Multiple sequence alignment - TraesCS5A01G055500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G055500 chr5A 100.000 2462 0 0 1 2462 51884213 51881752 0.000000e+00 4547.0
1 TraesCS5A01G055500 chr5A 82.207 1894 196 76 634 2443 52174147 52172311 0.000000e+00 1500.0
2 TraesCS5A01G055500 chr5A 84.081 936 104 24 1533 2443 52175585 52174670 0.000000e+00 861.0
3 TraesCS5A01G055500 chr5A 92.693 479 31 1 476 950 52179378 52178900 0.000000e+00 688.0
4 TraesCS5A01G055500 chr5A 90.455 440 26 9 985 1411 52178191 52177755 1.280000e-157 566.0
5 TraesCS5A01G055500 chr5A 90.026 381 32 4 72 451 52210128 52209753 2.850000e-134 488.0
6 TraesCS5A01G055500 chr5A 80.637 377 45 16 998 1356 51748390 51748024 1.450000e-67 267.0
7 TraesCS5A01G055500 chr5A 80.217 369 43 18 999 1347 52006551 52006193 1.460000e-62 250.0
8 TraesCS5A01G055500 chr5A 84.390 205 31 1 723 926 51792766 51792562 1.490000e-47 200.0
9 TraesCS5A01G055500 chr5A 75.349 215 31 16 501 703 52172008 52171804 1.570000e-12 84.2
10 TraesCS5A01G055500 chr5D 90.676 1480 98 14 982 2427 62140326 62138853 0.000000e+00 1932.0
11 TraesCS5A01G055500 chr5D 84.570 1536 160 38 959 2443 61843394 61841885 0.000000e+00 1452.0
12 TraesCS5A01G055500 chr5D 91.176 816 57 9 71 879 61864473 61863666 0.000000e+00 1094.0
13 TraesCS5A01G055500 chr5D 91.599 619 43 5 72 690 62142940 62142331 0.000000e+00 846.0
14 TraesCS5A01G055500 chr5D 93.333 270 16 1 722 989 62140618 62140349 4.930000e-107 398.0
15 TraesCS5A01G055500 chr5D 81.383 376 42 18 999 1353 62131721 62131353 5.180000e-72 281.0
16 TraesCS5A01G055500 chr5D 81.564 358 48 10 999 1345 61838293 61837943 1.860000e-71 279.0
17 TraesCS5A01G055500 chr5D 78.989 376 55 14 998 1357 61814032 61813665 4.090000e-58 235.0
18 TraesCS5A01G055500 chr5D 77.410 332 41 17 643 946 61838770 61838445 1.510000e-37 167.0
19 TraesCS5A01G055500 chr5B 82.403 932 103 28 1533 2443 68366611 68367502 0.000000e+00 756.0
20 TraesCS5A01G055500 chr5B 89.060 521 37 9 868 1374 68365788 68366302 1.610000e-176 628.0
21 TraesCS5A01G055500 chr5B 89.541 392 22 10 501 879 68363134 68363519 1.710000e-131 479.0
22 TraesCS5A01G055500 chrUn 76.652 681 105 31 723 1357 65980140 65979468 6.560000e-86 327.0
23 TraesCS5A01G055500 chrUn 78.307 378 52 17 998 1353 337950360 337950729 1.480000e-52 217.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G055500 chr5A 51881752 51884213 2461 True 4547.000000 4547 100.000000 1 2462 1 chr5A.!!$R3 2461
