Multiple sequence alignment - TraesCS5A01G053500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G053500 chr5A 100.000 6586 0 0 1 6586 48756764 48763349 0.000000e+00 12163.0
1 TraesCS5A01G053500 chr5D 96.062 4419 118 26 1808 6185 60246611 60251014 0.000000e+00 7145.0
2 TraesCS5A01G053500 chr5D 90.246 1220 78 21 349 1549 60245152 60246349 0.000000e+00 1555.0
3 TraesCS5A01G053500 chr5D 91.707 410 29 3 6182 6586 60251059 60251468 1.240000e-156 564.0
4 TraesCS5A01G053500 chr5B 97.565 1807 34 5 2822 4622 70400320 70398518 0.000000e+00 3085.0
5 TraesCS5A01G053500 chr5B 94.654 1590 48 9 4610 6185 70395664 70394098 0.000000e+00 2431.0
6 TraesCS5A01G053500 chr5B 89.599 1471 91 26 355 1793 70402687 70401247 0.000000e+00 1812.0
7 TraesCS5A01G053500 chr5B 95.669 762 25 3 2081 2841 70401242 70400488 0.000000e+00 1218.0
8 TraesCS5A01G053500 chr5B 89.756 410 35 5 6182 6586 70394053 70393646 9.790000e-143 518.0
9 TraesCS5A01G053500 chr2A 96.591 176 6 0 63 238 412765781 412765606 6.460000e-75 292.0
10 TraesCS5A01G053500 chr2A 93.333 60 3 1 179 238 211199802 211199860 3.270000e-13 87.9
11 TraesCS5A01G053500 chr2A 92.982 57 3 1 182 238 157134846 157134791 1.520000e-11 82.4
12 TraesCS5A01G053500 chr2A 91.667 60 4 1 179 238 283493688 283493746 1.520000e-11 82.4
13 TraesCS5A01G053500 chr2D 75.676 370 68 15 2182 2536 12636754 12636392 1.470000e-36 165.0
14 TraesCS5A01G053500 chr2D 96.875 32 1 0 2192 2223 12660255 12660224 3.000000e-03 54.7
15 TraesCS5A01G053500 chr1A 86.408 103 12 1 2434 2536 487330503 487330403 1.940000e-20 111.0
16 TraesCS5A01G053500 chr7A 94.737 57 2 1 182 238 145752805 145752750 3.270000e-13 87.9
17 TraesCS5A01G053500 chr6A 93.333 60 3 1 179 238 57440786 57440844 3.270000e-13 87.9
18 TraesCS5A01G053500 chr6A 77.519 129 17 8 2100 2223 462215341 462215220 4.260000e-07 67.6
19 TraesCS5A01G053500 chr4D 94.737 57 2 1 182 238 177652620 177652565 3.270000e-13 87.9
20 TraesCS5A01G053500 chr3B 90.476 63 4 2 176 238 781654431 781654491 1.520000e-11 82.4
21 TraesCS5A01G053500 chr4B 86.667 75 7 3 164 236 315857461 315857534 5.470000e-11 80.5
22 TraesCS5A01G053500 chr2B 86.567 67 7 2 2470 2536 39192989 39193053 9.160000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G053500 chr5A 48756764 48763349 6585 False 12163.0 12163 100.000000 1 6586 1 chr5A.!!$F1 6585
1 TraesCS5A01G053500 chr5D 60245152 60251468 6316 False 3088.0 7145 92.671667 349 6586 3 chr5D.!!$F1 6237
2 TraesCS5A01G053500 chr5B 70393646 70402687 9041 True 1812.8 3085 93.448600 355 6586 5 chr5B.!!$R1 6231

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
978 995 0.107214 TCTTCGGCCCATTAAGCAGG 60.107 55.000 0.00 0.0 0.00 4.85 F
1574 1630 0.096976 CAAGTAGGATTTGCGGCGTG 59.903 55.000 9.37 0.0 0.00 5.34 F
1857 1952 0.472471 ATGGGTTTGAGTGTGTCGGT 59.528 50.000 0.00 0.0 0.00 4.69 F
2158 2261 0.555769 TGAAACCCTTGTTCTGGCCT 59.444 50.000 3.32 0.0 32.15 5.19 F
2294 2397 1.827399 TTTCCTGACTGTCTCCGGCC 61.827 60.000 9.51 0.0 0.00 6.13 F
2506 2609 5.586243 GTGTGCATAACAATGATGTAGAGGT 59.414 40.000 0.00 0.0 41.57 3.85 F
3639 3932 3.288092 GTTTTGGAGGTGTGGTTTCTCT 58.712 45.455 0.00 0.0 0.00 3.10 F
5304 8475 1.274703 TTTAGCTGAGGCCCTGGAGG 61.275 60.000 0.00 0.0 39.73 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2223 2326 0.035152 TGAAGACCAGCATCGGCAAT 60.035 50.000 0.00 0.0 44.61 3.56 R
2506 2609 1.770061 ACAGGGTGTTAAAACCTCCGA 59.230 47.619 14.65 0.0 40.35 4.55 R
2954 3245 3.058016 GCACAGAAACAGAGCAAGCATAA 60.058 43.478 0.00 0.0 0.00 1.90 R
3254 3545 3.117738 AGGATTCTTGCACCCTTGATAGG 60.118 47.826 0.00 0.0 41.60 2.57 R
3374 3665 4.380867 CCTTTACGCCAATGCTGAATTCTT 60.381 41.667 7.05 0.0 34.43 2.52 R
3709 4002 5.652891 AGGAGTCTAATAGTGTCACATTCGT 59.347 40.000 5.62 0.0 0.00 3.85 R
5308 8479 0.112995 AGTGGCTGGCTCCAATGAAA 59.887 50.000 2.00 0.0 37.96 2.69 R
6566 9810 0.101040 TTTGCTGCTGTTCTGTGTGC 59.899 50.000 0.00 0.0 0.00 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 4.489771 GATGGCCGGTGGGGAGTG 62.490 72.222 1.90 0.00 38.47 3.51
84 85 3.637273 GCCGGTGGGGAGTGAGTT 61.637 66.667 1.90 0.00 38.47 3.01
85 86 3.157680 CCGGTGGGGAGTGAGTTT 58.842 61.111 0.00 0.00 38.47 2.66
86 87 1.454539 CCGGTGGGGAGTGAGTTTT 59.545 57.895 0.00 0.00 38.47 2.43
87 88 0.889186 CCGGTGGGGAGTGAGTTTTG 60.889 60.000 0.00 0.00 38.47 2.44
88 89 1.515521 CGGTGGGGAGTGAGTTTTGC 61.516 60.000 0.00 0.00 0.00 3.68
89 90 1.179174 GGTGGGGAGTGAGTTTTGCC 61.179 60.000 0.00 0.00 0.00 4.52
90 91 1.228124 TGGGGAGTGAGTTTTGCCG 60.228 57.895 0.00 0.00 0.00 5.69
91 92 1.072505 GGGGAGTGAGTTTTGCCGA 59.927 57.895 0.00 0.00 0.00 5.54
92 93 0.322546 GGGGAGTGAGTTTTGCCGAT 60.323 55.000 0.00 0.00 0.00 4.18
93 94 1.065709 GGGGAGTGAGTTTTGCCGATA 60.066 52.381 0.00 0.00 0.00 2.92
94 95 2.617021 GGGGAGTGAGTTTTGCCGATAA 60.617 50.000 0.00 0.00 0.00 1.75
95 96 2.678336 GGGAGTGAGTTTTGCCGATAAG 59.322 50.000 0.00 0.00 0.00 1.73
96 97 3.596214 GGAGTGAGTTTTGCCGATAAGA 58.404 45.455 0.00 0.00 0.00 2.10
97 98 3.619038 GGAGTGAGTTTTGCCGATAAGAG 59.381 47.826 0.00 0.00 0.00 2.85
98 99 3.600388 AGTGAGTTTTGCCGATAAGAGG 58.400 45.455 0.00 0.00 0.00 3.69
99 100 2.678336 GTGAGTTTTGCCGATAAGAGGG 59.322 50.000 0.00 0.00 0.00 4.30
100 101 2.569853 TGAGTTTTGCCGATAAGAGGGA 59.430 45.455 0.00 0.00 0.00 4.20
101 102 3.198872 GAGTTTTGCCGATAAGAGGGAG 58.801 50.000 0.00 0.00 0.00 4.30
102 103 2.092914 AGTTTTGCCGATAAGAGGGAGG 60.093 50.000 0.00 0.00 0.00 4.30
103 104 0.837272 TTTGCCGATAAGAGGGAGGG 59.163 55.000 0.00 0.00 0.00 4.30
104 105 1.054406 TTGCCGATAAGAGGGAGGGG 61.054 60.000 0.00 0.00 0.00 4.79
105 106 1.152312 GCCGATAAGAGGGAGGGGA 60.152 63.158 0.00 0.00 0.00 4.81
106 107 1.473497 GCCGATAAGAGGGAGGGGAC 61.473 65.000 0.00 0.00 0.00 4.46
107 108 1.179814 CCGATAAGAGGGAGGGGACG 61.180 65.000 0.00 0.00 0.00 4.79
108 109 0.178998 CGATAAGAGGGAGGGGACGA 60.179 60.000 0.00 0.00 0.00 4.20
109 110 1.623163 GATAAGAGGGAGGGGACGAG 58.377 60.000 0.00 0.00 0.00 4.18
110 111 0.188834 ATAAGAGGGAGGGGACGAGG 59.811 60.000 0.00 0.00 0.00 4.63
111 112 1.219824 TAAGAGGGAGGGGACGAGGT 61.220 60.000 0.00 0.00 0.00 3.85
112 113 2.760385 GAGGGAGGGGACGAGGTG 60.760 72.222 0.00 0.00 0.00 4.00
113 114 4.400251 AGGGAGGGGACGAGGTGG 62.400 72.222 0.00 0.00 0.00 4.61
114 115 4.716977 GGGAGGGGACGAGGTGGT 62.717 72.222 0.00 0.00 0.00 4.16
115 116 3.391382 GGAGGGGACGAGGTGGTG 61.391 72.222 0.00 0.00 0.00 4.17
116 117 3.391382 GAGGGGACGAGGTGGTGG 61.391 72.222 0.00 0.00 0.00 4.61
120 121 4.016706 GGACGAGGTGGTGGGGTG 62.017 72.222 0.00 0.00 0.00 4.61
