Multiple sequence alignment - TraesCS5A01G055400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G055400 chr5A 100.000 2249 0 0 1 2249 51810819 51808571 0.000000e+00 4154.0
1 TraesCS5A01G055400 chr5A 85.849 848 57 19 486 1291 52006980 52006154 0.000000e+00 843.0
2 TraesCS5A01G055400 chr5A 88.648 599 56 8 1637 2223 52005998 52005400 0.000000e+00 719.0
3 TraesCS5A01G055400 chr5A 89.497 457 42 6 1 455 52042067 52041615 6.970000e-160 573.0
4 TraesCS5A01G055400 chr5A 84.516 465 43 16 888 1344 51792459 51792016 1.230000e-117 433.0
5 TraesCS5A01G055400 chr5A 85.507 138 20 0 1392 1529 567724179 567724042 6.470000e-31 145.0
6 TraesCS5A01G055400 chr5D 86.960 1342 96 27 2 1288 62132640 62131323 0.000000e+00 1435.0
7 TraesCS5A01G055400 chr5D 86.887 999 58 22 444 1393 61838776 61837802 0.000000e+00 1051.0
8 TraesCS5A01G055400 chr5D 88.815 599 54 8 1637 2224 62131173 62130577 0.000000e+00 723.0
9 TraesCS5A01G055400 chr5D 94.196 448 20 4 1 446 61839380 61838937 0.000000e+00 678.0
10 TraesCS5A01G055400 chr5D 91.333 450 35 4 1 446 62134771 62134322 1.480000e-171 612.0
11 TraesCS5A01G055400 chr5D 90.451 377 34 2 1841 2215 93604928 93604552 1.550000e-136 496.0
12 TraesCS5A01G055400 chr5D 88.920 352 36 3 444 793 62134219 62133869 4.440000e-117 431.0
13 TraesCS5A01G055400 chr5D 88.780 205 22 1 1870 2074 61837167 61836964 1.330000e-62 250.0
14 TraesCS5A01G055400 chr5D 92.405 158 11 1 1637 1793 61837803 61837646 8.080000e-55 224.0
15 TraesCS5A01G055400 chr5D 84.753 223 26 3 574 788 62136628 62136406 1.350000e-52 217.0
16 TraesCS5A01G055400 chr5D 78.356 365 49 10 453 788 61841403 61841040 2.260000e-50 209.0
17 TraesCS5A01G055400 chr5D 95.604 91 3 1 1436 1526 196857570 196857659 6.470000e-31 145.0
18 TraesCS5A01G055400 chr5D 90.476 105 8 2 1439 1542 447627021 447626918 1.080000e-28 137.0
19 TraesCS5A01G055400 chr5D 73.401 297 58 17 1843 2123 232457670 232457379 8.550000e-15 91.6
20 TraesCS5A01G055400 chr5D 93.478 46 0 3 689 732 61792776 61792732 5.180000e-07 65.8
21 TraesCS5A01G055400 chr5B 85.586 1228 97 30 116 1290 68370432 68371632 0.000000e+00 1214.0
22 TraesCS5A01G055400 chr5B 89.987 799 75 5 3 797 68409899 68410696 0.000000e+00 1027.0
23 TraesCS5A01G055400 chr5B 87.799 418 40 4 1637 2045 68371781 68372196 1.560000e-131 479.0
24 TraesCS5A01G055400 chr5B 83.573 347 46 6 453 788 68380899 68381245 4.660000e-82 315.0
25 TraesCS5A01G055400 chr5B 82.051 234 30 7 606 828 68368115 68368347 2.950000e-44 189.0
26 TraesCS5A01G055400 chr5B 88.608 79 5 2 816 894 68416171 68416245 2.380000e-15 93.5
27 TraesCS5A01G055400 chrUn 83.084 467 47 18 888 1344 65979835 65979391 1.620000e-106 396.0
28 TraesCS5A01G055400 chrUn 83.292 401 51 15 993 1383 337950454 337950848 2.750000e-94 355.0
29 TraesCS5A01G055400 chrUn 83.417 398 50 15 996 1383 337959280 337958889 2.750000e-94 355.0
30 TraesCS5A01G055400 chrUn 83.292 401 51 15 993 1383 427501253 427501647 2.750000e-94 355.0
31 TraesCS5A01G055400 chrUn 76.490 302 29 22 447 735 65969409 65969137 2.340000e-25 126.0
32 TraesCS5A01G055400 chrUn 91.379 58 5 0 1377 1434 27075860 27075917 1.850000e-11 80.5
33 TraesCS5A01G055400 chr7D 77.068 532 74 25 1755 2243 426171931 426171405 1.710000e-66 263.0
34 TraesCS5A01G055400 chr7D 87.156 109 6 6 1442 1548 82866958 82866856 1.410000e-22 117.0
35 TraesCS5A01G055400 chr2A 75.655 534 99 22 1737 2249 447003224 447003747 1.040000e-58 237.0
36 TraesCS5A01G055400 chr2A 88.136 118 11 3 1520 1636 709883561 709883446 1.080000e-28 137.0
37 TraesCS5A01G055400 chr2D 76.535 456 76 22 1814 2249 336734280 336734724 1.050000e-53 220.0
38 TraesCS5A01G055400 chr2D 94.737 95 3 2 1433 1527 341665853 341665945 1.800000e-31 147.0
39 TraesCS5A01G055400 chr2D 92.929 99 4 3 1433 1530 378043185 378043089 8.370000e-30 141.0
40 TraesCS5A01G055400 chr2D 91.089 101 9 0 1429 1529 15192979 15192879 1.080000e-28 137.0
41 TraesCS5A01G055400 chr2D 96.429 56 2 0 1389 1444 498472994 498473049 2.380000e-15 93.5
42 TraesCS5A01G055400 chr2D 92.857 56 4 0 1389 1444 43687447 43687502 5.150000e-12 82.4
43 TraesCS5A01G055400 chr1B 79.583 240 39 7 1391 1626 664973125 664973358 1.790000e-36 163.0
44 TraesCS5A01G055400 chr1B 88.696 115 11 2 1525 1638 334894555 334894668 3.010000e-29 139.0
45 TraesCS5A01G055400 chr1B 90.164 61 6 0 1384 1444 507308983 507309043 1.850000e-11 80.5
46 TraesCS5A01G055400 chr1B 89.062 64 7 0 1930 1993 584667158 584667221 1.850000e-11 80.5
47 TraesCS5A01G055400 chr3A 79.268 246 40 10 1392 1630 750297091 750297332 6.430000e-36 161.0
48 TraesCS5A01G055400 chr7A 94.737 95 5 0 1432 1526 728022264 728022358 5.000000e-32 148.0
49 TraesCS5A01G055400 chr7A 87.705 122 12 2 1519 1637 436885633 436885512 3.010000e-29 139.0
50 TraesCS5A01G055400 chr7B 90.090 111 9 2 1528 1637 431659205 431659096 2.330000e-30 143.0
51 TraesCS5A01G055400 chr7B 88.235 119 12 2 1521 1638 583372899 583373016 8.370000e-30 141.0
52 TraesCS5A01G055400 chr6B 89.381 113 10 2 1525 1636 489430738 489430849 8.370000e-30 141.0
53 TraesCS5A01G055400 chr2B 89.189 111 11 1 1521 1630 63129178 63129288 1.080000e-28 137.0
54 TraesCS5A01G055400 chr2B 80.892 157 24 6 1842 1996 471439361 471439513 3.920000e-23 119.0
55 TraesCS5A01G055400 chr2B 96.429 56 2 0 1389 1444 585712491 585712546 2.380000e-15 93.5
56 TraesCS5A01G055400 chr3D 84.685 111 14 3 1442 1551 6459382 6459490 8.490000e-20 108.0