1 TraesCS5A01G055500 chr5A 52171804 52179378 7574 True 739.840000 1500 84.957000 476 2443 5 chr5A.!!$R6 1967
2 TraesCS5A01G055500 chr5D 61863666 61864473 807 True 1094.000000 1094 91.176000 71 879 1 chr5D.!!$R2 808
3 TraesCS5A01G055500 chr5D 62138853 62142940 4087 True 1058.666667 1932 91.869333 72 2427 3 chr5D.!!$R5 2355
4 TraesCS5A01G055500 chr5D 61837943 61843394 5451 True 632.666667 1452 81.181333 643 2443 3 chr5D.!!$R4 1800
5 TraesCS5A01G055500 chr5B 68363134 68367502 4368 False 621.000000 756 87.001333 501 2443 3 chr5B.!!$F1 1942
6 TraesCS5A01G055500 chrUn 65979468 65980140 672 True 327.000000 327 76.652000 723 1357 1 chrUn.!!$R1 634

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
941 10006 1.410882 GTGCTGGAGTCCTACTCATCC 59.589 57.143 11.33 0.0 46.79 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2398 16833 1.973281 CCGCAAAGCATCCACCACT 60.973 57.895 0.0 0.0 0.0 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.749841 TTATACACACATACAAACATTTTGCC 57.250 30.769 0.00 0.00 0.00 4.52
26 27 4.047822 ACACACATACAAACATTTTGCCG 58.952 39.130 0.00 0.00 0.00 5.69
27 28 3.056304 ACACATACAAACATTTTGCCGC 58.944 40.909 0.00 0.00 0.00 6.53
28 29 3.055591 CACATACAAACATTTTGCCGCA 58.944 40.909 0.00 0.00 0.00 5.69
29 30 3.492383 CACATACAAACATTTTGCCGCAA 59.508 39.130 0.38 0.38 0.00 4.85
30 31 4.025396 CACATACAAACATTTTGCCGCAAA 60.025 37.500 14.60 14.60 0.00 3.68
31 32 4.572389 ACATACAAACATTTTGCCGCAAAA 59.428 33.333 28.51 28.51 45.41 2.44
32 33 5.065218 ACATACAAACATTTTGCCGCAAAAA 59.935 32.000 29.65 15.28 44.68 1.94
33 34 4.013582 ACAAACATTTTGCCGCAAAAAG 57.986 36.364 29.65 27.12 44.68 2.27
34 35 3.686726 ACAAACATTTTGCCGCAAAAAGA 59.313 34.783 30.40 14.25 44.68 2.52
35 36 4.154918 ACAAACATTTTGCCGCAAAAAGAA 59.845 33.333 30.40 13.93 44.68 2.52
36 37 5.163673 ACAAACATTTTGCCGCAAAAAGAAT 60.164 32.000 30.40 19.51 44.68 2.40
37 38 6.037610 ACAAACATTTTGCCGCAAAAAGAATA 59.962 30.769 30.40 12.98 44.68 1.75
38 39 6.610741 AACATTTTGCCGCAAAAAGAATAA 57.389 29.167 30.40 12.35 44.68 1.40
39 40 6.799926 ACATTTTGCCGCAAAAAGAATAAT 57.200 29.167 30.40 14.44 44.68 1.28
40 41 7.200778 ACATTTTGCCGCAAAAAGAATAATT 57.799 28.000 30.40 13.83 44.68 1.40
41 42 7.647228 ACATTTTGCCGCAAAAAGAATAATTT 58.353 26.923 30.40 13.24 44.68 1.82
42 43 7.590689 ACATTTTGCCGCAAAAAGAATAATTTG 59.409 29.630 30.40 22.89 44.68 2.32