121 122 4.016706 GACGAGGTGGTGGGGTGG 62.017 72.222 0.00 0.00 0.00 4.61
148 149 3.422122 GCTTTTGCATGCGGATTGA 57.578 47.368 14.09 0.00 46.58 2.57
149 150 1.712401 GCTTTTGCATGCGGATTGAA 58.288 45.000 14.09 0.00 46.58 2.69
150 151 1.657094 GCTTTTGCATGCGGATTGAAG 59.343 47.619 14.09 10.86 46.58 3.02
151 152 2.927871 GCTTTTGCATGCGGATTGAAGT 60.928 45.455 14.09 0.00 46.58 3.01
152 153 3.319755 CTTTTGCATGCGGATTGAAGTT 58.680 40.909 14.09 0.00 0.00 2.66
153 154 3.383620 TTTGCATGCGGATTGAAGTTT 57.616 38.095 14.09 0.00 0.00 2.66
154 155 2.634982 TGCATGCGGATTGAAGTTTC 57.365 45.000 14.09 0.00 0.00 2.78
155 156 2.161855 TGCATGCGGATTGAAGTTTCT 58.838 42.857 14.09 0.00 0.00 2.52
156 157 2.162208 TGCATGCGGATTGAAGTTTCTC 59.838 45.455 14.09 0.00 0.00 2.87
157 158 2.478539 GCATGCGGATTGAAGTTTCTCC 60.479 50.000 0.00 0.00 0.00 3.71
160 161 2.380084 CGGATTGAAGTTTCTCCGGA 57.620 50.000 2.93 2.93 45.30 5.14
161 162 2.906354 CGGATTGAAGTTTCTCCGGAT 58.094 47.619 3.57 0.00 45.30 4.18
162 163 4.054780 CGGATTGAAGTTTCTCCGGATA 57.945 45.455 3.57 0.00 45.30 2.59
163 164 4.051922 CGGATTGAAGTTTCTCCGGATAG 58.948 47.826 3.57 0.00 45.30 2.08
164 165 4.381411 GGATTGAAGTTTCTCCGGATAGG 58.619 47.826 3.57 0.00 42.97 2.57
165 166 3.906720 TTGAAGTTTCTCCGGATAGGG 57.093 47.619 3.57 0.00 41.52 3.53
166 167 3.110293 TGAAGTTTCTCCGGATAGGGA 57.890 47.619 3.57 0.00 41.52 4.20
167 168 3.446968 TGAAGTTTCTCCGGATAGGGAA 58.553 45.455 3.57 1.36 41.52 3.97
168 169 4.037927 TGAAGTTTCTCCGGATAGGGAAT 58.962 43.478 3.57 0.00 41.52 3.01
169 170 4.473559 TGAAGTTTCTCCGGATAGGGAATT 59.526 41.667 3.57 0.00 41.52 2.17
170 171 5.045140 TGAAGTTTCTCCGGATAGGGAATTT 60.045 40.000 3.57 0.00 41.52 1.82
171 172 4.781934 AGTTTCTCCGGATAGGGAATTTG 58.218 43.478 3.57 0.00 41.52 2.32
172 173 2.930826 TCTCCGGATAGGGAATTTGC 57.069 50.000 3.57 0.00 41.52 3.68
173 174 2.123589 TCTCCGGATAGGGAATTTGCA 58.876 47.619 3.57 0.00 41.52 4.08
174 175 2.711009 TCTCCGGATAGGGAATTTGCAT 59.289 45.455 3.57 0.00 41.52 3.96
175 176 3.907474 TCTCCGGATAGGGAATTTGCATA 59.093 43.478 3.57 0.00 41.52 3.14
176 177 4.536090 TCTCCGGATAGGGAATTTGCATAT 59.464 41.667 3.57 0.00 41.52 1.78
177 178 5.014123 TCTCCGGATAGGGAATTTGCATATT 59.986 40.000 3.57 1.69 41.52 1.28
178 179 5.009631 TCCGGATAGGGAATTTGCATATTG 58.990 41.667 7.14 0.00 41.52 1.90
179 180 4.380867 CCGGATAGGGAATTTGCATATTGC 60.381 45.833 11.96 11.96 39.26 3.56
180 181 4.460382 CGGATAGGGAATTTGCATATTGCT 59.540 41.667 18.01 9.03 45.31 3.91
181 182 5.047802 CGGATAGGGAATTTGCATATTGCTT 60.048 40.000 18.01 14.23 45.31 3.91
182 183 6.393171 GGATAGGGAATTTGCATATTGCTTC 58.607 40.000 18.01 13.01 45.31 3.86
183 184 6.210185 GGATAGGGAATTTGCATATTGCTTCT 59.790 38.462 18.01 11.54 45.31 2.85
184 185 7.394359 GGATAGGGAATTTGCATATTGCTTCTA 59.606 37.037 18.01 12.97 45.31 2.10
185 186 8.890410 ATAGGGAATTTGCATATTGCTTCTAT 57.110 30.769 18.01 14.26 45.31 1.98
186 187 9.979897 ATAGGGAATTTGCATATTGCTTCTATA 57.020 29.630 18.01 7.09 45.31 1.31
187 188 8.890410 AGGGAATTTGCATATTGCTTCTATAT 57.110 30.769 18.01 0.00 45.31 0.86
188 189 9.979897 AGGGAATTTGCATATTGCTTCTATATA 57.020 29.630 18.01 0.00 45.31 0.86
193 194 8.498054 TTTGCATATTGCTTCTATATAGAGCC 57.502 34.615 21.41 14.14 45.31 4.70
194 195 6.586344 TGCATATTGCTTCTATATAGAGCCC 58.414 40.000 21.41 12.37 45.31 5.19
195 196 5.694006 GCATATTGCTTCTATATAGAGCCCG 59.306 44.000 21.41 11.26 40.96 6.13
196 197 6.461648 GCATATTGCTTCTATATAGAGCCCGA 60.462 42.308 21.41 12.09 40.96 5.14
197 198 7.665690 CATATTGCTTCTATATAGAGCCCGAT 58.334 38.462 21.41 16.17 33.21 4.18
198 199 4.991153 TGCTTCTATATAGAGCCCGATG 57.009 45.455 21.41 8.25 33.21 3.84
199 200 3.701542 TGCTTCTATATAGAGCCCGATGG 59.298 47.826 21.41 7.29 33.21 3.51
200 201 3.702045 GCTTCTATATAGAGCCCGATGGT 59.298 47.826 12.16 0.00 33.21 3.55
201 202 4.888239 GCTTCTATATAGAGCCCGATGGTA 59.112 45.833 12.16 0.00 33.21 3.25
202 203 5.360144 GCTTCTATATAGAGCCCGATGGTAA 59.640 44.000 12.16 0.00 33.21 2.85
203 204 6.680872 GCTTCTATATAGAGCCCGATGGTAAC 60.681 46.154 12.16 0.00 33.21 2.50
204 205 6.250711 TTCTATATAGAGCCCGATGGTAACA 58.749 40.000 12.16 0.00 42.31 2.41
205 206 6.377429 TTCTATATAGAGCCCGATGGTAACAG 59.623 42.308 12.16 0.00 41.68 3.16
206 207 7.748235 TTCTATATAGAGCCCGATGGTAACAGA 60.748 40.741 12.16 0.00 41.68 3.41
240 241 5.527033 GTTACTAGTAACAGAATAGCCGGG 58.473 45.833 31.74 0.00 43.55 5.73
241 242 3.639952 ACTAGTAACAGAATAGCCGGGT 58.360 45.455 12.58 12.58 0.00 5.28
242 243 2.981859 AGTAACAGAATAGCCGGGTG 57.018 50.000 18.40 0.49 0.00 4.61
243 244 2.185387 AGTAACAGAATAGCCGGGTGT 58.815 47.619 18.40 6.79 0.00 4.16
244 245 2.570302 AGTAACAGAATAGCCGGGTGTT 59.430 45.455 18.40 17.14 35.56 3.32
245 246 1.821216 AACAGAATAGCCGGGTGTTG 58.179 50.000 20.95 10.36 30.25 3.33
246 247 0.676782 ACAGAATAGCCGGGTGTTGC 60.677 55.000 20.95 11.62 0.00 4.17
247 248 1.077716 AGAATAGCCGGGTGTTGCC 60.078 57.895 20.95 7.04 0.00 4.52
248 249 1.377987 GAATAGCCGGGTGTTGCCA 60.378 57.895 20.95 0.00 39.65 4.92
249 250 1.376609 GAATAGCCGGGTGTTGCCAG 61.377 60.000 20.95 0.00 39.65 4.85
250 251 1.847798 AATAGCCGGGTGTTGCCAGA 61.848 55.000 18.40 0.00 39.65 3.86
251 252 2.536997 ATAGCCGGGTGTTGCCAGAC 62.537 60.000 18.40 0.00 39.65 3.51
252 253 4.947147 GCCGGGTGTTGCCAGACA 62.947 66.667 2.18 0.00 39.65 3.41
253 254 2.203280 CCGGGTGTTGCCAGACAA 60.203 61.111 0.00 0.00 39.65 3.18
254 255 1.826054 CCGGGTGTTGCCAGACAAA 60.826 57.895 0.00 0.00 40.82 2.83
255 256 1.388065 CCGGGTGTTGCCAGACAAAA 61.388 55.000 0.00 0.00 40.82 2.44
256 257 0.248866 CGGGTGTTGCCAGACAAAAC 60.249 55.000 0.00 0.00 44.61 2.43
258 259 3.250220 GTGTTGCCAGACAAAACCG 57.750 52.632 0.00 0.00 40.17 4.44
259 260 0.454196 GTGTTGCCAGACAAAACCGT 59.546 50.000 0.00 0.00 40.17 4.83
260 261 1.671845 GTGTTGCCAGACAAAACCGTA 59.328 47.619 0.00 0.00 40.17 4.02
261 262 1.944024 TGTTGCCAGACAAAACCGTAG 59.056 47.619 0.00 0.00 40.82 3.51
262 263 1.600023 TTGCCAGACAAAACCGTAGG 58.400 50.000 0.00 0.00 46.13 3.18
263 264 1.816183 TTGCCAGACAAAACCGTAGGG 60.816 52.381 0.00 0.00 45.22 3.53
274 275 2.433664 CGTAGGGTTGGTGACGGC 60.434 66.667 0.00 0.00 0.00 5.68
275 276 2.433664 GTAGGGTTGGTGACGGCG 60.434 66.667 4.80 4.80 0.00 6.46
276 277 3.697747 TAGGGTTGGTGACGGCGG 61.698 66.667 13.24 0.00 0.00 6.13
289 290 3.766691 GGCGGCGGACTGGTAGAA 61.767 66.667 9.78 0.00 0.00 2.10
290 291 2.202756 GCGGCGGACTGGTAGAAG 60.203 66.667 9.78 0.00 0.00 2.85
291 292 3.003113 GCGGCGGACTGGTAGAAGT 62.003 63.158 9.78 0.00 0.00 3.01
292 293 1.590147 CGGCGGACTGGTAGAAGTT 59.410 57.895 0.00 0.00 0.00 2.66
