01G056100 | chr5B | 95.000 | 160 | 6 | 2 | 1 | 159 | 525601141 | 525601299 | 2.740000e-62 | 250.0 |
11 | TraesCS5A01G056100 | chr5B | 92.308 | 65 | 5 | 0 | 3934 | 3998 | 68176862 | 68176798 | 4.890000e-15 | 93.5 |
12 | TraesCS5A01G056100 | chr2B | 79.721 | 1578 | 272 | 43 | 2262 | 3817 | 526379637 | 526381188 | 0.000000e+00 | 1098.0 |
13 | TraesCS5A01G056100 | chr2B | 85.685 | 489 | 66 | 2 | 2262 | 2747 | 525826375 | 525826862 | 3.170000e-141 | 512.0 |
14 | TraesCS5A01G056100 | chr2B | 86.325 | 468 | 61 | 2 | 2247 | 2714 | 525830108 | 525830572 | 1.470000e-139 | 507.0 |
15 | TraesCS5A01G056100 | chr2B | 100.000 | 29 | 0 | 0 | 183 | 211 | 237176497 | 237176525 | 2.000000e-03 | 54.7 |
16 | TraesCS5A01G056100 | chr2D | 79.410 | 1593 | 264 | 47 | 2262 | 3817 | 446603633 | 446605198 | 0.000000e+00 | 1066.0 |
17 | TraesCS5A01G056100 | chr2D | 86.008 | 486 | 67 | 1 | 2262 | 2747 | 446318666 | 446319150 | 1.890000e-143 | 520.0 |
18 | TraesCS5A01G056100 | chr2D | 80.534 | 262 | 48 | 3 | 1186 | 1446 | 446600185 | 446600444 | 1.010000e-46 | 198.0 |
19 | TraesCS5A01G056100 | chr1A | 98.490 | 596 | 7 | 2 | 3999 | 4592 | 487719745 | 487720340 | 0.000000e+00 | 1050.0 |
20 | TraesCS5A01G056100 | chr1A | 96.134 | 595 | 21 | 2 | 3999 | 4592 | 486684803 | 486684210 | 0.000000e+00 | 970.0 |
21 | TraesCS5A01G056100 | chr1A | 94.463 | 596 | 31 | 2 | 3999 | 4592 | 565145851 | 565146446 | 0.000000e+00 | 917.0 |
22 | TraesCS5A01G056100 | chr4A | 97.987 | 596 | 10 | 2 | 3999 | 4592 | 1734672 | 1735267 | 0.000000e+00 | 1033.0 |
23 | TraesCS5A01G056100 | chr7A | 93.782 | 595 | 36 | 1 | 3999 | 4592 | 70194797 | 70194203 | 0.000000e+00 | 893.0 |
24 | TraesCS5A01G056100 | chrUn | 89.244 | 595 | 63 | 1 | 3998 | 4591 | 352578046 | 352577452 | 0.000000e+00 | 743.0 |
25 | TraesCS5A01G056100 | chr6D | 89.244 | 595 | 62 | 2 | 4000 | 4592 | 408885933 | 408886527 | 0.000000e+00 | 743.0 |
26 | TraesCS5A01G056100 | chr2A | 83.505 | 776 | 124 | 4 | 3034 | 3807 | 590639021 | 590639794 | 0.000000e+00 | 721.0 |
27 | TraesCS5A01G056100 | chr2A | 81.731 | 832 | 145 | 3 | 3023 | 3853 | 589792296 | 589793121 | 0.000000e+00 | 688.0 |
28 | TraesCS5A01G056100 | chr2A | 86.965 | 491 | 63 | 1 | 2257 | 2747 | 589791523 | 589792012 | 6.710000e-153 | 551.0 |
29 | TraesCS5A01G056100 | chr3B | 88.442 | 597 | 63 | 6 | 3999 | 4591 | 778303022 | 778303616 | 0.000000e+00 | 715.0 |
30 | TraesCS5A01G056100 | chr3A | 95.597 | 159 | 7 | 0 | 1 | 159 | 30752708 | 30752866 | 5.900000e-64 | 255.0 |
31 | TraesCS5A01G056100 | chr3A | 94.969 | 159 | 8 | 0 | 1 | 159 | 249855409 | 249855251 | 2.740000e-62 | 250.0 |
32 | TraesCS5A01G056100 | chr6B | 94.969 | 159 | 8 | 0 | 1 | 159 | 718624555 | 718624397 | 2.740000e-62 | 250.0 |
33 | TraesCS5A01G056100 | chr6B | 94.340 | 159 | 9 | 0 | 1 | 159 | 88720262 | 88720420 | 1.280000e-60 | 244.0 |
34 | TraesCS5A01G056100 | chr4B | 94.969 | 159 | 8 | 0 | 1 | 159 | 59977991 | 59977833 | 2.740000e-62 | 250.0 |
35 | TraesCS5A01G056100 | chr4B | 94.969 | 159 | 8 | 0 | 1 | 159 | 315477119 | 315477277 | 2.740000e-62 | 250.0 |
36 | TraesCS5A01G056100 | chr7B | 94.340 | 159 | 9 | 0 | 1 | 159 | 521120911 | 521121069 | 1.280000e-60 | 244.0 |
37 | TraesCS5A01G056100 | chr4D | 94.340 | 159 | 9 | 0 | 1 | 159 | 118311193 | 118311035 | 1.280000e-60 | 244.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5A01G056100 | chr5A | 52340732 | 52345323 | 4591 | False | 8480.000000 | 8480 | 100.000 | 1 | 4592 | 1 | chr5A.!!$F1 | 4591 |
1 | TraesCS5A01G056100 | chr5A | 52414683 | 52418123 | 3440 | True | 4494.000000 | 4494 | 90.261 | 419 | 3877 | 1 | chr5A.!!$R1 | 3458 |
2 | TraesCS5A01G056100 | chr5A | 52350167 | 52350762 | 595 | False | 966.000000 | 966 | 95.973 | 3999 | 4592 | 1 | chr5A.!!$F2 | 593 |
3 | TraesCS5A01G056100 | chr5D | 62297440 | 62301290 | 3850 | False | 6204.000000 | 6204 | 95.800 | 160 | 3999 | 1 | chr5D.!!$F1 | 3839 |
4 | TraesCS5A01G056100 | chr5D | 62519750 | 62523207 | 3457 | True | 4497.000000 | 4497 | 90.221 | 419 | 3877 | 1 | chr5D.!!$R1 | 3458 |
5 | TraesCS5A01G056100 | chr5B | 67959003 | 67962303 | 3300 | False | 4287.000000 | 4287 | 90.144 | 599 | 3913 | 1 | chr5B.!!$F1 | 3314 |
6 | TraesCS5A01G056100 | chr5B | 68185879 | 68189545 | 3666 | True | 1793.666667 | 3993 | 94.606 | 450 | 3984 | 3 | chr5B.!!$R2 | 3534 |
7 | TraesCS5A01G056100 | chr2B | 526379637 | 526381188 | 1551 | False | 1098.000000 | 1098 | 79.721 | 2262 | 3817 | 1 | chr2B.!!$F2 | 1555 |
8 | TraesCS5A01G056100 | chr2B | 525826375 | 525830572 | 4197 | False | 509.500000 | 512 | 86.005 | 2247 | 2747 | 2 | chr2B.!!$F3 | 500 |
9 | TraesCS5A01G056100 | chr2D | 446600185 | 446605198 | 5013 | False | 632.000000 | 1066 | 79.972 | 1186 | 3817 | 2 | chr2D.!!$F2 | 2631 |
10 | TraesCS5A01G056100 | chr1A | 487719745 | 487720340 | 595 | False | 1050.000000 | 1050 | 98.490 | 3999 | 4592 | 1 | chr1A.!!$F1 | 593 |
11 | TraesCS5A01G056100 | chr1A | 486684210 | 486684803 | 593 | True | 970.000000 | 970 | 96.134 | 3999 | 4592 | 1 | chr1A.!!$R1 | 593 |
12 | TraesCS5A01G056100 | chr1A | 565145851 | 565146446 | 595 | False | 917.000000 | 917 | 94.463 | 3999 | 4592 | 1 | chr1A.!!$F2 | 593 |
