Multiple sequence alignment - TraesCS5A01G053200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G053200 chr5A 100.000 2354 0 0 1 2354 48180446 48178093 0.000000e+00 4348
1 TraesCS5A01G053200 chr5A 78.079 406 31 21 1964 2345 48342259 48341888 1.100000e-48 204
2 TraesCS5A01G053200 chr1A 94.954 1308 66 0 628 1935 3977460 3978767 0.000000e+00 2050
3 TraesCS5A01G053200 chr1A 94.729 1309 65 3 628 1934 536673004 536671698 0.000000e+00 2032
4 TraesCS5A01G053200 chr1A 94.661 1311 66 3 628 1935 497343325 497342016 0.000000e+00 2030
5 TraesCS5A01G053200 chr1A 93.824 421 22 4 23 439 570245803 570245383 4.270000e-177 630
6 TraesCS5A01G053200 chr1A 92.453 424 25 6 23 440 480745406 480744984 1.200000e-167 599
7 TraesCS5A01G053200 chr1D 93.764 1315 74 6 628 1935 60171817 60170504 0.000000e+00 1967
8 TraesCS5A01G053200 chr2A 94.646 1270 63 5 628 1895 551453284 551452018 0.000000e+00 1964
9 TraesCS5A01G053200 chr2D 93.683 1314 77 4 628 1935 73126873 73125560 0.000000e+00 1962
10 TraesCS5A01G053200 chr2D 93.222 1313 82 6 628 1935 621748803 621750113 0.000000e+00 1925
11 TraesCS5A01G053200 chr3D 93.374 1313 82 4 628 1935 584701392 584700080 0.000000e+00 1938
12 TraesCS5A01G053200 chr7D 93.222 1313 82 6 628 1935 497560907 497562217 0.000000e+00 1925
13 TraesCS5A01G053200 chr6A 98.413 441 6 1 1 440 590078363 590078803 0.000000e+00 774
14 TraesCS5A01G053200 chr6A 86.935 199 25 1 23 221 196314555 196314358 3.040000e-54 222
15 TraesCS5A01G053200 chr7A 97.500 440 10 1 1 439 17437086 17437525 0.000000e+00 750
16 TraesCS5A01G053200 chr2B 92.435 423 26 5 23 440 321737309 321737730 1.200000e-167 599
17 TraesCS5A01G053200 chr2B 91.447 304 24 1 142 443 564861260 564861563 1.300000e-112 416
18 TraesCS5A01G053200 chr3A 91.627 418 33 2 23 439 192824158 192824574 5.640000e-161 577
19 TraesCS5A01G053200 chr5D 90.499 421 36 3 23 442 396832550 396832133 9.510000e-154 553
20 TraesCS5A01G053200 chr5D 82.908 392 39 12 1964 2344 59888511 59888137 6.270000e-86 327
21 TraesCS5A01G053200 chr5D 89.873 237 15 3 2119 2354 59832745 59832517 1.770000e-76 296
22 TraesCS5A01G053200 chr5D 83.163 196 19 8 1934 2127 59833084 59832901 1.450000e-37 167
23 TraesCS5A01G053200 chr7B 89.882 425 37 5 20 439 88858836 88858413 2.060000e-150 542
24 TraesCS5A01G053200 chr5B 85.308 422 29 17 1934 2354 70906832 70907221 2.820000e-109 405
25 TraesCS5A01G053200 chr5B 89.236 288 20 3 2057 2344 70841750 70842026 1.340000e-92 350


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G053200 chr5A 48178093 48180446 2353 True 4348.0 4348 100.000 1 2354 1 chr5A.!!$R1 2353
1 TraesCS5A01G053200 chr1A 3977460 3978767 1307 False 2050.0 2050 94.954 628 1935 1 chr1A.!!$F1 1307
2 TraesCS5A01G053200 chr1A 536671698 536673004 1306 True 2032.0 2032 94.729 628 1934 1 chr1A.!!$R3 1306
3 TraesCS5A01G053200 chr1A 497342016 497343325 1309 True 2030.0 2030 94.661 628 1935 1 chr1A.!!$R2 1307
4 TraesCS5A01G053200 chr1D 60170504 60171817 1313 True 1967.0 1967 93.764 628 1935 1 chr1D.!!$R1 1307
5 TraesCS5A01G053200 chr2A 551452018 551453284 1266 True 1964.0 1964 94.646 628 1895 1 chr2A.!!$R1 1267
6 TraesCS5A01G053200 chr2D 73125560 73126873 1313 True 1962.0 1962 93.683 628 1935 1 chr2D.!!$R1 1307
7 TraesCS5A01G053200 chr2D 621748803 621750113 1310 False 1925.0 1925 93.222 628 1935 1 chr2D.!!$F1 1307
8 TraesCS5A01G053200 chr3D 584700080 584701392 1312 True 1938.0 1938 93.374 628 1935 1 chr3D.!!$R1 1307
9 TraesCS5A01G053200 chr7D 497560907 497562217 1310 False 1925.0 1925 93.222 628 1935 1 chr7D.!!$F1 1307
10 TraesCS5A01G053200 chr5D 59832517 59833084 567 True 231.5 296 86.518 1934 2354 2 chr5D.!!$R3 420

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
29 30 0.032130 CCTAATCAGGCTAAGCGCGA 59.968 55.0 12.10 0.0 40.44 5.87 F
437 438 0.035056 AATTTGCTAGCTCCGCCACT 60.035 50.0 17.23 0.0 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1284 1290 0.042731 CCACTCCTGAACCCCTCCTA 59.957 60.0 0.00 0.0 0.00 2.94 R
2055 2063 0.242555 CCACGGTTGCGCCTTTATTT 59.757 50.0 4.18 0.0 34.25 1.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.483954 CACACCTGGGCCTAATCAG 57.516 57.895 4.53 0.34 0.00 2.90
28 29 2.522060 CCTAATCAGGCTAAGCGCG 58.478 57.895 0.00 0.00 40.44 6.86
29 30 0.032130 CCTAATCAGGCTAAGCGCGA 59.968 55.000 12.10 0.00 40.44 5.87
30 31 1.538204 CCTAATCAGGCTAAGCGCGAA 60.538 52.381 12.10 0.00 40.44 4.70
31 32 2.201732 CTAATCAGGCTAAGCGCGAAA 58.798 47.619 12.10 0.00 40.44 3.46
32 33 1.009829 AATCAGGCTAAGCGCGAAAG 58.990 50.000 12.10 4.06 40.44 2.62
33 34 0.108138 ATCAGGCTAAGCGCGAAAGT 60.108 50.000 12.10 0.00 40.44 2.66
34 35 0.736325 TCAGGCTAAGCGCGAAAGTC 60.736 55.000 12.10 4.53 40.44 3.01
35 36 1.014044 CAGGCTAAGCGCGAAAGTCA 61.014 55.000 12.10 0.00 40.44 3.41
36 37 0.320421 AGGCTAAGCGCGAAAGTCAA 60.320 50.000 12.10 0.00 40.44 3.18
37 38 0.515564 GGCTAAGCGCGAAAGTCAAA 59.484 50.000 12.10 0.00 40.44 2.69
38 39 1.464189 GGCTAAGCGCGAAAGTCAAAG 60.464 52.381 12.10 0.00 40.44 2.77
39 40 1.870765 CTAAGCGCGAAAGTCAAAGC 58.129 50.000 12.10 0.00 0.00 3.51
43 44 2.637025 GCGAAAGTCAAAGCGGCA 59.363 55.556 1.45 0.00 0.00 5.69
44 45 1.441016 GCGAAAGTCAAAGCGGCAG 60.441 57.895 1.45 0.00 0.00 4.85
45 46 1.441016 CGAAAGTCAAAGCGGCAGC 60.441 57.895 0.00 0.00 45.58 5.25
46 47 1.081175 GAAAGTCAAAGCGGCAGCC 60.081 57.895 4.82 0.00 46.67 4.85
47 48 2.477972 GAAAGTCAAAGCGGCAGCCC 62.478 60.000 5.63 0.00 46.67 5.19
50 51 4.284550 TCAAAGCGGCAGCCCCTT 62.285 61.111 5.42 5.42 46.67 3.95
51 52 4.060038 CAAAGCGGCAGCCCCTTG 62.060 66.667 12.33 6.29 46.67 3.61
52 53 4.603535 AAAGCGGCAGCCCCTTGT 62.604 61.111 12.33 0.45 46.67 3.16
53 54 3.204467 AAAGCGGCAGCCCCTTGTA 62.204 57.895 12.33 0.00 46.67 2.41
54 55 2.499303 AAAGCGGCAGCCCCTTGTAT 62.499 55.000 12.33 0.00 46.67 2.29
55 56 1.632018 AAGCGGCAGCCCCTTGTATA 61.632 55.000 10.79 0.00 46.67 1.47
56 57 1.153046 GCGGCAGCCCCTTGTATAA 60.153 57.895 5.63 0.00 37.42 0.98
57 58 0.750182 GCGGCAGCCCCTTGTATAAA 60.750 55.000 5.63 0.00 37.42 1.40
58 59 1.981256 CGGCAGCCCCTTGTATAAAT 58.019 50.000 5.63 0.00 0.00 1.40
59 60 2.306847 CGGCAGCCCCTTGTATAAATT 58.693 47.619 5.63 0.00 0.00 1.82