57 TraesCS5A01G055400 chr1D 90.164 61 5 1 1377 1436 457538987 457538927 6.660000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G055400 chr5A 51808571 51810819 2248 True 4154.000000 4154 100.000000 1 2249 1 chr5A.!!$R2 2248
1 TraesCS5A01G055400 chr5A 52005400 52006980 1580 True 781.000000 843 87.248500 486 2223 2 chr5A.!!$R5 1737
2 TraesCS5A01G055400 chr5D 62130577 62136628 6051 True 683.600000 1435 88.156200 1 2224 5 chr5D.!!$R6 2223
3 TraesCS5A01G055400 chr5D 61836964 61841403 4439 True 482.400000 1051 88.124800 1 2074 5 chr5D.!!$R5 2073
4 TraesCS5A01G055400 chr5B 68409899 68410696 797 False 1027.000000 1027 89.987000 3 797 1 chr5B.!!$F2 794
5 TraesCS5A01G055400 chr5B 68368115 68372196 4081 False 627.333333 1214 85.145333 116 2045 3 chr5B.!!$F4 1929
6 TraesCS5A01G055400 chr7D 426171405 426171931 526 True 263.000000 263 77.068000 1755 2243 1 chr7D.!!$R2 488
7 TraesCS5A01G055400 chr2A 447003224 447003747 523 False 237.000000 237 75.655000 1737 2249 1 chr2A.!!$F1 512

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
115 116 0.102844 TTTGCTGCAAACAGGAGTGC 59.897 50.0 22.84 0.0 45.77 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1677 6439 0.035739 TTTCAGTTAGGCCCGTGGTC 59.964 55.0 0.0 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.695993 TGGTCATCCGCGCTGCAA 62.696 61.111 5.56 0.00 36.30 4.08
25 26 1.744741 TCATCCGCGCTGCAAATCA 60.745 52.632 5.56 0.00 0.00 2.57
26 27 1.298116 CATCCGCGCTGCAAATCAG 60.298 57.895 5.56 0.00 45.62 2.90
29 30 2.276244 CGCGCTGCAAATCAGTCG 60.276 61.111 5.56 0.00 44.66 4.18
30 31 2.863153 GCGCTGCAAATCAGTCGT 59.137 55.556 0.00 0.00 44.66 4.34
31 32 1.225854 GCGCTGCAAATCAGTCGTC 60.226 57.895 0.00 0.00 44.66 4.20
32 33 1.630244 GCGCTGCAAATCAGTCGTCT 61.630 55.000 0.00 0.00 44.66 4.18
33 34 0.792640 CGCTGCAAATCAGTCGTCTT 59.207 50.000 0.00 0.00 44.66 3.01
34 35 1.195448 CGCTGCAAATCAGTCGTCTTT 59.805 47.619 0.00 0.00 44.66 2.52
36 37 3.632189 GCTGCAAATCAGTCGTCTTTTT 58.368 40.909 0.00 0.00 44.66 1.94
37 38 3.423206 GCTGCAAATCAGTCGTCTTTTTG 59.577 43.478 0.00 9.19 44.66 2.44
38 39 3.371168 TGCAAATCAGTCGTCTTTTTGC 58.629 40.909 21.99 21.99 43.28 3.68
39 40 2.401720 GCAAATCAGTCGTCTTTTTGCG 59.598 45.455 17.58 0.00 38.85 4.85
41 42 2.949714 ATCAGTCGTCTTTTTGCGTG 57.050 45.000 0.00 0.00 0.00 5.34
42 43 1.929230 TCAGTCGTCTTTTTGCGTGA 58.071 45.000 0.00 0.00 0.00 4.35
44 45 2.869801 TCAGTCGTCTTTTTGCGTGAAT 59.130 40.909 0.00 0.00 0.00 2.57
45 46 3.059868 TCAGTCGTCTTTTTGCGTGAATC 60.060 43.478 0.00 0.00 0.00 2.52
46 47 2.869801 AGTCGTCTTTTTGCGTGAATCA 59.130 40.909 0.00 0.00 0.00 2.57
47 48 3.059597 AGTCGTCTTTTTGCGTGAATCAG 60.060 43.478 0.00 0.00 0.00 2.90
48 49 3.059868 GTCGTCTTTTTGCGTGAATCAGA 60.060 43.478 0.00 0.00 0.00 3.27
49 50 3.184379 TCGTCTTTTTGCGTGAATCAGAG 59.816 43.478 0.00 0.00 0.00 3.35
50 51 3.059597 CGTCTTTTTGCGTGAATCAGAGT 60.060 43.478 0.00 0.00 0.00 3.24
51 52 4.214437 GTCTTTTTGCGTGAATCAGAGTG 58.786 43.478 0.00 0.00 0.00 3.51
53 54 0.512518 TTTGCGTGAATCAGAGTGCG 59.487 50.000 0.00 0.00 0.00 5.34
54 55 1.900585 TTGCGTGAATCAGAGTGCGC 61.901 55.000 0.00 0.00 44.29 6.09
55 56 2.382746 GCGTGAATCAGAGTGCGCA 61.383 57.895 5.66 5.66 43.62 6.09
56 57 1.706301 CGTGAATCAGAGTGCGCAG 59.294 57.895 12.22 0.00 0.00 5.18
60 61 0.390340 GAATCAGAGTGCGCAGACCA 60.390 55.000 12.22 0.00 0.00 4.02
61 62 0.671781 AATCAGAGTGCGCAGACCAC 60.672 55.000 12.22 0.00 0.00 4.16
63 64 3.233980 AGAGTGCGCAGACCACCA 61.234 61.111 12.22 0.00 33.75 4.17
64 65 3.044305 GAGTGCGCAGACCACCAC 61.044 66.667 12.22 0.00 33.75 4.16
66 67 2.669569 GTGCGCAGACCACCACAT 60.670 61.111 12.22 0.00 0.00 3.21
67 68 2.669229 TGCGCAGACCACCACATG 60.669 61.111 5.66 0.00 0.00 3.21
71 72 1.601759 GCAGACCACCACATGCTGT 60.602 57.895 0.00 0.00 35.78 4.40
72 73 1.580845 GCAGACCACCACATGCTGTC 61.581 60.000 0.00 0.00 35.78 3.51
73 74 0.250424 CAGACCACCACATGCTGTCA 60.250 55.000 0.00 0.00 0.00 3.58
74 75 0.250467 AGACCACCACATGCTGTCAC 60.250 55.000 0.00 0.00 0.00 3.67
75 76 0.534877 GACCACCACATGCTGTCACA 60.535 55.000 0.00 0.00 0.00 3.58
77 78 0.806868 CCACCACATGCTGTCACATC 59.193 55.000 0.00 0.00 0.00 3.06
78 79 1.612462 CCACCACATGCTGTCACATCT 60.612 52.381 0.00 0.00 0.00 2.90
79 80 1.467342 CACCACATGCTGTCACATCTG 59.533 52.381 0.00 0.00 0.00 2.90
80 81 0.450583 CCACATGCTGTCACATCTGC 59.549 55.000 0.00 0.00 0.00 4.26
81 82 0.450583 CACATGCTGTCACATCTGCC 59.549 55.000 0.00 0.00 0.00 4.85
82 83 1.022982 ACATGCTGTCACATCTGCCG 61.023 55.000 0.00 0.00 0.00 5.69
83 84 1.022982 CATGCTGTCACATCTGCCGT 61.023 55.000 0.00 0.00 0.00 5.68
84 85 1.022982 ATGCTGTCACATCTGCCGTG 61.023 55.000 0.00 0.00 35.63 4.94
87 88 3.490759 GTCACATCTGCCGTGGCG 61.491 66.667 6.37 1.46 45.51 5.69
100 101 4.283403 TGGCGCAACCAGCTTTGC 62.283 61.111 10.83 12.26 46.36 3.68
111 112 2.811307 AGCTTTGCTGCAAACAGGA 58.189 47.368 22.84 3.62 44.63 3.86
112 113 0.672342 AGCTTTGCTGCAAACAGGAG 59.328 50.000 22.84 14.22 45.77 3.69
114 115 1.866880 GCTTTGCTGCAAACAGGAGTG 60.867 52.381 22.84 12.78 45.77 3.51
115 116 0.102844 TTTGCTGCAAACAGGAGTGC 59.897 50.000 22.84 0.00 45.77 4.40
116 117 1.036481 TTGCTGCAAACAGGAGTGCA 61.036 50.000 13.51 0.00 45.77 4.57
298 4765 0.821517 AATGATCCGACGGCTACACA 59.178 50.000 9.66 4.99 0.00 3.72
304 4771 0.108804 CCGACGGCTACACAAGACAT 60.109 55.000 0.00 0.00 29.38 3.06
400 4867 5.581085 GTGTGCGACTAATTTAATCAGAGGT 59.419 40.000 0.00 0.00 0.00 3.85
470 5100 4.905429 TGATGTAGTGCACTATTGTGGTT 58.095 39.130 28.37 9.32 43.97 3.67
505 5135 1.264288 GGTGAACTTCCAAAGTGCGAG 59.736 52.381 0.00 0.00 41.91 5.03
517 5147 2.086054 AGTGCGAGAACCTGCTAAAG 57.914 50.000 0.00 0.00 0.00 1.85