13 | TraesCS5A01G056100 | chr4A | 1734672 | 1735267 | 595 | False | 1033.000000 | 1033 | 97.987 | 3999 | 4592 | 1 | chr4A.!!$F1 | 593 |
14 | TraesCS5A01G056100 | chr7A | 70194203 | 70194797 | 594 | True | 893.000000 | 893 | 93.782 | 3999 | 4592 | 1 | chr7A.!!$R1 | 593 |
15 | TraesCS5A01G056100 | chrUn | 352577452 | 352578046 | 594 | True | 743.000000 | 743 | 89.244 | 3998 | 4591 | 1 | chrUn.!!$R1 | 593 |
16 | TraesCS5A01G056100 | chr6D | 408885933 | 408886527 | 594 | False | 743.000000 | 743 | 89.244 | 4000 | 4592 | 1 | chr6D.!!$F1 | 592 |
17 | TraesCS5A01G056100 | chr2A | 590639021 | 590639794 | 773 | False | 721.000000 | 721 | 83.505 | 3034 | 3807 | 1 | chr2A.!!$F1 | 773 |
18 | TraesCS5A01G056100 | chr2A | 589791523 | 589793121 | 1598 | False | 619.500000 | 688 | 84.348 | 2257 | 3853 | 2 | chr2A.!!$F2 | 1596 |
19 | TraesCS5A01G056100 | chr3B | 778303022 | 778303616 | 594 | False | 715.000000 | 715 | 88.442 | 3999 | 4591 | 1 | chr3B.!!$F1 | 592 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
240 | 241 | 0.036858 | GCGGGGAGCCAGAATAGATC | 60.037 | 60.0 | 0.00 | 0.0 | 40.81 | 2.75 | F |
973 | 1129 | 0.036952 | GAGGCAGACAAGCAGTAGCA | 60.037 | 55.0 | 7.97 | 0.0 | 45.49 | 3.49 | F |
2315 | 5228 | 0.105607 | CCTACCTACCCTCCCTCCAC | 60.106 | 65.0 | 0.00 | 0.0 | 0.00 | 4.02 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2157 | 4868 | 0.804933 | AAGTCCTCGTTTATCGGCGC | 60.805 | 55.0 | 0.0 | 0.0 | 40.32 | 6.53 | R |
2432 | 5345 | 0.962356 | CAAGGGACGGCAAGCAAGAT | 60.962 | 55.0 | 0.0 | 0.0 | 0.00 | 2.40 | R |
3746 | 6724 | 0.896226 | GGTAGTTGAGGAAGCCGAGT | 59.104 | 55.0 | 0.0 | 0.0 | 0.00 | 4.18 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
27 | 28 | 9.508642 | AGAGAAATAAACCAGACTTTCCTTAAG | 57.491 | 33.333 | 0.00 | 0.00 | 39.87 | 1.85 |
28 | 29 | 8.112016 | AGAAATAAACCAGACTTTCCTTAAGC | 57.888 | 34.615 | 0.00 | 0.00 | 37.37 | 3.09 |
29 | 30 | 7.724061 | AGAAATAAACCAGACTTTCCTTAAGCA | 59.276 | 33.333 | 0.00 | 0.00 | 37.37 | 3.91 |
30 | 31 | 6.819397 | ATAAACCAGACTTTCCTTAAGCAC | 57.181 | 37.500 | 0.00 | 0.00 | 37.37 | 4.40 |
31 | 32 | 2.767505 | ACCAGACTTTCCTTAAGCACG | 58.232 | 47.619 | 0.00 | 0.00 | 37.37 | 5.34 |
32 | 33 | 2.076863 | CCAGACTTTCCTTAAGCACGG | 58.923 | 52.381 | 0.00 | 0.00 | 37.37 | 4.94 |
33 | 34 | 2.076863 | CAGACTTTCCTTAAGCACGGG | 58.923 | 52.381 | 0.00 | 0.00 | 37.37 | 5.28 |
34 | 35 | 1.697982 | AGACTTTCCTTAAGCACGGGT | 59.302 | 47.619 | 0.00 | 0.00 | 37.37 | 5.28 |
35 | 36 | 1.804748 | GACTTTCCTTAAGCACGGGTG | 59.195 | 52.381 | 0.00 | 0.00 | 37.37 | 4.61 |
48 | 49 | 3.740044 | CACGGGTGCTTATTTGTACAG | 57.260 | 47.619 | 0.00 | 0.00 | 0.00 | 2.74 |
49 | 50 | 2.418628 | CACGGGTGCTTATTTGTACAGG | 59.581 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
50 | 51 | 2.303600 | ACGGGTGCTTATTTGTACAGGA | 59.696 | 45.455 | 0.00 | 0.00 | 0.00 | 3.86 |
51 | 52 | 3.054655 | ACGGGTGCTTATTTGTACAGGAT | 60.055 | 43.478 | 0.00 | 0.00 | 0.00 | 3.24 |
52 | 53 | 4.162698 | ACGGGTGCTTATTTGTACAGGATA | 59.837 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
53 | 54 | 4.750098 | CGGGTGCTTATTTGTACAGGATAG | 59.250 | 45.833 | 0.00 | 0.00 | 0.00 | 2.08 |
54 | 55 | 5.452776 | CGGGTGCTTATTTGTACAGGATAGA | 60.453 | 44.000 | 0.00 | 0.00 | 0.00 | 1.98 |
55 | 56 | 5.758784 | GGGTGCTTATTTGTACAGGATAGAC | 59.241 | 44.000 | 0.00 | 0.00 | 0.00 | 2.59 |
56 | 57 | 5.462398 | GGTGCTTATTTGTACAGGATAGACG | 59.538 | 44.000 | 0.00 | 0.00 | 0.00 | 4.18 |
57 | 58 | 5.047847 | TGCTTATTTGTACAGGATAGACGC | 58.952 | 41.667 | 0.00 | 4.64 | 0.00 | 5.19 |
58 | 59 | 5.163447 | TGCTTATTTGTACAGGATAGACGCT | 60.163 | 40.000 | 0.00 | 0.00 | 0.00 | 5.07 |
59 | 60 | 5.753921 | GCTTATTTGTACAGGATAGACGCTT | 59.246 | 40.000 | 0.00 | 0.00 | 0.00 | 4.68 |
60 | 61 | 6.921857 | GCTTATTTGTACAGGATAGACGCTTA | 59.078 | 38.462 | 0.00 | 0.00 | 0.00 | 3.09 |
61 | 62 | 7.437267 | GCTTATTTGTACAGGATAGACGCTTAA | 59.563 | 37.037 | 0.00 | 0.00 | 0.00 | 1.85 |
62 | 63 | 8.638685 | TTATTTGTACAGGATAGACGCTTAAC | 57.361 | 34.615 | 0.00 | 0.00 | 0.00 | 2.01 |
63 | 64 | 5.909621 | TTGTACAGGATAGACGCTTAACT | 57.090 | 39.130 | 0.00 | 0.00 | 0.00 | 2.24 |
64 | 65 | 7.395190 | TTTGTACAGGATAGACGCTTAACTA | 57.605 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
65 | 66 | 7.395190 | TTGTACAGGATAGACGCTTAACTAA | 57.605 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
66 | 67 | 7.024340 | TGTACAGGATAGACGCTTAACTAAG | 57.976 | 40.000 | 0.00 | 0.00 | 36.40 | 2.18 |
67 | 68 | 6.600822 | TGTACAGGATAGACGCTTAACTAAGT | 59.399 | 38.462 | 0.00 | 0.00 | 35.75 | 2.24 |
68 | 69 | 5.892568 | ACAGGATAGACGCTTAACTAAGTG | 58.107 | 41.667 | 8.20 | 8.20 | 46.35 | 3.16 |
76 | 77 | 3.771798 | CGCTTAACTAAGTGTCTCTCCC | 58.228 | 50.000 | 2.48 | 0.00 | 38.60 | 4.30 |
77 | 78 | 3.731264 | CGCTTAACTAAGTGTCTCTCCCG | 60.731 | 52.174 | 2.48 | 0.00 | 38.60 | 5.14 |
78 | 79 | 3.193056 | GCTTAACTAAGTGTCTCTCCCGT | 59.807 | 47.826 | 0.00 | 0.00 | 35.75 | 5.28 |
79 | 80 | 4.397417 | GCTTAACTAAGTGTCTCTCCCGTA | 59.603 | 45.833 | 0.00 | 0.00 | 35.75 | 4.02 |
80 | 81 | 5.448904 | GCTTAACTAAGTGTCTCTCCCGTAG | 60.449 | 48.000 | 0.00 | 0.00 | 35.75 | 3.51 |