60 61 2.293399 CGGCAGCCCCTTGTATAAATTC 59.707 50.000 5.63 0.00 0.00 2.17
61 62 2.628178 GGCAGCCCCTTGTATAAATTCC 59.372 50.000 0.00 0.00 0.00 3.01
62 63 3.295973 GCAGCCCCTTGTATAAATTCCA 58.704 45.455 0.00 0.00 0.00 3.53
63 64 3.068165 GCAGCCCCTTGTATAAATTCCAC 59.932 47.826 0.00 0.00 0.00 4.02
64 65 4.536765 CAGCCCCTTGTATAAATTCCACT 58.463 43.478 0.00 0.00 0.00 4.00
65 66 4.956075 CAGCCCCTTGTATAAATTCCACTT 59.044 41.667 0.00 0.00 0.00 3.16
66 67 5.067805 CAGCCCCTTGTATAAATTCCACTTC 59.932 44.000 0.00 0.00 0.00 3.01
67 68 4.036380 GCCCCTTGTATAAATTCCACTTCG 59.964 45.833 0.00 0.00 0.00 3.79
68 69 4.578928 CCCCTTGTATAAATTCCACTTCGG 59.421 45.833 0.00 0.00 0.00 4.30
69 70 4.036380 CCCTTGTATAAATTCCACTTCGGC 59.964 45.833 0.00 0.00 33.14 5.54
70 71 4.881850 CCTTGTATAAATTCCACTTCGGCT 59.118 41.667 0.00 0.00 33.14 5.52
71 72 5.007724 CCTTGTATAAATTCCACTTCGGCTC 59.992 44.000 0.00 0.00 33.14 4.70
72 73 4.448210 TGTATAAATTCCACTTCGGCTCC 58.552 43.478 0.00 0.00 33.14 4.70
73 74 2.018542 TAAATTCCACTTCGGCTCCG 57.981 50.000 1.14 1.14 41.35 4.63
74 75 0.676782 AAATTCCACTTCGGCTCCGG 60.677 55.000 8.59 0.00 40.25 5.14
75 76 3.682292 ATTCCACTTCGGCTCCGGC 62.682 63.158 8.59 0.00 40.25 6.13
86 87 4.473520 CTCCGGCGGATGGTGCTT 62.474 66.667 31.23 0.00 0.00 3.91
87 88 4.776322 TCCGGCGGATGGTGCTTG 62.776 66.667 27.46 0.00 0.00 4.01
89 90 2.125310 CGGCGGATGGTGCTTGTA 60.125 61.111 0.00 0.00 0.00 2.41
90 91 1.523711 CGGCGGATGGTGCTTGTAT 60.524 57.895 0.00 0.00 0.00 2.29
91 92 1.095228 CGGCGGATGGTGCTTGTATT 61.095 55.000 0.00 0.00 0.00 1.89
92 93 1.808512 CGGCGGATGGTGCTTGTATTA 60.809 52.381 0.00 0.00 0.00 0.98
93 94 1.873591 GGCGGATGGTGCTTGTATTAG 59.126 52.381 0.00 0.00 0.00 1.73
94 95 2.561569 GCGGATGGTGCTTGTATTAGT 58.438 47.619 0.00 0.00 0.00 2.24
95 96 2.544267 GCGGATGGTGCTTGTATTAGTC 59.456 50.000 0.00 0.00 0.00 2.59
96 97 3.792401 CGGATGGTGCTTGTATTAGTCA 58.208 45.455 0.00 0.00 0.00 3.41
97 98 3.555956 CGGATGGTGCTTGTATTAGTCAC 59.444 47.826 0.00 0.00 0.00 3.67
98 99 3.555956 GGATGGTGCTTGTATTAGTCACG 59.444 47.826 0.00 0.00 0.00 4.35
99 100 3.945981 TGGTGCTTGTATTAGTCACGA 57.054 42.857 0.00 0.00 0.00 4.35
100 101 4.465632 TGGTGCTTGTATTAGTCACGAT 57.534 40.909 0.00 0.00 0.00 3.73
101 102 4.430007 TGGTGCTTGTATTAGTCACGATC 58.570 43.478 0.00 0.00 0.00 3.69
102 103 3.486108 GGTGCTTGTATTAGTCACGATCG 59.514 47.826 14.88 14.88 0.00 3.69
103 104 3.486108 GTGCTTGTATTAGTCACGATCGG 59.514 47.826 20.98 8.65 0.00 4.18
104 105 2.471743 GCTTGTATTAGTCACGATCGGC 59.528 50.000 20.98 9.18 0.00 5.54
105 106 3.702330 CTTGTATTAGTCACGATCGGCA 58.298 45.455 20.98 1.58 0.00 5.69
106 107 3.074504 TGTATTAGTCACGATCGGCAC 57.925 47.619 20.98 14.82 0.00 5.01
107 108 2.686405 TGTATTAGTCACGATCGGCACT 59.314 45.455 20.98 20.87 0.00 4.40
108 109 2.961526 ATTAGTCACGATCGGCACTT 57.038 45.000 21.82 6.77 0.00 3.16
109 110 2.273370 TTAGTCACGATCGGCACTTC 57.727 50.000 21.82 6.69 0.00 3.01
110 111 1.170442 TAGTCACGATCGGCACTTCA 58.830 50.000 21.82 6.77 0.00 3.02
111 112 0.317160 AGTCACGATCGGCACTTCAA 59.683 50.000 20.98 0.00 0.00 2.69
112 113 1.066858 AGTCACGATCGGCACTTCAAT 60.067 47.619 20.98 0.00 0.00 2.57
113 114 1.732259 GTCACGATCGGCACTTCAATT 59.268 47.619 20.98 0.00 0.00 2.32
114 115 1.999735 TCACGATCGGCACTTCAATTC 59.000 47.619 20.98 0.00 0.00 2.17
115 116 1.731709 CACGATCGGCACTTCAATTCA 59.268 47.619 20.98 0.00 0.00 2.57
116 117 2.159430 CACGATCGGCACTTCAATTCAA 59.841 45.455 20.98 0.00 0.00 2.69
117 118 3.009723 ACGATCGGCACTTCAATTCAAT 58.990 40.909 20.98 0.00 0.00 2.57
118 119 3.181507 ACGATCGGCACTTCAATTCAATG 60.182 43.478 20.98 0.00 0.00 2.82
119 120 3.063861 CGATCGGCACTTCAATTCAATGA 59.936 43.478 7.38 0.00 0.00 2.57
120 121 4.437255 CGATCGGCACTTCAATTCAATGAA 60.437 41.667 7.38 0.00 37.70 2.57
121 122 4.844998 TCGGCACTTCAATTCAATGAAA 57.155 36.364 0.00 0.00 38.75 2.69
122 123 5.193663 TCGGCACTTCAATTCAATGAAAA 57.806 34.783 0.00 0.00 38.75 2.29
123 124 5.782047 TCGGCACTTCAATTCAATGAAAAT 58.218 33.333 0.00 0.00 38.75 1.82
124 125 6.222389 TCGGCACTTCAATTCAATGAAAATT 58.778 32.000 0.00 0.00 38.75 1.82
125 126 6.365789 TCGGCACTTCAATTCAATGAAAATTC 59.634 34.615 0.00 0.00 38.75 2.17
126 127 6.366877 CGGCACTTCAATTCAATGAAAATTCT 59.633 34.615 0.00 0.00 38.75 2.40
127 128 7.541783 CGGCACTTCAATTCAATGAAAATTCTA 59.458 33.333 0.00 0.00 38.75 2.10
128 129 9.374838 GGCACTTCAATTCAATGAAAATTCTAT 57.625 29.630 0.00 0.00 38.75 1.98
153 154 9.905713 ATAATCTGGTAATGTGTTGTATCTTGT 57.094 29.630 0.00 0.00 0.00 3.16
155 156 9.733556 AATCTGGTAATGTGTTGTATCTTGTAA 57.266 29.630 0.00 0.00 0.00 2.41
156 157 9.733556 ATCTGGTAATGTGTTGTATCTTGTAAA 57.266 29.630 0.00 0.00 0.00 2.01
157 158 9.733556 TCTGGTAATGTGTTGTATCTTGTAAAT 57.266 29.630 0.00 0.00 0.00 1.40
188 189 7.621428 TTTTTGCACTTCAATTCAATGGAAA 57.379 28.000 0.00 0.00 36.43 3.13
189 190 7.804843 TTTTGCACTTCAATTCAATGGAAAT 57.195 28.000 0.00 0.00 36.43 2.17
190 191 7.804843 TTTGCACTTCAATTCAATGGAAATT 57.195 28.000 0.00 0.00 36.43 1.82
191 192 7.804843 TTGCACTTCAATTCAATGGAAATTT 57.195 28.000 0.00 0.00 36.43 1.82
192 193 8.899427 TTGCACTTCAATTCAATGGAAATTTA 57.101 26.923 0.00 0.00 36.43 1.40
193 194 8.899427 TGCACTTCAATTCAATGGAAATTTAA 57.101 26.923 0.00 0.00 36.43 1.52
194 195 9.504708 TGCACTTCAATTCAATGGAAATTTAAT 57.495 25.926 0.00 0.00 36.43 1.40
230 231 9.979578 ATGAGTTGTATCTTGTAGATTCTCATC 57.020 33.333 13.71 0.00 35.51 2.92
231 232 9.194972 TGAGTTGTATCTTGTAGATTCTCATCT 57.805 33.333 0.00 0.00 42.83 2.90
232 233 9.462174 GAGTTGTATCTTGTAGATTCTCATCTG 57.538 37.037 0.00 0.00 40.28 2.90
233 234 8.976353 AGTTGTATCTTGTAGATTCTCATCTGT 58.024 33.333 0.00 0.00 40.28 3.41
234 235 9.029243 GTTGTATCTTGTAGATTCTCATCTGTG 57.971 37.037 0.00 0.00 40.28 3.66
235 236 7.205992 TGTATCTTGTAGATTCTCATCTGTGC 58.794 38.462 0.00 0.00 40.28 4.57
236 237 5.665916 TCTTGTAGATTCTCATCTGTGCA 57.334 39.130 0.00 0.00 40.28 4.57
237 238 5.414360 TCTTGTAGATTCTCATCTGTGCAC 58.586 41.667 10.75 10.75 40.28 4.57
238 239 3.774066 TGTAGATTCTCATCTGTGCACG 58.226 45.455 13.13 7.36 40.28 5.34
239 240 3.443681 TGTAGATTCTCATCTGTGCACGA 59.556 43.478 13.13 12.78 40.28 4.35