293 294 0.736325 CGGCGGACTGGTAGAAGTTG 60.736 60.000 0.00 0.00 0.00 3.16
294 295 0.391263 GGCGGACTGGTAGAAGTTGG 60.391 60.000 0.00 0.00 0.00 3.77
295 296 0.391263 GCGGACTGGTAGAAGTTGGG 60.391 60.000 0.00 0.00 0.00 4.12
296 297 0.391263 CGGACTGGTAGAAGTTGGGC 60.391 60.000 0.00 0.00 0.00 5.36
297 298 0.984995 GGACTGGTAGAAGTTGGGCT 59.015 55.000 0.00 0.00 0.00 5.19
298 299 2.185387 GGACTGGTAGAAGTTGGGCTA 58.815 52.381 0.00 0.00 0.00 3.93
299 300 2.570302 GGACTGGTAGAAGTTGGGCTAA 59.430 50.000 0.00 0.00 0.00 3.09
300 301 3.597255 GACTGGTAGAAGTTGGGCTAAC 58.403 50.000 5.49 5.49 39.65 2.34
301 302 2.028385 ACTGGTAGAAGTTGGGCTAACG 60.028 50.000 8.14 0.00 44.15 3.18
302 303 1.338389 TGGTAGAAGTTGGGCTAACGC 60.338 52.381 8.14 4.95 44.15 4.84
303 304 1.338389 GGTAGAAGTTGGGCTAACGCA 60.338 52.381 8.14 0.00 44.15 5.24
304 305 2.419667 GTAGAAGTTGGGCTAACGCAA 58.580 47.619 8.14 0.00 45.50 4.85
308 309 4.911901 TTGGGCTAACGCAAGGTT 57.088 50.000 0.00 0.00 43.13 3.50
309 310 3.119225 TTGGGCTAACGCAAGGTTT 57.881 47.368 0.00 0.00 43.13 3.27
310 311 0.671251 TTGGGCTAACGCAAGGTTTG 59.329 50.000 0.00 0.00 43.13 2.93
311 312 1.175983 TGGGCTAACGCAAGGTTTGG 61.176 55.000 0.00 0.00 46.39 3.28
312 313 0.891904 GGGCTAACGCAAGGTTTGGA 60.892 55.000 0.00 0.00 46.39 3.53
313 314 0.240145 GGCTAACGCAAGGTTTGGAC 59.760 55.000 0.00 0.00 46.39 4.02
314 315 0.110373 GCTAACGCAAGGTTTGGACG 60.110 55.000 0.00 0.00 46.39 4.79
315 316 0.515564 CTAACGCAAGGTTTGGACGG 59.484 55.000 0.00 0.00 46.39 4.79
316 317 0.885596 TAACGCAAGGTTTGGACGGG 60.886 55.000 0.00 0.00 46.39 5.28
317 318 2.281208 CGCAAGGTTTGGACGGGA 60.281 61.111 0.00 0.00 0.00 5.14
318 319 1.894756 CGCAAGGTTTGGACGGGAA 60.895 57.895 0.00 0.00 0.00 3.97
319 320 1.448922 CGCAAGGTTTGGACGGGAAA 61.449 55.000 0.00 0.00 0.00 3.13
320 321 0.313987 GCAAGGTTTGGACGGGAAAG 59.686 55.000 0.00 0.00 0.00 2.62
321 322 0.958822 CAAGGTTTGGACGGGAAAGG 59.041 55.000 0.00 0.00 0.00 3.11
322 323 0.554305 AAGGTTTGGACGGGAAAGGT 59.446 50.000 0.00 0.00 0.00 3.50
323 324 1.437397 AGGTTTGGACGGGAAAGGTA 58.563 50.000 0.00 0.00 0.00 3.08
324 325 1.990327 AGGTTTGGACGGGAAAGGTAT 59.010 47.619 0.00 0.00 0.00 2.73
325 326 2.026542 AGGTTTGGACGGGAAAGGTATC 60.027 50.000 0.00 0.00 0.00 2.24
326 327 2.026542 GGTTTGGACGGGAAAGGTATCT 60.027 50.000 0.00 0.00 0.00 1.98
327 328 3.560668 GGTTTGGACGGGAAAGGTATCTT 60.561 47.826 0.00 0.00 34.07 2.40
328 329 4.323715 GGTTTGGACGGGAAAGGTATCTTA 60.324 45.833 0.00 0.00 32.01 2.10
329 330 4.748277 TTGGACGGGAAAGGTATCTTAG 57.252 45.455 0.00 0.00 32.01 2.18
330 331 3.716431 TGGACGGGAAAGGTATCTTAGT 58.284 45.455 0.00 0.00 32.01 2.24
331 332 4.098894 TGGACGGGAAAGGTATCTTAGTT 58.901 43.478 0.00 0.00 32.01 2.24
332 333 4.081309 TGGACGGGAAAGGTATCTTAGTTG 60.081 45.833 0.00 0.00 32.01 3.16
333 334 3.869832 GACGGGAAAGGTATCTTAGTTGC 59.130 47.826 0.00 0.00 32.01 4.17
334 335 2.864343 CGGGAAAGGTATCTTAGTTGCG 59.136 50.000 0.00 0.00 32.01 4.85
335 336 3.677976 CGGGAAAGGTATCTTAGTTGCGT 60.678 47.826 0.00 0.00 32.01 5.24
336 337 3.869832 GGGAAAGGTATCTTAGTTGCGTC 59.130 47.826 0.00 0.00 32.01 5.19
337 338 3.869832 GGAAAGGTATCTTAGTTGCGTCC 59.130 47.826 0.00 0.00 32.01 4.79
338 339 3.538634 AAGGTATCTTAGTTGCGTCCC 57.461 47.619 0.00 0.00 0.00 4.46
339 340 1.761198 AGGTATCTTAGTTGCGTCCCC 59.239 52.381 0.00 0.00 0.00 4.81
340 341 1.761198 GGTATCTTAGTTGCGTCCCCT 59.239 52.381 0.00 0.00 0.00 4.79
341 342 2.169978 GGTATCTTAGTTGCGTCCCCTT 59.830 50.000 0.00 0.00 0.00 3.95
342 343 3.370209 GGTATCTTAGTTGCGTCCCCTTT 60.370 47.826 0.00 0.00 0.00 3.11
343 344 2.943036 TCTTAGTTGCGTCCCCTTTT 57.057 45.000 0.00 0.00 0.00 2.27
344 345 3.217681 TCTTAGTTGCGTCCCCTTTTT 57.782 42.857 0.00 0.00 0.00 1.94
370 371 6.042777 GGTTTCCCTTTTTCTCTTTCACTTG 58.957 40.000 0.00 0.00 0.00 3.16
609 622 9.683069 AAATCACACACACATCTTCTTAAAATC 57.317 29.630 0.00 0.00 0.00 2.17
620 633 9.612620 ACATCTTCTTAAAATCGTTCAACATTC 57.387 29.630 0.00 0.00 0.00 2.67
632 645 8.874745 ATCGTTCAACATTCTTTTAATACACG 57.125 30.769 0.00 0.00 0.00 4.49
634 647 8.218441 TCGTTCAACATTCTTTTAATACACGAG 58.782 33.333 0.00 0.00 0.00 4.18
711 725 6.869421 ATATGCAAACATCGTTTAAAGCAC 57.131 33.333 0.00 0.00 37.74 4.40
715 729 4.663889 GCAAACATCGTTTAAAGCACATGC 60.664 41.667 0.00 0.00 42.49 4.06
927 944 9.979578 ACATTTTCAACAATAAATTCTACTGCA 57.020 25.926 0.00 0.00 0.00 4.41
962 979 4.269183 TGTGAAATTGACCACACTGTCTT 58.731 39.130 0.00 0.00 38.26 3.01
978 995 0.107214 TCTTCGGCCCATTAAGCAGG 60.107 55.000 0.00 0.00 0.00 4.85
1127 1155 4.657824 CCACGTCGCCGGTGTTCT 62.658 66.667 16.01 0.00 38.78 3.01
1206 1235 2.182030 CTCGTTCCTCACCTCGGC 59.818 66.667 0.00 0.00 0.00 5.54
1521 1550 1.623542 CCTACCCGTAAGCAGCCCTT 61.624 60.000 0.00 0.00 37.57 3.95
1549 1605 0.678048 ATTCCTCCGCAAGAAGCACC 60.678 55.000 0.00 0.00 46.13 5.01
1550 1606 2.032528 CCTCCGCAAGAAGCACCA 59.967 61.111 0.00 0.00 46.13 4.17
1551 1607 2.328099 CCTCCGCAAGAAGCACCAC 61.328 63.158 0.00 0.00 46.13 4.16
1552 1608 2.281484 TCCGCAAGAAGCACCACC 60.281 61.111 0.00 0.00 46.13 4.61
1553 1609 2.594303 CCGCAAGAAGCACCACCA 60.594 61.111 0.00 0.00 46.13 4.17
1554 1610 2.192861 CCGCAAGAAGCACCACCAA 61.193 57.895 0.00 0.00 46.13 3.67
1555 1611 1.008538 CGCAAGAAGCACCACCAAC 60.009 57.895 0.00 0.00 46.13 3.77
1556 1612 1.723608 CGCAAGAAGCACCACCAACA 61.724 55.000 0.00 0.00 46.13 3.33
1557 1613 0.459489 GCAAGAAGCACCACCAACAA 59.541 50.000 0.00 0.00 44.79 2.83
1558 1614 1.536709 GCAAGAAGCACCACCAACAAG 60.537 52.381 0.00 0.00 44.79 3.16
1559 1615 1.750778 CAAGAAGCACCACCAACAAGT 59.249 47.619 0.00 0.00 0.00 3.16
1560 1616 2.948979 CAAGAAGCACCACCAACAAGTA 59.051 45.455 0.00 0.00 0.00 2.24
1561 1617 2.851195 AGAAGCACCACCAACAAGTAG 58.149 47.619 0.00 0.00 0.00 2.57
1562 1618 1.880027 GAAGCACCACCAACAAGTAGG 59.120 52.381 0.00 0.00 0.00 3.18
1563 1619 1.136828 AGCACCACCAACAAGTAGGA 58.863 50.000 0.00 0.00 0.00 2.94
1564 1620 1.705186 AGCACCACCAACAAGTAGGAT 59.295 47.619 0.00 0.00 0.00 3.24
1565 1621 2.108250 AGCACCACCAACAAGTAGGATT 59.892 45.455 0.00 0.00 0.00 3.01
1566 1622 2.890945 GCACCACCAACAAGTAGGATTT 59.109 45.455 0.00 0.00 0.00 2.17
1567 1623 3.305335 GCACCACCAACAAGTAGGATTTG 60.305 47.826 0.00 0.00 0.00 2.32
1568 1624 2.890945 ACCACCAACAAGTAGGATTTGC 59.109 45.455 0.00 0.00 0.00 3.68
1569 1625 2.095263 CCACCAACAAGTAGGATTTGCG 60.095 50.000 0.00 0.00 0.00 4.85
1570 1626 2.095263 CACCAACAAGTAGGATTTGCGG 60.095 50.000 0.00 0.00 0.00 5.69
1571 1627 1.135402 CCAACAAGTAGGATTTGCGGC 60.135 52.381 0.00 0.00 0.00 6.53