81 | 82 | 3.996921 | ACTAAGTGTCTCTCCCGTAGA | 57.003 | 47.619 | 0.00 | 0.00 | 0.00 | 2.59 |
82 | 83 | 4.298103 | ACTAAGTGTCTCTCCCGTAGAA | 57.702 | 45.455 | 0.00 | 0.00 | 32.46 | 2.10 |
83 | 84 | 4.660168 | ACTAAGTGTCTCTCCCGTAGAAA | 58.340 | 43.478 | 0.00 | 0.00 | 32.46 | 2.52 |
84 | 85 | 5.262804 | ACTAAGTGTCTCTCCCGTAGAAAT | 58.737 | 41.667 | 0.00 | 0.00 | 32.46 | 2.17 |
85 | 86 | 6.421485 | ACTAAGTGTCTCTCCCGTAGAAATA | 58.579 | 40.000 | 0.00 | 0.00 | 32.46 | 1.40 |
86 | 87 | 5.838531 | AAGTGTCTCTCCCGTAGAAATAG | 57.161 | 43.478 | 0.00 | 0.00 | 32.46 | 1.73 |
87 | 88 | 4.208746 | AGTGTCTCTCCCGTAGAAATAGG | 58.791 | 47.826 | 0.00 | 0.00 | 32.46 | 2.57 |
88 | 89 | 2.957006 | TGTCTCTCCCGTAGAAATAGGC | 59.043 | 50.000 | 0.00 | 0.00 | 32.46 | 3.93 |
89 | 90 | 2.957006 | GTCTCTCCCGTAGAAATAGGCA | 59.043 | 50.000 | 0.00 | 0.00 | 32.46 | 4.75 |
90 | 91 | 2.957006 | TCTCTCCCGTAGAAATAGGCAC | 59.043 | 50.000 | 0.00 | 0.00 | 32.46 | 5.01 |
91 | 92 | 2.036089 | CTCTCCCGTAGAAATAGGCACC | 59.964 | 54.545 | 0.00 | 0.00 | 32.46 | 5.01 |
92 | 93 | 0.748450 | TCCCGTAGAAATAGGCACCG | 59.252 | 55.000 | 0.00 | 0.00 | 0.00 | 4.94 |
93 | 94 | 0.249741 | CCCGTAGAAATAGGCACCGG | 60.250 | 60.000 | 0.00 | 0.00 | 0.00 | 5.28 |
94 | 95 | 0.462789 | CCGTAGAAATAGGCACCGGT | 59.537 | 55.000 | 0.00 | 0.00 | 0.00 | 5.28 |
95 | 96 | 1.567504 | CGTAGAAATAGGCACCGGTG | 58.432 | 55.000 | 30.66 | 30.66 | 0.00 | 4.94 |
105 | 106 | 4.473643 | CACCGGTGCTTCAGGAAA | 57.526 | 55.556 | 24.02 | 0.00 | 35.40 | 3.13 |
106 | 107 | 2.714259 | CACCGGTGCTTCAGGAAAA | 58.286 | 52.632 | 24.02 | 0.00 | 35.40 | 2.29 |
107 | 108 | 0.310854 | CACCGGTGCTTCAGGAAAAC | 59.689 | 55.000 | 24.02 | 0.00 | 35.40 | 2.43 |
108 | 109 | 0.182775 | ACCGGTGCTTCAGGAAAACT | 59.817 | 50.000 | 6.12 | 0.00 | 35.40 | 2.66 |
109 | 110 | 0.875059 | CCGGTGCTTCAGGAAAACTC | 59.125 | 55.000 | 0.00 | 0.00 | 33.18 | 3.01 |
110 | 111 | 0.512952 | CGGTGCTTCAGGAAAACTCG | 59.487 | 55.000 | 0.00 | 0.00 | 0.00 | 4.18 |
111 | 112 | 0.875059 | GGTGCTTCAGGAAAACTCGG | 59.125 | 55.000 | 0.00 | 0.00 | 0.00 | 4.63 |
112 | 113 | 1.594331 | GTGCTTCAGGAAAACTCGGT | 58.406 | 50.000 | 0.00 | 0.00 | 0.00 | 4.69 |
113 | 114 | 1.947456 | GTGCTTCAGGAAAACTCGGTT | 59.053 | 47.619 | 0.00 | 0.00 | 0.00 | 4.44 |
114 | 115 | 2.357952 | GTGCTTCAGGAAAACTCGGTTT | 59.642 | 45.455 | 0.00 | 0.00 | 37.34 | 3.27 |
115 | 116 | 3.562557 | GTGCTTCAGGAAAACTCGGTTTA | 59.437 | 43.478 | 3.01 | 0.00 | 34.43 | 2.01 |
116 | 117 | 4.215613 | GTGCTTCAGGAAAACTCGGTTTAT | 59.784 | 41.667 | 3.01 | 0.00 | 34.43 | 1.40 |
117 | 118 | 4.825085 | TGCTTCAGGAAAACTCGGTTTATT | 59.175 | 37.500 | 3.01 | 0.00 | 34.43 | 1.40 |
118 | 119 | 5.300792 | TGCTTCAGGAAAACTCGGTTTATTT | 59.699 | 36.000 | 3.01 | 0.00 | 34.43 | 1.40 |
119 | 120 | 6.183360 | TGCTTCAGGAAAACTCGGTTTATTTT | 60.183 | 34.615 | 3.01 | 0.00 | 34.43 | 1.82 |
120 | 121 | 6.700081 | GCTTCAGGAAAACTCGGTTTATTTTT | 59.300 | 34.615 | 3.01 | 0.00 | 34.43 | 1.94 |
121 | 122 | 7.096189 | GCTTCAGGAAAACTCGGTTTATTTTTC | 60.096 | 37.037 | 3.01 | 0.00 | 34.43 | 2.29 |
122 | 123 | 7.576861 | TCAGGAAAACTCGGTTTATTTTTCT | 57.423 | 32.000 | 3.01 | 0.00 | 37.84 | 2.52 |
123 | 124 | 8.680039 | TCAGGAAAACTCGGTTTATTTTTCTA | 57.320 | 30.769 | 3.01 | 0.00 | 37.84 | 2.10 |
124 | 125 | 9.122779 | TCAGGAAAACTCGGTTTATTTTTCTAA | 57.877 | 29.630 | 3.01 | 0.00 | 37.84 | 2.10 |
125 | 126 | 9.738832 | CAGGAAAACTCGGTTTATTTTTCTAAA | 57.261 | 29.630 | 3.01 | 0.00 | 37.84 | 1.85 |
126 | 127 | 9.740239 | AGGAAAACTCGGTTTATTTTTCTAAAC | 57.260 | 29.630 | 3.01 | 0.00 | 39.70 | 2.01 |
127 | 128 | 9.518906 | GGAAAACTCGGTTTATTTTTCTAAACA | 57.481 | 29.630 | 8.47 | 0.00 | 41.36 | 2.83 |
129 | 130 | 8.861033 | AAACTCGGTTTATTTTTCTAAACACC | 57.139 | 30.769 | 8.47 | 0.00 | 41.36 | 4.16 |
130 | 131 | 7.812690 | ACTCGGTTTATTTTTCTAAACACCT | 57.187 | 32.000 | 8.47 | 0.00 | 41.36 | 4.00 |
131 | 132 | 7.868775 | ACTCGGTTTATTTTTCTAAACACCTC | 58.131 | 34.615 | 8.47 | 0.00 | 41.36 | 3.85 |
132 | 133 | 7.718314 | ACTCGGTTTATTTTTCTAAACACCTCT | 59.282 | 33.333 | 8.47 | 0.00 | 41.36 | 3.69 |
133 | 134 | 8.091385 | TCGGTTTATTTTTCTAAACACCTCTC | 57.909 | 34.615 | 8.47 | 0.00 | 41.36 | 3.20 |
134 | 135 | 7.935210 | TCGGTTTATTTTTCTAAACACCTCTCT | 59.065 | 33.333 | 8.47 | 0.00 | 41.36 | 3.10 |
135 | 136 | 9.211485 | CGGTTTATTTTTCTAAACACCTCTCTA | 57.789 | 33.333 | 8.47 | 0.00 | 41.36 | 2.43 |
139 | 140 | 9.787435 | TTATTTTTCTAAACACCTCTCTAAGCA | 57.213 | 29.630 | 0.00 | 0.00 | 0.00 | 3.91 |
140 | 141 | 7.492352 | TTTTTCTAAACACCTCTCTAAGCAC | 57.508 | 36.000 | 0.00 | 0.00 | 0.00 | 4.40 |
141 | 142 | 4.803098 | TCTAAACACCTCTCTAAGCACC | 57.197 | 45.455 | 0.00 | 0.00 | 0.00 | 5.01 |
142 | 143 | 4.417437 | TCTAAACACCTCTCTAAGCACCT | 58.583 | 43.478 | 0.00 | 0.00 | 0.00 | 4.00 |
143 | 144 | 3.686916 | AAACACCTCTCTAAGCACCTC | 57.313 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
144 | 145 | 1.562783 | ACACCTCTCTAAGCACCTCC | 58.437 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
145 | 146 | 0.827368 | CACCTCTCTAAGCACCTCCC | 59.173 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