240 241 3.162202 AGATTCTCATCTGTGCACGAG 57.838 47.619 13.13 12.40 38.44 4.18
241 242 2.159128 AGATTCTCATCTGTGCACGAGG 60.159 50.000 13.13 13.83 38.44 4.63
242 243 1.256812 TTCTCATCTGTGCACGAGGA 58.743 50.000 19.40 19.40 0.00 3.71
243 244 1.478631 TCTCATCTGTGCACGAGGAT 58.521 50.000 20.34 16.35 0.00 3.24
244 245 1.135721 TCTCATCTGTGCACGAGGATG 59.864 52.381 26.86 26.86 37.49 3.51
245 246 1.135721 CTCATCTGTGCACGAGGATGA 59.864 52.381 29.98 29.98 41.16 2.92
246 247 1.550072 TCATCTGTGCACGAGGATGAA 59.450 47.619 30.02 20.41 40.69 2.57
247 248 1.662629 CATCTGTGCACGAGGATGAAC 59.337 52.381 27.90 0.03 38.14 3.18
248 249 0.678950 TCTGTGCACGAGGATGAACA 59.321 50.000 13.13 0.00 35.65 3.18
249 250 1.276138 TCTGTGCACGAGGATGAACAT 59.724 47.619 13.13 0.00 37.51 2.71
250 251 1.662629 CTGTGCACGAGGATGAACATC 59.337 52.381 13.13 6.28 37.51 3.06
257 258 3.377346 CGAGGATGAACATCGGAGATT 57.623 47.619 8.41 0.00 46.77 2.40
258 259 3.055591 CGAGGATGAACATCGGAGATTG 58.944 50.000 8.41 0.00 46.77 2.67
259 260 3.397482 GAGGATGAACATCGGAGATTGG 58.603 50.000 8.41 0.00 45.12 3.16
260 261 3.041211 AGGATGAACATCGGAGATTGGA 58.959 45.455 8.41 0.00 45.12 3.53
261 262 3.455910 AGGATGAACATCGGAGATTGGAA 59.544 43.478 8.41 0.00 45.12 3.53
262 263 4.103785 AGGATGAACATCGGAGATTGGAAT 59.896 41.667 8.41 0.00 45.12 3.01
263 264 4.823989 GGATGAACATCGGAGATTGGAATT 59.176 41.667 8.41 0.00 45.12 2.17
264 265 5.300286 GGATGAACATCGGAGATTGGAATTT 59.700 40.000 8.41 0.00 45.12 1.82
265 266 6.183360 GGATGAACATCGGAGATTGGAATTTT 60.183 38.462 8.41 0.00 45.12 1.82
266 267 7.013274 GGATGAACATCGGAGATTGGAATTTTA 59.987 37.037 8.41 0.00 45.12 1.52
267 268 7.880160 TGAACATCGGAGATTGGAATTTTAT 57.120 32.000 0.00 0.00 45.12 1.40
268 269 8.292444 TGAACATCGGAGATTGGAATTTTATT 57.708 30.769 0.00 0.00 45.12 1.40
269 270 8.748412 TGAACATCGGAGATTGGAATTTTATTT 58.252 29.630 0.00 0.00 45.12 1.40
270 271 8.931385 AACATCGGAGATTGGAATTTTATTTG 57.069 30.769 0.00 0.00 45.12 2.32
271 272 7.491682 ACATCGGAGATTGGAATTTTATTTGG 58.508 34.615 0.00 0.00 45.12 3.28
272 273 7.124147 ACATCGGAGATTGGAATTTTATTTGGT 59.876 33.333 0.00 0.00 45.12 3.67
273 274 8.629158 CATCGGAGATTGGAATTTTATTTGGTA 58.371 33.333 0.00 0.00 45.12 3.25
274 275 8.582657 TCGGAGATTGGAATTTTATTTGGTAA 57.417 30.769 0.00 0.00 0.00 2.85
275 276 9.026121 TCGGAGATTGGAATTTTATTTGGTAAA 57.974 29.630 0.00 0.00 0.00 2.01
276 277 9.816354 CGGAGATTGGAATTTTATTTGGTAAAT 57.184 29.630 0.00 0.00 32.56 1.40
347 348 7.702386 TGTGCATATTACACATGATGTTTACC 58.298 34.615 0.00 0.00 42.88 2.85
348 349 7.555914 TGTGCATATTACACATGATGTTTACCT 59.444 33.333 0.00 0.00 42.88 3.08
349 350 9.051679 GTGCATATTACACATGATGTTTACCTA 57.948 33.333 0.00 0.00 43.19 3.08
350 351 9.620259 TGCATATTACACATGATGTTTACCTAA 57.380 29.630 0.00 0.00 43.19 2.69
379 380 6.222038 TGATACTTCTGGTGTTGATAGACC 57.778 41.667 0.00 0.00 38.19 3.85
380 381 5.719563 TGATACTTCTGGTGTTGATAGACCA 59.280 40.000 0.00 0.00 44.80 4.02
381 382 4.974645 ACTTCTGGTGTTGATAGACCAA 57.025 40.909 0.00 0.00 46.08 3.67
382 383 5.304686 ACTTCTGGTGTTGATAGACCAAA 57.695 39.130 0.00 0.00 46.08 3.28
383 384 5.308825 ACTTCTGGTGTTGATAGACCAAAG 58.691 41.667 0.00 0.00 46.08 2.77
384 385 4.974645 TCTGGTGTTGATAGACCAAAGT 57.025 40.909 0.00 0.00 46.08 2.66
385 386 6.042781 ACTTCTGGTGTTGATAGACCAAAGTA 59.957 38.462 14.32 0.00 46.08 2.24
386 387 6.428083 TCTGGTGTTGATAGACCAAAGTAA 57.572 37.500 0.00 0.00 46.08 2.24
387 388 6.833041 TCTGGTGTTGATAGACCAAAGTAAA 58.167 36.000 0.00 0.00 46.08 2.01
388 389 7.458397 TCTGGTGTTGATAGACCAAAGTAAAT 58.542 34.615 0.00 0.00 46.08 1.40
389 390 7.942341 TCTGGTGTTGATAGACCAAAGTAAATT 59.058 33.333 0.00 0.00 46.08 1.82
390 391 8.472007 TGGTGTTGATAGACCAAAGTAAATTT 57.528 30.769 0.00 0.00 44.10 1.82
391 392 8.919145 TGGTGTTGATAGACCAAAGTAAATTTT 58.081 29.630 0.00 0.00 44.10 1.82
399 400 7.924103 AGACCAAAGTAAATTTTAGTTTGCG 57.076 32.000 28.50 24.60 36.84 4.85
400 401 7.485810 AGACCAAAGTAAATTTTAGTTTGCGT 58.514 30.769 28.50 26.42 36.84 5.24
401 402 7.646526 AGACCAAAGTAAATTTTAGTTTGCGTC 59.353 33.333 30.54 30.54 37.73 5.19
402 403 6.415573 ACCAAAGTAAATTTTAGTTTGCGTCG 59.584 34.615 28.50 21.47 36.84 5.12
403 404 6.415573 CCAAAGTAAATTTTAGTTTGCGTCGT 59.584 34.615 28.50 6.51 36.84 4.34
404 405 6.963017 AAGTAAATTTTAGTTTGCGTCGTG 57.037 33.333 0.00 0.00 0.00 4.35
405 406 4.907582 AGTAAATTTTAGTTTGCGTCGTGC 59.092 37.500 0.00 0.00 46.70 5.34
406 407 2.325509 ATTTTAGTTTGCGTCGTGCC 57.674 45.000 0.00 0.00 45.60 5.01
407 408 0.308376 TTTTAGTTTGCGTCGTGCCC 59.692 50.000 0.00 0.00 45.60 5.36
408 409 0.814410 TTTAGTTTGCGTCGTGCCCA 60.814 50.000 0.00 0.00 45.60 5.36
409 410 1.225376 TTAGTTTGCGTCGTGCCCAG 61.225 55.000 0.00 0.00 45.60 4.45
410 411 4.025401 GTTTGCGTCGTGCCCAGG 62.025 66.667 0.00 0.00 45.60 4.45
415 416 4.680237 CGTCGTGCCCAGGCTTCA 62.680 66.667 10.58 0.00 42.51 3.02
416 417 2.281484 GTCGTGCCCAGGCTTCAA 60.281 61.111 10.58 0.00 42.51 2.69
417 418 2.281484 TCGTGCCCAGGCTTCAAC 60.281 61.111 10.58 0.00 42.51 3.18
418 419 2.594303 CGTGCCCAGGCTTCAACA 60.594 61.111 10.58 0.00 42.51 3.33
419 420 2.192861 CGTGCCCAGGCTTCAACAA 61.193 57.895 10.58 0.00 42.51 2.83
420 421 1.526575 CGTGCCCAGGCTTCAACAAT 61.527 55.000 10.58 0.00 42.51 2.71
421 422 0.681175 GTGCCCAGGCTTCAACAATT 59.319 50.000 10.58 0.00 42.51 2.32
422 423 1.070601 GTGCCCAGGCTTCAACAATTT 59.929 47.619 10.58 0.00 42.51 1.82
423 424 1.070445 TGCCCAGGCTTCAACAATTTG 59.930 47.619 10.58 0.00 42.51 2.32
424 425 1.799544 CCCAGGCTTCAACAATTTGC 58.200 50.000 0.00 0.00 32.17 3.68
425 426 1.345415 CCCAGGCTTCAACAATTTGCT 59.655 47.619 0.00 0.00 32.17 3.91
426 427 2.562298 CCCAGGCTTCAACAATTTGCTA 59.438 45.455 0.00 0.00 32.17 3.49
427 428 3.367703 CCCAGGCTTCAACAATTTGCTAG 60.368 47.826 0.00 0.00 32.17 3.42
428 429 3.248266 CAGGCTTCAACAATTTGCTAGC 58.752 45.455 8.10 8.10 38.44 3.42
429 430 3.057033 CAGGCTTCAACAATTTGCTAGCT 60.057 43.478 17.23 0.00 38.83 3.32
430 431 3.192212 AGGCTTCAACAATTTGCTAGCTC 59.808 43.478 17.23 0.00 38.83 4.09
431 432 3.505836 GCTTCAACAATTTGCTAGCTCC 58.494 45.455 17.23 0.00 37.25 4.70
432 433 3.751621 CTTCAACAATTTGCTAGCTCCG 58.248 45.455 17.23 2.60 32.17 4.63