43 44 6.610741 TTTGCCGCAAAAAGAATAATTTGT 57.389 29.167 16.17 0.00 38.48 2.83
44 45 7.715265 TTTGCCGCAAAAAGAATAATTTGTA 57.285 28.000 16.17 0.00 38.48 2.41
45 46 7.897575 TTGCCGCAAAAAGAATAATTTGTAT 57.102 28.000 2.50 0.00 38.48 2.29
46 47 8.988064 TTGCCGCAAAAAGAATAATTTGTATA 57.012 26.923 2.50 0.00 38.48 1.47
47 48 8.401046 TGCCGCAAAAAGAATAATTTGTATAC 57.599 30.769 0.00 0.00 38.48 1.47
48 49 8.029522 TGCCGCAAAAAGAATAATTTGTATACA 58.970 29.630 0.08 0.08 38.48 2.29
49 50 8.318167 GCCGCAAAAAGAATAATTTGTATACAC 58.682 33.333 4.68 0.00 38.48 2.90
50 51 9.347934 CCGCAAAAAGAATAATTTGTATACACA 57.652 29.630 4.68 0.00 38.48 3.72
65 66 7.384358 TGTATACACATATTTTGCTACGACG 57.616 36.000 0.08 0.00 0.00 5.12
66 67 6.974048 TGTATACACATATTTTGCTACGACGT 59.026 34.615 5.52 5.52 0.00 4.34
67 68 6.897259 ATACACATATTTTGCTACGACGTT 57.103 33.333 5.50 0.00 0.00 3.99
68 69 4.953269 ACACATATTTTGCTACGACGTTG 58.047 39.130 5.50 5.22 0.00 4.10
69 70 4.449743 ACACATATTTTGCTACGACGTTGT 59.550 37.500 14.07 14.07 0.00 3.32
108 109 9.562408 TTGTGATGTACAAGGAAATTTACTACA 57.438 29.630 2.56 5.15 44.07 2.74
186 187 8.930846 AGGAAATCCATACAATCAGAATTAGG 57.069 34.615 1.67 0.00 38.89 2.69
196 197 1.570501 TCAGAATTAGGGGGCTGCAAT 59.429 47.619 0.50 0.00 0.00 3.56
197 198 1.684983 CAGAATTAGGGGGCTGCAATG 59.315 52.381 0.50 0.00 0.00 2.82
262 263 2.351350 CGGATTTGTAAGTTGGGCACAC 60.351 50.000 0.00 0.00 0.00 3.82
263 264 2.029380 GGATTTGTAAGTTGGGCACACC 60.029 50.000 0.00 0.00 40.81 4.16
312 313 9.900710 AACGAAATAACTGTAATATGCAACAAA 57.099 25.926 0.00 0.00 0.00 2.83
346 350 7.787725 AGTTCAGAAACGACTTTATTTGACT 57.212 32.000 0.00 0.00 40.48 3.41
351 355 9.622004 TCAGAAACGACTTTATTTGACTACTAG 57.378 33.333 0.00 0.00 0.00 2.57
752 2444 2.103263 GGTCGAGATTTGTCCAGCCTAT 59.897 50.000 0.00 0.00 0.00 2.57
759 2451 6.521151 AGATTTGTCCAGCCTATTTTCAAG 57.479 37.500 0.00 0.00 0.00 3.02
787 2479 6.395629 CGAGTACCTACCAAAATCTGAAGAA 58.604 40.000 0.00 0.00 0.00 2.52
870 4842 4.520492 AGTTTTAAGGACAGACAATGCAGG 59.480 41.667 0.00 0.00 0.00 4.85
906 9971 3.594775 TTGCACTGCCACGCAAGG 61.595 61.111 0.00 0.00 42.93 3.61
941 10006 1.410882 GTGCTGGAGTCCTACTCATCC 59.589 57.143 11.33 0.00 46.79 3.51
994 10120 5.128991 AGTCAGCACCCTAGTAATCTTAACC 59.871 44.000 0.00 0.00 0.00 2.85
996 10122 3.129109 GCACCCTAGTAATCTTAACCGC 58.871 50.000 0.00 0.00 0.00 5.68