146 | 147 | 0.413832 | ACCTCTCTAAGCACCTCCCA | 59.586 | 55.000 | 0.00 | 0.00 | 0.00 | 4.37 |
147 | 148 | 1.008938 | ACCTCTCTAAGCACCTCCCAT | 59.991 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
148 | 149 | 2.122768 | CCTCTCTAAGCACCTCCCATT | 58.877 | 52.381 | 0.00 | 0.00 | 0.00 | 3.16 |
149 | 150 | 2.158842 | CCTCTCTAAGCACCTCCCATTG | 60.159 | 54.545 | 0.00 | 0.00 | 0.00 | 2.82 |
150 | 151 | 2.503356 | CTCTCTAAGCACCTCCCATTGT | 59.497 | 50.000 | 0.00 | 0.00 | 0.00 | 2.71 |
151 | 152 | 3.706594 | CTCTCTAAGCACCTCCCATTGTA | 59.293 | 47.826 | 0.00 | 0.00 | 0.00 | 2.41 |
152 | 153 | 3.451178 | TCTCTAAGCACCTCCCATTGTAC | 59.549 | 47.826 | 0.00 | 0.00 | 0.00 | 2.90 |
153 | 154 | 3.178046 | TCTAAGCACCTCCCATTGTACA | 58.822 | 45.455 | 0.00 | 0.00 | 0.00 | 2.90 |
154 | 155 | 2.969821 | AAGCACCTCCCATTGTACAA | 57.030 | 45.000 | 11.41 | 11.41 | 0.00 | 2.41 |
155 | 156 | 2.496899 | AGCACCTCCCATTGTACAAG | 57.503 | 50.000 | 14.65 | 6.30 | 0.00 | 3.16 |
156 | 157 | 1.004745 | AGCACCTCCCATTGTACAAGG | 59.995 | 52.381 | 14.65 | 13.92 | 0.00 | 3.61 |
157 | 158 | 1.463674 | CACCTCCCATTGTACAAGGC | 58.536 | 55.000 | 14.66 | 0.00 | 0.00 | 4.35 |
158 | 159 | 0.331616 | ACCTCCCATTGTACAAGGCC | 59.668 | 55.000 | 14.66 | 0.00 | 0.00 | 5.19 |
163 | 164 | 0.610785 | CCATTGTACAAGGCCGGGTT | 60.611 | 55.000 | 14.66 | 0.00 | 0.00 | 4.11 |
173 | 174 | 2.717044 | GGCCGGGTTGTTAATGCCC | 61.717 | 63.158 | 2.18 | 0.00 | 39.03 | 5.36 |
176 | 177 | 1.190643 | CCGGGTTGTTAATGCCCATT | 58.809 | 50.000 | 0.00 | 0.00 | 42.44 | 3.16 |
177 | 178 | 1.552792 | CCGGGTTGTTAATGCCCATTT | 59.447 | 47.619 | 0.00 | 0.00 | 42.44 | 2.32 |
185 | 186 | 5.690464 | TGTTAATGCCCATTTTATTGCCT | 57.310 | 34.783 | 0.00 | 0.00 | 32.50 | 4.75 |
240 | 241 | 0.036858 | GCGGGGAGCCAGAATAGATC | 60.037 | 60.000 | 0.00 | 0.00 | 40.81 | 2.75 |
250 | 251 | 3.858868 | GAATAGATCGGCGCCGGCA | 62.859 | 63.158 | 44.95 | 30.18 | 42.47 | 5.69 |
273 | 274 | 1.144057 | GACCGCCTCGTCATCCAAT | 59.856 | 57.895 | 0.00 | 0.00 | 32.74 | 3.16 |
301 | 302 | 1.021390 | AGGCATCTTGTTCGGCTTCG | 61.021 | 55.000 | 0.00 | 0.00 | 30.19 | 3.79 |
348 | 349 | 2.354203 | CGCAGAGACTAAGGCCTTCTTT | 60.354 | 50.000 | 24.49 | 5.61 | 36.93 | 2.52 |
402 | 403 | 1.334869 | CCATACAAATCAAGCTCGGCC | 59.665 | 52.381 | 0.00 | 0.00 | 0.00 | 6.13 |
434 | 435 | 4.113354 | CTGTCTCCGCCTAGTTATTTGTC | 58.887 | 47.826 | 0.00 | 0.00 | 0.00 | 3.18 |
529 | 530 | 9.796120 | TTGTTTTGTTGTAATTCTAAGTTCTGG | 57.204 | 29.630 | 0.00 | 0.00 | 0.00 | 3.86 |
561 | 562 | 2.583024 | TCATGTTTGTCCCAGATGCA | 57.417 | 45.000 | 0.00 | 0.00 | 0.00 | 3.96 |
587 | 590 | 4.984295 | TCCCACTTCATGAATCAGTCAAA | 58.016 | 39.130 | 8.96 | 0.00 | 40.50 | 2.69 |
688 | 697 | 6.776116 | AGGATGATGACACATTGATAGCAAAT | 59.224 | 34.615 | 0.00 | 0.00 | 37.59 | 2.32 |
691 | 700 | 6.566141 | TGATGACACATTGATAGCAAATTGG | 58.434 | 36.000 | 0.00 | 0.00 | 37.59 | 3.16 |
692 | 701 | 4.746729 | TGACACATTGATAGCAAATTGGC | 58.253 | 39.130 | 0.00 | 0.00 | 37.59 | 4.52 |
703 | 721 | 2.058057 | GCAAATTGGCGTTGTTGGTAG | 58.942 | 47.619 | 0.00 | 0.00 | 0.00 | 3.18 |
743 | 766 | 6.269077 | TCACATGTACCTCCTTTTCTACTTCA | 59.731 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
752 | 775 | 8.877195 | ACCTCCTTTTCTACTTCAATGTTAGTA | 58.123 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
847 | 995 | 2.306219 | TGGTTGTCGGTAATGATGGGAA | 59.694 | 45.455 | 0.00 | 0.00 | 0.00 | 3.97 |
857 | 1005 | 7.881232 | GTCGGTAATGATGGGAATAAAATAGGA | 59.119 | 37.037 | 0.00 | 0.00 | 0.00 | 2.94 |
891 | 1039 | 1.839354 | TGGTCCTGCTGATGCTATCAA | 59.161 | 47.619 | 0.00 | 0.00 | 39.11 | 2.57 |
954 | 1110 | 0.609957 | TGTTGAGGCATGCAAGAGGG | 60.610 | 55.000 | 21.36 | 0.00 | 0.00 | 4.30 |
972 | 1128 | 0.742635 | GGAGGCAGACAAGCAGTAGC | 60.743 | 60.000 | 0.00 | 0.00 | 42.56 | 3.58 |
973 | 1129 | 0.036952 | GAGGCAGACAAGCAGTAGCA | 60.037 | 55.000 | 7.97 | 0.00 | 45.49 | 3.49 |
1006 | 1162 | 1.310933 | AAGAAGAAGCGCCATGGCAG | 61.311 | 55.000 | 34.93 | 26.77 | 42.06 | 4.85 |
1223 | 1382 | 3.194062 | CGTTGTTTCCCATTTGCAGTTT | 58.806 | 40.909 | 0.00 | 0.00 | 0.00 | 2.66 |
1335 | 1494 | 2.860735 | CGGTGACTACAGCTGCTAATTC | 59.139 | 50.000 | 15.27 | 4.26 | 41.65 | 2.17 |
1441 | 1600 | 5.720371 | TTGGTCCATTTATGTTTCTGGTG | 57.280 | 39.130 | 0.00 | 0.00 | 0.00 | 4.17 |
1458 | 2102 | 9.202273 | GTTTCTGGTGATATACATCTTCATCTC | 57.798 | 37.037 | 0.00 | 0.00 | 31.93 | 2.75 |
1747 | 4414 | 4.301628 | CTCACCAAATTTGAAGGAAGTGC | 58.698 | 43.478 | 19.86 | 0.00 | 0.00 | 4.40 |
1752 | 4419 | 4.301628 | CAAATTTGAAGGAAGTGCTGTCC | 58.698 | 43.478 | 13.08 | 0.00 | 35.17 | 4.02 |
1844 | 4511 | 7.765695 | AAAGCAAAATAGAGACCTGATTTCA | 57.234 | 32.000 | 0.00 | 0.00 | 0.00 | 2.69 |
1917 | 4584 | 1.137479 | CCAACCATTTAGCCTGGCATG | 59.863 | 52.381 | 22.65 | 15.36 | 37.27 | 4.06 |
1922 | 4593 | 3.458118 | ACCATTTAGCCTGGCATGTACTA | 59.542 | 43.478 | 22.65 | 0.00 | 37.27 | 1.82 |
1925 | 4596 | 5.643777 | CCATTTAGCCTGGCATGTACTATAC | 59.356 | 44.000 | 22.65 | 0.00 | 0.00 | 1.47 |
1927 | 4598 | 5.723672 | TTAGCCTGGCATGTACTATACTC | 57.276 | 43.478 | 22.65 | 0.00 | 0.00 | 2.59 |
1944 | 4615 | 2.423577 | ACTCGACACAAACCATAAGCC | 58.576 | 47.619 | 0.00 | 0.00 | 0.00 | 4.35 |