433 434 1.468520 TCAACAATTTGCTAGCTCCGC 59.531 47.619 17.23 0.00 32.17 5.54
434 435 0.811281 AACAATTTGCTAGCTCCGCC 59.189 50.000 17.23 0.00 0.00 6.13
435 436 0.322456 ACAATTTGCTAGCTCCGCCA 60.322 50.000 17.23 0.00 0.00 5.69
436 437 0.099436 CAATTTGCTAGCTCCGCCAC 59.901 55.000 17.23 0.00 0.00 5.01
437 438 0.035056 AATTTGCTAGCTCCGCCACT 60.035 50.000 17.23 0.00 0.00 4.00
438 439 0.745845 ATTTGCTAGCTCCGCCACTG 60.746 55.000 17.23 0.00 0.00 3.66
439 440 2.803155 TTTGCTAGCTCCGCCACTGG 62.803 60.000 17.23 0.00 0.00 4.00
440 441 3.775654 GCTAGCTCCGCCACTGGT 61.776 66.667 7.70 0.00 0.00 4.00
441 442 2.982130 CTAGCTCCGCCACTGGTT 59.018 61.111 0.00 0.00 0.00 3.67
442 443 1.153549 CTAGCTCCGCCACTGGTTC 60.154 63.158 0.00 0.00 0.00 3.62
443 444 2.890847 CTAGCTCCGCCACTGGTTCG 62.891 65.000 0.00 0.00 0.00 3.95
445 446 4.680237 CTCCGCCACTGGTTCGCA 62.680 66.667 0.00 0.00 0.00 5.10
446 447 4.243008 TCCGCCACTGGTTCGCAA 62.243 61.111 0.00 0.00 0.00 4.85
447 448 3.726517 CCGCCACTGGTTCGCAAG 61.727 66.667 0.00 0.00 0.00 4.01
461 462 3.696281 TCGCAAGATGCCACATAATTG 57.304 42.857 0.00 0.00 45.01 2.32
462 463 3.016031 TCGCAAGATGCCACATAATTGT 58.984 40.909 0.00 0.00 45.01 2.71
463 464 3.443329 TCGCAAGATGCCACATAATTGTT 59.557 39.130 0.00 0.00 45.01 2.83
464 465 3.548668 CGCAAGATGCCACATAATTGTTG 59.451 43.478 0.00 0.00 41.12 3.33
465 466 4.497300 GCAAGATGCCACATAATTGTTGT 58.503 39.130 0.00 0.00 37.42 3.32
466 467 4.327898 GCAAGATGCCACATAATTGTTGTG 59.672 41.667 13.57 13.57 43.25 3.33
467 468 5.712004 CAAGATGCCACATAATTGTTGTGA 58.288 37.500 19.36 6.22 45.83 3.58
468 469 6.334989 CAAGATGCCACATAATTGTTGTGAT 58.665 36.000 19.36 9.70 45.83 3.06
469 470 6.140303 AGATGCCACATAATTGTTGTGATC 57.860 37.500 19.36 15.51 45.83 2.92
470 471 5.653330 AGATGCCACATAATTGTTGTGATCA 59.347 36.000 19.36 16.53 45.83 2.92
471 472 5.718724 TGCCACATAATTGTTGTGATCAA 57.281 34.783 19.36 4.88 45.83 2.57
472 473 5.712004 TGCCACATAATTGTTGTGATCAAG 58.288 37.500 19.36 7.93 45.83 3.02
473 474 5.243507 TGCCACATAATTGTTGTGATCAAGT 59.756 36.000 19.36 0.00 45.83 3.16
474 475 6.158598 GCCACATAATTGTTGTGATCAAGTT 58.841 36.000 19.36 0.00 45.83 2.66
475 476 6.089820 GCCACATAATTGTTGTGATCAAGTTG 59.910 38.462 19.36 0.00 45.83 3.16
476 477 6.587226 CCACATAATTGTTGTGATCAAGTTGG 59.413 38.462 19.36 2.29 45.83 3.77
477 478 7.369607 CACATAATTGTTGTGATCAAGTTGGA 58.630 34.615 14.80 0.00 45.83 3.53
478 479 8.030692 CACATAATTGTTGTGATCAAGTTGGAT 58.969 33.333 14.80 0.00 45.83 3.41
479 480 9.241919 ACATAATTGTTGTGATCAAGTTGGATA 57.758 29.630 0.00 0.00 33.97 2.59
480 481 9.726232 CATAATTGTTGTGATCAAGTTGGATAG 57.274 33.333 0.00 0.00 33.97 2.08
481 482 6.764308 ATTGTTGTGATCAAGTTGGATAGG 57.236 37.500 0.00 0.00 33.97 2.57
482 483 5.497464 TGTTGTGATCAAGTTGGATAGGA 57.503 39.130 0.00 0.00 33.97 2.94
483 484 5.245531 TGTTGTGATCAAGTTGGATAGGAC 58.754 41.667 0.00 0.00 33.97 3.85
484 485 5.013079 TGTTGTGATCAAGTTGGATAGGACT 59.987 40.000 0.00 0.00 33.97 3.85
485 486 5.089970 TGTGATCAAGTTGGATAGGACTG 57.910 43.478 0.00 0.00 0.00 3.51
486 487 4.777366 TGTGATCAAGTTGGATAGGACTGA 59.223 41.667 0.00 0.00 0.00 3.41
487 488 5.426509 TGTGATCAAGTTGGATAGGACTGAT 59.573 40.000 0.00 0.00 0.00 2.90
488 489 6.070021 TGTGATCAAGTTGGATAGGACTGATT 60.070 38.462 0.00 0.00 0.00 2.57
489 490 6.259608 GTGATCAAGTTGGATAGGACTGATTG 59.740 42.308 0.00 0.00 0.00 2.67
490 491 4.517285 TCAAGTTGGATAGGACTGATTGC 58.483 43.478 2.34 0.00 0.00 3.56
491 492 3.185246 AGTTGGATAGGACTGATTGCG 57.815 47.619 0.00 0.00 0.00 4.85
492 493 2.158900 AGTTGGATAGGACTGATTGCGG 60.159 50.000 0.00 0.00 0.00 5.69
493 494 0.758734 TGGATAGGACTGATTGCGGG 59.241 55.000 0.00 0.00 0.00 6.13
494 495 0.603975 GGATAGGACTGATTGCGGGC 60.604 60.000 0.00 0.00 0.00 6.13
495 496 0.106708 GATAGGACTGATTGCGGGCA 59.893 55.000 0.00 0.00 0.00 5.36
496 497 0.107456 ATAGGACTGATTGCGGGCAG 59.893 55.000 0.00 0.00 38.10 4.85
497 498 1.971505 TAGGACTGATTGCGGGCAGG 61.972 60.000 0.00 0.00 36.47 4.85
498 499 3.512516 GACTGATTGCGGGCAGGC 61.513 66.667 0.00 0.00 36.47 4.85
499 500 4.349503 ACTGATTGCGGGCAGGCA 62.350 61.111 0.00 0.00 42.12 4.75
505 506 2.674138 TGCGGGCAGGCAAGATAA 59.326 55.556 0.00 0.00 40.59 1.75
506 507 1.748879 TGCGGGCAGGCAAGATAAC 60.749 57.895 0.00 0.00 40.59 1.89
507 508 2.823829 GCGGGCAGGCAAGATAACG 61.824 63.158 0.00 0.00 0.00 3.18
508 509 1.153449 CGGGCAGGCAAGATAACGA 60.153 57.895 0.00 0.00 0.00 3.85
509 510 1.429148 CGGGCAGGCAAGATAACGAC 61.429 60.000 0.00 0.00 0.00 4.34
510 511 1.429148 GGGCAGGCAAGATAACGACG 61.429 60.000 0.00 0.00 0.00 5.12
511 512 0.459585 GGCAGGCAAGATAACGACGA 60.460 55.000 0.00 0.00 0.00 4.20
512 513 0.924090 GCAGGCAAGATAACGACGAG 59.076 55.000 0.00 0.00 0.00 4.18
513 514 1.560923 CAGGCAAGATAACGACGAGG 58.439 55.000 0.00 0.00 0.00 4.63
514 515 0.179108 AGGCAAGATAACGACGAGGC 60.179 55.000 0.00 0.00 0.00 4.70
515 516 0.179108 GGCAAGATAACGACGAGGCT 60.179 55.000 0.00 0.00 0.00 4.58
516 517 1.201343 GCAAGATAACGACGAGGCTC 58.799 55.000 3.87 3.87 0.00 4.70
517 518 1.841450 CAAGATAACGACGAGGCTCC 58.159 55.000 9.32 0.00 0.00 4.70
518 519 1.134367 CAAGATAACGACGAGGCTCCA 59.866 52.381 9.32 0.00 0.00 3.86
519 520 1.693627 AGATAACGACGAGGCTCCAT 58.306 50.000 9.32 0.00 0.00 3.41
520 521 1.609555 AGATAACGACGAGGCTCCATC 59.390 52.381 9.32 6.15 0.00 3.51
521 522 0.674534 ATAACGACGAGGCTCCATCC 59.325 55.000 9.32 0.00 0.00 3.51
522 523 1.389609 TAACGACGAGGCTCCATCCC 61.390 60.000 9.32 0.00 0.00 3.85
523 524 3.147595 CGACGAGGCTCCATCCCA 61.148 66.667 9.32 0.00 0.00 4.37
524 525 2.721167 CGACGAGGCTCCATCCCAA 61.721 63.158 9.32 0.00 0.00 4.12
525 526 1.144936 GACGAGGCTCCATCCCAAG 59.855 63.158 9.32 0.00 0.00 3.61
526 527 1.306141 ACGAGGCTCCATCCCAAGA 60.306 57.895 9.32 0.00 0.00 3.02
527 528 0.692419 ACGAGGCTCCATCCCAAGAT 60.692 55.000 9.32 0.00 0.00 2.40
528 529 0.471617 CGAGGCTCCATCCCAAGATT 59.528 55.000 9.32 0.00 0.00 2.40
529 530 1.694150 CGAGGCTCCATCCCAAGATTA 59.306 52.381 9.32 0.00 0.00 1.75
530 531 2.304180 CGAGGCTCCATCCCAAGATTAT 59.696 50.000 9.32 0.00 0.00 1.28
531 532 3.244700 CGAGGCTCCATCCCAAGATTATT 60.245 47.826 9.32 0.00 0.00 1.40
532 533 4.020218 CGAGGCTCCATCCCAAGATTATTA 60.020 45.833 9.32 0.00 0.00 0.98