566 5196 7.646526 TCGTTACATTAGTGGTCGATATTTCTG 59.353 37.037 0.00 0.00 0.00 3.02
662 5294 1.135333 GGAGTCGGAGAGATGTCCAAC 59.865 57.143 0.00 0.00 36.95 3.77
760 5393 1.968540 GGTGCTGTGCTGGAGTTCC 60.969 63.158 0.00 0.00 0.00 3.62
768 5401 1.002430 GTGCTGGAGTTCCACTCATCA 59.998 52.381 6.25 0.00 46.79 3.07
823 5488 1.608590 CCCGGTTTGCATATGATCCAC 59.391 52.381 6.97 0.00 0.00 4.02
831 5496 4.787135 TGCATATGATCCACCTAAACCA 57.213 40.909 6.97 0.00 0.00 3.67
842 5507 2.814336 CACCTAAACCAGCAAAGGAGAC 59.186 50.000 0.00 0.00 33.16 3.36
843 5508 2.076863 CCTAAACCAGCAAAGGAGACG 58.923 52.381 0.00 0.00 0.00 4.18
844 5509 2.550208 CCTAAACCAGCAAAGGAGACGT 60.550 50.000 0.00 0.00 0.00 4.34
845 5510 2.922740 AAACCAGCAAAGGAGACGTA 57.077 45.000 0.00 0.00 0.00 3.57
846 5511 2.165319 AACCAGCAAAGGAGACGTAC 57.835 50.000 0.00 0.00 0.00 3.67
902 5590 1.435577 CGCCCCTATAAATACACGCC 58.564 55.000 0.00 0.00 0.00 5.68
925 5613 0.685785 ATGCACACACCAACACCCAA 60.686 50.000 0.00 0.00 0.00 4.12
926 5614 1.140804 GCACACACCAACACCCAAC 59.859 57.895 0.00 0.00 0.00 3.77
927 5615 1.813192 CACACACCAACACCCAACC 59.187 57.895 0.00 0.00 0.00 3.77
928 5616 0.967887 CACACACCAACACCCAACCA 60.968 55.000 0.00 0.00 0.00 3.67
929 5617 0.682855 ACACACCAACACCCAACCAG 60.683 55.000 0.00 0.00 0.00 4.00
930 5618 0.395036 CACACCAACACCCAACCAGA 60.395 55.000 0.00 0.00 0.00 3.86
950 5638 2.146342 ACACATCAACTCAAGCCTTCG 58.854 47.619 0.00 0.00 0.00 3.79
954 5642 2.440539 TCAACTCAAGCCTTCGTCTC 57.559 50.000 0.00 0.00 0.00 3.36
971 5659 3.064820 CGTCTCTCTAGCCAACTTCTCTC 59.935 52.174 0.00 0.00 0.00 3.20
972 5660 4.270008 GTCTCTCTAGCCAACTTCTCTCT 58.730 47.826 0.00 0.00 0.00 3.10
973 5661 4.705023 GTCTCTCTAGCCAACTTCTCTCTT 59.295 45.833 0.00 0.00 0.00 2.85
974 5662 5.883673 GTCTCTCTAGCCAACTTCTCTCTTA 59.116 44.000 0.00 0.00 0.00 2.10
975 5663 6.376018 GTCTCTCTAGCCAACTTCTCTCTTAA 59.624 42.308 0.00 0.00 0.00 1.85
976 5664 7.068226 GTCTCTCTAGCCAACTTCTCTCTTAAT 59.932 40.741 0.00 0.00 0.00 1.40
977 5665 7.617723 TCTCTCTAGCCAACTTCTCTCTTAATT 59.382 37.037 0.00 0.00 0.00 1.40
978 5666 8.824756 TCTCTAGCCAACTTCTCTCTTAATTA 57.175 34.615 0.00 0.00 0.00 1.40
979 5667 8.688151 TCTCTAGCCAACTTCTCTCTTAATTAC 58.312 37.037 0.00 0.00 0.00 1.89
980 5668 8.362464 TCTAGCCAACTTCTCTCTTAATTACA 57.638 34.615 0.00 0.00 0.00 2.41
981 5669 8.470805 TCTAGCCAACTTCTCTCTTAATTACAG 58.529 37.037 0.00 0.00 0.00 2.74
1135 5829 1.916874 TCCGAGAAGAGAGGAAGGAGA 59.083 52.381 0.00 0.00 0.00 3.71
1183 5877 0.111061 AGCTTGCAACTCATGGACCA 59.889 50.000 0.00 0.00 0.00 4.02
1212 5906 2.463620 GCATCCATGCGCGTCTTCA 61.464 57.895 8.43 0.00 44.67 3.02
1255 5949 2.825836 GGCACCGATGAAGCTGGG 60.826 66.667 0.00 0.00 0.00 4.45
1275 5969 1.604604 CGGCCATGGGGTAGTATTTG 58.395 55.000 15.13 0.00 36.17 2.32
1276 5970 1.133915 CGGCCATGGGGTAGTATTTGT 60.134 52.381 15.13 0.00 36.17 2.83
1277 5971 2.685522 CGGCCATGGGGTAGTATTTGTT 60.686 50.000 15.13 0.00 36.17 2.83
1278 5972 2.693074 GGCCATGGGGTAGTATTTGTTG 59.307 50.000 15.13 0.00 36.17 3.33
1310 6059 4.263506 CCTTCCTTTGTTGTCCTGTCCTAT 60.264 45.833 0.00 0.00 0.00 2.57
1371 6132 9.906660 CAATTAAGGAAATAAAGCTTGTGTGTA 57.093 29.630 0.00 0.00 0.00 2.90
1374 6135 7.524717 AAGGAAATAAAGCTTGTGTGTATGT 57.475 32.000 0.00 0.00 0.00 2.29
1397 6158 8.958119 TGTGTCATGATTAATTTAGTACTCCC 57.042 34.615 0.00 0.00 0.00 4.30
1398 6159 8.768397 TGTGTCATGATTAATTTAGTACTCCCT 58.232 33.333 0.00 0.00 0.00 4.20
1399 6160 9.262358 GTGTCATGATTAATTTAGTACTCCCTC 57.738 37.037 0.00 0.00 0.00 4.30
1400 6161 8.429641 TGTCATGATTAATTTAGTACTCCCTCC 58.570 37.037 0.00 0.00 0.00 4.30
1401 6162 7.599245 GTCATGATTAATTTAGTACTCCCTCCG 59.401 40.741 0.00 0.00 0.00 4.63
1402 6163 7.289317 TCATGATTAATTTAGTACTCCCTCCGT 59.711 37.037 0.00 0.00 0.00 4.69
1403 6164 7.427989 TGATTAATTTAGTACTCCCTCCGTT 57.572 36.000 0.00 0.00 0.00 4.44
1404 6165 7.854337 TGATTAATTTAGTACTCCCTCCGTTT 58.146 34.615 0.00 0.00 0.00 3.60
1405 6166 7.983484 TGATTAATTTAGTACTCCCTCCGTTTC 59.017 37.037 0.00 0.00 0.00 2.78
1406 6167 7.486407 TTAATTTAGTACTCCCTCCGTTTCT 57.514 36.000 0.00 0.00 0.00 2.52
1407 6168 8.593945 TTAATTTAGTACTCCCTCCGTTTCTA 57.406 34.615 0.00 0.00 0.00 2.10
1408 6169 7.486407 AATTTAGTACTCCCTCCGTTTCTAA 57.514 36.000 0.00 0.00 0.00 2.10
1409 6170 6.916360 TTTAGTACTCCCTCCGTTTCTAAA 57.084 37.500 0.00 0.00 0.00 1.85
1410 6171 7.486407 TTTAGTACTCCCTCCGTTTCTAAAT 57.514 36.000 0.00 0.00 0.00 1.40
1411 6172 8.593945 TTTAGTACTCCCTCCGTTTCTAAATA 57.406 34.615 0.00 0.00 0.00 1.40
1412 6173 8.773033 TTAGTACTCCCTCCGTTTCTAAATAT 57.227 34.615 0.00 0.00 0.00 1.28
1413 6174 9.866655 TTAGTACTCCCTCCGTTTCTAAATATA 57.133 33.333 0.00 0.00 0.00 0.86
1414 6175 8.773033 AGTACTCCCTCCGTTTCTAAATATAA 57.227 34.615 0.00 0.00 0.00 0.98
1415 6176 8.858094 AGTACTCCCTCCGTTTCTAAATATAAG 58.142 37.037 0.00 0.00 0.00 1.73
1416 6177 7.909485 ACTCCCTCCGTTTCTAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
1417 6178 7.724287 ACTCCCTCCGTTTCTAAATATAAGAC 58.276 38.462 0.00 0.00 0.00 3.01
1418 6179 7.059202 TCCCTCCGTTTCTAAATATAAGACC 57.941 40.000 0.00 0.00 0.00 3.85
1419 6180 6.842807 TCCCTCCGTTTCTAAATATAAGACCT 59.157 38.462 0.00 0.00 0.00 3.85
1420 6181 7.346436 TCCCTCCGTTTCTAAATATAAGACCTT 59.654 37.037 0.00 0.00 0.00 3.50
1421 6182 7.656542 CCCTCCGTTTCTAAATATAAGACCTTC 59.343 40.741 0.00 0.00 0.00 3.46
1422 6183 8.422566 CCTCCGTTTCTAAATATAAGACCTTCT 58.577 37.037 0.00 0.00 0.00 2.85
1440 6201 9.389755 AGACCTTCTAGAGATTTCAATAAAAGC 57.610 33.333 0.00 0.00 33.35 3.51