1946 | 4617 | 3.009723 | CTCGACACAAACCATAAGCCAT | 58.990 | 45.455 | 0.00 | 0.00 | 0.00 | 4.40 |
2128 | 4838 | 6.291637 | CGAAAGATACAGTACATACTTTGGCG | 60.292 | 42.308 | 0.00 | 0.00 | 33.46 | 5.69 |
2157 | 4868 | 7.393234 | TCCTTGACAATGAAACCCACTTATTAG | 59.607 | 37.037 | 0.00 | 0.00 | 0.00 | 1.73 |
2168 | 4879 | 3.185797 | CCCACTTATTAGCGCCGATAAAC | 59.814 | 47.826 | 2.29 | 0.00 | 0.00 | 2.01 |
2315 | 5228 | 0.105607 | CCTACCTACCCTCCCTCCAC | 60.106 | 65.000 | 0.00 | 0.00 | 0.00 | 4.02 |
2423 | 5336 | 1.475280 | CTGAGTGCATTTGGTGATGGG | 59.525 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
2432 | 5345 | 4.447290 | CATTTGGTGATGGGTGTATACGA | 58.553 | 43.478 | 0.00 | 0.00 | 0.00 | 3.43 |
2731 | 5653 | 3.767673 | CAGGTGGTACAAGCTACTTCCTA | 59.232 | 47.826 | 0.58 | 0.00 | 44.16 | 2.94 |
2988 | 5951 | 3.143211 | AGAGAGTAGCGTACCCCATAG | 57.857 | 52.381 | 0.00 | 0.00 | 0.00 | 2.23 |
3022 | 5992 | 4.361783 | TCCATTCCCTAACTCTGTGATGA | 58.638 | 43.478 | 0.00 | 0.00 | 0.00 | 2.92 |
3023 | 5993 | 4.971282 | TCCATTCCCTAACTCTGTGATGAT | 59.029 | 41.667 | 0.00 | 0.00 | 0.00 | 2.45 |
3024 | 5994 | 5.061853 | CCATTCCCTAACTCTGTGATGATG | 58.938 | 45.833 | 0.00 | 0.00 | 0.00 | 3.07 |
3111 | 6088 | 1.752198 | CGTGACCAAGGTGGAGGAA | 59.248 | 57.895 | 0.18 | 0.00 | 40.96 | 3.36 |
3442 | 6419 | 3.058846 | GGTTGTCGAGAAAAAGAGGAAGC | 60.059 | 47.826 | 0.00 | 0.00 | 0.00 | 3.86 |
3528 | 6505 | 2.981560 | GACGTCGTTCACCGGGCTA | 61.982 | 63.158 | 6.32 | 0.00 | 37.11 | 3.93 |
3573 | 6550 | 0.104120 | CACGGGGCATGAAGTCGATA | 59.896 | 55.000 | 0.00 | 0.00 | 0.00 | 2.92 |
3684 | 6662 | 4.228567 | GGGTAGGCTGGCTCGAGC | 62.229 | 72.222 | 29.38 | 29.38 | 38.34 | 5.03 |
3746 | 6724 | 3.537580 | GGTTGTGGCTGTTATCGGATTA | 58.462 | 45.455 | 0.00 | 0.00 | 0.00 | 1.75 |
3820 | 6798 | 0.859232 | CAACGCGTTGCTAGAGTTGT | 59.141 | 50.000 | 35.89 | 1.91 | 41.97 | 3.32 |
3836 | 6814 | 1.269448 | GTTGTGCCAACGGTTGATCAT | 59.731 | 47.619 | 21.88 | 0.00 | 0.00 | 2.45 |
3841 | 6819 | 2.824936 | TGCCAACGGTTGATCATGATTT | 59.175 | 40.909 | 21.88 | 0.00 | 0.00 | 2.17 |
3856 | 6834 | 6.628919 | TCATGATTTGCCTTGACATATCAG | 57.371 | 37.500 | 0.00 | 0.00 | 40.02 | 2.90 |
3863 | 6841 | 5.231702 | TGCCTTGACATATCAGATATGCA | 57.768 | 39.130 | 24.90 | 20.55 | 45.05 | 3.96 |
3917 | 6901 | 6.382282 | AGGATGTCTGATTCACTATGTCTTGA | 59.618 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
3943 | 6927 | 2.535984 | GTCAAGTCTGTTGTCACGACTG | 59.464 | 50.000 | 0.00 | 0.00 | 38.00 | 3.51 |
3966 | 6950 | 2.566279 | AGATGACATATCTGCAGCGGAT | 59.434 | 45.455 | 20.77 | 20.77 | 33.63 | 4.18 |
4393 | 9343 | 2.027605 | CACGACAGTGGACGCACT | 59.972 | 61.111 | 10.91 | 0.00 | 44.34 | 4.40 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
2 | 3 | 8.237949 | GCTTAAGGAAAGTCTGGTTTATTTCTC | 58.762 | 37.037 | 4.29 | 0.00 | 37.53 | 2.87 |
3 | 4 | 7.724061 | TGCTTAAGGAAAGTCTGGTTTATTTCT | 59.276 | 33.333 | 4.29 | 0.00 | 37.53 | 2.52 |
4 | 5 | 7.808381 | GTGCTTAAGGAAAGTCTGGTTTATTTC | 59.192 | 37.037 | 4.29 | 0.00 | 37.53 | 2.17 |
5 | 6 | 7.521585 | CGTGCTTAAGGAAAGTCTGGTTTATTT | 60.522 | 37.037 | 4.29 | 0.00 | 37.53 | 1.40 |
6 | 7 | 6.072673 | CGTGCTTAAGGAAAGTCTGGTTTATT | 60.073 | 38.462 | 4.29 | 0.00 | 37.53 | 1.40 |
7 | 8 | 5.411669 | CGTGCTTAAGGAAAGTCTGGTTTAT | 59.588 | 40.000 | 4.29 | 0.00 | 37.53 | 1.40 |
8 | 9 | 4.753107 | CGTGCTTAAGGAAAGTCTGGTTTA | 59.247 | 41.667 | 4.29 | 0.00 | 37.53 | 2.01 |
9 | 10 | 3.564225 | CGTGCTTAAGGAAAGTCTGGTTT | 59.436 | 43.478 | 4.29 | 0.00 | 37.53 | 3.27 |
10 | 11 | 3.139077 | CGTGCTTAAGGAAAGTCTGGTT | 58.861 | 45.455 | 4.29 | 0.00 | 37.53 | 3.67 |
11 | 12 | 2.550208 | CCGTGCTTAAGGAAAGTCTGGT | 60.550 | 50.000 | 4.29 | 0.00 | 37.53 | 4.00 |
12 | 13 | 2.076863 | CCGTGCTTAAGGAAAGTCTGG | 58.923 | 52.381 | 4.29 | 0.00 | 37.53 | 3.86 |
13 | 14 | 2.076863 | CCCGTGCTTAAGGAAAGTCTG | 58.923 | 52.381 | 4.29 | 0.00 | 37.53 | 3.51 |
14 | 15 | 1.697982 | ACCCGTGCTTAAGGAAAGTCT | 59.302 | 47.619 | 4.29 | 0.00 | 37.53 | 3.24 |
15 | 16 | 1.804748 | CACCCGTGCTTAAGGAAAGTC | 59.195 | 52.381 | 4.29 | 0.00 | 37.53 | 3.01 |
16 | 17 | 1.892209 | CACCCGTGCTTAAGGAAAGT | 58.108 | 50.000 | 4.29 | 0.00 | 37.53 | 2.66 |
28 | 29 | 2.418628 | CCTGTACAAATAAGCACCCGTG | 59.581 | 50.000 | 0.00 | 0.00 | 0.00 | 4.94 |
29 | 30 | 2.303600 | TCCTGTACAAATAAGCACCCGT | 59.696 | 45.455 | 0.00 | 0.00 | 0.00 | 5.28 |
30 | 31 | 2.980568 | TCCTGTACAAATAAGCACCCG | 58.019 | 47.619 | 0.00 | 0.00 | 0.00 | 5.28 |
31 | 32 | 5.758784 | GTCTATCCTGTACAAATAAGCACCC | 59.241 | 44.000 | 0.00 | 0.00 | 0.00 | 4.61 |
32 | 33 | 5.462398 | CGTCTATCCTGTACAAATAAGCACC | 59.538 | 44.000 | 0.00 | 0.00 | 0.00 | 5.01 |
33 | 34 | 5.050972 | GCGTCTATCCTGTACAAATAAGCAC | 60.051 | 44.000 | 0.00 | 0.00 | 0.00 | 4.40 |
34 | 35 | 5.047847 | GCGTCTATCCTGTACAAATAAGCA | 58.952 | 41.667 | 0.00 | 0.00 | 0.00 | 3.91 |
35 | 36 | 5.290386 | AGCGTCTATCCTGTACAAATAAGC | 58.710 | 41.667 | 0.00 | 4.79 | 0.00 | 3.09 |
36 | 37 | 8.753175 | GTTAAGCGTCTATCCTGTACAAATAAG | 58.247 | 37.037 | 0.00 | 0.00 | 0.00 | 1.73 |
37 | 38 | 8.472413 | AGTTAAGCGTCTATCCTGTACAAATAA | 58.528 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