533 534 5.495640 GAGGCTCCATCCCAAGATTATTAG 58.504 45.833 2.15 0.00 0.00 1.73
534 535 5.165652 AGGCTCCATCCCAAGATTATTAGA 58.834 41.667 0.00 0.00 0.00 2.10
535 536 5.250313 AGGCTCCATCCCAAGATTATTAGAG 59.750 44.000 0.00 0.00 0.00 2.43
536 537 5.249393 GGCTCCATCCCAAGATTATTAGAGA 59.751 44.000 0.00 0.00 0.00 3.10
537 538 6.405538 GCTCCATCCCAAGATTATTAGAGAG 58.594 44.000 0.00 0.00 0.00 3.20
538 539 6.365970 TCCATCCCAAGATTATTAGAGAGC 57.634 41.667 0.00 0.00 0.00 4.09
539 540 5.846164 TCCATCCCAAGATTATTAGAGAGCA 59.154 40.000 0.00 0.00 0.00 4.26
540 541 5.936956 CCATCCCAAGATTATTAGAGAGCAC 59.063 44.000 0.00 0.00 0.00 4.40
541 542 6.239829 CCATCCCAAGATTATTAGAGAGCACT 60.240 42.308 0.00 0.00 0.00 4.40
542 543 7.038729 CCATCCCAAGATTATTAGAGAGCACTA 60.039 40.741 0.00 0.00 0.00 2.74
543 544 7.291411 TCCCAAGATTATTAGAGAGCACTAC 57.709 40.000 0.00 0.00 0.00 2.73
544 545 6.267928 TCCCAAGATTATTAGAGAGCACTACC 59.732 42.308 0.00 0.00 0.00 3.18
545 546 6.042093 CCCAAGATTATTAGAGAGCACTACCA 59.958 42.308 0.00 0.00 0.00 3.25
546 547 7.151308 CCAAGATTATTAGAGAGCACTACCAG 58.849 42.308 0.00 0.00 0.00 4.00
547 548 6.909550 AGATTATTAGAGAGCACTACCAGG 57.090 41.667 0.00 0.00 0.00 4.45
548 549 4.939052 TTATTAGAGAGCACTACCAGGC 57.061 45.455 0.00 0.00 0.00 4.85
549 550 2.534042 TTAGAGAGCACTACCAGGCT 57.466 50.000 0.00 0.00 44.48 4.58
550 551 2.534042 TAGAGAGCACTACCAGGCTT 57.466 50.000 0.00 0.00 41.22 4.35
551 552 0.901124 AGAGAGCACTACCAGGCTTG 59.099 55.000 0.00 0.00 41.22 4.01
563 564 2.679996 GGCTTGGCCGGTTGGATT 60.680 61.111 1.90 0.00 39.62 3.01
564 565 2.573340 GCTTGGCCGGTTGGATTG 59.427 61.111 1.90 0.00 37.49 2.67
565 566 2.573340 CTTGGCCGGTTGGATTGC 59.427 61.111 1.90 0.00 37.49 3.56
566 567 2.203552 TTGGCCGGTTGGATTGCA 60.204 55.556 1.90 0.00 37.49 4.08
567 568 2.490993 CTTGGCCGGTTGGATTGCAC 62.491 60.000 1.90 0.00 37.49 4.57
568 569 2.988684 GGCCGGTTGGATTGCACA 60.989 61.111 1.90 0.00 37.49 4.57
569 570 2.568090 GCCGGTTGGATTGCACAG 59.432 61.111 1.90 0.00 37.49 3.66
570 571 1.971167 GCCGGTTGGATTGCACAGA 60.971 57.895 1.90 0.00 37.49 3.41
571 572 1.875963 CCGGTTGGATTGCACAGAC 59.124 57.895 0.00 0.00 37.49 3.51
572 573 0.888736 CCGGTTGGATTGCACAGACA 60.889 55.000 0.00 0.00 37.49 3.41
573 574 0.950836 CGGTTGGATTGCACAGACAA 59.049 50.000 0.00 0.00 0.00 3.18
574 575 1.334960 CGGTTGGATTGCACAGACAAC 60.335 52.381 11.98 11.98 40.35 3.32
575 576 1.956477 GGTTGGATTGCACAGACAACT 59.044 47.619 17.07 0.00 40.75 3.16
576 577 2.030805 GGTTGGATTGCACAGACAACTC 60.031 50.000 17.07 8.18 40.75 3.01
577 578 1.511850 TGGATTGCACAGACAACTCG 58.488 50.000 0.00 0.00 31.03 4.18
578 579 1.202639 TGGATTGCACAGACAACTCGT 60.203 47.619 0.00 0.00 31.03 4.18
579 580 2.036604 TGGATTGCACAGACAACTCGTA 59.963 45.455 0.00 0.00 31.03 3.43
580 581 2.412089 GGATTGCACAGACAACTCGTAC 59.588 50.000 0.00 0.00 31.03 3.67
581 582 1.483316 TTGCACAGACAACTCGTACG 58.517 50.000 9.53 9.53 0.00 3.67
582 583 0.937699 TGCACAGACAACTCGTACGC 60.938 55.000 11.24 0.00 0.00 4.42
583 584 1.930816 GCACAGACAACTCGTACGCG 61.931 60.000 11.24 3.53 39.92 6.01
584 585 1.728426 ACAGACAACTCGTACGCGC 60.728 57.895 11.24 0.00 38.14 6.86
585 586 1.728074 CAGACAACTCGTACGCGCA 60.728 57.895 11.24 0.00 38.14 6.09
586 587 1.071019 CAGACAACTCGTACGCGCAT 61.071 55.000 11.24 0.00 38.14 4.73
587 588 0.448990 AGACAACTCGTACGCGCATA 59.551 50.000 11.24 0.00 38.14 3.14
588 589 0.564767 GACAACTCGTACGCGCATAC 59.435 55.000 11.24 5.70 38.14 2.39
589 590 0.109643 ACAACTCGTACGCGCATACA 60.110 50.000 14.60 0.27 38.14 2.29
590 591 1.197055 CAACTCGTACGCGCATACAT 58.803 50.000 14.60 0.00 38.14 2.29
591 592 1.586578 CAACTCGTACGCGCATACATT 59.413 47.619 14.60 1.84 38.14 2.71
592 593 1.197055 ACTCGTACGCGCATACATTG 58.803 50.000 14.60 5.32 38.14 2.82
593 594 1.202211 ACTCGTACGCGCATACATTGA 60.202 47.619 14.60 2.12 38.14 2.57
594 595 1.448308 CTCGTACGCGCATACATTGAG 59.552 52.381 14.60 8.37 38.14 3.02
595 596 0.111704 CGTACGCGCATACATTGAGC 60.112 55.000 14.60 0.00 46.47 4.26
602 603 3.976793 CGCATACATTGAGCAAAGGAT 57.023 42.857 0.00 0.00 0.00 3.24
603 604 3.624900 CGCATACATTGAGCAAAGGATG 58.375 45.455 6.34 6.34 34.42 3.51
617 618 1.870064 AGGATGCCCCTGAAAATTGG 58.130 50.000 0.00 0.00 45.61 3.16
618 619 0.178767 GGATGCCCCTGAAAATTGGC 59.821 55.000 0.00 0.00 44.27 4.52
621 622 3.231734 GCCCCTGAAAATTGGCAAC 57.768 52.632 0.00 0.00 43.46 4.17
622 623 0.321564 GCCCCTGAAAATTGGCAACC 60.322 55.000 0.00 0.00 43.46 3.77
623 624 1.351076 CCCCTGAAAATTGGCAACCT 58.649 50.000 0.00 0.00 0.00 3.50
624 625 1.002315 CCCCTGAAAATTGGCAACCTG 59.998 52.381 0.00 0.00 0.00 4.00
625 626 1.693606 CCCTGAAAATTGGCAACCTGT 59.306 47.619 0.00 0.00 0.00 4.00
626 627 2.548493 CCCTGAAAATTGGCAACCTGTG 60.548 50.000 0.00 0.00 0.00 3.66
672 673 0.665298 CCGATCTCTGCATCTCGACA 59.335 55.000 8.39 0.00 33.07 4.35
732 733 9.841295 AAAAGACCTTACAAAGTAGTACATCAA 57.159 29.630 2.52 0.00 0.00 2.57
737 738 8.594550 ACCTTACAAAGTAGTACATCAATGAGT 58.405 33.333 2.52 0.00 0.00 3.41
738 739 9.436957 CCTTACAAAGTAGTACATCAATGAGTT 57.563 33.333 2.52 0.00 0.00 3.01
759 760 6.183347 AGTTTGAAGCTACAATCTAGGCAAT 58.817 36.000 0.00 0.00 30.99 3.56
885 886 1.479942 CCTAGCCACATACCGGGACTA 60.480 57.143 6.32 0.00 0.00 2.59
903 904 3.608662 GGTCACACACCGGTCCGA 61.609 66.667 14.39 0.00 34.56 4.55
939 940 2.434359 CGCCGTCTTCTTCCACCC 60.434 66.667 0.00 0.00 0.00 4.61
956 957 0.841961 CCCATCCATCTCCAGAGCAA 59.158 55.000 0.00 0.00 0.00 3.91
1116 1119 4.819082 GCGGTAGATACAACGCCA 57.181 55.556 0.00 0.00 45.70 5.69
1236 1242 1.715785 TCCATGGAGGATACGATGCA 58.284 50.000 11.44 0.00 43.07 3.96
1284 1290 5.237344 CAGACTGAATTTTGGACTTTCGTCT 59.763 40.000 0.00 0.00 40.10 4.18
1310 1317 1.344087 GGGTTCAGGAGTGGATAGGGA 60.344 57.143 0.00 0.00 0.00 4.20
1350 1357 1.293963 GGAAGGGTAACGGCGTCAAC 61.294 60.000 15.17 14.99 37.60 3.18
1355 1362 0.319297 GGTAACGGCGTCAACTGACT 60.319 55.000 15.17 0.00 42.66 3.41
1395 1402 0.464916 ACGCCGACCAAAGTTTCCTT 60.465 50.000 0.00 0.00 0.00 3.36
1400 1407 1.944709 CGACCAAAGTTTCCTTCGGTT 59.055 47.619 0.00 0.00 38.13 4.44
1470 1477 0.748450 ATCCGAAACCCGCGAAGATA 59.252 50.000 8.23 0.00 36.84 1.98