1572 1628 0.802494 AACAAGTAGGATTTGCGGCG 59.198 50.000 0.51 0.51 0.00 6.46
1573 1629 0.321298 ACAAGTAGGATTTGCGGCGT 60.321 50.000 9.37 0.00 0.00 5.68
1574 1630 0.096976 CAAGTAGGATTTGCGGCGTG 59.903 55.000 9.37 0.00 0.00 5.34
1575 1631 1.024579 AAGTAGGATTTGCGGCGTGG 61.025 55.000 9.37 0.00 0.00 4.94
1576 1632 1.743995 GTAGGATTTGCGGCGTGGT 60.744 57.895 9.37 0.00 0.00 4.16
1577 1633 1.743623 TAGGATTTGCGGCGTGGTG 60.744 57.895 9.37 0.00 0.00 4.17
1578 1634 4.776647 GGATTTGCGGCGTGGTGC 62.777 66.667 9.37 0.00 45.38 5.01
1579 1635 3.737172 GATTTGCGGCGTGGTGCT 61.737 61.111 9.37 0.00 45.43 4.40
1580 1636 3.267597 GATTTGCGGCGTGGTGCTT 62.268 57.895 9.37 0.00 45.43 3.91
1599 1655 2.772568 TTGTCAAACATCTTGTGCGG 57.227 45.000 0.00 0.00 0.00 5.69
1606 1662 1.800805 ACATCTTGTGCGGACTGAAG 58.199 50.000 8.99 4.66 0.00 3.02
1655 1714 4.864334 GAGCGGTGGCCCATCAGG 62.864 72.222 0.00 0.00 41.24 3.86
1673 1732 1.002366 GGCTATGTCTTGTGTGCTCG 58.998 55.000 0.00 0.00 0.00 5.03
1674 1733 1.673033 GGCTATGTCTTGTGTGCTCGT 60.673 52.381 0.00 0.00 0.00 4.18
1726 1785 5.106673 GCATAAACGAAACTTTGCTACTCCT 60.107 40.000 0.00 0.00 0.00 3.69
1730 1789 3.808174 ACGAAACTTTGCTACTCCTGTTC 59.192 43.478 0.00 0.00 0.00 3.18
1733 1792 4.689612 AACTTTGCTACTCCTGTTCTGA 57.310 40.909 0.00 0.00 0.00 3.27
1741 1800 4.323104 GCTACTCCTGTTCTGAGGAAATGT 60.323 45.833 0.00 0.00 41.81 2.71
1782 1841 4.872124 GGTATGTAGGTGGACCTTTTTACG 59.128 45.833 3.03 0.00 46.09 3.18
1786 1845 1.418637 AGGTGGACCTTTTTACGCTGA 59.581 47.619 0.00 0.00 46.09 4.26
1788 1847 2.418976 GGTGGACCTTTTTACGCTGATC 59.581 50.000 0.00 0.00 0.00 2.92
1804 1863 4.900182 CGCTGATCATGTTTAGCAAATACG 59.100 41.667 17.66 0.52 35.98 3.06
1805 1864 4.672413 GCTGATCATGTTTAGCAAATACGC 59.328 41.667 13.95 0.00 36.24 4.42
1806 1865 5.504665 GCTGATCATGTTTAGCAAATACGCT 60.505 40.000 13.95 0.00 46.26 5.07
1810 1903 5.179533 TCATGTTTAGCAAATACGCTGGTA 58.820 37.500 0.00 0.00 43.68 3.25
1827 1920 0.521735 GTAAGAAAGGGCGGCACAAG 59.478 55.000 12.47 0.00 0.00 3.16
1847 1942 0.888736 CACCGTGCTGATGGGTTTGA 60.889 55.000 0.00 0.00 31.60 2.69
1848 1943 0.606401 ACCGTGCTGATGGGTTTGAG 60.606 55.000 0.00 0.00 31.60 3.02
1849 1944 0.606401 CCGTGCTGATGGGTTTGAGT 60.606 55.000 0.00 0.00 0.00 3.41
1850 1945 0.518636 CGTGCTGATGGGTTTGAGTG 59.481 55.000 0.00 0.00 0.00 3.51
1851 1946 1.609208 GTGCTGATGGGTTTGAGTGT 58.391 50.000 0.00 0.00 0.00 3.55
1852 1947 1.267806 GTGCTGATGGGTTTGAGTGTG 59.732 52.381 0.00 0.00 0.00 3.82
1853 1948 1.133823 TGCTGATGGGTTTGAGTGTGT 60.134 47.619 0.00 0.00 0.00 3.72
1855 1950 1.800586 CTGATGGGTTTGAGTGTGTCG 59.199 52.381 0.00 0.00 0.00 4.35
1857 1952 0.472471 ATGGGTTTGAGTGTGTCGGT 59.528 50.000 0.00 0.00 0.00 4.69
1897 1993 1.315690 CAGGGTGGCATATGCTTCTG 58.684 55.000 26.12 21.19 41.70 3.02
1898 1994 0.921896 AGGGTGGCATATGCTTCTGT 59.078 50.000 26.12 7.08 41.70 3.41
1904 2000 2.749076 TGGCATATGCTTCTGTTCACAC 59.251 45.455 26.12 6.45 41.70 3.82
1911 2007 1.338200 GCTTCTGTTCACACGGAGGAT 60.338 52.381 0.00 0.00 39.59 3.24
2005 2102 2.971598 AACATGACTGGCCTCCCGG 61.972 63.158 3.32 0.00 43.59 5.73
2011 2108 4.394712 CTGGCCTCCCGGTGTGAC 62.395 72.222 3.32 0.00 32.47 3.67
2053 2156 2.709475 CATTTGGTAGCGCCGCTC 59.291 61.111 18.06 7.50 40.44 5.03
2054 2157 2.106074 CATTTGGTAGCGCCGCTCA 61.106 57.895 18.06 5.41 40.44 4.26
2077 2180 3.265791 GACTGCCATGGAGTTCTAACTG 58.734 50.000 18.40 1.40 39.88 3.16
2079 2182 1.340017 TGCCATGGAGTTCTAACTGGC 60.340 52.381 18.40 13.91 43.14 4.85
2139 2242 1.988107 ACACCACTTCATGTCTGGGAT 59.012 47.619 9.79 0.00 0.00 3.85
2140 2243 2.290514 ACACCACTTCATGTCTGGGATG 60.291 50.000 9.79 4.17 0.00 3.51
2141 2244 2.026915 CACCACTTCATGTCTGGGATGA 60.027 50.000 9.79 0.00 0.00 2.92
2142 2245 2.644299 ACCACTTCATGTCTGGGATGAA 59.356 45.455 9.79 0.00 37.46 2.57
2143 2246 3.074390 ACCACTTCATGTCTGGGATGAAA 59.926 43.478 9.79 0.00 38.92 2.69
2144 2247 3.441572 CCACTTCATGTCTGGGATGAAAC 59.558 47.826 0.00 0.00 38.92 2.78
2155 2258 2.171003 GGGATGAAACCCTTGTTCTGG 58.829 52.381 0.00 0.00 45.90 3.86
2156 2259 1.546029 GGATGAAACCCTTGTTCTGGC 59.454 52.381 0.00 0.00 32.15 4.85
2158 2261 0.555769 TGAAACCCTTGTTCTGGCCT 59.444 50.000 3.32 0.00 32.15 5.19
2163 2266 3.542969 ACCCTTGTTCTGGCCTTTATT 57.457 42.857 3.32 0.00 0.00 1.40
2180 2283 7.202001 GGCCTTTATTTATTGATTGGGCTTAGT 60.202 37.037 0.00 0.00 37.47 2.24
2209 2312 4.549489 CGAAGTTGTGTCGTTACCTTGTTC 60.549 45.833 0.00 0.00 33.80 3.18
2223 2326 3.278574 CCTTGTTCAAGGTGTTGTCTCA 58.721 45.455 19.86 0.00 35.22 3.27
2256 2359 2.540973 GGTCTTCAGTGTTTGGTTTCGC 60.541 50.000 0.00 0.00 0.00 4.70
2294 2397 1.827399 TTTCCTGACTGTCTCCGGCC 61.827 60.000 9.51 0.00 0.00 6.13
2506 2609 5.586243 GTGTGCATAACAATGATGTAGAGGT 59.414 40.000 0.00 0.00 41.57 3.85
3536 3829 7.147983 GCAGGATCTTTAGTTAGTTCTCTCAGA 60.148 40.741 0.00 0.00 0.00 3.27
3639 3932 3.288092 GTTTTGGAGGTGTGGTTTCTCT 58.712 45.455 0.00 0.00 0.00 3.10
3655 3948 8.784043 GTGGTTTCTCTACTTTACATTTCATGT 58.216 33.333 0.00 0.00 46.92 3.21
3908 4205 5.049680 CGTAGGGCGCAATCTGTATAAAATT 60.050 40.000 10.83 0.00 0.00 1.82
4132 4430 5.741011 TGGCGTAATCTTAATCTGGTTTCT 58.259 37.500 0.00 0.00 0.00 2.52
4508 4807 6.593770 TGAGAAAAGCGAAGAATATACAAGCA 59.406 34.615 0.00 0.00 0.00 3.91
4712 7877 8.042515 AGCCTTAAATTGTTGCATACATCATTT 58.957 29.630 12.26 12.26 36.44 2.32
4996 8167 2.014068 GCCAGATACCACAAGGACAGC 61.014 57.143 0.00 0.00 38.69 4.40
5117 8288 8.286191 AGGATTTTGATCTAAGATTGTTGGAC 57.714 34.615 0.00 0.00 0.00 4.02
5266 8437 2.106511 TCTACAGGAAGGCTTGCAGTTT 59.893 45.455 20.76 4.63 0.00 2.66
5304 8475 1.274703 TTTAGCTGAGGCCCTGGAGG 61.275 60.000 0.00 0.00 39.73 4.30
5324 8495 1.508088 CGTTTCATTGGAGCCAGCC 59.492 57.895 0.00 0.00 0.00 4.85
5344 8515 3.558505 CCACTTCAACAATTTCTGAGCG 58.441 45.455 0.00 0.00 0.00 5.03
5477 8649 3.243535 TGCACACCTCTAGATAGCATTCG 60.244 47.826 0.00 0.00 0.00 3.34
5615 8788 1.016627 GTGCATATTTGAGCCGAGCA 58.983 50.000 0.00 0.00 0.00 4.26
5632 8805 1.959985 AGCATCTGGACCTGATCTACG 59.040 52.381 10.75 2.09 0.00 3.51
5636 8809 3.367646 TCTGGACCTGATCTACGAGTT 57.632 47.619 0.00 0.00 0.00 3.01
5765 8946 2.552809 GGCATGGTTTCAGCCCAAATTT 60.553 45.455 0.00 0.00 42.58 1.82
5808 8989 5.724370 TGTAGGTACATCCATTTCAAGGAGA 59.276 40.000 0.00 0.00 38.83 3.71
5812 8993 7.872138 AGGTACATCCATTTCAAGGAGAATTA 58.128 34.615 0.00 0.00 38.83 1.40
5813 8994 8.506083 AGGTACATCCATTTCAAGGAGAATTAT 58.494 33.333 0.00 0.00 38.83 1.28
5985 9172 4.946772 TGACTCTGTCTATCTCCTGACTTG 59.053 45.833 0.00 0.00 34.57 3.16