1023 10149 5.805486 CCTATAAATAGACGCACGTATGCAT 59.195 40.000 3.79 3.79 41.26 3.96
1077 10207 5.076873 AGCCTTCATCCTTCTACTAGCTAG 58.923 45.833 19.44 19.44 0.00 3.42
1173 15556 1.729470 GATCAGCGAGGAGGCTTCGA 61.729 60.000 12.50 0.00 42.53 3.71
1187 15570 3.259930 TCGACAGCGACGATGACA 58.740 55.556 21.46 2.00 42.51 3.58
1190 15573 1.213013 GACAGCGACGATGACAGGT 59.787 57.895 21.46 0.00 0.00 4.00
1213 15596 1.032794 TCGATGACCGGAGAAGATGG 58.967 55.000 9.46 0.00 39.14 3.51
1233 15622 6.608808 AGATGGGAAGGAGAATTTTATTGGTG 59.391 38.462 0.00 0.00 0.00 4.17
1255 15644 1.554617 AGAGGAGAAGAAGGCAGCTTC 59.445 52.381 10.30 10.30 41.53 3.86
1411 15803 6.157211 CGAGTATATATTCTGGGGTTGTGAC 58.843 44.000 0.00 0.00 0.00 3.67
1413 15805 7.471539 CGAGTATATATTCTGGGGTTGTGACTT 60.472 40.741 0.00 0.00 0.00 3.01
1416 15808 2.051334 TTCTGGGGTTGTGACTTGTG 57.949 50.000 0.00 0.00 0.00 3.33
1417 15809 1.208706 TCTGGGGTTGTGACTTGTGA 58.791 50.000 0.00 0.00 0.00 3.58
1419 15811 2.154462 CTGGGGTTGTGACTTGTGATC 58.846 52.381 0.00 0.00 0.00 2.92
1420 15812 1.156736 GGGGTTGTGACTTGTGATCG 58.843 55.000 0.00 0.00 0.00 3.69
1426 15818 4.547532 GTTGTGACTTGTGATCGAGTAGT 58.452 43.478 0.00 0.00 38.31 2.73
1429 15821 5.001874 TGTGACTTGTGATCGAGTAGTAGT 58.998 41.667 0.00 0.00 38.31 2.73
1431 15823 6.091849 TGTGACTTGTGATCGAGTAGTAGTAC 59.908 42.308 0.00 0.00 38.31 2.73
1432 15824 6.313411 GTGACTTGTGATCGAGTAGTAGTACT 59.687 42.308 10.09 10.09 42.59 2.73
1459 15851 7.985184 AGTATTTTGTTTTGAACTTTCCTTCCC 59.015 33.333 0.00 0.00 0.00 3.97
1475 15886 9.304335 CTTTCCTTCCCCAATAAAGTTAAGTTA 57.696 33.333 0.00 0.00 0.00 2.24
1496 15907 1.134907 GTTAAGTCGAAGGATCCGCCA 60.135 52.381 5.98 0.00 40.02 5.69
1504 15915 0.179073 AAGGATCCGCCATCGAACAG 60.179 55.000 5.98 0.00 40.02 3.16
1526 15937 7.064866 ACAGGATCCATGATTTGTGTAATGAT 58.935 34.615 15.82 0.00 0.00 2.45
1570 15982 6.976349 CACTTTGAAACCTGGTTTAGTTTACC 59.024 38.462 23.89 10.78 35.77 2.85
1574 15986 7.102847 TGAAACCTGGTTTAGTTTACCAAAG 57.897 36.000 23.89 0.00 44.63 2.77
1577 15989 7.721409 AACCTGGTTTAGTTTACCAAAGAAA 57.279 32.000 6.18 0.00 44.63 2.52
1616 16029 4.337264 ACCTTGGGAGCCTAATTCATTT 57.663 40.909 0.00 0.00 0.00 2.32
1617 16030 4.026052 ACCTTGGGAGCCTAATTCATTTG 58.974 43.478 0.00 0.00 0.00 2.32
1726 16143 1.020437 TGCAATGTGCTCGTGAAACA 58.980 45.000 1.43 0.00 45.31 2.83
1908 16337 8.798153 GTCGAAATTGCTGTAAAATTTATCTGG 58.202 33.333 0.00 0.00 37.35 3.86