1441 6202 9.389755 GACCTTCTAGAGATTTCAATAAAAGCT 57.610 33.333 0.00 0.00 45.98 3.74
1447 6208 9.267084 CTAGAGATTTCAATAAAAGCTACTCCC 57.733 37.037 0.00 0.00 43.45 4.30
1448 6209 7.866870 AGAGATTTCAATAAAAGCTACTCCCT 58.133 34.615 0.00 0.00 43.45 4.20
1449 6210 7.990314 AGAGATTTCAATAAAAGCTACTCCCTC 59.010 37.037 0.00 0.00 43.45 4.30
1450 6211 7.057264 AGATTTCAATAAAAGCTACTCCCTCC 58.943 38.462 0.00 0.00 41.68 4.30
1451 6212 4.402056 TCAATAAAAGCTACTCCCTCCG 57.598 45.455 0.00 0.00 0.00 4.63
1452 6213 3.773119 TCAATAAAAGCTACTCCCTCCGT 59.227 43.478 0.00 0.00 0.00 4.69
1453 6214 4.120589 CAATAAAAGCTACTCCCTCCGTC 58.879 47.826 0.00 0.00 0.00 4.79
1454 6215 0.903236 AAAAGCTACTCCCTCCGTCC 59.097 55.000 0.00 0.00 0.00 4.79
1455 6216 0.976590 AAAGCTACTCCCTCCGTCCC 60.977 60.000 0.00 0.00 0.00 4.46
1456 6217 2.043248 GCTACTCCCTCCGTCCCA 60.043 66.667 0.00 0.00 0.00 4.37
1457 6218 1.457831 GCTACTCCCTCCGTCCCAT 60.458 63.158 0.00 0.00 0.00 4.00
1458 6219 0.178970 GCTACTCCCTCCGTCCCATA 60.179 60.000 0.00 0.00 0.00 2.74
1459 6220 1.756690 GCTACTCCCTCCGTCCCATAA 60.757 57.143 0.00 0.00 0.00 1.90
1460 6221 2.890814 CTACTCCCTCCGTCCCATAAT 58.109 52.381 0.00 0.00 0.00 1.28
1461 6222 3.816842 GCTACTCCCTCCGTCCCATAATA 60.817 52.174 0.00 0.00 0.00 0.98
1462 6223 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
1463 6224 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
1464 6225 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
1465 6226 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
1466 6227 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
1467 6228 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
1468 6229 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
1469 6230 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
1470 6231 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
1471 6232 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
1472 6233 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
1473 6234 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
1474 6235 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
1499 6260 8.767478 TTATACTAGTGTAGTGTCAAAAAGGC 57.233 34.615 5.39 0.00 39.81 4.35
1500 6261 5.291905 ACTAGTGTAGTGTCAAAAAGGCT 57.708 39.130 0.00 0.00 37.69 4.58
1501 6262 5.298347 ACTAGTGTAGTGTCAAAAAGGCTC 58.702 41.667 0.00 0.00 37.69 4.70
1502 6263 4.423625 AGTGTAGTGTCAAAAAGGCTCT 57.576 40.909 0.00 0.00 0.00 4.09
1503 6264 4.781934 AGTGTAGTGTCAAAAAGGCTCTT 58.218 39.130 0.00 0.00 0.00 2.85
1504 6265 5.925509 AGTGTAGTGTCAAAAAGGCTCTTA 58.074 37.500 0.00 0.00 0.00 2.10
1505 6266 6.534634 AGTGTAGTGTCAAAAAGGCTCTTAT 58.465 36.000 0.00 0.00 0.00 1.73
1506 6267 7.676947 AGTGTAGTGTCAAAAAGGCTCTTATA 58.323 34.615 0.00 0.00 0.00 0.98
1507 6268 8.322091 AGTGTAGTGTCAAAAAGGCTCTTATAT 58.678 33.333 0.00 0.00 0.00 0.86
1508 6269 8.947115 GTGTAGTGTCAAAAAGGCTCTTATATT 58.053 33.333 0.00 0.00 0.00 1.28
1512 6273 9.125026 AGTGTCAAAAAGGCTCTTATATTATGG 57.875 33.333 0.00 0.00 0.00 2.74
1513 6274 8.352942 GTGTCAAAAAGGCTCTTATATTATGGG 58.647 37.037 0.00 0.00 0.00 4.00
1514 6275 8.278639 TGTCAAAAAGGCTCTTATATTATGGGA 58.721 33.333 0.00 0.00 0.00 4.37
1515 6276 8.568794 GTCAAAAAGGCTCTTATATTATGGGAC 58.431 37.037 0.00 0.00 0.00 4.46
1516 6277 7.444183 TCAAAAAGGCTCTTATATTATGGGACG 59.556 37.037 0.00 0.00 0.00 4.79
1517 6278 5.422214 AAGGCTCTTATATTATGGGACGG 57.578 43.478 0.00 0.00 0.00 4.79
1518 6279 4.684724 AGGCTCTTATATTATGGGACGGA 58.315 43.478 0.00 0.00 0.00 4.69
1519 6280 4.712337 AGGCTCTTATATTATGGGACGGAG 59.288 45.833 0.00 0.00 0.00 4.63
1520 6281 4.710375 GGCTCTTATATTATGGGACGGAGA 59.290 45.833 0.00 0.00 0.00 3.71
1521 6282 5.187186 GGCTCTTATATTATGGGACGGAGAA 59.813 44.000 0.00 0.00 0.00 2.87
1522 6283 6.295688 GGCTCTTATATTATGGGACGGAGAAA 60.296 42.308 0.00 0.00 0.00 2.52
1523 6284 6.814146 GCTCTTATATTATGGGACGGAGAAAG 59.186 42.308 0.00 0.00 0.00 2.62
1524 6285 7.525692 GCTCTTATATTATGGGACGGAGAAAGT 60.526 40.741 0.00 0.00 0.00 2.66
1525 6286 8.945195 TCTTATATTATGGGACGGAGAAAGTA 57.055 34.615 0.00 0.00 0.00 2.24
1526 6287 9.370930 TCTTATATTATGGGACGGAGAAAGTAA 57.629 33.333 0.00 0.00 0.00 2.24
1527 6288 9.991906 CTTATATTATGGGACGGAGAAAGTAAA 57.008 33.333 0.00 0.00 0.00 2.01
1530 6291 9.939802 ATATTATGGGACGGAGAAAGTAAATAC 57.060 33.333 0.00 0.00 0.00 1.89
1531 6292 4.114058 TGGGACGGAGAAAGTAAATACG 57.886 45.455 0.00 0.00 0.00 3.06
1532 6293 3.763360 TGGGACGGAGAAAGTAAATACGA 59.237 43.478 0.00 0.00 0.00 3.43
1533 6294 4.403432 TGGGACGGAGAAAGTAAATACGAT 59.597 41.667 0.00 0.00 0.00 3.73
1534 6295 4.743644 GGGACGGAGAAAGTAAATACGATG 59.256 45.833 0.00 0.00 0.00 3.84
1535 6296 5.346522 GGACGGAGAAAGTAAATACGATGT 58.653 41.667 0.00 0.00 0.00 3.06
1536 6297 6.460123 GGGACGGAGAAAGTAAATACGATGTA 60.460 42.308 0.00 0.00 0.00 2.29
1537 6298 7.144000 GGACGGAGAAAGTAAATACGATGTAT 58.856 38.462 0.00 0.00 0.00 2.29
1538 6299 8.292448 GGACGGAGAAAGTAAATACGATGTATA 58.708 37.037 0.00 0.00 0.00 1.47
1539 6300 9.837525 GACGGAGAAAGTAAATACGATGTATAT 57.162 33.333 0.00 0.00 0.00 0.86
1540 6301 9.622004 ACGGAGAAAGTAAATACGATGTATATG 57.378 33.333 0.00 0.00 0.00 1.78
1541 6302 9.836076 CGGAGAAAGTAAATACGATGTATATGA 57.164 33.333 0.00 0.00 0.00 2.15
1565 6326 9.350357 TGAACGTATTTTAGAGTGTAGATTCAC 57.650 33.333 0.00 0.00 38.46 3.18
1576 6337 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
1577 6338 6.471146 AGTGTAGATTCACTCATTTTGCTCT 58.529 36.000 0.00 0.00 44.07 4.09
1578 6339 6.370994 AGTGTAGATTCACTCATTTTGCTCTG 59.629 38.462 0.00 0.00 44.07 3.35