5988 9175 3.698539 TCTGTCTATCTCCTGACTTGCTG 59.301 47.826 0.00 0.00 34.57 4.41
6034 9224 4.391830 GTCAATCTGAACCGTTCATTGCTA 59.608 41.667 14.29 0.73 39.30 3.49
6159 9350 6.763355 AGACAATTCATCTCTGTAGTTGTGT 58.237 36.000 0.00 0.00 0.00 3.72
6199 9438 5.367945 TCCTAATCCGCTAAATCCAAGTT 57.632 39.130 0.00 0.00 0.00 2.66
6203 9442 1.913419 TCCGCTAAATCCAAGTTCCCT 59.087 47.619 0.00 0.00 0.00 4.20
6229 9468 4.101448 GCGATCCTGGCACACCCT 62.101 66.667 0.00 0.00 33.59 4.34
6230 9469 2.731571 GCGATCCTGGCACACCCTA 61.732 63.158 0.00 0.00 33.59 3.53
6252 9491 0.039035 TACCCAAGCCGGAAAATGCT 59.961 50.000 5.05 0.00 40.17 3.79
6308 9547 1.750399 ATCTCAACGCATGGGCCAC 60.750 57.895 9.28 0.00 36.38 5.01
6364 9603 1.228063 CTGCAGCCCACACACTCTT 60.228 57.895 0.00 0.00 0.00 2.85
6416 9655 2.673258 TGGGAGTAGCCATTATCGTCA 58.327 47.619 0.00 0.00 38.95 4.35
6421 9660 4.202121 GGAGTAGCCATTATCGTCACTCAA 60.202 45.833 0.00 0.00 34.09 3.02
6456 9695 7.325821 CACTTCTTCATCTAGAGTCAATATCGC 59.674 40.741 0.00 0.00 0.00 4.58
6461 9700 2.885266 TCTAGAGTCAATATCGCCGCTT 59.115 45.455 0.00 0.00 0.00 4.68
6467 9706 1.300697 AATATCGCCGCTTCCGACC 60.301 57.895 0.00 0.00 37.56 4.79
6546 9790 2.286833 CCACAGTGTCTTACAAACCACG 59.713 50.000 0.00 0.00 33.14 4.94
6566 9810 2.412089 CGAGGAACTAAAGCGAAACTGG 59.588 50.000 0.00 0.00 41.55 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 4.489771 CACTCCCCACCGGCCATC 62.490 72.222 0.00 0.00 0.00 3.51
67 68 2.692273 AAAACTCACTCCCCACCGGC 62.692 60.000 0.00 0.00 0.00 6.13
68 69 0.889186 CAAAACTCACTCCCCACCGG 60.889 60.000 0.00 0.00 0.00 5.28
69 70 1.515521 GCAAAACTCACTCCCCACCG 61.516 60.000 0.00 0.00 0.00 4.94
70 71 1.179174 GGCAAAACTCACTCCCCACC 61.179 60.000 0.00 0.00 0.00 4.61
71 72 1.515521 CGGCAAAACTCACTCCCCAC 61.516 60.000 0.00 0.00 0.00 4.61
72 73 1.228124 CGGCAAAACTCACTCCCCA 60.228 57.895 0.00 0.00 0.00 4.96
73 74 0.322546 ATCGGCAAAACTCACTCCCC 60.323 55.000 0.00 0.00 0.00 4.81
74 75 2.396590 TATCGGCAAAACTCACTCCC 57.603 50.000 0.00 0.00 0.00 4.30
75 76 3.596214 TCTTATCGGCAAAACTCACTCC 58.404 45.455 0.00 0.00 0.00 3.85
76 77 3.619038 CCTCTTATCGGCAAAACTCACTC 59.381 47.826 0.00 0.00 0.00 3.51
77 78 3.600388 CCTCTTATCGGCAAAACTCACT 58.400 45.455 0.00 0.00 0.00 3.41
78 79 2.678336 CCCTCTTATCGGCAAAACTCAC 59.322 50.000 0.00 0.00 0.00 3.51
79 80 2.569853 TCCCTCTTATCGGCAAAACTCA 59.430 45.455 0.00 0.00 0.00 3.41
80 81 3.198872 CTCCCTCTTATCGGCAAAACTC 58.801 50.000 0.00 0.00 0.00 3.01
81 82 2.092914 CCTCCCTCTTATCGGCAAAACT 60.093 50.000 0.00 0.00 0.00 2.66
82 83 2.289565 CCTCCCTCTTATCGGCAAAAC 58.710 52.381 0.00 0.00 0.00 2.43
83 84 1.211949 CCCTCCCTCTTATCGGCAAAA 59.788 52.381 0.00 0.00 0.00 2.44
84 85 0.837272 CCCTCCCTCTTATCGGCAAA 59.163 55.000 0.00 0.00 0.00 3.68
85 86 1.054406 CCCCTCCCTCTTATCGGCAA 61.054 60.000 0.00 0.00 0.00 4.52
86 87 1.459539 CCCCTCCCTCTTATCGGCA 60.460 63.158 0.00 0.00 0.00 5.69
87 88 1.152312 TCCCCTCCCTCTTATCGGC 60.152 63.158 0.00 0.00 0.00 5.54
88 89 1.179814 CGTCCCCTCCCTCTTATCGG 61.180 65.000 0.00 0.00 0.00 4.18
89 90 0.178998 TCGTCCCCTCCCTCTTATCG 60.179 60.000 0.00 0.00 0.00 2.92
90 91 1.623163 CTCGTCCCCTCCCTCTTATC 58.377 60.000 0.00 0.00 0.00 1.75
91 92 0.188834 CCTCGTCCCCTCCCTCTTAT 59.811 60.000 0.00 0.00 0.00 1.73
92 93 1.219824 ACCTCGTCCCCTCCCTCTTA 61.220 60.000 0.00 0.00 0.00 2.10
93 94 2.364961 CCTCGTCCCCTCCCTCTT 59.635 66.667 0.00 0.00 0.00 2.85
94 95 2.947785 ACCTCGTCCCCTCCCTCT 60.948 66.667 0.00 0.00 0.00 3.69
95 96 2.760385 CACCTCGTCCCCTCCCTC 60.760 72.222 0.00 0.00 0.00 4.30
96 97 4.400251 CCACCTCGTCCCCTCCCT 62.400 72.222 0.00 0.00 0.00 4.20
97 98 4.716977 ACCACCTCGTCCCCTCCC 62.717 72.222 0.00 0.00 0.00 4.30
98 99 3.391382 CACCACCTCGTCCCCTCC 61.391 72.222 0.00 0.00 0.00 4.30
99 100 3.391382 CCACCACCTCGTCCCCTC 61.391 72.222 0.00 0.00 0.00 4.30
103 104 4.016706 CACCCCACCACCTCGTCC 62.017 72.222 0.00 0.00 0.00 4.79
104 105 4.016706 CCACCCCACCACCTCGTC 62.017 72.222 0.00 0.00 0.00 4.20
122 123 2.996734 ATGCAAAAGCCCACCCGG 60.997 61.111 0.00 0.00 0.00 5.73
123 124 2.262292 CATGCAAAAGCCCACCCG 59.738 61.111 0.00 0.00 0.00 5.28
124 125 2.046988 GCATGCAAAAGCCCACCC 60.047 61.111 14.21 0.00 0.00 4.61
125 126 2.432972 CGCATGCAAAAGCCCACC 60.433 61.111 19.57 0.00 0.00 4.61
126 127 2.229690 ATCCGCATGCAAAAGCCCAC 62.230 55.000 19.57 0.00 0.00 4.61
127 128 1.543065 AATCCGCATGCAAAAGCCCA 61.543 50.000 19.57 0.00 0.00 5.36
128 129 1.085501 CAATCCGCATGCAAAAGCCC 61.086 55.000 19.57 0.00 0.00 5.19
129 130 0.108709 TCAATCCGCATGCAAAAGCC 60.109 50.000 19.57 0.00 0.00 4.35
130 131 1.657094 CTTCAATCCGCATGCAAAAGC 59.343 47.619 19.57 0.00 0.00 3.51
131 132 2.950433 ACTTCAATCCGCATGCAAAAG 58.050 42.857 19.57 12.64 0.00 2.27
132 133 3.383620 AACTTCAATCCGCATGCAAAA 57.616 38.095 19.57 1.91 0.00 2.44
133 134 3.005684 AGAAACTTCAATCCGCATGCAAA 59.994 39.130 19.57 4.81 0.00 3.68
134 135 2.557924 AGAAACTTCAATCCGCATGCAA 59.442 40.909 19.57 5.23 0.00 4.08
135 136 2.161855 AGAAACTTCAATCCGCATGCA 58.838 42.857 19.57 0.00 0.00 3.96
136 137 2.478539 GGAGAAACTTCAATCCGCATGC 60.479 50.000 7.91 7.91 0.00 4.06
137 138 3.411415 GGAGAAACTTCAATCCGCATG 57.589 47.619 0.00 0.00 0.00 4.06
142 143 4.381411 CCTATCCGGAGAAACTTCAATCC 58.619 47.826 11.34 0.00 33.16 3.01
143 144 4.101119 TCCCTATCCGGAGAAACTTCAATC 59.899 45.833 11.34 0.00 33.16 2.67
144 145 4.037927 TCCCTATCCGGAGAAACTTCAAT 58.962 43.478 11.34 0.00 33.16 2.57
145 146 3.446968 TCCCTATCCGGAGAAACTTCAA 58.553 45.455 11.34 0.00 33.16 2.69
146 147 3.110293 TCCCTATCCGGAGAAACTTCA 57.890 47.619 11.34 0.00 33.16 3.02
147 148 4.691326 ATTCCCTATCCGGAGAAACTTC 57.309 45.455 11.34 0.00 32.13 3.01
148 149 5.193679 CAAATTCCCTATCCGGAGAAACTT 58.806 41.667 11.34 3.49 32.13 2.66
149 150 4.781934 CAAATTCCCTATCCGGAGAAACT 58.218 43.478 11.34 0.00 32.13 2.66
150 151 3.315470 GCAAATTCCCTATCCGGAGAAAC 59.685 47.826 11.34 0.00 32.13 2.78
151 152 3.053991 TGCAAATTCCCTATCCGGAGAAA 60.054 43.478 11.34 0.00 32.13 2.52
152 153 2.507886 TGCAAATTCCCTATCCGGAGAA 59.492 45.455 11.34 8.43 32.13 2.87
153 154 2.123589 TGCAAATTCCCTATCCGGAGA 58.876 47.619 11.34 3.76 32.13 3.71
154 155 2.638480 TGCAAATTCCCTATCCGGAG 57.362 50.000 11.34 0.00 32.13 4.63
155 156 4.927267 ATATGCAAATTCCCTATCCGGA 57.073 40.909 6.61 6.61 33.16 5.14
156 157 4.380867 GCAATATGCAAATTCCCTATCCGG 60.381 45.833 0.00 0.00 44.26 5.14
157 158 4.737054 GCAATATGCAAATTCCCTATCCG 58.263 43.478 0.00 0.00 44.26 4.18
171 172 5.694006 CGGGCTCTATATAGAAGCAATATGC 59.306 44.000 23.71 16.58 45.46 3.14
172 173 7.043961 TCGGGCTCTATATAGAAGCAATATG 57.956 40.000 23.71 10.12 32.09 1.78