1474 1481 2.160022 CCGAAACCCGCGAAGATAAAAA 59.840 45.455 8.23 0.00 36.84 1.94
1538 1545 3.283751 CTCCTTGTAGATCTCCAGACGT 58.716 50.000 0.00 0.00 0.00 4.34
1575 1582 1.815421 GTGGCCAGCGACGATCATT 60.815 57.895 5.11 0.00 0.00 2.57
1819 1826 1.827969 CCAAGACGAAGAGGATGGAGT 59.172 52.381 0.00 0.00 0.00 3.85
1981 1988 2.554032 CCGTCTCTTCCAAAACAAGCAT 59.446 45.455 0.00 0.00 0.00 3.79
1985 1992 3.054878 CTCTTCCAAAACAAGCATGCAC 58.945 45.455 21.98 0.00 0.00 4.57
1986 1993 2.429971 TCTTCCAAAACAAGCATGCACA 59.570 40.909 21.98 0.00 0.00 4.57
1987 1994 2.975732 TCCAAAACAAGCATGCACAA 57.024 40.000 21.98 0.00 0.00 3.33
1988 1995 3.472283 TCCAAAACAAGCATGCACAAT 57.528 38.095 21.98 0.00 0.00 2.71
1989 1996 3.132160 TCCAAAACAAGCATGCACAATG 58.868 40.909 21.98 14.95 39.49 2.82
1990 1997 3.132160 CCAAAACAAGCATGCACAATGA 58.868 40.909 21.98 0.00 38.72 2.57
1991 1998 3.560481 CCAAAACAAGCATGCACAATGAA 59.440 39.130 21.98 0.00 38.72 2.57
1992 1999 4.520078 CAAAACAAGCATGCACAATGAAC 58.480 39.130 21.98 0.00 38.72 3.18
2011 2019 2.442458 GACTCGTCTCCCTCCCCC 60.442 72.222 0.00 0.00 0.00 5.40
2012 2020 3.273654 ACTCGTCTCCCTCCCCCA 61.274 66.667 0.00 0.00 0.00 4.96
2013 2021 2.443016 CTCGTCTCCCTCCCCCAG 60.443 72.222 0.00 0.00 0.00 4.45
2014 2022 2.944954 TCGTCTCCCTCCCCCAGA 60.945 66.667 0.00 0.00 0.00 3.86
2015 2023 2.760385 CGTCTCCCTCCCCCAGAC 60.760 72.222 0.00 0.00 34.36 3.51
2016 2024 2.781406 GTCTCCCTCCCCCAGACT 59.219 66.667 0.00 0.00 34.79 3.24
2017 2025 1.382009 GTCTCCCTCCCCCAGACTC 60.382 68.421 0.00 0.00 34.79 3.36
2027 2035 3.939592 CTCCCCCAGACTCGAAAATAAAC 59.060 47.826 0.00 0.00 0.00 2.01
2067 2075 6.031751 ACCTGAAATAAAAATAAAGGCGCA 57.968 33.333 10.83 0.00 0.00 6.09
2068 2076 6.459923 ACCTGAAATAAAAATAAAGGCGCAA 58.540 32.000 10.83 0.00 0.00 4.85
2069 2077 6.367695 ACCTGAAATAAAAATAAAGGCGCAAC 59.632 34.615 10.83 0.00 0.00 4.17
2073 2081 2.058913 AAAATAAAGGCGCAACCGTG 57.941 45.000 10.83 0.00 46.52 4.94
2133 2305 1.344763 CGTCCTTCACCTTCCTCTTGT 59.655 52.381 0.00 0.00 0.00 3.16
2136 2308 3.323979 GTCCTTCACCTTCCTCTTGTGTA 59.676 47.826 0.00 0.00 0.00 2.90
2142 2314 4.530553 TCACCTTCCTCTTGTGTATAAGCA 59.469 41.667 0.00 0.00 0.00 3.91
2154 2326 0.812412 TATAAGCAGCCGGTTTCCGC 60.812 55.000 1.90 0.00 46.86 5.54
2212 2384 2.761213 ATACGTCCCCGTCCACCC 60.761 66.667 0.00 0.00 46.28 4.61
2214 2386 2.884179 ATACGTCCCCGTCCACCCAT 62.884 60.000 0.00 0.00 46.28 4.00
2215 2387 4.467084 CGTCCCCGTCCACCCATG 62.467 72.222 0.00 0.00 0.00 3.66
2216 2388 4.796495 GTCCCCGTCCACCCATGC 62.796 72.222 0.00 0.00 0.00 4.06
2218 2390 4.489771 CCCCGTCCACCCATGCTC 62.490 72.222 0.00 0.00 0.00 4.26
2219 2391 4.489771 CCCGTCCACCCATGCTCC 62.490 72.222 0.00 0.00 0.00 4.70
2246 2419 4.681978 GGCGGCCGGCGATCTATT 62.682 66.667 36.94 0.00 44.92 1.73
2247 2420 3.112709 GCGGCCGGCGATCTATTC 61.113 66.667 29.38 2.13 0.00 1.75
2248 2421 2.651361 CGGCCGGCGATCTATTCT 59.349 61.111 22.54 0.00 0.00 2.40
2297 2470 2.667318 TACGACGACACCGACCGAC 61.667 63.158 0.00 0.00 39.50 4.79
2298 2471 4.016629 CGACGACACCGACCGACA 62.017 66.667 0.00 0.00 39.50 4.35
2318 2491 2.263540 GCCGTTTCTCCTACCGCA 59.736 61.111 0.00 0.00 0.00 5.69
2324 2497 0.753867 TTTCTCCTACCGCACACACA 59.246 50.000 0.00 0.00 0.00 3.72
2325 2498 0.753867 TTCTCCTACCGCACACACAA 59.246 50.000 0.00 0.00 0.00 3.33
2326 2499 0.032952 TCTCCTACCGCACACACAAC 59.967 55.000 0.00 0.00 0.00 3.32
2327 2500 0.249699 CTCCTACCGCACACACAACA 60.250 55.000 0.00 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.107017 CCTGATTAGGCCCAGGTGTG 60.107 60.000 15.64 0.00 43.71 3.82
1 2 2.311287 CCTGATTAGGCCCAGGTGT 58.689 57.895 15.64 0.00 43.71 4.16
11 12 1.852942 TTCGCGCTTAGCCTGATTAG 58.147 50.000 5.56 0.00 44.76 1.73
12 13 2.201732 CTTTCGCGCTTAGCCTGATTA 58.798 47.619 5.56 0.00 44.76 1.75
13 14 1.009829 CTTTCGCGCTTAGCCTGATT 58.990 50.000 5.56 0.00 44.76 2.57
14 15 0.108138 ACTTTCGCGCTTAGCCTGAT 60.108 50.000 5.56 0.00 44.76 2.90
15 16 0.736325 GACTTTCGCGCTTAGCCTGA 60.736 55.000 5.56 0.00 44.76 3.86
16 17 1.014044 TGACTTTCGCGCTTAGCCTG 61.014 55.000 5.56 0.00 44.76 4.85
17 18 0.320421 TTGACTTTCGCGCTTAGCCT 60.320 50.000 5.56 0.00 44.76 4.58
18 19 0.515564 TTTGACTTTCGCGCTTAGCC 59.484 50.000 5.56 0.00 44.76 3.93
19 20 1.870765 CTTTGACTTTCGCGCTTAGC 58.129 50.000 5.56 0.00 43.95 3.09
20 21 1.783416 CGCTTTGACTTTCGCGCTTAG 60.783 52.381 5.56 1.96 39.11 2.18
21 22 0.162933 CGCTTTGACTTTCGCGCTTA 59.837 50.000 5.56 0.00 39.11 3.09
22 23 1.082756 CGCTTTGACTTTCGCGCTT 60.083 52.632 5.56 0.00 39.11 4.68
23 24 2.551270 CGCTTTGACTTTCGCGCT 59.449 55.556 5.56 0.00 39.11 5.92
24 25 2.499732 CCGCTTTGACTTTCGCGC 60.500 61.111 0.00 0.00 43.84 6.86
25 26 2.499732 GCCGCTTTGACTTTCGCG 60.500 61.111 0.00 0.00 44.69 5.87
26 27 1.441016 CTGCCGCTTTGACTTTCGC 60.441 57.895 0.00 0.00 0.00 4.70
27 28 1.441016 GCTGCCGCTTTGACTTTCG 60.441 57.895 0.00 0.00 0.00 3.46
28 29 1.081175 GGCTGCCGCTTTGACTTTC 60.081 57.895 1.35 0.00 36.09 2.62
29 30 2.564721 GGGCTGCCGCTTTGACTTT 61.565 57.895 13.40 0.00 36.09 2.66
30 31 2.985847 GGGCTGCCGCTTTGACTT 60.986 61.111 13.40 0.00 36.09 3.01
38 39 0.750182 TTTATACAAGGGGCTGCCGC 60.750 55.000 26.54 26.54 36.67 6.53
39 40 1.981256 ATTTATACAAGGGGCTGCCG 58.019 50.000 13.40 0.64 0.00 5.69
40 41 2.628178 GGAATTTATACAAGGGGCTGCC 59.372 50.000 11.05 11.05 0.00 4.85
41 42 3.068165 GTGGAATTTATACAAGGGGCTGC 59.932 47.826 0.00 0.00 0.00 5.25
42 43 4.536765 AGTGGAATTTATACAAGGGGCTG 58.463 43.478 0.00 0.00 0.00 4.85
43 44 4.881157 AGTGGAATTTATACAAGGGGCT 57.119 40.909 0.00 0.00 0.00 5.19
44 45 4.036380 CGAAGTGGAATTTATACAAGGGGC 59.964 45.833 0.00 0.00 0.00 5.80
45 46 4.578928 CCGAAGTGGAATTTATACAAGGGG 59.421 45.833 0.00 0.00 42.00 4.79
46 47 4.036380 GCCGAAGTGGAATTTATACAAGGG 59.964 45.833 0.00 0.00 42.00 3.95
47 48 4.881850 AGCCGAAGTGGAATTTATACAAGG 59.118 41.667 0.00 0.00 42.00 3.61
48 49 5.007724 GGAGCCGAAGTGGAATTTATACAAG 59.992 44.000 0.00 0.00 42.00 3.16
49 50 4.879545 GGAGCCGAAGTGGAATTTATACAA 59.120 41.667 0.00 0.00 42.00 2.41
50 51 4.448210 GGAGCCGAAGTGGAATTTATACA 58.552 43.478 0.00 0.00 42.00 2.29
51 52 3.493503 CGGAGCCGAAGTGGAATTTATAC 59.506 47.826 2.00 0.00 42.00 1.47