38 | 39 | 8.004087 | AGTTAAGCGTCTATCCTGTACAAATA | 57.996 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
39 | 40 | 6.875076 | AGTTAAGCGTCTATCCTGTACAAAT | 58.125 | 36.000 | 0.00 | 0.00 | 0.00 | 2.32 |
40 | 41 | 6.276832 | AGTTAAGCGTCTATCCTGTACAAA | 57.723 | 37.500 | 0.00 | 0.00 | 0.00 | 2.83 |
41 | 42 | 5.909621 | AGTTAAGCGTCTATCCTGTACAA | 57.090 | 39.130 | 0.00 | 0.00 | 0.00 | 2.41 |
42 | 43 | 6.600822 | ACTTAGTTAAGCGTCTATCCTGTACA | 59.399 | 38.462 | 0.00 | 0.00 | 36.79 | 2.90 |
43 | 44 | 6.911511 | CACTTAGTTAAGCGTCTATCCTGTAC | 59.088 | 42.308 | 0.00 | 0.00 | 36.79 | 2.90 |
44 | 45 | 6.600822 | ACACTTAGTTAAGCGTCTATCCTGTA | 59.399 | 38.462 | 0.00 | 0.00 | 36.79 | 2.74 |
45 | 46 | 5.418209 | ACACTTAGTTAAGCGTCTATCCTGT | 59.582 | 40.000 | 0.00 | 0.00 | 36.79 | 4.00 |
46 | 47 | 5.892568 | ACACTTAGTTAAGCGTCTATCCTG | 58.107 | 41.667 | 0.00 | 0.00 | 36.79 | 3.86 |
47 | 48 | 6.134040 | GACACTTAGTTAAGCGTCTATCCT | 57.866 | 41.667 | 11.07 | 0.00 | 40.42 | 3.24 |
53 | 54 | 4.413969 | GGAGAGACACTTAGTTAAGCGTC | 58.586 | 47.826 | 10.57 | 10.57 | 42.62 | 5.19 |
54 | 55 | 3.193056 | GGGAGAGACACTTAGTTAAGCGT | 59.807 | 47.826 | 0.00 | 0.00 | 36.79 | 5.07 |
55 | 56 | 3.731264 | CGGGAGAGACACTTAGTTAAGCG | 60.731 | 52.174 | 0.00 | 0.00 | 36.79 | 4.68 |
56 | 57 | 3.193056 | ACGGGAGAGACACTTAGTTAAGC | 59.807 | 47.826 | 0.00 | 0.00 | 36.79 | 3.09 |
57 | 58 | 5.879223 | TCTACGGGAGAGACACTTAGTTAAG | 59.121 | 44.000 | 0.00 | 0.00 | 39.18 | 1.85 |
58 | 59 | 5.809001 | TCTACGGGAGAGACACTTAGTTAA | 58.191 | 41.667 | 0.00 | 0.00 | 0.00 | 2.01 |
59 | 60 | 5.426689 | TCTACGGGAGAGACACTTAGTTA | 57.573 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
60 | 61 | 4.298103 | TCTACGGGAGAGACACTTAGTT | 57.702 | 45.455 | 0.00 | 0.00 | 0.00 | 2.24 |
61 | 62 | 3.996921 | TCTACGGGAGAGACACTTAGT | 57.003 | 47.619 | 0.00 | 0.00 | 0.00 | 2.24 |
62 | 63 | 5.838531 | ATTTCTACGGGAGAGACACTTAG | 57.161 | 43.478 | 0.00 | 0.00 | 34.93 | 2.18 |
63 | 64 | 5.826737 | CCTATTTCTACGGGAGAGACACTTA | 59.173 | 44.000 | 0.00 | 0.00 | 34.93 | 2.24 |
64 | 65 | 4.645588 | CCTATTTCTACGGGAGAGACACTT | 59.354 | 45.833 | 0.00 | 0.00 | 34.93 | 3.16 |
65 | 66 | 4.208746 | CCTATTTCTACGGGAGAGACACT | 58.791 | 47.826 | 0.00 | 0.00 | 34.93 | 3.55 |
66 | 67 | 3.243468 | GCCTATTTCTACGGGAGAGACAC | 60.243 | 52.174 | 0.00 | 0.00 | 34.93 | 3.67 |
67 | 68 | 2.957006 | GCCTATTTCTACGGGAGAGACA | 59.043 | 50.000 | 0.00 | 0.00 | 34.93 | 3.41 |
68 | 69 | 2.957006 | TGCCTATTTCTACGGGAGAGAC | 59.043 | 50.000 | 0.00 | 0.00 | 34.93 | 3.36 |
69 | 70 | 2.957006 | GTGCCTATTTCTACGGGAGAGA | 59.043 | 50.000 | 0.00 | 0.00 | 34.93 | 3.10 |
70 | 71 | 2.036089 | GGTGCCTATTTCTACGGGAGAG | 59.964 | 54.545 | 0.00 | 0.00 | 34.93 | 3.20 |
71 | 72 | 2.037144 | GGTGCCTATTTCTACGGGAGA | 58.963 | 52.381 | 0.00 | 0.00 | 0.00 | 3.71 |
72 | 73 | 1.269621 | CGGTGCCTATTTCTACGGGAG | 60.270 | 57.143 | 0.00 | 0.00 | 0.00 | 4.30 |
73 | 74 | 0.748450 | CGGTGCCTATTTCTACGGGA | 59.252 | 55.000 | 0.00 | 0.00 | 0.00 | 5.14 |
74 | 75 | 0.249741 | CCGGTGCCTATTTCTACGGG | 60.250 | 60.000 | 0.00 | 0.00 | 36.45 | 5.28 |
75 | 76 | 0.462789 | ACCGGTGCCTATTTCTACGG | 59.537 | 55.000 | 6.12 | 0.00 | 44.86 | 4.02 |
76 | 77 | 1.567504 | CACCGGTGCCTATTTCTACG | 58.432 | 55.000 | 24.02 | 0.00 | 0.00 | 3.51 |
88 | 89 | 0.310854 | GTTTTCCTGAAGCACCGGTG | 59.689 | 55.000 | 30.66 | 30.66 | 0.00 | 4.94 |
89 | 90 | 0.182775 | AGTTTTCCTGAAGCACCGGT | 59.817 | 50.000 | 0.00 | 0.00 | 0.00 | 5.28 |
90 | 91 | 0.875059 | GAGTTTTCCTGAAGCACCGG | 59.125 | 55.000 | 0.00 | 0.00 | 0.00 | 5.28 |
91 | 92 | 0.512952 | CGAGTTTTCCTGAAGCACCG | 59.487 | 55.000 | 0.00 | 0.00 | 0.00 | 4.94 |
92 | 93 | 0.875059 | CCGAGTTTTCCTGAAGCACC | 59.125 | 55.000 | 0.00 | 0.00 | 0.00 | 5.01 |
93 | 94 | 1.594331 | ACCGAGTTTTCCTGAAGCAC | 58.406 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
94 | 95 | 2.341846 | AACCGAGTTTTCCTGAAGCA | 57.658 | 45.000 | 0.00 | 0.00 | 0.00 | 3.91 |
95 | 96 | 5.372547 | AATAAACCGAGTTTTCCTGAAGC | 57.627 | 39.130 | 7.22 | 0.00 | 37.01 | 3.86 |
96 | 97 | 8.135529 | AGAAAAATAAACCGAGTTTTCCTGAAG | 58.864 | 33.333 | 7.22 | 0.00 | 41.85 | 3.02 |
97 | 98 | 8.002984 | AGAAAAATAAACCGAGTTTTCCTGAA | 57.997 | 30.769 | 7.22 | 0.00 | 41.85 | 3.02 |
98 | 99 | 7.576861 | AGAAAAATAAACCGAGTTTTCCTGA | 57.423 | 32.000 | 7.22 | 0.00 | 41.85 | 3.86 |
99 | 100 | 9.738832 | TTTAGAAAAATAAACCGAGTTTTCCTG | 57.261 | 29.630 | 7.22 | 0.00 | 41.85 | 3.86 |
100 | 101 | 9.740239 | GTTTAGAAAAATAAACCGAGTTTTCCT | 57.260 | 29.630 | 7.22 | 0.00 | 41.85 | 3.36 |
101 | 102 | 9.518906 | TGTTTAGAAAAATAAACCGAGTTTTCC | 57.481 | 29.630 | 7.22 | 0.00 | 41.85 | 3.13 |
103 | 104 | 9.304731 | GGTGTTTAGAAAAATAAACCGAGTTTT | 57.695 | 29.630 | 7.22 | 0.00 | 42.45 | 2.43 |
104 | 105 | 8.689061 | AGGTGTTTAGAAAAATAAACCGAGTTT | 58.311 | 29.630 | 6.84 | 7.11 | 42.45 | 2.66 |
105 | 106 | 8.229253 | AGGTGTTTAGAAAAATAAACCGAGTT | 57.771 | 30.769 | 6.84 | 0.00 | 42.45 | 3.01 |
106 | 107 | 7.718314 | AGAGGTGTTTAGAAAAATAAACCGAGT | 59.282 | 33.333 | 6.84 | 0.00 | 42.45 | 4.18 |
107 | 108 | 8.095937 | AGAGGTGTTTAGAAAAATAAACCGAG | 57.904 | 34.615 | 6.84 | 0.00 | 42.45 | 4.63 |