173 174 7.256119 CCATCGGGCTCTATATAGAAGCAATAT 60.256 40.741 23.71 15.35 32.09 1.28
174 175 6.040955 CCATCGGGCTCTATATAGAAGCAATA 59.959 42.308 23.71 14.35 32.09 1.90
175 176 5.163364 CCATCGGGCTCTATATAGAAGCAAT 60.163 44.000 23.71 15.78 32.09 3.56
176 177 4.160439 CCATCGGGCTCTATATAGAAGCAA 59.840 45.833 23.71 14.79 32.09 3.91
177 178 3.701542 CCATCGGGCTCTATATAGAAGCA 59.298 47.826 23.71 12.20 32.09 3.91
178 179 3.702045 ACCATCGGGCTCTATATAGAAGC 59.298 47.826 13.41 16.42 37.90 3.86
179 180 6.377429 TGTTACCATCGGGCTCTATATAGAAG 59.623 42.308 13.41 8.82 37.90 2.85
180 181 6.250711 TGTTACCATCGGGCTCTATATAGAA 58.749 40.000 13.41 0.00 37.90 2.10
181 182 5.823312 TGTTACCATCGGGCTCTATATAGA 58.177 41.667 11.94 11.94 37.90 1.98
182 183 5.886474 TCTGTTACCATCGGGCTCTATATAG 59.114 44.000 3.10 3.10 37.90 1.31
183 184 5.823312 TCTGTTACCATCGGGCTCTATATA 58.177 41.667 0.00 0.00 37.90 0.86
184 185 4.673968 TCTGTTACCATCGGGCTCTATAT 58.326 43.478 0.00 0.00 37.90 0.86
185 186 4.108501 TCTGTTACCATCGGGCTCTATA 57.891 45.455 0.00 0.00 37.90 1.31
186 187 2.958818 TCTGTTACCATCGGGCTCTAT 58.041 47.619 0.00 0.00 37.90 1.98
187 188 2.447408 TCTGTTACCATCGGGCTCTA 57.553 50.000 0.00 0.00 37.90 2.43
188 189 1.568504 TTCTGTTACCATCGGGCTCT 58.431 50.000 0.00 0.00 37.90 4.09
189 190 2.622064 ATTCTGTTACCATCGGGCTC 57.378 50.000 0.00 0.00 37.90 4.70
190 191 4.706842 ATTATTCTGTTACCATCGGGCT 57.293 40.909 0.00 0.00 37.90 5.19
191 192 6.879458 AGAATATTATTCTGTTACCATCGGGC 59.121 38.462 16.38 0.00 37.90 6.13
192 193 8.256611 CAGAATATTATTCTGTTACCATCGGG 57.743 38.462 27.48 7.55 40.63 5.14
217 218 5.068329 ACCCGGCTATTCTGTTACTAGTAAC 59.932 44.000 30.62 30.62 44.16 2.50
218 219 5.068198 CACCCGGCTATTCTGTTACTAGTAA 59.932 44.000 11.38 11.38 0.00 2.24
219 220 4.581824 CACCCGGCTATTCTGTTACTAGTA 59.418 45.833 0.00 0.00 0.00 1.82
220 221 3.383825 CACCCGGCTATTCTGTTACTAGT 59.616 47.826 0.00 0.00 0.00 2.57
221 222 3.383825 ACACCCGGCTATTCTGTTACTAG 59.616 47.826 0.00 0.00 0.00 2.57
222 223 3.368248 ACACCCGGCTATTCTGTTACTA 58.632 45.455 0.00 0.00 0.00 1.82
223 224 2.185387 ACACCCGGCTATTCTGTTACT 58.815 47.619 0.00 0.00 0.00 2.24
224 225 2.676342 CAACACCCGGCTATTCTGTTAC 59.324 50.000 0.00 0.00 0.00 2.50
225 226 2.937873 GCAACACCCGGCTATTCTGTTA 60.938 50.000 0.00 0.00 0.00 2.41
226 227 1.821216 CAACACCCGGCTATTCTGTT 58.179 50.000 0.00 0.00 0.00 3.16
227 228 0.676782 GCAACACCCGGCTATTCTGT 60.677 55.000 0.00 0.00 0.00 3.41
228 229 1.376609 GGCAACACCCGGCTATTCTG 61.377 60.000 0.00 0.00 0.00 3.02
229 230 1.077716 GGCAACACCCGGCTATTCT 60.078 57.895 0.00 0.00 0.00 2.40
230 231 1.376609 CTGGCAACACCCGGCTATTC 61.377 60.000 0.00 0.00 46.17 1.75
231 232 1.378514 CTGGCAACACCCGGCTATT 60.379 57.895 0.00 0.00 46.17 1.73
232 233 2.272146 CTGGCAACACCCGGCTAT 59.728 61.111 0.00 0.00 46.17 2.97
233 234 2.925706 TCTGGCAACACCCGGCTA 60.926 61.111 0.00 0.00 46.17 3.93
234 235 4.643387 GTCTGGCAACACCCGGCT 62.643 66.667 0.00 0.00 46.17 5.52
235 236 4.947147 TGTCTGGCAACACCCGGC 62.947 66.667 0.00 0.00 46.17 6.13
236 237 1.388065 TTTTGTCTGGCAACACCCGG 61.388 55.000 0.00 0.00 46.17 5.73
237 238 0.248866 GTTTTGTCTGGCAACACCCG 60.249 55.000 0.00 0.00 46.17 5.28
238 239 0.104120 GGTTTTGTCTGGCAACACCC 59.896 55.000 17.36 3.89 46.80 4.61
239 240 3.659850 GGTTTTGTCTGGCAACACC 57.340 52.632 13.87 13.87 46.64 4.16
240 241 0.454196 ACGGTTTTGTCTGGCAACAC 59.546 50.000 2.79 2.79 46.17 3.32
242 243 1.265905 CCTACGGTTTTGTCTGGCAAC 59.734 52.381 0.00 0.00 36.72 4.17
243 244 1.600023 CCTACGGTTTTGTCTGGCAA 58.400 50.000 0.00 0.00 34.87 4.52
244 245 0.250553 CCCTACGGTTTTGTCTGGCA 60.251 55.000 0.00 0.00 0.00 4.92
245 246 0.250597 ACCCTACGGTTTTGTCTGGC 60.251 55.000 0.00 0.00 40.58 4.85
257 258 2.433664 GCCGTCACCAACCCTACG 60.434 66.667 0.00 0.00 35.20 3.51
258 259 2.433664 CGCCGTCACCAACCCTAC 60.434 66.667 0.00 0.00 0.00 3.18
259 260 3.697747 CCGCCGTCACCAACCCTA 61.698 66.667 0.00 0.00 0.00 3.53
272 273 3.718210 CTTCTACCAGTCCGCCGCC 62.718 68.421 0.00 0.00 0.00 6.13
273 274 2.202756 CTTCTACCAGTCCGCCGC 60.203 66.667 0.00 0.00 0.00 6.53
274 275 0.736325 CAACTTCTACCAGTCCGCCG 60.736 60.000 0.00 0.00 0.00 6.46
275 276 0.391263 CCAACTTCTACCAGTCCGCC 60.391 60.000 0.00 0.00 0.00 6.13
276 277 0.391263 CCCAACTTCTACCAGTCCGC 60.391 60.000 0.00 0.00 0.00 5.54
277 278 0.391263 GCCCAACTTCTACCAGTCCG 60.391 60.000 0.00 0.00 0.00 4.79
278 279 0.984995 AGCCCAACTTCTACCAGTCC 59.015 55.000 0.00 0.00 0.00 3.85
279 280 3.597255 GTTAGCCCAACTTCTACCAGTC 58.403 50.000 0.00 0.00 34.06 3.51
280 281 2.028385 CGTTAGCCCAACTTCTACCAGT 60.028 50.000 0.00 0.00 34.77 4.00
281 282 2.618053 CGTTAGCCCAACTTCTACCAG 58.382 52.381 0.00 0.00 34.77 4.00
282 283 1.338389 GCGTTAGCCCAACTTCTACCA 60.338 52.381 0.00 0.00 37.42 3.25
283 284 1.338389 TGCGTTAGCCCAACTTCTACC 60.338 52.381 0.00 0.00 44.33 3.18
284 285 2.088950 TGCGTTAGCCCAACTTCTAC 57.911 50.000 0.00 0.00 44.33 2.59
285 286 2.614481 CCTTGCGTTAGCCCAACTTCTA 60.614 50.000 0.00 0.00 44.33 2.10
286 287 1.523758 CTTGCGTTAGCCCAACTTCT 58.476 50.000 0.00 0.00 44.33 2.85
287 288 0.521735 CCTTGCGTTAGCCCAACTTC 59.478 55.000 0.00 0.00 44.33 3.01
288 289 0.179001 ACCTTGCGTTAGCCCAACTT 60.179 50.000 0.00 0.00 44.33 2.66
289 290 0.179001 AACCTTGCGTTAGCCCAACT 60.179 50.000 0.00 0.00 44.33 3.16
290 291 0.671796 AAACCTTGCGTTAGCCCAAC 59.328 50.000 0.00 0.00 44.33 3.77
291 292 0.671251 CAAACCTTGCGTTAGCCCAA 59.329 50.000 0.00 0.00 44.33 4.12
292 293 1.175983 CCAAACCTTGCGTTAGCCCA 61.176 55.000 0.00 0.00 44.33 5.36
293 294 0.891904 TCCAAACCTTGCGTTAGCCC 60.892 55.000 0.00 0.00 44.33 5.19
294 295 0.240145 GTCCAAACCTTGCGTTAGCC 59.760 55.000 0.00 0.00 44.33 3.93
295 296 0.110373 CGTCCAAACCTTGCGTTAGC 60.110 55.000 0.00 0.00 45.41 3.09
296 297 0.515564 CCGTCCAAACCTTGCGTTAG 59.484 55.000 0.00 0.00 33.05 2.34
297 298 0.885596 CCCGTCCAAACCTTGCGTTA 60.886 55.000 0.00 0.00 33.05 3.18
298 299 2.190841 CCCGTCCAAACCTTGCGTT 61.191 57.895 0.00 0.00 35.70 4.84
299 300 2.593436 CCCGTCCAAACCTTGCGT 60.593 61.111 0.00 0.00 0.00 5.24
300 301 1.448922 TTTCCCGTCCAAACCTTGCG 61.449 55.000 0.00 0.00 0.00 4.85
301 302 0.313987 CTTTCCCGTCCAAACCTTGC 59.686 55.000 0.00 0.00 0.00 4.01
302 303 0.958822 CCTTTCCCGTCCAAACCTTG 59.041 55.000 0.00 0.00 0.00 3.61
303 304 0.554305 ACCTTTCCCGTCCAAACCTT 59.446 50.000 0.00 0.00 0.00 3.50
304 305 1.437397 TACCTTTCCCGTCCAAACCT 58.563 50.000 0.00 0.00 0.00 3.50
305 306 2.026542 AGATACCTTTCCCGTCCAAACC 60.027 50.000 0.00 0.00 0.00 3.27