52 53 3.493699 CCGGAGCCGAAGTGGAATTTATA 60.494 47.826 11.05 0.00 42.00 0.98
53 54 2.561569 CGGAGCCGAAGTGGAATTTAT 58.438 47.619 2.00 0.00 42.00 1.40
54 55 1.406341 CCGGAGCCGAAGTGGAATTTA 60.406 52.381 11.05 0.00 42.00 1.40
55 56 0.676782 CCGGAGCCGAAGTGGAATTT 60.677 55.000 11.05 0.00 42.00 1.82
56 57 1.078426 CCGGAGCCGAAGTGGAATT 60.078 57.895 11.05 0.00 42.00 2.17
57 58 2.584608 CCGGAGCCGAAGTGGAAT 59.415 61.111 11.05 0.00 42.00 3.01
58 59 4.388499 GCCGGAGCCGAAGTGGAA 62.388 66.667 5.05 0.00 42.00 3.53
69 70 4.473520 AAGCACCATCCGCCGGAG 62.474 66.667 13.12 0.00 34.05 4.63
70 71 4.776322 CAAGCACCATCCGCCGGA 62.776 66.667 8.97 8.97 35.55 5.14
71 72 2.940890 ATACAAGCACCATCCGCCGG 62.941 60.000 0.00 0.00 0.00 6.13
72 73 1.095228 AATACAAGCACCATCCGCCG 61.095 55.000 0.00 0.00 0.00 6.46
73 74 1.873591 CTAATACAAGCACCATCCGCC 59.126 52.381 0.00 0.00 0.00 6.13
74 75 2.544267 GACTAATACAAGCACCATCCGC 59.456 50.000 0.00 0.00 0.00 5.54
75 76 3.555956 GTGACTAATACAAGCACCATCCG 59.444 47.826 0.00 0.00 0.00 4.18
76 77 3.555956 CGTGACTAATACAAGCACCATCC 59.444 47.826 0.00 0.00 0.00 3.51
77 78 4.430007 TCGTGACTAATACAAGCACCATC 58.570 43.478 0.00 0.00 0.00 3.51
78 79 4.465632 TCGTGACTAATACAAGCACCAT 57.534 40.909 0.00 0.00 0.00 3.55
79 80 3.945981 TCGTGACTAATACAAGCACCA 57.054 42.857 0.00 0.00 0.00 4.17
80 81 3.486108 CGATCGTGACTAATACAAGCACC 59.514 47.826 7.03 0.00 0.00 5.01
81 82 3.486108 CCGATCGTGACTAATACAAGCAC 59.514 47.826 15.09 0.00 0.00 4.40
82 83 3.702330 CCGATCGTGACTAATACAAGCA 58.298 45.455 15.09 0.00 0.00 3.91
83 84 2.471743 GCCGATCGTGACTAATACAAGC 59.528 50.000 15.09 1.25 0.00 4.01
84 85 3.486108 GTGCCGATCGTGACTAATACAAG 59.514 47.826 15.09 0.00 0.00 3.16
85 86 3.129813 AGTGCCGATCGTGACTAATACAA 59.870 43.478 15.09 0.00 0.00 2.41
86 87 2.686405 AGTGCCGATCGTGACTAATACA 59.314 45.455 15.09 0.00 0.00 2.29
87 88 3.351020 AGTGCCGATCGTGACTAATAC 57.649 47.619 15.09 1.39 0.00 1.89
88 89 3.379057 TGAAGTGCCGATCGTGACTAATA 59.621 43.478 15.09 3.08 0.00 0.98
89 90 2.165641 TGAAGTGCCGATCGTGACTAAT 59.834 45.455 15.09 1.29 0.00 1.73
90 91 1.542472 TGAAGTGCCGATCGTGACTAA 59.458 47.619 15.09 4.94 0.00 2.24
91 92 1.170442 TGAAGTGCCGATCGTGACTA 58.830 50.000 15.09 0.00 0.00 2.59
92 93 0.317160 TTGAAGTGCCGATCGTGACT 59.683 50.000 15.09 12.07 0.00 3.41
93 94 1.359848 ATTGAAGTGCCGATCGTGAC 58.640 50.000 15.09 9.87 0.00 3.67
94 95 1.999735 GAATTGAAGTGCCGATCGTGA 59.000 47.619 15.09 0.00 0.00 4.35
95 96 1.731709 TGAATTGAAGTGCCGATCGTG 59.268 47.619 15.09 6.80 0.00 4.35
96 97 2.093306 TGAATTGAAGTGCCGATCGT 57.907 45.000 15.09 0.00 0.00 3.73
97 98 3.063861 TCATTGAATTGAAGTGCCGATCG 59.936 43.478 8.51 8.51 0.00 3.69
98 99 4.621068 TCATTGAATTGAAGTGCCGATC 57.379 40.909 0.00 0.00 0.00 3.69
99 100 5.389859 TTTCATTGAATTGAAGTGCCGAT 57.610 34.783 0.00 0.00 36.97 4.18
100 101 4.844998 TTTCATTGAATTGAAGTGCCGA 57.155 36.364 0.00 0.00 36.97 5.54
101 102 6.366877 AGAATTTTCATTGAATTGAAGTGCCG 59.633 34.615 0.00 0.00 36.97 5.69
102 103 7.662604 AGAATTTTCATTGAATTGAAGTGCC 57.337 32.000 0.00 0.00 36.97 5.01
127 128 9.905713 ACAAGATACAACACATTACCAGATTAT 57.094 29.630 0.00 0.00 0.00 1.28
129 130 9.733556 TTACAAGATACAACACATTACCAGATT 57.266 29.630 0.00 0.00 0.00 2.40
130 131 9.733556 TTTACAAGATACAACACATTACCAGAT 57.266 29.630 0.00 0.00 0.00 2.90
131 132 9.733556 ATTTACAAGATACAACACATTACCAGA 57.266 29.630 0.00 0.00 0.00 3.86
164 165 7.621428 TTTCCATTGAATTGAAGTGCAAAAA 57.379 28.000 0.00 0.00 40.48 1.94
165 166 7.804843 ATTTCCATTGAATTGAAGTGCAAAA 57.195 28.000 0.00 0.00 40.48 2.44
166 167 7.804843 AATTTCCATTGAATTGAAGTGCAAA 57.195 28.000 0.00 0.00 40.48 3.68
167 168 7.804843 AAATTTCCATTGAATTGAAGTGCAA 57.195 28.000 0.00 0.00 41.53 4.08
168 169 8.899427 TTAAATTTCCATTGAATTGAAGTGCA 57.101 26.923 0.00 0.00 0.00 4.57
204 205 9.979578 GATGAGAATCTACAAGATACAACTCAT 57.020 33.333 17.90 17.90 40.12 2.90
205 206 9.194972 AGATGAGAATCTACAAGATACAACTCA 57.805 33.333 0.00 0.00 36.41 3.41
206 207 9.462174 CAGATGAGAATCTACAAGATACAACTC 57.538 37.037 0.00 0.00 32.89 3.01
207 208 8.976353 ACAGATGAGAATCTACAAGATACAACT 58.024 33.333 0.00 0.00 32.89 3.16
208 209 9.029243 CACAGATGAGAATCTACAAGATACAAC 57.971 37.037 0.00 0.00 32.89 3.32
209 210 7.708322 GCACAGATGAGAATCTACAAGATACAA 59.292 37.037 0.00 0.00 32.89 2.41
210 211 7.147846 TGCACAGATGAGAATCTACAAGATACA 60.148 37.037 0.00 0.00 32.89 2.29
211 212 7.168972 GTGCACAGATGAGAATCTACAAGATAC 59.831 40.741 13.17 0.00 32.89 2.24
212 213 7.205992 GTGCACAGATGAGAATCTACAAGATA 58.794 38.462 13.17 0.00 32.89 1.98
213 214 6.047870 GTGCACAGATGAGAATCTACAAGAT 58.952 40.000 13.17 0.00 36.28 2.40
214 215 5.414360 GTGCACAGATGAGAATCTACAAGA 58.586 41.667 13.17 0.00 34.92 3.02
215 216 4.267214 CGTGCACAGATGAGAATCTACAAG 59.733 45.833 18.64 0.00 34.92 3.16
216 217 4.082245 TCGTGCACAGATGAGAATCTACAA 60.082 41.667 18.64 0.00 34.92 2.41
217 218 3.443681 TCGTGCACAGATGAGAATCTACA 59.556 43.478 18.64 0.00 34.92 2.74
218 219 4.033990 TCGTGCACAGATGAGAATCTAC 57.966 45.455 18.64 0.00 34.92 2.59
219 220 3.067320 CCTCGTGCACAGATGAGAATCTA 59.933 47.826 18.64 0.00 34.92 1.98
220 221 2.159128 CCTCGTGCACAGATGAGAATCT 60.159 50.000 18.64 0.00 34.92 2.40
221 222 2.159184 TCCTCGTGCACAGATGAGAATC 60.159 50.000 18.64 0.00 31.50 2.52
222 223 1.827344 TCCTCGTGCACAGATGAGAAT 59.173 47.619 18.64 0.00 31.50 2.40
223 224 1.256812 TCCTCGTGCACAGATGAGAA 58.743 50.000 18.64 0.00 31.50 2.87
224 225 1.135721 CATCCTCGTGCACAGATGAGA 59.864 52.381 25.96 16.51 38.72 3.27
225 226 1.135721 TCATCCTCGTGCACAGATGAG 59.864 52.381 27.50 20.39 40.03 2.90
226 227 1.185315 TCATCCTCGTGCACAGATGA 58.815 50.000 27.50 27.50 42.05 2.92
227 228 1.662629 GTTCATCCTCGTGCACAGATG 59.337 52.381 24.91 24.91 37.95 2.90
228 229 1.276138 TGTTCATCCTCGTGCACAGAT 59.724 47.619 18.64 12.54 0.00 2.90
229 230 0.678950 TGTTCATCCTCGTGCACAGA 59.321 50.000 18.64 13.77 0.00 3.41
230 231 1.662629 GATGTTCATCCTCGTGCACAG 59.337 52.381 18.64 12.88 29.23 3.66
231 232 1.725641 GATGTTCATCCTCGTGCACA 58.274 50.000 18.64 3.15 30.24 4.57
232 233 0.647410 CGATGTTCATCCTCGTGCAC 59.353 55.000 6.82 6.82 31.42 4.57