1910 16339 9.013490 CGAAATTGCTGTAAAATTTATCTGGAG 57.987 33.333 0.00 0.00 37.35 3.86
1964 16396 6.935771 AGATATGAATTGCAACTGAGATCTCC 59.064 38.462 20.03 4.69 0.00 3.71
2116 16548 5.501156 ACCTGAAATGGTTCTAGAATGGAC 58.499 41.667 8.75 0.00 36.89 4.02
2167 16599 9.847224 ATGAAGTCCGAAAATATAGTAATGGTT 57.153 29.630 0.00 0.00 0.00 3.67
2295 16728 7.260603 ACTGTTGGTTTTGAAAATCTCAAGAG 58.739 34.615 17.66 17.66 44.84 2.85
2398 16833 5.163723 GGTTCAAATCTCGAAGCATCAATCA 60.164 40.000 0.00 0.00 39.94 2.57
2446 16881 3.982058 GTGCGCACACTTCTATATACTCC 59.018 47.826 34.52 0.80 43.85 3.85
2447 16882 3.235195 GCGCACACTTCTATATACTCCG 58.765 50.000 0.30 0.00 0.00 4.63
2450 16885 5.391736 GCGCACACTTCTATATACTCCGTAT 60.392 44.000 0.30 0.00 33.05 3.06
2451 16886 6.249359 CGCACACTTCTATATACTCCGTATC 58.751 44.000 0.00 0.00 30.79 2.24
2453 16888 7.572539 CGCACACTTCTATATACTCCGTATCAA 60.573 40.741 0.00 0.00 30.79 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.539022 CGGCAAAATGTTTGTATGTGTGTATAA 59.461 33.333 2.92 0.00 0.00 0.98
3 4 5.215903 CGGCAAAATGTTTGTATGTGTGTA 58.784 37.500 2.92 0.00 0.00 2.90
4 5 4.047822 CGGCAAAATGTTTGTATGTGTGT 58.952 39.130 2.92 0.00 0.00 3.72
5 6 3.121058 GCGGCAAAATGTTTGTATGTGTG 60.121 43.478 0.00 0.00 0.00 3.82
7 8 3.055591 TGCGGCAAAATGTTTGTATGTG 58.944 40.909 0.00 0.00 0.00 3.21
8 9 3.377346 TGCGGCAAAATGTTTGTATGT 57.623 38.095 0.00 0.00 0.00 2.29
9 10 4.722203 TTTGCGGCAAAATGTTTGTATG 57.278 36.364 24.63 0.00 29.89 2.39
10 11 5.525378 TCTTTTTGCGGCAAAATGTTTGTAT 59.475 32.000 33.89 0.00 41.89 2.29
11 12 4.870426 TCTTTTTGCGGCAAAATGTTTGTA 59.130 33.333 33.89 21.89 41.89 2.41
12 13 3.686726 TCTTTTTGCGGCAAAATGTTTGT 59.313 34.783 33.89 0.00 41.89 2.83
13 14 4.270178 TCTTTTTGCGGCAAAATGTTTG 57.730 36.364 33.89 23.84 41.89 2.93
14 15 4.954092 TTCTTTTTGCGGCAAAATGTTT 57.046 31.818 33.89 0.00 41.89 2.83
15 16 6.610741 TTATTCTTTTTGCGGCAAAATGTT 57.389 29.167 33.89 27.68 41.89 2.71
16 17 6.799926 ATTATTCTTTTTGCGGCAAAATGT 57.200 29.167 33.89 25.16 41.89 2.71
17 18 7.590689 ACAAATTATTCTTTTTGCGGCAAAATG 59.409 29.630 33.65 32.69 41.89 2.32
18 19 7.647228 ACAAATTATTCTTTTTGCGGCAAAAT 58.353 26.923 33.65 23.64 41.89 1.82
19 20 7.020914 ACAAATTATTCTTTTTGCGGCAAAA 57.979 28.000 30.89 30.89 40.85 2.44
20 21 6.610741 ACAAATTATTCTTTTTGCGGCAAA 57.389 29.167 23.23 23.23 36.51 3.68
21 22 7.897575 ATACAAATTATTCTTTTTGCGGCAA 57.102 28.000 12.11 12.11 36.51 4.52