1579 6340 4.698583 AGATTCACTCATTTTGCTCTGC 57.301 40.909 0.00 0.00 0.00 4.26
1580 6341 4.077108 AGATTCACTCATTTTGCTCTGCA 58.923 39.130 0.00 0.00 36.47 4.41
1581 6342 4.705507 AGATTCACTCATTTTGCTCTGCAT 59.294 37.500 0.00 0.00 38.76 3.96
1582 6343 3.842732 TCACTCATTTTGCTCTGCATG 57.157 42.857 0.00 0.00 38.76 4.06
1583 6344 3.151554 TCACTCATTTTGCTCTGCATGT 58.848 40.909 0.00 0.00 38.76 3.21
1584 6345 4.325972 TCACTCATTTTGCTCTGCATGTA 58.674 39.130 0.00 0.00 38.76 2.29
1585 6346 4.393990 TCACTCATTTTGCTCTGCATGTAG 59.606 41.667 4.14 4.14 38.76 2.74
1586 6347 4.155462 CACTCATTTTGCTCTGCATGTAGT 59.845 41.667 10.80 0.00 38.76 2.73
1587 6348 4.763793 ACTCATTTTGCTCTGCATGTAGTT 59.236 37.500 10.80 0.00 38.76 2.24
1588 6349 5.106396 ACTCATTTTGCTCTGCATGTAGTTC 60.106 40.000 10.80 4.66 38.76 3.01
1589 6350 4.761227 TCATTTTGCTCTGCATGTAGTTCA 59.239 37.500 10.80 7.11 38.76 3.18
1590 6351 4.488126 TTTTGCTCTGCATGTAGTTCAC 57.512 40.909 10.80 0.23 38.76 3.18
1591 6352 2.837532 TGCTCTGCATGTAGTTCACA 57.162 45.000 10.80 2.73 42.69 3.58
1593 6354 3.678289 TGCTCTGCATGTAGTTCACATT 58.322 40.909 10.80 0.00 46.01 2.71
1594 6355 3.437741 TGCTCTGCATGTAGTTCACATTG 59.562 43.478 10.80 0.00 46.01 2.82
1595 6356 3.686241 GCTCTGCATGTAGTTCACATTGA 59.314 43.478 10.80 0.00 46.01 2.57
1596 6357 4.154737 GCTCTGCATGTAGTTCACATTGAA 59.845 41.667 10.80 0.00 46.01 2.69
1597 6358 5.335113 GCTCTGCATGTAGTTCACATTGAAA 60.335 40.000 10.80 0.00 46.01 2.69
1598 6359 6.624423 GCTCTGCATGTAGTTCACATTGAAAT 60.624 38.462 10.80 0.00 46.01 2.17
1599 6360 7.218228 TCTGCATGTAGTTCACATTGAAATT 57.782 32.000 10.80 0.00 46.01 1.82
1600 6361 7.660112 TCTGCATGTAGTTCACATTGAAATTT 58.340 30.769 10.80 0.00 46.01 1.82
1601 6362 7.809331 TCTGCATGTAGTTCACATTGAAATTTC 59.191 33.333 11.41 11.41 46.01 2.17
1602 6363 7.660112 TGCATGTAGTTCACATTGAAATTTCT 58.340 30.769 18.64 0.00 46.01 2.52
1603 6364 8.791675 TGCATGTAGTTCACATTGAAATTTCTA 58.208 29.630 18.64 12.00 46.01 2.10
1604 6365 9.624697 GCATGTAGTTCACATTGAAATTTCTAA 57.375 29.630 18.64 11.53 46.01 2.10
1643 6404 5.662456 AGAAACGGAGAAAGTATAAGGAGC 58.338 41.667 0.00 0.00 0.00 4.70
1657 6418 2.674380 GAGCACTTGGGCCCACAG 60.674 66.667 28.70 25.82 0.00 3.66
1677 6439 4.181578 CAGAACCCGTGTTTAGTAGATGG 58.818 47.826 0.00 0.00 33.97 3.51
1679 6444 3.881937 ACCCGTGTTTAGTAGATGGAC 57.118 47.619 0.00 0.00 0.00 4.02
1684 6449 3.518590 GTGTTTAGTAGATGGACCACGG 58.481 50.000 0.00 0.00 0.00 4.94
1706 6471 2.796032 GCCTAACTGAAATGCAATCCGC 60.796 50.000 0.00 0.00 42.89 5.54
1800 6726 8.803397 GGATTAGTCCATTGGTTAGTACTTTT 57.197 34.615 0.00 0.00 44.42 2.27
1853 6779 2.903855 CATGCTCCACCCATCCGC 60.904 66.667 0.00 0.00 0.00 5.54
1993 7164 5.365619 AGACCACTCTTGAATACGTTTTGT 58.634 37.500 0.00 0.00 0.00 2.83
1994 7165 5.820947 AGACCACTCTTGAATACGTTTTGTT 59.179 36.000 0.00 0.00 0.00 2.83
2000 7171 9.155053 CACTCTTGAATACGTTTTGTTAAGTTC 57.845 33.333 0.00 0.00 0.00 3.01
2017 7188 9.672086 TGTTAAGTTCTAAAATTTTCACGATGG 57.328 29.630 6.72 0.00 0.00 3.51
2039 7210 7.581213 TGGTTCATCTGTTAAAACTTGACAT 57.419 32.000 0.00 0.00 0.00 3.06
2063 7234 7.147958 TGATGAGGGATAAAATCACCATGTA 57.852 36.000 0.00 0.00 31.36 2.29
2210 7438 2.417339 TCGAGTGACCTTGTTCGAAG 57.583 50.000 0.00 0.00 38.92 3.79
2219 7447 2.413837 CCTTGTTCGAAGGTCATCGTT 58.586 47.619 0.00 0.00 43.19 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 1.708193 CTGATTTGCAGCGCGGATGA 61.708 55.000 13.03 0.00 37.90 2.92
9 10 3.104766 CTGATTTGCAGCGCGGAT 58.895 55.556 13.03 0.00 37.90 4.18
16 17 3.423206 GCAAAAAGACGACTGATTTGCAG 59.577 43.478 28.73 10.09 46.70 4.41
18 19 2.401720 CGCAAAAAGACGACTGATTTGC 59.598 45.455 26.27 26.27 45.54 3.68
19 20 3.418619 CACGCAAAAAGACGACTGATTTG 59.581 43.478 16.44 16.44 37.09 2.32
20 21 3.311322 TCACGCAAAAAGACGACTGATTT 59.689 39.130 0.00 0.00 0.00 2.17
21 22 2.869801 TCACGCAAAAAGACGACTGATT 59.130 40.909 0.00 0.00 0.00 2.57
25 26 2.869801 TGATTCACGCAAAAAGACGACT 59.130 40.909 0.00 0.00 0.00 4.18
26 27 3.059868 TCTGATTCACGCAAAAAGACGAC 60.060 43.478 0.00 0.00 0.00 4.34
29 30 4.214437 CACTCTGATTCACGCAAAAAGAC 58.786 43.478 0.00 0.00 0.00 3.01
30 31 3.303990 GCACTCTGATTCACGCAAAAAGA 60.304 43.478 0.00 0.00 0.00 2.52
31 32 2.975851 GCACTCTGATTCACGCAAAAAG 59.024 45.455 0.00 0.00 0.00 2.27
32 33 2.601979 CGCACTCTGATTCACGCAAAAA 60.602 45.455 0.00 0.00 0.00 1.94
33 34 1.069973 CGCACTCTGATTCACGCAAAA 60.070 47.619 0.00 0.00 0.00 2.44
34 35 0.512518 CGCACTCTGATTCACGCAAA 59.487 50.000 0.00 0.00 0.00 3.68
36 37 2.382746 GCGCACTCTGATTCACGCA 61.383 57.895 0.30 0.00 45.25 5.24
37 38 2.288926 CTGCGCACTCTGATTCACGC 62.289 60.000 5.66 10.59 46.05 5.34
38 39 0.733909 TCTGCGCACTCTGATTCACG 60.734 55.000 5.66 0.00 0.00 4.35
39 40 0.718343 GTCTGCGCACTCTGATTCAC 59.282 55.000 5.66 0.00 0.00 3.18
41 42 0.390340 TGGTCTGCGCACTCTGATTC 60.390 55.000 5.66 0.00 0.00 2.52
42 43 0.671781 GTGGTCTGCGCACTCTGATT 60.672 55.000 5.66 0.00 0.00 2.57
44 45 2.340078 GTGGTCTGCGCACTCTGA 59.660 61.111 5.66 0.00 0.00 3.27
45 46 2.740055 GGTGGTCTGCGCACTCTG 60.740 66.667 5.66 0.00 0.00 3.35
46 47 3.233980 TGGTGGTCTGCGCACTCT 61.234 61.111 5.66 0.00 0.00 3.24
47 48 3.044305 GTGGTGGTCTGCGCACTC 61.044 66.667 5.66 1.59 0.00 3.51
48 49 3.182590 ATGTGGTGGTCTGCGCACT 62.183 57.895 5.66 0.00 0.00 4.40
49 50 2.669569 ATGTGGTGGTCTGCGCAC 60.670 61.111 5.66 0.00 0.00 5.34
50 51 2.669229 CATGTGGTGGTCTGCGCA 60.669 61.111 10.98 10.98 0.00 6.09
51 52 4.107051 GCATGTGGTGGTCTGCGC 62.107 66.667 0.00 0.00 0.00 6.09