108 | 109 | 7.935210 | AGAGAGGTGTTTAGAAAAATAAACCGA | 59.065 | 33.333 | 6.84 | 0.00 | 42.45 | 4.69 |
109 | 110 | 8.095937 | AGAGAGGTGTTTAGAAAAATAAACCG | 57.904 | 34.615 | 6.84 | 0.00 | 42.45 | 4.44 |
113 | 114 | 9.787435 | TGCTTAGAGAGGTGTTTAGAAAAATAA | 57.213 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
114 | 115 | 9.216117 | GTGCTTAGAGAGGTGTTTAGAAAAATA | 57.784 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
115 | 116 | 7.175119 | GGTGCTTAGAGAGGTGTTTAGAAAAAT | 59.825 | 37.037 | 0.00 | 0.00 | 0.00 | 1.82 |
116 | 117 | 6.485648 | GGTGCTTAGAGAGGTGTTTAGAAAAA | 59.514 | 38.462 | 0.00 | 0.00 | 0.00 | 1.94 |
117 | 118 | 5.995897 | GGTGCTTAGAGAGGTGTTTAGAAAA | 59.004 | 40.000 | 0.00 | 0.00 | 0.00 | 2.29 |
118 | 119 | 5.307196 | AGGTGCTTAGAGAGGTGTTTAGAAA | 59.693 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
119 | 120 | 4.838986 | AGGTGCTTAGAGAGGTGTTTAGAA | 59.161 | 41.667 | 0.00 | 0.00 | 0.00 | 2.10 |
120 | 121 | 4.417437 | AGGTGCTTAGAGAGGTGTTTAGA | 58.583 | 43.478 | 0.00 | 0.00 | 0.00 | 2.10 |
121 | 122 | 4.382147 | GGAGGTGCTTAGAGAGGTGTTTAG | 60.382 | 50.000 | 0.00 | 0.00 | 0.00 | 1.85 |
122 | 123 | 3.514309 | GGAGGTGCTTAGAGAGGTGTTTA | 59.486 | 47.826 | 0.00 | 0.00 | 0.00 | 2.01 |
123 | 124 | 2.303311 | GGAGGTGCTTAGAGAGGTGTTT | 59.697 | 50.000 | 0.00 | 0.00 | 0.00 | 2.83 |
124 | 125 | 1.903183 | GGAGGTGCTTAGAGAGGTGTT | 59.097 | 52.381 | 0.00 | 0.00 | 0.00 | 3.32 |
125 | 126 | 1.562783 | GGAGGTGCTTAGAGAGGTGT | 58.437 | 55.000 | 0.00 | 0.00 | 0.00 | 4.16 |
126 | 127 | 0.827368 | GGGAGGTGCTTAGAGAGGTG | 59.173 | 60.000 | 0.00 | 0.00 | 0.00 | 4.00 |
127 | 128 | 0.413832 | TGGGAGGTGCTTAGAGAGGT | 59.586 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
128 | 129 | 1.799933 | ATGGGAGGTGCTTAGAGAGG | 58.200 | 55.000 | 0.00 | 0.00 | 0.00 | 3.69 |
129 | 130 | 2.503356 | ACAATGGGAGGTGCTTAGAGAG | 59.497 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
130 | 131 | 2.551270 | ACAATGGGAGGTGCTTAGAGA | 58.449 | 47.619 | 0.00 | 0.00 | 0.00 | 3.10 |
131 | 132 | 3.197766 | TGTACAATGGGAGGTGCTTAGAG | 59.802 | 47.826 | 0.00 | 0.00 | 0.00 | 2.43 |
132 | 133 | 3.178046 | TGTACAATGGGAGGTGCTTAGA | 58.822 | 45.455 | 0.00 | 0.00 | 0.00 | 2.10 |
133 | 134 | 3.627395 | TGTACAATGGGAGGTGCTTAG | 57.373 | 47.619 | 0.00 | 0.00 | 0.00 | 2.18 |
134 | 135 | 3.308117 | CCTTGTACAATGGGAGGTGCTTA | 60.308 | 47.826 | 9.13 | 0.00 | 0.00 | 3.09 |
135 | 136 | 2.555227 | CCTTGTACAATGGGAGGTGCTT | 60.555 | 50.000 | 9.13 | 0.00 | 0.00 | 3.91 |
136 | 137 | 1.004745 | CCTTGTACAATGGGAGGTGCT | 59.995 | 52.381 | 9.13 | 0.00 | 0.00 | 4.40 |
137 | 138 | 1.463674 | CCTTGTACAATGGGAGGTGC | 58.536 | 55.000 | 9.13 | 0.00 | 0.00 | 5.01 |
138 | 139 | 1.463674 | GCCTTGTACAATGGGAGGTG | 58.536 | 55.000 | 16.08 | 0.00 | 0.00 | 4.00 |
139 | 140 | 0.331616 | GGCCTTGTACAATGGGAGGT | 59.668 | 55.000 | 16.08 | 0.00 | 0.00 | 3.85 |
140 | 141 | 0.748005 | CGGCCTTGTACAATGGGAGG | 60.748 | 60.000 | 16.08 | 11.34 | 0.00 | 4.30 |
141 | 142 | 0.748005 | CCGGCCTTGTACAATGGGAG | 60.748 | 60.000 | 16.08 | 9.45 | 0.00 | 4.30 |
142 | 143 | 1.301623 | CCGGCCTTGTACAATGGGA | 59.698 | 57.895 | 16.08 | 0.00 | 0.00 | 4.37 |
143 | 144 | 1.752694 | CCCGGCCTTGTACAATGGG | 60.753 | 63.158 | 19.36 | 17.88 | 0.00 | 4.00 |
144 | 145 | 0.610785 | AACCCGGCCTTGTACAATGG | 60.611 | 55.000 | 9.13 | 13.26 | 0.00 | 3.16 |
145 | 146 | 0.525761 | CAACCCGGCCTTGTACAATG | 59.474 | 55.000 | 9.13 | 7.68 | 0.00 | 2.82 |
146 | 147 | 0.111639 | ACAACCCGGCCTTGTACAAT | 59.888 | 50.000 | 9.13 | 0.00 | 29.81 | 2.71 |
147 | 148 | 0.106619 | AACAACCCGGCCTTGTACAA | 60.107 | 50.000 | 14.27 | 8.28 | 31.43 | 2.41 |
148 | 149 | 0.763652 | TAACAACCCGGCCTTGTACA | 59.236 | 50.000 | 14.27 | 0.00 | 31.43 | 2.90 |
149 | 150 | 1.894881 | TTAACAACCCGGCCTTGTAC | 58.105 | 50.000 | 14.27 | 0.00 | 31.43 | 2.90 |
150 | 151 | 2.438411 | CATTAACAACCCGGCCTTGTA | 58.562 | 47.619 | 14.27 | 3.01 | 31.43 | 2.41 |
151 | 152 | 1.253100 | CATTAACAACCCGGCCTTGT | 58.747 | 50.000 | 9.38 | 9.38 | 33.09 | 3.16 |
152 | 153 | 0.108851 | GCATTAACAACCCGGCCTTG | 60.109 | 55.000 | 0.00 | 0.55 | 0.00 | 3.61 |
153 | 154 | 1.254975 | GGCATTAACAACCCGGCCTT | 61.255 | 55.000 | 0.00 | 0.00 | 38.37 | 4.35 |
154 | 155 | 1.680989 | GGCATTAACAACCCGGCCT | 60.681 | 57.895 | 0.00 | 0.00 | 38.37 | 5.19 |
155 | 156 | 2.717044 | GGGCATTAACAACCCGGCC | 61.717 | 63.158 | 0.00 | 0.00 | 40.63 | 6.13 |
156 | 157 | 2.889617 | GGGCATTAACAACCCGGC | 59.110 | 61.111 | 0.00 | 0.00 | 32.92 | 6.13 |
163 | 164 | 5.188555 | TGAGGCAATAAAATGGGCATTAACA | 59.811 | 36.000 | 0.00 | 0.00 | 0.00 | 2.41 |
185 | 186 | 1.403814 | CTCCTCGTATCCCTGCTTGA | 58.596 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
259 | 260 | 0.462581 | TGCTCATTGGATGACGAGGC | 60.463 | 55.000 | 0.00 | 0.00 | 35.06 | 4.70 |
273 | 274 | 0.251033 | ACAAGATGCCTGCTTGCTCA | 60.251 | 50.000 | 9.40 | 0.00 | 45.00 | 4.26 |
382 | 383 | 1.334869 | GGCCGAGCTTGATTTGTATGG | 59.665 | 52.381 | 1.22 | 0.00 | 0.00 | 2.74 |
402 | 403 | 2.055042 | CGGAGACAGTGAGGGAGGG | 61.055 | 68.421 | 0.00 | 0.00 | 0.00 | 4.30 |
434 | 435 | 1.585006 | CTGCAGGCAGCTGGAAAAG | 59.415 | 57.895 | 17.12 | 0.00 | 45.94 | 2.27 |