22 23 8.029522 TGTATACAAATTATTCTTTTTGCGGCA 58.970 29.630 2.20 0.00 36.51 5.69
23 24 8.318167 GTGTATACAAATTATTCTTTTTGCGGC 58.682 33.333 7.25 0.00 36.51 6.53
24 25 9.347934 TGTGTATACAAATTATTCTTTTTGCGG 57.652 29.630 7.25 0.00 36.51 5.69
39 40 8.322428 CGTCGTAGCAAAATATGTGTATACAAA 58.678 33.333 7.25 1.80 40.84 2.83
40 41 7.488792 ACGTCGTAGCAAAATATGTGTATACAA 59.511 33.333 7.25 0.00 40.84 2.41
41 42 6.974048 ACGTCGTAGCAAAATATGTGTATACA 59.026 34.615 0.08 0.08 41.89 2.29
42 43 7.385668 ACGTCGTAGCAAAATATGTGTATAC 57.614 36.000 0.00 0.00 0.00 1.47
43 44 7.488792 ACAACGTCGTAGCAAAATATGTGTATA 59.511 33.333 0.00 0.00 0.00 1.47
44 45 6.311935 ACAACGTCGTAGCAAAATATGTGTAT 59.688 34.615 0.00 0.00 0.00 2.29
45 46 5.634439 ACAACGTCGTAGCAAAATATGTGTA 59.366 36.000 0.00 0.00 0.00 2.90
46 47 4.449743 ACAACGTCGTAGCAAAATATGTGT 59.550 37.500 0.00 0.00 0.00 3.72
47 48 4.953269 ACAACGTCGTAGCAAAATATGTG 58.047 39.130 0.00 0.00 0.00 3.21
48 49 5.600908 AACAACGTCGTAGCAAAATATGT 57.399 34.783 0.00 0.00 0.00 2.29
49 50 9.691795 TTAATAACAACGTCGTAGCAAAATATG 57.308 29.630 0.00 0.00 0.00 1.78
105 106 1.349688 ACCTCTGCAAAACGGGATGTA 59.650 47.619 0.00 0.00 0.00 2.29
106 107 0.110486 ACCTCTGCAAAACGGGATGT 59.890 50.000 0.00 0.00 0.00 3.06
108 109 1.679032 GCTACCTCTGCAAAACGGGAT 60.679 52.381 0.00 0.00 0.00 3.85
312 313 7.316544 AGTCGTTTCTGAACTTACATGTTTT 57.683 32.000 2.30 0.00 33.51 2.43
316 317 9.878599 AAATAAAGTCGTTTCTGAACTTACATG 57.121 29.630 0.00 0.00 33.51 3.21
318 319 9.100554 TCAAATAAAGTCGTTTCTGAACTTACA 57.899 29.630 0.00 0.00 33.51 2.41
319 320 9.366513 GTCAAATAAAGTCGTTTCTGAACTTAC 57.633 33.333 0.00 0.00 33.51 2.34
403 407 0.180406 ACAAGCCGGACACAACTCTT 59.820 50.000 5.05 0.00 0.00 2.85
405 409 1.873698 TTACAAGCCGGACACAACTC 58.126 50.000 5.05 0.00 0.00 3.01
466 470 4.918583 CCTTCGTGTGAACTCTCTCTAAAC 59.081 45.833 0.00 0.00 0.00 2.01
471 475 1.000163 TGCCTTCGTGTGAACTCTCTC 60.000 52.381 0.00 0.00 0.00 3.20
759 2451 2.460757 TTTTGGTAGGTACTCGCACC 57.539 50.000 0.00 0.00 41.75 5.01
870 4842 0.745845 ATCCGCACCATGCTTCACTC 60.746 55.000 0.00 0.00 42.25 3.51
1023 10149 5.554437 TGTGATAGTTGGAAGGTTGTGTA 57.446 39.130 0.00 0.00 0.00 2.90
1077 10207 0.450983 GCCATGTTGAGCAGAGAAGC 59.549 55.000 0.00 0.00 0.00 3.86
1173 15556 0.885879 TTACCTGTCATCGTCGCTGT 59.114 50.000 0.00 0.00 0.00 4.40
1187 15570 1.064906 TCTCCGGTCATCGACTTACCT 60.065 52.381 0.00 0.00 42.43 3.08