53 54 3.271014 CAGCATGTGGTGGTCTGC 58.729 61.111 4.35 0.00 39.67 4.26
64 65 1.022982 ACGGCAGATGTGACAGCATG 61.023 55.000 2.86 0.00 46.00 4.06
66 67 1.668793 CACGGCAGATGTGACAGCA 60.669 57.895 2.86 0.00 39.73 4.41
67 68 2.393768 CCACGGCAGATGTGACAGC 61.394 63.158 0.00 0.00 39.73 4.40
74 75 4.465512 GTTGCGCCACGGCAGATG 62.466 66.667 4.18 0.00 44.94 2.90
93 94 0.672342 CTCCTGTTTGCAGCAAAGCT 59.328 50.000 21.21 0.00 41.26 3.74
94 95 0.386838 ACTCCTGTTTGCAGCAAAGC 59.613 50.000 21.21 15.37 41.26 3.51
95 96 1.866880 GCACTCCTGTTTGCAGCAAAG 60.867 52.381 21.21 11.29 41.26 2.77
96 97 0.102844 GCACTCCTGTTTGCAGCAAA 59.897 50.000 16.93 16.93 41.26 3.68
97 98 1.036481 TGCACTCCTGTTTGCAGCAA 61.036 50.000 2.83 2.83 43.79 3.91
98 99 1.453562 TGCACTCCTGTTTGCAGCA 60.454 52.632 0.00 0.00 43.79 4.41
99 100 3.435590 TGCACTCCTGTTTGCAGC 58.564 55.556 0.00 0.00 43.79 5.25
101 102 1.401761 ACATTGCACTCCTGTTTGCA 58.598 45.000 0.00 0.00 46.93 4.08
102 103 2.514205 AACATTGCACTCCTGTTTGC 57.486 45.000 0.00 0.00 39.33 3.68
103 104 3.922240 GCATAACATTGCACTCCTGTTTG 59.078 43.478 8.03 7.76 42.31 2.93
105 106 3.855689 GCATAACATTGCACTCCTGTT 57.144 42.857 7.88 7.88 42.31 3.16
114 115 4.802039 CACCTTCAGATTGCATAACATTGC 59.198 41.667 0.00 0.00 43.07 3.56
115 116 6.032094 GTCACCTTCAGATTGCATAACATTG 58.968 40.000 0.00 0.00 0.00 2.82
116 117 5.126061 GGTCACCTTCAGATTGCATAACATT 59.874 40.000 0.00 0.00 0.00 2.71
117 118 4.641989 GGTCACCTTCAGATTGCATAACAT 59.358 41.667 0.00 0.00 0.00 2.71
118 119 4.009675 GGTCACCTTCAGATTGCATAACA 58.990 43.478 0.00 0.00 0.00 2.41
128 4594 1.830587 ATGCTGCGGTCACCTTCAGA 61.831 55.000 15.05 3.41 0.00 3.27
298 4765 2.783828 CGAGTCGCTGGATATGTCTT 57.216 50.000 0.00 0.00 0.00 3.01
323 4790 6.005583 CTGTTCTTTTGCAAAGATCAGCTA 57.994 37.500 22.43 6.37 37.32 3.32
450 5080 4.905429 TCAACCACAATAGTGCACTACAT 58.095 39.130 28.28 17.34 44.53 2.29
470 5100 2.915659 ACCGCCGGTGAGTTCTCA 60.916 61.111 18.79 0.00 32.98 3.27
505 5135 4.837896 AAACTTCAGCTTTAGCAGGTTC 57.162 40.909 4.33 0.00 45.16 3.62
517 5147 6.085849 CGAACCGTTGTATTTAAAACTTCAGC 59.914 38.462 0.00 0.00 0.00 4.26
566 5196 1.989165 CGCACTCTGAAAGTAGTCTGC 59.011 52.381 0.00 0.00 36.07 4.26
628 5259 2.820197 CCGACTCCCGAGATGATATTGA 59.180 50.000 0.00 0.00 41.76 2.57
662 5294 6.149973 TGCATTGTCTGTCCTTAAAATCTGAG 59.850 38.462 0.00 0.00 0.00 3.35
760 5393 3.331478 AAGCAGAGAAGGTGATGAGTG 57.669 47.619 0.00 0.00 0.00 3.51
768 5401 5.088026 ACTACTCCTAAAAGCAGAGAAGGT 58.912 41.667 0.00 0.00 0.00 3.50
796 5449 0.920438 TATGCAAACCGGGGGTGTAT 59.080 50.000 6.32 8.21 35.34 2.29
797 5450 0.920438 ATATGCAAACCGGGGGTGTA 59.080 50.000 6.32 0.00 35.34 2.90
798 5451 0.682855 CATATGCAAACCGGGGGTGT 60.683 55.000 6.32 0.00 35.34 4.16
823 5488 2.076863 CGTCTCCTTTGCTGGTTTAGG 58.923 52.381 0.00 0.00 0.00 2.69
831 5496 0.666577 GCACGTACGTCTCCTTTGCT 60.667 55.000 19.94 0.00 0.00 3.91
842 5507 5.045215 TCTTAATTTCTATGGGCACGTACG 58.955 41.667 15.01 15.01 0.00 3.67
843 5508 6.511282 GCTTCTTAATTTCTATGGGCACGTAC 60.511 42.308 0.00 0.00 0.00 3.67
844 5509 5.526111 GCTTCTTAATTTCTATGGGCACGTA 59.474 40.000 0.00 0.00 0.00 3.57
845 5510 4.335594 GCTTCTTAATTTCTATGGGCACGT 59.664 41.667 0.00 0.00 0.00 4.49
846 5511 4.261197 GGCTTCTTAATTTCTATGGGCACG 60.261 45.833 0.00 0.00 0.00 5.34
884 5553 1.817357 GGGCGTGTATTTATAGGGGC 58.183 55.000 0.00 0.00 0.00 5.80
902 5590 0.237235 GTGTTGGTGTGTGCATACGG 59.763 55.000 9.18 0.00 0.00 4.02
925 5613 2.498167 GCTTGAGTTGATGTGTCTGGT 58.502 47.619 0.00 0.00 0.00 4.00
926 5614 1.808945 GGCTTGAGTTGATGTGTCTGG 59.191 52.381 0.00 0.00 0.00 3.86
927 5615 2.775890 AGGCTTGAGTTGATGTGTCTG 58.224 47.619 0.00 0.00 0.00 3.51
928 5616 3.406764 GAAGGCTTGAGTTGATGTGTCT 58.593 45.455 3.46 0.00 0.00 3.41
929 5617 2.158449 CGAAGGCTTGAGTTGATGTGTC 59.842 50.000 3.46 0.00 0.00 3.67
930 5618 2.146342 CGAAGGCTTGAGTTGATGTGT 58.854 47.619 3.46 0.00 0.00 3.72
950 5638 4.270008 AGAGAGAAGTTGGCTAGAGAGAC 58.730 47.826 0.00 0.00 0.00 3.36
954 5642 8.470805 TGTAATTAAGAGAGAAGTTGGCTAGAG 58.529 37.037 0.00 0.00 0.00 2.43
971 5659 7.068348 TGAGTAGGACTGTAGGCTGTAATTAAG 59.932 40.741 0.00 0.00 0.00 1.85
972 5660 6.893554 TGAGTAGGACTGTAGGCTGTAATTAA 59.106 38.462 0.00 0.00 0.00 1.40
973 5661 6.429151 TGAGTAGGACTGTAGGCTGTAATTA 58.571 40.000 0.00 0.00 0.00 1.40
974 5662 5.269991 TGAGTAGGACTGTAGGCTGTAATT 58.730 41.667 0.00 0.00 0.00 1.40
975 5663 4.868268 TGAGTAGGACTGTAGGCTGTAAT 58.132 43.478 0.00 0.00 0.00 1.89
976 5664 4.311520 TGAGTAGGACTGTAGGCTGTAA 57.688 45.455 0.00 0.00 0.00 2.41
977 5665 4.015084 GTTGAGTAGGACTGTAGGCTGTA 58.985 47.826 0.00 0.00 0.00 2.74
978 5666 2.826725 GTTGAGTAGGACTGTAGGCTGT 59.173 50.000 0.00 0.00 0.00 4.40
979 5667 2.826128 TGTTGAGTAGGACTGTAGGCTG 59.174 50.000 0.00 0.00 0.00 4.85
980 5668 3.170991 TGTTGAGTAGGACTGTAGGCT 57.829 47.619 0.00 0.00 0.00 4.58
981 5669 3.430929 CCATGTTGAGTAGGACTGTAGGC 60.431 52.174 0.00 0.00 0.00 3.93
1135 5829 3.251484 TCTCCTCTTCACCCATGAAACT 58.749 45.455 0.00 0.00 44.28 2.66
1255 5949 0.179001 AAATACTACCCCATGGCCGC 60.179 55.000 6.09 0.00 33.59 6.53
1259 5953 4.340617 ACACAACAAATACTACCCCATGG 58.659 43.478 4.14 4.14 37.80 3.66
1275 5969 4.204799 ACAAAGGAAGGGAAGTACACAAC 58.795 43.478 0.00 0.00 0.00 3.32
1276 5970 4.513406 ACAAAGGAAGGGAAGTACACAA 57.487 40.909 0.00 0.00 0.00 3.33
1277 5971 4.204012 CAACAAAGGAAGGGAAGTACACA 58.796 43.478 0.00 0.00 0.00 3.72
1278 5972 4.204799 ACAACAAAGGAAGGGAAGTACAC 58.795 43.478 0.00 0.00 0.00 2.90