529 | 530 | 8.452534 | TGGGACAAACATGATAAAAACGTATAC | 58.547 | 33.333 | 0.00 | 0.00 | 31.92 | 1.47 |
537 | 538 | 5.479724 | TGCATCTGGGACAAACATGATAAAA | 59.520 | 36.000 | 0.00 | 0.00 | 38.70 | 1.52 |
538 | 539 | 5.015515 | TGCATCTGGGACAAACATGATAAA | 58.984 | 37.500 | 0.00 | 0.00 | 38.70 | 1.40 |
561 | 562 | 3.784763 | ACTGATTCATGAAGTGGGATCCT | 59.215 | 43.478 | 14.54 | 0.00 | 0.00 | 3.24 |
688 | 697 | 1.402259 | CACAACTACCAACAACGCCAA | 59.598 | 47.619 | 0.00 | 0.00 | 0.00 | 4.52 |
691 | 700 | 1.018910 | ACCACAACTACCAACAACGC | 58.981 | 50.000 | 0.00 | 0.00 | 0.00 | 4.84 |
692 | 701 | 3.768468 | AAACCACAACTACCAACAACG | 57.232 | 42.857 | 0.00 | 0.00 | 0.00 | 4.10 |
743 | 766 | 7.981225 | ACGGTACAAAACGGATATACTAACATT | 59.019 | 33.333 | 0.00 | 0.00 | 32.91 | 2.71 |
752 | 775 | 3.781079 | TCGACGGTACAAAACGGATAT | 57.219 | 42.857 | 0.00 | 0.00 | 32.91 | 1.63 |
830 | 978 | 7.663905 | CCTATTTTATTCCCATCATTACCGACA | 59.336 | 37.037 | 0.00 | 0.00 | 0.00 | 4.35 |
833 | 981 | 7.663905 | TGTCCTATTTTATTCCCATCATTACCG | 59.336 | 37.037 | 0.00 | 0.00 | 0.00 | 4.02 |
857 | 1005 | 3.760684 | GCAGGACCAATCAAAGATTCTGT | 59.239 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
891 | 1039 | 8.460317 | AAGGTGGATATTCATATTCAGAGGAT | 57.540 | 34.615 | 0.00 | 0.00 | 29.13 | 3.24 |
954 | 1110 | 0.036952 | TGCTACTGCTTGTCTGCCTC | 60.037 | 55.000 | 0.00 | 0.00 | 40.48 | 4.70 |
972 | 1128 | 4.244425 | TCTTCTTCGTCCTTCTGACTTG | 57.756 | 45.455 | 0.00 | 0.00 | 42.13 | 3.16 |
973 | 1129 | 4.797933 | GCTTCTTCTTCGTCCTTCTGACTT | 60.798 | 45.833 | 0.00 | 0.00 | 42.13 | 3.01 |
1006 | 1162 | 4.022849 | CCTCCAATTCACAAAGACTCCAAC | 60.023 | 45.833 | 0.00 | 0.00 | 0.00 | 3.77 |
1223 | 1382 | 2.678836 | CCACGTTTGTTACCACAGTCAA | 59.321 | 45.455 | 0.00 | 0.00 | 33.22 | 3.18 |
1335 | 1494 | 3.814268 | CGGATGTGGCGCCAAAGG | 61.814 | 66.667 | 34.66 | 15.93 | 0.00 | 3.11 |
1572 | 3853 | 7.138081 | TGATAAAGCCGCATATGTTTAACATG | 58.862 | 34.615 | 19.55 | 7.51 | 39.53 | 3.21 |
1747 | 4414 | 4.944962 | TTTACATCAGAATTGCGGACAG | 57.055 | 40.909 | 0.00 | 0.00 | 0.00 | 3.51 |
1752 | 4419 | 7.579589 | TTTGGAAATTTACATCAGAATTGCG | 57.420 | 32.000 | 3.35 | 0.00 | 0.00 | 4.85 |
1917 | 4584 | 7.167136 | GCTTATGGTTTGTGTCGAGTATAGTAC | 59.833 | 40.741 | 0.00 | 0.00 | 0.00 | 2.73 |
1922 | 4593 | 4.189231 | GGCTTATGGTTTGTGTCGAGTAT | 58.811 | 43.478 | 0.00 | 0.00 | 0.00 | 2.12 |
1925 | 4596 | 2.422597 | TGGCTTATGGTTTGTGTCGAG | 58.577 | 47.619 | 0.00 | 0.00 | 0.00 | 4.04 |
1927 | 4598 | 4.955925 | TTATGGCTTATGGTTTGTGTCG | 57.044 | 40.909 | 0.00 | 0.00 | 0.00 | 4.35 |
1944 | 4615 | 8.925161 | ATTTCGTACACCCAAAATTGATTATG | 57.075 | 30.769 | 0.00 | 0.00 | 0.00 | 1.90 |
1946 | 4617 | 8.361139 | ACAATTTCGTACACCCAAAATTGATTA | 58.639 | 29.630 | 20.21 | 0.00 | 45.39 | 1.75 |
2011 | 4682 | 3.809279 | GCTAAAGGCACATTGCTGTTTTT | 59.191 | 39.130 | 0.00 | 0.00 | 44.28 | 1.94 |
2039 | 4710 | 4.517453 | AGTTTTAAGTTTCAGCATACCGCA | 59.483 | 37.500 | 0.00 | 0.00 | 46.13 | 5.69 |
2099 | 4771 | 5.589192 | AGTATGTACTGTATCTTTCGCACC | 58.411 | 41.667 | 0.00 | 0.00 | 34.72 | 5.01 |
2128 | 4838 | 5.010282 | AGTGGGTTTCATTGTCAAGGATAC | 58.990 | 41.667 | 11.04 | 11.04 | 0.00 | 2.24 |
2157 | 4868 | 0.804933 | AAGTCCTCGTTTATCGGCGC | 60.805 | 55.000 | 0.00 | 0.00 | 40.32 | 6.53 |
2315 | 5228 | 1.122227 | CAATATTGCAAGGGGGTGGG | 58.878 | 55.000 | 4.94 | 0.00 | 0.00 | 4.61 |
2423 | 5336 | 2.218759 | CGGCAAGCAAGATCGTATACAC | 59.781 | 50.000 | 3.32 | 0.00 | 0.00 | 2.90 |
2432 | 5345 | 0.962356 | CAAGGGACGGCAAGCAAGAT | 60.962 | 55.000 | 0.00 | 0.00 | 0.00 | 2.40 |
2988 | 5951 | 6.434340 | AGTTAGGGAATGGATTCTCAAAACAC | 59.566 | 38.462 | 14.82 | 1.69 | 39.75 | 3.32 |
3024 | 5994 | 0.379669 | CGAGAAATCTGGCACCATGC | 59.620 | 55.000 | 0.00 | 0.00 | 44.08 | 4.06 |
3442 | 6419 | 2.513204 | CATCTGCACCTCAGCCCG | 60.513 | 66.667 | 0.00 | 0.00 | 42.56 | 6.13 |
3528 | 6505 | 3.243569 | CCTCACTGTTGAAGAACTCGAGT | 60.244 | 47.826 | 13.58 | 13.58 | 32.79 | 4.18 |
3573 | 6550 | 3.649277 | CTAGAACAGCGCCGTGGCT | 62.649 | 63.158 | 2.29 | 4.05 | 46.13 | 4.75 |
3590 | 6567 | 3.023949 | GCGAGCCCCAGATCACACT | 62.024 | 63.158 | 0.00 | 0.00 | 0.00 | 3.55 |
3684 | 6662 | 1.867233 | ACTAGTGTTCAAGCTTGCACG | 59.133 | 47.619 | 21.99 | 14.06 | 36.99 | 5.34 |
3746 | 6724 | 0.896226 | GGTAGTTGAGGAAGCCGAGT | 59.104 | 55.000 | 0.00 | 0.00 | 0.00 | 4.18 |
3820 | 6798 | 2.127271 | ATCATGATCAACCGTTGGCA | 57.873 | 45.000 | 11.35 | 10.14 | 0.00 | 4.92 |
3836 | 6814 | 7.094506 | GCATATCTGATATGTCAAGGCAAATCA | 60.095 | 37.037 | 28.87 | 0.00 | 43.52 | 2.57 |
3841 | 6819 | 5.231702 | TGCATATCTGATATGTCAAGGCA | 57.768 | 39.130 | 28.87 | 20.39 | 43.52 | 4.75 |
3888 | 6872 | 7.782168 | AGACATAGTGAATCAGACATCCTTCTA | 59.218 | 37.037 | 0.00 | 0.00 | 0.00 | 2.10 |
3917 | 6901 | 5.462398 | GTCGTGACAACAGACTTGACTAATT | 59.538 | 40.000 | 0.00 | 0.00 | 31.43 | 1.40 |
3932 | 6916 | 1.068434 | TGTCATCTGCAGTCGTGACAA | 59.932 | 47.619 | 30.91 | 21.45 | 45.50 | 3.18 |
4393 | 9343 | 4.289672 | AGAAGCAGGAGGGTATTTTTCTCA | 59.710 | 41.667 | 0.00 | 0.00 | 0.00 | 3.27 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.