306 307 3.345508 AGATACCTTTCCCGTCCAAAC 57.654 47.619 0.00 0.00 0.00 2.93
307 308 4.533311 ACTAAGATACCTTTCCCGTCCAAA 59.467 41.667 0.00 0.00 33.94 3.28
308 309 4.098894 ACTAAGATACCTTTCCCGTCCAA 58.901 43.478 0.00 0.00 33.94 3.53
309 310 3.716431 ACTAAGATACCTTTCCCGTCCA 58.284 45.455 0.00 0.00 33.94 4.02
310 311 4.439968 CAACTAAGATACCTTTCCCGTCC 58.560 47.826 0.00 0.00 33.94 4.79
311 312 3.869832 GCAACTAAGATACCTTTCCCGTC 59.130 47.826 0.00 0.00 33.94 4.79
312 313 3.677976 CGCAACTAAGATACCTTTCCCGT 60.678 47.826 0.00 0.00 33.94 5.28
313 314 2.864343 CGCAACTAAGATACCTTTCCCG 59.136 50.000 0.00 0.00 33.94 5.14
314 315 3.869832 GACGCAACTAAGATACCTTTCCC 59.130 47.826 0.00 0.00 33.94 3.97
315 316 3.869832 GGACGCAACTAAGATACCTTTCC 59.130 47.826 0.00 0.00 33.94 3.13
316 317 3.869832 GGGACGCAACTAAGATACCTTTC 59.130 47.826 0.00 0.00 33.94 2.62
317 318 3.370209 GGGGACGCAACTAAGATACCTTT 60.370 47.826 0.00 0.00 33.94 3.11
318 319 2.169978 GGGGACGCAACTAAGATACCTT 59.830 50.000 0.00 0.00 36.43 3.50
319 320 1.761198 GGGGACGCAACTAAGATACCT 59.239 52.381 0.00 0.00 0.00 3.08
320 321 1.761198 AGGGGACGCAACTAAGATACC 59.239 52.381 0.00 0.00 0.00 2.73
321 322 3.538634 AAGGGGACGCAACTAAGATAC 57.461 47.619 0.00 0.00 0.00 2.24
322 323 4.563140 AAAAGGGGACGCAACTAAGATA 57.437 40.909 0.00 0.00 0.00 1.98
323 324 3.434940 AAAAGGGGACGCAACTAAGAT 57.565 42.857 0.00 0.00 0.00 2.40
324 325 2.943036 AAAAGGGGACGCAACTAAGA 57.057 45.000 0.00 0.00 0.00 2.10
347 348 6.631016 ACAAGTGAAAGAGAAAAAGGGAAAC 58.369 36.000 0.00 0.00 0.00 2.78
351 352 7.276438 CAGAAAACAAGTGAAAGAGAAAAAGGG 59.724 37.037 0.00 0.00 0.00 3.95
353 354 7.543520 AGCAGAAAACAAGTGAAAGAGAAAAAG 59.456 33.333 0.00 0.00 0.00 2.27
370 371 8.755941 GGAAAGATCAAAACTAAAGCAGAAAAC 58.244 33.333 0.00 0.00 0.00 2.43
595 608 9.831737 AGAATGTTGAACGATTTTAAGAAGATG 57.168 29.630 0.00 0.00 0.00 2.90
609 622 8.218441 TCTCGTGTATTAAAAGAATGTTGAACG 58.782 33.333 0.00 0.00 0.00 3.95
642 655 6.567769 TTTCAAAAGATTTGACGCACTTTC 57.432 33.333 5.09 0.00 32.52 2.62
643 656 6.959671 TTTTCAAAAGATTTGACGCACTTT 57.040 29.167 5.09 0.00 34.67 2.66
644 657 7.401080 CAATTTTCAAAAGATTTGACGCACTT 58.599 30.769 5.09 0.00 0.00 3.16
646 659 5.616785 GCAATTTTCAAAAGATTTGACGCAC 59.383 36.000 5.09 0.00 0.00 5.34
647 660 5.292834 TGCAATTTTCAAAAGATTTGACGCA 59.707 32.000 5.09 6.89 0.00 5.24
648 661 5.736338 TGCAATTTTCAAAAGATTTGACGC 58.264 33.333 5.09 4.83 0.00 5.19
649 662 8.486383 TGTATGCAATTTTCAAAAGATTTGACG 58.514 29.630 5.09 0.00 0.00 4.35
688 702 6.385843 TGTGCTTTAAACGATGTTTGCATAT 58.614 32.000 5.24 0.00 35.07 1.78
925 942 5.989551 ATTTCACATTGGTCTTTTGTTGC 57.010 34.783 0.00 0.00 0.00 4.17
927 944 6.538381 GGTCAATTTCACATTGGTCTTTTGTT 59.462 34.615 0.00 0.00 0.00 2.83
962 979 1.567208 TTCCCTGCTTAATGGGCCGA 61.567 55.000 0.00 0.00 43.04 5.54
978 995 2.592861 CTGGGGCGCTGCTATTCC 60.593 66.667 7.64 0.00 0.00 3.01
1027 1044 4.016706 GTGGAGGTGGTCGTGGGG 62.017 72.222 0.00 0.00 0.00 4.96
1028 1045 4.373116 CGTGGAGGTGGTCGTGGG 62.373 72.222 0.00 0.00 0.00 4.61
1029 1046 4.373116 CCGTGGAGGTGGTCGTGG 62.373 72.222 0.00 0.00 34.51 4.94
1081 1107 1.294780 CTGGAGAGTGGTGTCAGGC 59.705 63.158 0.00 0.00 0.00 4.85
1083 1109 3.902515 CACTGGAGAGTGGTGTCAG 57.097 57.895 0.00 0.00 45.26 3.51
1121 1149 2.047179 GGTGAGGCCGGAGAACAC 60.047 66.667 5.05 9.29 0.00 3.32
1164 1193 4.593864 GTCTGCTCGGATCGGGGC 62.594 72.222 17.74 17.74 0.00 5.80
1256 1285 2.224159 TTCCTCCTGGTGACCTGCC 61.224 63.158 2.11 0.00 34.23 4.85
1296 1325 3.573772 CTTCACGTGAGCCGCCAGA 62.574 63.158 19.11 0.00 41.42 3.86
1521 1550 0.750249 TGCGGAGGAATATGAGCGAA 59.250 50.000 0.00 0.00 0.00 4.70
1549 1605 2.095263 CCGCAAATCCTACTTGTTGGTG 60.095 50.000 1.62 0.00 0.00 4.17
1550 1606 2.159382 CCGCAAATCCTACTTGTTGGT 58.841 47.619 1.62 0.00 0.00 3.67
1551 1607 1.135402 GCCGCAAATCCTACTTGTTGG 60.135 52.381 0.00 0.00 0.00 3.77
1552 1608 1.465689 CGCCGCAAATCCTACTTGTTG 60.466 52.381 0.00 0.00 0.00 3.33
1553 1609 0.802494 CGCCGCAAATCCTACTTGTT 59.198 50.000 0.00 0.00 0.00 2.83
1554 1610 0.321298 ACGCCGCAAATCCTACTTGT 60.321 50.000 0.00 0.00 0.00 3.16
1555 1611 0.096976 CACGCCGCAAATCCTACTTG 59.903 55.000 0.00 0.00 0.00 3.16
1556 1612 1.024579 CCACGCCGCAAATCCTACTT 61.025 55.000 0.00 0.00 0.00 2.24
1557 1613 1.449601 CCACGCCGCAAATCCTACT 60.450 57.895 0.00 0.00 0.00 2.57
1558 1614 1.743995 ACCACGCCGCAAATCCTAC 60.744 57.895 0.00 0.00 0.00 3.18
1559 1615 1.743623 CACCACGCCGCAAATCCTA 60.744 57.895 0.00 0.00 0.00 2.94
1560 1616 3.055719 CACCACGCCGCAAATCCT 61.056 61.111 0.00 0.00 0.00 3.24
1561 1617 4.776647 GCACCACGCCGCAAATCC 62.777 66.667 0.00 0.00 32.94 3.01
1562 1618 2.747507 AAAGCACCACGCCGCAAATC 62.748 55.000 0.00 0.00 44.04 2.17
1563 1619 2.855514 AAAGCACCACGCCGCAAAT 61.856 52.632 0.00 0.00 44.04 2.32
1564 1620 3.522731 AAAGCACCACGCCGCAAA 61.523 55.556 0.00 0.00 44.04 3.68
1565 1621 4.263209 CAAAGCACCACGCCGCAA 62.263 61.111 0.00 0.00 44.04 4.85
1567 1623 4.683334 GACAAAGCACCACGCCGC 62.683 66.667 0.00 0.00 44.04 6.53
1568 1624 2.329678 TTTGACAAAGCACCACGCCG 62.330 55.000 0.00 0.00 44.04 6.46
1569 1625 0.869880 GTTTGACAAAGCACCACGCC 60.870 55.000 0.00 0.00 44.04 5.68
1570 1626 0.179150 TGTTTGACAAAGCACCACGC 60.179 50.000 0.00 0.00 42.91 5.34
1571 1627 2.033299 AGATGTTTGACAAAGCACCACG 59.967 45.455 0.00 0.00 28.47 4.94
1572 1628 3.715628 AGATGTTTGACAAAGCACCAC 57.284 42.857 0.00 0.00 28.47 4.16
1573 1629 3.446873 ACAAGATGTTTGACAAAGCACCA 59.553 39.130 0.00 0.00 28.47 4.17
1574 1630 3.798337 CACAAGATGTTTGACAAAGCACC 59.202 43.478 0.00 0.00 28.47 5.01
1575 1631 3.243643 GCACAAGATGTTTGACAAAGCAC 59.756 43.478 0.00 0.00 28.47 4.40
1576 1632 3.446799 GCACAAGATGTTTGACAAAGCA 58.553 40.909 0.00 3.52 0.00 3.91
1577 1633 2.468777 CGCACAAGATGTTTGACAAAGC 59.531 45.455 0.00 0.00 0.00 3.51
1578 1634 3.044986 CCGCACAAGATGTTTGACAAAG 58.955 45.455 0.00 0.00 0.00 2.77
1579 1635 2.685388 TCCGCACAAGATGTTTGACAAA 59.315 40.909 0.00 0.00 0.00 2.83
1580 1636 2.032799 GTCCGCACAAGATGTTTGACAA 59.967 45.455 0.00 0.00 0.00 3.18
1606 1662 5.738118 AGCTACACTATCTTACGACTGAC 57.262 43.478 0.00 0.00 0.00 3.51
1655 1714 1.714794 ACGAGCACACAAGACATAGC 58.285 50.000 0.00 0.00 0.00 2.97
1673 1732 3.042887 GTGTTCAACGAAATGCCTCAAC 58.957 45.455 0.00 0.00 0.00 3.18
1674 1733 2.034053 GGTGTTCAACGAAATGCCTCAA 59.966 45.455 0.00 0.00 0.00 3.02
1726 1785 5.005740 CCATCTTGACATTTCCTCAGAACA 58.994 41.667 0.00 0.00 0.00 3.18
1730 1789 4.226427 TCCCATCTTGACATTTCCTCAG 57.774 45.455 0.00 0.00 0.00 3.35
1733 1792 4.386088 CCTGATCCCATCTTGACATTTCCT 60.386 45.833 0.00 0.00 0.00 3.36