1371 6132 9.561069 GGGAGTACTAAATTAATCATGACACAT 57.439 33.333 0.00 0.00 0.00 3.21
1372 6133 8.768397 AGGGAGTACTAAATTAATCATGACACA 58.232 33.333 0.00 0.00 0.00 3.72
1373 6134 9.262358 GAGGGAGTACTAAATTAATCATGACAC 57.738 37.037 0.00 0.00 0.00 3.67
1374 6135 8.429641 GGAGGGAGTACTAAATTAATCATGACA 58.570 37.037 0.00 0.00 0.00 3.58
1391 6152 8.854117 GTCTTATATTTAGAAACGGAGGGAGTA 58.146 37.037 0.00 0.00 0.00 2.59
1392 6153 7.201983 GGTCTTATATTTAGAAACGGAGGGAGT 60.202 40.741 0.00 0.00 0.00 3.85
1393 6154 7.015389 AGGTCTTATATTTAGAAACGGAGGGAG 59.985 40.741 0.00 0.00 0.00 4.30
1394 6155 6.842807 AGGTCTTATATTTAGAAACGGAGGGA 59.157 38.462 0.00 0.00 0.00 4.20
1395 6156 7.063934 AGGTCTTATATTTAGAAACGGAGGG 57.936 40.000 0.00 0.00 0.00 4.30
1396 6157 8.422566 AGAAGGTCTTATATTTAGAAACGGAGG 58.577 37.037 0.00 0.00 0.00 4.30
1414 6175 9.389755 GCTTTTATTGAAATCTCTAGAAGGTCT 57.610 33.333 0.00 0.00 0.00 3.85
1415 6176 9.389755 AGCTTTTATTGAAATCTCTAGAAGGTC 57.610 33.333 0.00 0.00 0.00 3.85
1421 6182 9.267084 GGGAGTAGCTTTTATTGAAATCTCTAG 57.733 37.037 0.00 0.00 0.00 2.43
1422 6183 8.993424 AGGGAGTAGCTTTTATTGAAATCTCTA 58.007 33.333 0.00 0.00 0.00 2.43
1423 6184 7.866870 AGGGAGTAGCTTTTATTGAAATCTCT 58.133 34.615 0.00 0.00 0.00 3.10
1424 6185 7.227711 GGAGGGAGTAGCTTTTATTGAAATCTC 59.772 40.741 0.00 0.00 0.00 2.75
1425 6186 7.057264 GGAGGGAGTAGCTTTTATTGAAATCT 58.943 38.462 0.00 0.00 0.00 2.40
1426 6187 6.017852 CGGAGGGAGTAGCTTTTATTGAAATC 60.018 42.308 0.00 0.00 0.00 2.17
1427 6188 5.823045 CGGAGGGAGTAGCTTTTATTGAAAT 59.177 40.000 0.00 0.00 0.00 2.17
1428 6189 5.183228 CGGAGGGAGTAGCTTTTATTGAAA 58.817 41.667 0.00 0.00 0.00 2.69
1429 6190 4.224370 ACGGAGGGAGTAGCTTTTATTGAA 59.776 41.667 0.00 0.00 0.00 2.69
1430 6191 3.773119 ACGGAGGGAGTAGCTTTTATTGA 59.227 43.478 0.00 0.00 0.00 2.57
1431 6192 4.120589 GACGGAGGGAGTAGCTTTTATTG 58.879 47.826 0.00 0.00 0.00 1.90
1432 6193 3.134262 GGACGGAGGGAGTAGCTTTTATT 59.866 47.826 0.00 0.00 0.00 1.40
1433 6194 2.699321 GGACGGAGGGAGTAGCTTTTAT 59.301 50.000 0.00 0.00 0.00 1.40
1434 6195 2.105766 GGACGGAGGGAGTAGCTTTTA 58.894 52.381 0.00 0.00 0.00 1.52
1435 6196 0.903236 GGACGGAGGGAGTAGCTTTT 59.097 55.000 0.00 0.00 0.00 2.27
1436 6197 0.976590 GGGACGGAGGGAGTAGCTTT 60.977 60.000 0.00 0.00 0.00 3.51
1437 6198 1.381463 GGGACGGAGGGAGTAGCTT 60.381 63.158 0.00 0.00 0.00 3.74
1438 6199 1.950748 ATGGGACGGAGGGAGTAGCT 61.951 60.000 0.00 0.00 0.00 3.32
1439 6200 0.178970 TATGGGACGGAGGGAGTAGC 60.179 60.000 0.00 0.00 0.00 3.58
1440 6201 2.376695 TTATGGGACGGAGGGAGTAG 57.623 55.000 0.00 0.00 0.00 2.57
1441 6202 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
1442 6203 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
1443 6204 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
1444 6205 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
1445 6206 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
1446 6207 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
1447 6208 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
1448 6209 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
1449 6210 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
1450 6211 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
1473 6234 9.211485 GCCTTTTTGACACTACACTAGTATAAA 57.789 33.333 0.00 0.00 37.23 1.40
1474 6235 8.591072 AGCCTTTTTGACACTACACTAGTATAA 58.409 33.333 0.00 0.00 37.23 0.98
1475 6236 8.130671 AGCCTTTTTGACACTACACTAGTATA 57.869 34.615 0.00 0.00 37.23 1.47
1476 6237 7.005709 AGCCTTTTTGACACTACACTAGTAT 57.994 36.000 0.00 0.00 37.23 2.12
1477 6238 6.267014 AGAGCCTTTTTGACACTACACTAGTA 59.733 38.462 0.00 0.00 37.23 1.82
1478 6239 5.070580 AGAGCCTTTTTGACACTACACTAGT 59.929 40.000 0.00 0.00 40.28 2.57
1479 6240 5.542779 AGAGCCTTTTTGACACTACACTAG 58.457 41.667 0.00 0.00 0.00 2.57
1480 6241 5.546621 AGAGCCTTTTTGACACTACACTA 57.453 39.130 0.00 0.00 0.00 2.74
1481 6242 4.423625 AGAGCCTTTTTGACACTACACT 57.576 40.909 0.00 0.00 0.00 3.55
1482 6243 6.803154 ATAAGAGCCTTTTTGACACTACAC 57.197 37.500 0.00 0.00 0.00 2.90
1486 6247 9.125026 CCATAATATAAGAGCCTTTTTGACACT 57.875 33.333 0.00 0.00 0.00 3.55
1487 6248 8.352942 CCCATAATATAAGAGCCTTTTTGACAC 58.647 37.037 0.00 0.00 0.00 3.67
1488 6249 8.278639 TCCCATAATATAAGAGCCTTTTTGACA 58.721 33.333 0.00 0.00 0.00 3.58
1489 6250 8.568794 GTCCCATAATATAAGAGCCTTTTTGAC 58.431 37.037 0.00 0.00 0.00 3.18
1490 6251 7.444183 CGTCCCATAATATAAGAGCCTTTTTGA 59.556 37.037 0.00 0.00 0.00 2.69
1491 6252 7.308589 CCGTCCCATAATATAAGAGCCTTTTTG 60.309 40.741 0.00 0.00 0.00 2.44
1492 6253 6.715264 CCGTCCCATAATATAAGAGCCTTTTT 59.285 38.462 0.00 0.00 0.00 1.94
1493 6254 6.043938 TCCGTCCCATAATATAAGAGCCTTTT 59.956 38.462 0.00 0.00 0.00 2.27
1494 6255 5.546499 TCCGTCCCATAATATAAGAGCCTTT 59.454 40.000 0.00 0.00 0.00 3.11
1495 6256 5.091552 TCCGTCCCATAATATAAGAGCCTT 58.908 41.667 0.00 0.00 0.00 4.35
1496 6257 4.684724 TCCGTCCCATAATATAAGAGCCT 58.315 43.478 0.00 0.00 0.00 4.58
1497 6258 4.710375 TCTCCGTCCCATAATATAAGAGCC 59.290 45.833 0.00 0.00 0.00 4.70
1498 6259 5.916661 TCTCCGTCCCATAATATAAGAGC 57.083 43.478 0.00 0.00 0.00 4.09
1499 6260 7.897864 ACTTTCTCCGTCCCATAATATAAGAG 58.102 38.462 0.00 0.00 0.00 2.85
1500 6261 7.850935 ACTTTCTCCGTCCCATAATATAAGA 57.149 36.000 0.00 0.00 0.00 2.10
1501 6262 9.991906 TTTACTTTCTCCGTCCCATAATATAAG 57.008 33.333 0.00 0.00 0.00 1.73
1504 6265 9.939802 GTATTTACTTTCTCCGTCCCATAATAT 57.060 33.333 0.00 0.00 0.00 1.28
1505 6266 8.084073 CGTATTTACTTTCTCCGTCCCATAATA 58.916 37.037 0.00 0.00 0.00 0.98