1190 15573 2.995283 TCTTCTCCGGTCATCGACTTA 58.005 47.619 0.00 0.00 42.43 2.24
1213 15596 7.148000 CCTCTTCACCAATAAAATTCTCCTTCC 60.148 40.741 0.00 0.00 0.00 3.46
1233 15622 1.554617 AGCTGCCTTCTTCTCCTCTTC 59.445 52.381 0.00 0.00 0.00 2.87
1411 15803 9.695526 ATACTAGTACTACTACTCGATCACAAG 57.304 37.037 4.31 0.00 34.79 3.16
1442 15834 7.126573 ACTTTATTGGGGAAGGAAAGTTCAAAA 59.873 33.333 0.00 0.00 37.09 2.44
1475 15886 1.136500 GGCGGATCCTTCGACTTAACT 59.864 52.381 10.75 0.00 32.06 2.24
1484 15895 0.179084 TGTTCGATGGCGGATCCTTC 60.179 55.000 10.75 2.09 38.28 3.46
1496 15907 4.577693 CACAAATCATGGATCCTGTTCGAT 59.422 41.667 14.23 4.87 0.00 3.59
1504 15915 6.266103 ACCATCATTACACAAATCATGGATCC 59.734 38.462 4.20 4.20 34.55 3.36
1596 16008 4.280819 TCAAATGAATTAGGCTCCCAAGG 58.719 43.478 0.00 0.00 0.00 3.61
1597 16009 5.361857 ACATCAAATGAATTAGGCTCCCAAG 59.638 40.000 0.00 0.00 0.00 3.61
1616 16029 7.170151 CAGTGCAATTTCAGAAATTTGACATCA 59.830 33.333 17.12 7.16 38.97 3.07
1617 16030 7.507304 CAGTGCAATTTCAGAAATTTGACATC 58.493 34.615 17.12 10.74 38.97 3.06
1688 16105 8.530311 ACATTGCAACATGTTTTCATCCTATTA 58.470 29.630 8.77 0.00 38.64 0.98
1693 16110 4.377635 GCACATTGCAACATGTTTTCATCC 60.378 41.667 8.77 0.00 44.26 3.51
1862 16290 7.401484 TCGACAACTTTTAATTGCATTTTCC 57.599 32.000 0.00 0.00 0.00 3.13
1879 16308 9.937577 GATAAATTTTACAGCAATTTCGACAAC 57.062 29.630 0.00 0.00 35.78 3.32
1882 16311 8.798153 CCAGATAAATTTTACAGCAATTTCGAC 58.202 33.333 0.00 0.00 35.78 4.20
1883 16312 8.735315 TCCAGATAAATTTTACAGCAATTTCGA 58.265 29.630 0.00 0.00 35.78 3.71
1884 16313 8.909708 TCCAGATAAATTTTACAGCAATTTCG 57.090 30.769 0.00 0.00 35.78 3.46
2116 16548 3.879295 ACAAGTCAGACCAACTTCACATG 59.121 43.478 0.00 0.00 34.79 3.21
2167 16599 9.926158 ATGTCAAATGCATTTCACTAACAATTA 57.074 25.926 24.01 4.64 0.00 1.40
2170 16602 8.549548 CAAATGTCAAATGCATTTCACTAACAA 58.450 29.630 24.01 6.68 42.54 2.83
2336 16771 7.327761 GCTCAAGAGTTCTTACGTGTATTTGTA 59.672 37.037 0.00 0.00 34.28 2.41
2345 16780 2.812591 TCGAGCTCAAGAGTTCTTACGT 59.187 45.455 15.40 0.00 36.65 3.57
2354 16789 4.499183 ACCTACATTTTCGAGCTCAAGAG 58.501 43.478 15.40 0.00 0.00 2.85
2398 16833 1.973281 CCGCAAAGCATCCACCACT 60.973 57.895 0.00 0.00 0.00 4.00
2427 16862 4.485024 ACGGAGTATATAGAAGTGTGCG 57.515 45.455 0.00 0.00 41.94 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.