1741 1800 2.278245 ACCAACCTGATCCCATCTTGA 58.722 47.619 0.00 0.00 0.00 3.02
1782 1841 4.672413 GCGTATTTGCTAAACATGATCAGC 59.328 41.667 0.00 4.96 34.56 4.26
1786 1845 4.640201 ACCAGCGTATTTGCTAAACATGAT 59.360 37.500 0.00 0.00 45.23 2.45
1788 1847 4.355543 ACCAGCGTATTTGCTAAACATG 57.644 40.909 0.00 0.00 45.23 3.21
1804 1863 2.407428 GCCGCCCTTTCTTACCAGC 61.407 63.158 0.00 0.00 0.00 4.85
1805 1864 1.002624 TGCCGCCCTTTCTTACCAG 60.003 57.895 0.00 0.00 0.00 4.00
1806 1865 1.302993 GTGCCGCCCTTTCTTACCA 60.303 57.895 0.00 0.00 0.00 3.25
1810 1903 2.564721 GCTTGTGCCGCCCTTTCTT 61.565 57.895 0.00 0.00 0.00 2.52
1827 1920 2.268076 AAACCCATCAGCACGGTGC 61.268 57.895 25.00 25.00 45.46 5.01
1831 1926 0.518636 CACTCAAACCCATCAGCACG 59.481 55.000 0.00 0.00 0.00 5.34
1843 1938 1.658994 GAACCACCGACACACTCAAA 58.341 50.000 0.00 0.00 0.00 2.69
1897 1993 2.100631 CGGCATCCTCCGTGTGAAC 61.101 63.158 0.00 0.00 44.18 3.18
1898 1994 2.264480 CGGCATCCTCCGTGTGAA 59.736 61.111 0.00 0.00 44.18 3.18
1979 2076 1.798234 GCCAGTCATGTTGCAGCACA 61.798 55.000 5.00 0.00 0.00 4.57
1981 2078 2.270257 GGCCAGTCATGTTGCAGCA 61.270 57.895 5.46 5.46 0.00 4.41
1985 2082 2.048603 GGGAGGCCAGTCATGTTGC 61.049 63.158 5.01 0.00 0.00 4.17
2005 2102 0.963962 TCCACCTTAGACCGTCACAC 59.036 55.000 0.40 0.00 0.00 3.82
2008 2105 2.901192 TGAATTCCACCTTAGACCGTCA 59.099 45.455 2.27 0.00 0.00 4.35
2009 2106 3.604875 TGAATTCCACCTTAGACCGTC 57.395 47.619 2.27 0.00 0.00 4.79
2010 2107 3.118371 GGATGAATTCCACCTTAGACCGT 60.118 47.826 2.27 0.00 44.74 4.83
2011 2108 3.467803 GGATGAATTCCACCTTAGACCG 58.532 50.000 2.27 0.00 44.74 4.79
2050 2153 1.153208 CTCCATGGCAGTCCTGAGC 60.153 63.158 6.96 0.00 0.00 4.26
2053 2156 0.617413 AGAACTCCATGGCAGTCCTG 59.383 55.000 6.96 0.00 0.00 3.86
2054 2157 2.237392 GTTAGAACTCCATGGCAGTCCT 59.763 50.000 6.96 7.56 0.00 3.85
2077 2180 3.460857 AGATCTTTCCATAGTCACGCC 57.539 47.619 0.00 0.00 0.00 5.68
2079 2182 7.597386 TCATGATAGATCTTTCCATAGTCACG 58.403 38.462 0.00 0.00 0.00 4.35
2124 2227 3.562176 GGGTTTCATCCCAGACATGAAGT 60.562 47.826 0.00 0.00 46.30 3.01
2139 2242 0.555769 AGGCCAGAACAAGGGTTTCA 59.444 50.000 5.01 0.00 37.36 2.69
2140 2243 1.704641 AAGGCCAGAACAAGGGTTTC 58.295 50.000 5.01 0.00 37.36 2.78
2141 2244 2.174685 AAAGGCCAGAACAAGGGTTT 57.825 45.000 5.01 0.00 37.36 3.27
2142 2245 3.542969 ATAAAGGCCAGAACAAGGGTT 57.457 42.857 5.01 0.00 40.76 4.11
2143 2246 3.542969 AATAAAGGCCAGAACAAGGGT 57.457 42.857 5.01 0.00 0.00 4.34
2144 2247 6.154363 TCAATAAATAAAGGCCAGAACAAGGG 59.846 38.462 5.01 0.00 0.00 3.95
2155 2258 7.726216 ACTAAGCCCAATCAATAAATAAAGGC 58.274 34.615 0.00 0.00 38.16 4.35
2190 2293 4.584394 CTTGAACAAGGTAACGACACAAC 58.416 43.478 6.66 0.00 46.39 3.32
2209 2312 1.069022 CGGCAATGAGACAACACCTTG 60.069 52.381 0.00 0.00 0.00 3.61
2223 2326 0.035152 TGAAGACCAGCATCGGCAAT 60.035 50.000 0.00 0.00 44.61 3.56
2256 2359 5.716703 AGGAAAAGTATTTGATCCAGGTTGG 59.283 40.000 6.03 0.00 39.02 3.77
2294 2397 2.560861 CCATTGTTGGCACGTCCG 59.439 61.111 0.00 0.00 35.85 4.79
2316 2419 4.006989 CGTCAAGAATGGATAAACACCCA 58.993 43.478 0.00 0.00 0.00 4.51
2506 2609 1.770061 ACAGGGTGTTAAAACCTCCGA 59.230 47.619 14.65 0.00 40.35 4.55
2954 3245 3.058016 GCACAGAAACAGAGCAAGCATAA 60.058 43.478 0.00 0.00 0.00 1.90
3254 3545 3.117738 AGGATTCTTGCACCCTTGATAGG 60.118 47.826 0.00 0.00 41.60 2.57
3374 3665 4.380867 CCTTTACGCCAATGCTGAATTCTT 60.381 41.667 7.05 0.00 34.43 2.52
3485 3778 5.657302 ACGGTAAGACTTCATGTTAGGAGAT 59.343 40.000 0.00 0.00 0.00 2.75
3536 3829 5.716228 TGATTCACTGCCCATGATTAGTTTT 59.284 36.000 0.00 0.00 0.00 2.43
3659 3952 9.460019 AAGAAAATGACAAAAAGAATTTGGGAA 57.540 25.926 5.96 0.00 39.02 3.97
3709 4002 5.652891 AGGAGTCTAATAGTGTCACATTCGT 59.347 40.000 5.62 0.00 0.00 3.85
3812 4109 7.284261 TCCACATTTGTCAGTTCTTTATCACAA 59.716 33.333 0.00 0.00 0.00 3.33
3908 4205 9.022884 TCAACATCATCAATGATTTGGAGTTAA 57.977 29.630 17.78 2.31 44.70 2.01
4727 7892 3.253230 GGGAGTTCAATTCAAAATGCCG 58.747 45.455 0.00 0.00 0.00 5.69
5117 8288 5.752892 ATATCAAAGCTGAGCATGTCTTG 57.247 39.130 7.39 2.24 34.23 3.02
5266 8437 4.608170 AAATCTGAATCCCAAAGCCCTA 57.392 40.909 0.00 0.00 0.00 3.53
5304 8475 1.508088 CTGGCTCCAATGAAACGCC 59.492 57.895 0.00 0.00 41.06 5.68
5308 8479 0.112995 AGTGGCTGGCTCCAATGAAA 59.887 50.000 2.00 0.00 37.96 2.69
5324 8495 3.970610 CACGCTCAGAAATTGTTGAAGTG 59.029 43.478 10.47 10.47 0.00 3.16
5344 8515 5.317808 TCCAGTATATCTCAGAGCTACCAC 58.682 45.833 0.00 0.00 0.00 4.16
5477 8649 5.880054 TCTTGATTTTACTTGCCTGCTAC 57.120 39.130 0.00 0.00 0.00 3.58
5615 8788 3.586470 ACTCGTAGATCAGGTCCAGAT 57.414 47.619 0.00 0.00 33.89 2.90
5632 8805 4.949856 TGAAATCCCAGGAAATGCTAACTC 59.050 41.667 0.00 0.00 0.00 3.01
5636 8809 4.591321 ACTGAAATCCCAGGAAATGCTA 57.409 40.909 0.00 0.00 38.44 3.49
5765 8946 1.548269 CAATTTCAAGGCCCGGCTAAA 59.452 47.619 9.86 5.88 0.00 1.85
5894 9078 9.982651 TGTCTTTCCATTGTACTAGCTATTATC 57.017 33.333 0.00 0.00 0.00 1.75
5967 9154 3.737663 GCAGCAAGTCAGGAGATAGACAG 60.738 52.174 0.00 0.00 37.23 3.51
6061 9251 6.433093 TGTTATTAAGGCAGAAGAAAGGGAAC 59.567 38.462 0.00 0.00 0.00 3.62
6066 9256 7.976175 GGGAATTGTTATTAAGGCAGAAGAAAG 59.024 37.037 0.00 0.00 0.00 2.62
6144 9335 6.605471 TGAATACCACACAACTACAGAGAT 57.395 37.500 0.00 0.00 0.00 2.75
6159 9350 3.445008 AGGAAGTGAGAGCTGAATACCA 58.555 45.455 0.00 0.00 0.00 3.25
6199 9438 4.804420 ATCGCTGGGCAGGAGGGA 62.804 66.667 0.00 0.00 36.88 4.20
6203 9442 3.473647 CAGGATCGCTGGGCAGGA 61.474 66.667 3.90 0.00 0.00 3.86
6223 9462 0.916809 GGCTTGGGTATGTAGGGTGT 59.083 55.000 0.00 0.00 0.00 4.16
6229 9468 3.283751 CATTTTCCGGCTTGGGTATGTA 58.716 45.455 0.00 0.00 38.76 2.29
6230 9469 2.099405 CATTTTCCGGCTTGGGTATGT 58.901 47.619 0.00 0.00 38.76 2.29
6277 9516 3.642705 CGTTGAGATGATCGCTATGGAA 58.357 45.455 0.00 0.00 0.00 3.53
6364 9603 1.602323 CCTAAGCACAACGGCCCAA 60.602 57.895 0.00 0.00 0.00 4.12
6416 9655 4.649674 TGAAGAAGTGTACTGGACTTGAGT 59.350 41.667 2.06 0.00 33.71 3.41
6421 9660 6.486056 TCTAGATGAAGAAGTGTACTGGACT 58.514 40.000 0.00 0.00 0.00 3.85
6483 9727 2.774809 AGAGGGGGCTCTCTTTATCAAC 59.225 50.000 0.00 0.00 40.93 3.18
6498 9742 7.366847 TCTGTTAATAGAAATCAGAGAGGGG 57.633 40.000 0.00 0.00 32.49 4.79
6506 9750 7.119699 CACTGTGGCTTCTGTTAATAGAAATCA 59.880 37.037 14.62 12.37 36.34 2.57
6546 9790 2.159824 GCCAGTTTCGCTTTAGTTCCTC 59.840 50.000 0.00 0.00 0.00 3.71
6566 9810 0.101040 TTTGCTGCTGTTCTGTGTGC 59.899 50.000 0.00 0.00 0.00 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.