1506 6267 6.927381 CGTATTTACTTTCTCCGTCCCATAAT 59.073 38.462 0.00 0.00 0.00 1.28
1507 6268 6.096705 TCGTATTTACTTTCTCCGTCCCATAA 59.903 38.462 0.00 0.00 0.00 1.90
1508 6269 5.593909 TCGTATTTACTTTCTCCGTCCCATA 59.406 40.000 0.00 0.00 0.00 2.74
1509 6270 4.403432 TCGTATTTACTTTCTCCGTCCCAT 59.597 41.667 0.00 0.00 0.00 4.00
1510 6271 3.763360 TCGTATTTACTTTCTCCGTCCCA 59.237 43.478 0.00 0.00 0.00 4.37
1511 6272 4.376340 TCGTATTTACTTTCTCCGTCCC 57.624 45.455 0.00 0.00 0.00 4.46
1512 6273 5.346522 ACATCGTATTTACTTTCTCCGTCC 58.653 41.667 0.00 0.00 0.00 4.79
1513 6274 9.837525 ATATACATCGTATTTACTTTCTCCGTC 57.162 33.333 0.00 0.00 0.00 4.79
1514 6275 9.622004 CATATACATCGTATTTACTTTCTCCGT 57.378 33.333 0.00 0.00 0.00 4.69
1515 6276 9.836076 TCATATACATCGTATTTACTTTCTCCG 57.164 33.333 0.00 0.00 0.00 4.63
1539 6300 9.350357 GTGAATCTACACTCTAAAATACGTTCA 57.650 33.333 0.00 0.00 37.73 3.18
1540 6301 9.570488 AGTGAATCTACACTCTAAAATACGTTC 57.430 33.333 0.00 0.00 46.36 3.95
1554 6315 6.541086 CAGAGCAAAATGAGTGAATCTACAC 58.459 40.000 0.00 0.00 40.60 2.90
1555 6316 5.122869 GCAGAGCAAAATGAGTGAATCTACA 59.877 40.000 0.00 0.00 0.00 2.74
1556 6317 5.122869 TGCAGAGCAAAATGAGTGAATCTAC 59.877 40.000 0.00 0.00 34.76 2.59
1557 6318 5.247862 TGCAGAGCAAAATGAGTGAATCTA 58.752 37.500 0.00 0.00 34.76 1.98
1558 6319 4.077108 TGCAGAGCAAAATGAGTGAATCT 58.923 39.130 0.00 0.00 34.76 2.40
1559 6320 4.430137 TGCAGAGCAAAATGAGTGAATC 57.570 40.909 0.00 0.00 34.76 2.52
1560 6321 4.219944 ACATGCAGAGCAAAATGAGTGAAT 59.780 37.500 0.00 0.00 43.62 2.57
1561 6322 3.570975 ACATGCAGAGCAAAATGAGTGAA 59.429 39.130 0.00 0.00 43.62 3.18
1562 6323 3.151554 ACATGCAGAGCAAAATGAGTGA 58.848 40.909 0.00 0.00 43.62 3.41
1563 6324 3.570926 ACATGCAGAGCAAAATGAGTG 57.429 42.857 0.00 0.00 43.62 3.51
1564 6325 4.330250 ACTACATGCAGAGCAAAATGAGT 58.670 39.130 0.00 0.00 43.62 3.41
1565 6326 4.959596 ACTACATGCAGAGCAAAATGAG 57.040 40.909 0.00 0.00 43.62 2.90
1566 6327 4.761227 TGAACTACATGCAGAGCAAAATGA 59.239 37.500 0.00 0.00 43.62 2.57
1567 6328 4.855388 GTGAACTACATGCAGAGCAAAATG 59.145 41.667 0.00 0.00 43.62 2.32
1568 6329 4.520111 TGTGAACTACATGCAGAGCAAAAT 59.480 37.500 0.00 0.00 43.62 1.82
1569 6330 3.882288 TGTGAACTACATGCAGAGCAAAA 59.118 39.130 0.00 0.00 43.62 2.44
1570 6331 3.475575 TGTGAACTACATGCAGAGCAAA 58.524 40.909 0.00 0.00 43.62 3.68
1571 6332 3.124578 TGTGAACTACATGCAGAGCAA 57.875 42.857 0.00 0.00 43.62 3.91
1572 6333 2.837532 TGTGAACTACATGCAGAGCA 57.162 45.000 0.00 0.00 44.86 4.26
1616 6377 9.819267 CTCCTTATACTTTCTCCGTTTCTAAAT 57.181 33.333 0.00 0.00 0.00 1.40
1617 6378 7.763071 GCTCCTTATACTTTCTCCGTTTCTAAA 59.237 37.037 0.00 0.00 0.00 1.85
1618 6379 7.093640 TGCTCCTTATACTTTCTCCGTTTCTAA 60.094 37.037 0.00 0.00 0.00 2.10
1619 6380 6.379133 TGCTCCTTATACTTTCTCCGTTTCTA 59.621 38.462 0.00 0.00 0.00 2.10
1620 6381 5.187186 TGCTCCTTATACTTTCTCCGTTTCT 59.813 40.000 0.00 0.00 0.00 2.52
1621 6382 5.291371 GTGCTCCTTATACTTTCTCCGTTTC 59.709 44.000 0.00 0.00 0.00 2.78
1622 6383 5.046520 AGTGCTCCTTATACTTTCTCCGTTT 60.047 40.000 0.00 0.00 0.00 3.60
1623 6384 4.466726 AGTGCTCCTTATACTTTCTCCGTT 59.533 41.667 0.00 0.00 0.00 4.44
1624 6385 4.024670 AGTGCTCCTTATACTTTCTCCGT 58.975 43.478 0.00 0.00 0.00 4.69
1625 6386 4.657436 AGTGCTCCTTATACTTTCTCCG 57.343 45.455 0.00 0.00 0.00 4.63
1626 6387 5.119694 CCAAGTGCTCCTTATACTTTCTCC 58.880 45.833 0.00 0.00 32.69 3.71
1627 6388 5.119694 CCCAAGTGCTCCTTATACTTTCTC 58.880 45.833 0.00 0.00 32.69 2.87
1628 6389 4.626529 GCCCAAGTGCTCCTTATACTTTCT 60.627 45.833 0.00 0.00 32.69 2.52
1629 6390 3.628032 GCCCAAGTGCTCCTTATACTTTC 59.372 47.826 0.00 0.00 32.69 2.62
1630 6391 3.621558 GCCCAAGTGCTCCTTATACTTT 58.378 45.455 0.00 0.00 32.69 2.66
1631 6392 2.092375 GGCCCAAGTGCTCCTTATACTT 60.092 50.000 0.00 0.00 35.18 2.24
1632 6393 1.490910 GGCCCAAGTGCTCCTTATACT 59.509 52.381 0.00 0.00 0.00 2.12
1633 6394 1.477014 GGGCCCAAGTGCTCCTTATAC 60.477 57.143 19.95 0.00 0.00 1.47
1634 6395 0.843984 GGGCCCAAGTGCTCCTTATA 59.156 55.000 19.95 0.00 0.00 0.98
1635 6396 1.214305 TGGGCCCAAGTGCTCCTTAT 61.214 55.000 26.33 0.00 0.00 1.73
1643 6404 1.903404 GGTTCTGTGGGCCCAAGTG 60.903 63.158 30.64 19.59 0.00 3.16
1657 6418 4.179298 GTCCATCTACTAAACACGGGTTC 58.821 47.826 2.08 0.00 35.82 3.62
1677 6439 0.035739 TTTCAGTTAGGCCCGTGGTC 59.964 55.000 0.00 0.00 0.00 4.02
1679 6444 1.094785 CATTTCAGTTAGGCCCGTGG 58.905 55.000 0.00 0.00 0.00 4.94
1684 6449 2.223572 CGGATTGCATTTCAGTTAGGCC 60.224 50.000 0.00 0.00 0.00 5.19
1706 6471 3.446799 CAAATGAATGTTGTATGGCGGG 58.553 45.455 0.00 0.00 0.00 6.13
1735 6500 4.326826 TGCACGAGAGAAAATCCATTCTT 58.673 39.130 0.00 0.00 39.70 2.52
1789 6554 5.237996 GTGAAGACCCACCAAAAGTACTAAC 59.762 44.000 0.00 0.00 0.00 2.34
1793 6558 3.547746 TGTGAAGACCCACCAAAAGTAC 58.452 45.455 0.00 0.00 36.26 2.73
1800 6726 0.250858 CTGCATGTGAAGACCCACCA 60.251 55.000 0.00 0.00 36.26 4.17
1853 6779 6.928520 AGTTAAAATGAAAAGCATGGGAGAG 58.071 36.000 0.00 0.00 37.28 3.20
1891 7062 7.095229 TGGACTTTCGATTCAAAAGATACACTG 60.095 37.037 4.14 0.00 37.22 3.66
1994 7165 9.887406 GAACCATCGTGAAAATTTTAGAACTTA 57.113 29.630 2.75 0.00 0.00 2.24
2000 7171 8.023128 ACAGATGAACCATCGTGAAAATTTTAG 58.977 33.333 2.75 0.00 44.67 1.85
2015 7186 7.284261 TCATGTCAAGTTTTAACAGATGAACCA 59.716 33.333 0.00 0.00 0.00 3.67
2017 7188 9.121517 CATCATGTCAAGTTTTAACAGATGAAC 57.878 33.333 0.00 0.00 34.31 3.18
2039 7210 6.017211 ACATGGTGATTTTATCCCTCATCA 57.983 37.500 0.00 0.00 34.73 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.