233 234 0.460109 CCGATGTTCATCCTCGTGCA 60.460 55.000 7.14 0.00 33.52 4.57
234 235 0.179111 TCCGATGTTCATCCTCGTGC 60.179 55.000 7.14 0.00 33.52 5.34
235 236 1.405463 TCTCCGATGTTCATCCTCGTG 59.595 52.381 7.14 0.00 33.52 4.35
236 237 1.763968 TCTCCGATGTTCATCCTCGT 58.236 50.000 7.14 0.00 33.52 4.18
237 238 3.055591 CAATCTCCGATGTTCATCCTCG 58.944 50.000 7.14 0.00 34.77 4.63
238 239 3.070159 TCCAATCTCCGATGTTCATCCTC 59.930 47.826 7.14 0.00 0.00 3.71
239 240 3.041211 TCCAATCTCCGATGTTCATCCT 58.959 45.455 7.14 0.00 0.00 3.24
240 241 3.475566 TCCAATCTCCGATGTTCATCC 57.524 47.619 7.14 0.00 0.00 3.51
241 242 6.382869 AAATTCCAATCTCCGATGTTCATC 57.617 37.500 3.01 3.01 0.00 2.92
242 243 6.780457 AAAATTCCAATCTCCGATGTTCAT 57.220 33.333 0.00 0.00 0.00 2.57
243 244 7.880160 ATAAAATTCCAATCTCCGATGTTCA 57.120 32.000 0.00 0.00 0.00 3.18
244 245 9.023967 CAAATAAAATTCCAATCTCCGATGTTC 57.976 33.333 0.00 0.00 0.00 3.18
245 246 7.981225 CCAAATAAAATTCCAATCTCCGATGTT 59.019 33.333 0.00 0.00 0.00 2.71
246 247 7.124147 ACCAAATAAAATTCCAATCTCCGATGT 59.876 33.333 0.00 0.00 0.00 3.06
247 248 7.491682 ACCAAATAAAATTCCAATCTCCGATG 58.508 34.615 0.00 0.00 0.00 3.84
248 249 7.660030 ACCAAATAAAATTCCAATCTCCGAT 57.340 32.000 0.00 0.00 0.00 4.18
249 250 8.582657 TTACCAAATAAAATTCCAATCTCCGA 57.417 30.769 0.00 0.00 0.00 4.55
250 251 9.816354 ATTTACCAAATAAAATTCCAATCTCCG 57.184 29.630 0.00 0.00 36.35 4.63
323 324 7.930217 AGGTAAACATCATGTGTAATATGCAC 58.070 34.615 0.00 4.30 41.14 4.57
324 325 9.620259 TTAGGTAAACATCATGTGTAATATGCA 57.380 29.630 0.00 0.00 41.14 3.96
353 354 8.589338 GGTCTATCAACACCAGAAGTATCATAT 58.411 37.037 0.00 0.00 32.33 1.78
354 355 7.563556 TGGTCTATCAACACCAGAAGTATCATA 59.436 37.037 0.00 0.00 37.78 2.15
355 356 6.384015 TGGTCTATCAACACCAGAAGTATCAT 59.616 38.462 0.00 0.00 37.78 2.45
356 357 5.719563 TGGTCTATCAACACCAGAAGTATCA 59.280 40.000 0.00 0.00 37.78 2.15
357 358 6.222038 TGGTCTATCAACACCAGAAGTATC 57.778 41.667 0.00 0.00 37.78 2.24
358 359 6.620877 TTGGTCTATCAACACCAGAAGTAT 57.379 37.500 0.00 0.00 43.68 2.12
359 360 6.042781 ACTTTGGTCTATCAACACCAGAAGTA 59.957 38.462 12.80 0.00 43.68 2.24
360 361 4.974645 TTGGTCTATCAACACCAGAAGT 57.025 40.909 0.00 0.00 43.68 3.01
361 362 5.308825 ACTTTGGTCTATCAACACCAGAAG 58.691 41.667 0.00 0.00 43.68 2.85
362 363 5.304686 ACTTTGGTCTATCAACACCAGAA 57.695 39.130 0.00 0.00 43.68 3.02
363 364 4.974645 ACTTTGGTCTATCAACACCAGA 57.025 40.909 0.00 0.00 43.68 3.86
364 365 7.687941 ATTTACTTTGGTCTATCAACACCAG 57.312 36.000 0.00 0.00 43.68 4.00
365 366 8.472007 AAATTTACTTTGGTCTATCAACACCA 57.528 30.769 0.00 0.00 41.13 4.17
373 374 9.620660 CGCAAACTAAAATTTACTTTGGTCTAT 57.379 29.630 14.88 0.00 29.66 1.98
374 375 8.623030 ACGCAAACTAAAATTTACTTTGGTCTA 58.377 29.630 14.88 0.00 29.66 2.59
375 376 7.485810 ACGCAAACTAAAATTTACTTTGGTCT 58.514 30.769 14.88 0.00 29.66 3.85
376 377 7.356962 CGACGCAAACTAAAATTTACTTTGGTC 60.357 37.037 14.88 16.14 29.66 4.02
377 378 6.415573 CGACGCAAACTAAAATTTACTTTGGT 59.584 34.615 14.88 11.95 32.00 3.67
378 379 6.415573 ACGACGCAAACTAAAATTTACTTTGG 59.584 34.615 14.88 9.96 0.00 3.28
379 380 7.263819 CACGACGCAAACTAAAATTTACTTTG 58.736 34.615 11.13 11.13 0.00 2.77
380 381 6.075257 GCACGACGCAAACTAAAATTTACTTT 60.075 34.615 0.00 0.00 41.79 2.66
381 382 5.397240 GCACGACGCAAACTAAAATTTACTT 59.603 36.000 0.00 0.00 41.79 2.24
382 383 4.907582 GCACGACGCAAACTAAAATTTACT 59.092 37.500 0.00 0.00 41.79 2.24
383 384 4.087507 GGCACGACGCAAACTAAAATTTAC 59.912 41.667 0.00 0.00 45.17 2.01
384 385 4.220572 GGCACGACGCAAACTAAAATTTA 58.779 39.130 0.00 0.00 45.17 1.40
385 386 3.047093 GGCACGACGCAAACTAAAATTT 58.953 40.909 0.00 0.00 45.17 1.82
386 387 2.606065 GGGCACGACGCAAACTAAAATT 60.606 45.455 0.00 0.00 45.17 1.82
387 388 1.068816 GGGCACGACGCAAACTAAAAT 60.069 47.619 0.00 0.00 45.17 1.82
388 389 0.308376 GGGCACGACGCAAACTAAAA 59.692 50.000 0.00 0.00 45.17 1.52
389 390 0.814410 TGGGCACGACGCAAACTAAA 60.814 50.000 0.00 0.00 45.17 1.85
390 391 1.225376 CTGGGCACGACGCAAACTAA 61.225 55.000 0.00 0.00 45.17 2.24
391 392 1.666553 CTGGGCACGACGCAAACTA 60.667 57.895 0.00 0.00 45.17 2.24
392 393 2.972505 CTGGGCACGACGCAAACT 60.973 61.111 0.00 0.00 45.17 2.66
393 394 4.025401 CCTGGGCACGACGCAAAC 62.025 66.667 0.00 0.00 45.17 2.93
398 399 4.680237 TGAAGCCTGGGCACGACG 62.680 66.667 14.39 0.00 44.88 5.12
399 400 2.281484 TTGAAGCCTGGGCACGAC 60.281 61.111 14.39 2.97 44.88 4.34
400 401 2.281484 GTTGAAGCCTGGGCACGA 60.281 61.111 14.39 4.75 44.88 4.35
401 402 1.526575 ATTGTTGAAGCCTGGGCACG 61.527 55.000 14.39 0.00 44.88 5.34
402 403 0.681175 AATTGTTGAAGCCTGGGCAC 59.319 50.000 14.39 7.95 44.88 5.01
403 404 1.070445 CAAATTGTTGAAGCCTGGGCA 59.930 47.619 14.39 0.00 39.30 5.36
404 405 1.799544 CAAATTGTTGAAGCCTGGGC 58.200 50.000 3.00 3.00 36.83 5.36
405 406 1.345415 AGCAAATTGTTGAAGCCTGGG 59.655 47.619 0.00 0.00 36.83 4.45
406 407 2.825861 AGCAAATTGTTGAAGCCTGG 57.174 45.000 0.00 0.00 36.83 4.45
407 408 3.057033 AGCTAGCAAATTGTTGAAGCCTG 60.057 43.478 18.83 0.00 42.16 4.85
408 409 3.160269 AGCTAGCAAATTGTTGAAGCCT 58.840 40.909 18.83 0.00 42.16 4.58
409 410 3.505836 GAGCTAGCAAATTGTTGAAGCC 58.494 45.455 18.83 0.00 42.16 4.35
410 411 3.505836 GGAGCTAGCAAATTGTTGAAGC 58.494 45.455 18.83 0.00 41.81 3.86
411 412 3.751621 CGGAGCTAGCAAATTGTTGAAG 58.248 45.455 18.83 0.00 36.83 3.02
412 413 3.829886 CGGAGCTAGCAAATTGTTGAA 57.170 42.857 18.83 0.00 36.83 2.69
428 429 4.680237 TGCGAACCAGTGGCGGAG 62.680 66.667 9.78 0.00 0.00 4.63
429 430 4.243008 TTGCGAACCAGTGGCGGA 62.243 61.111 9.78 3.89 0.00 5.54
430 431 3.726517 CTTGCGAACCAGTGGCGG 61.727 66.667 9.78 0.00 0.00 6.13
431 432 2.034879 ATCTTGCGAACCAGTGGCG 61.035 57.895 9.78 6.98 0.00 5.69
432 433 1.503542 CATCTTGCGAACCAGTGGC 59.496 57.895 9.78 0.00 0.00 5.01
433 434 1.503542 GCATCTTGCGAACCAGTGG 59.496 57.895 7.91 7.91 31.71 4.00
434 435 1.236616 TGGCATCTTGCGAACCAGTG 61.237 55.000 0.00 0.00 46.21 3.66
435 436 1.073025 TGGCATCTTGCGAACCAGT 59.927 52.632 0.00 0.00 46.21 4.00
436 437 1.236616 TGTGGCATCTTGCGAACCAG 61.237 55.000 0.00 0.00 46.21 4.00
437 438 0.608856 ATGTGGCATCTTGCGAACCA 60.609 50.000 0.00 0.00 46.21 3.67
438 439 1.378531 TATGTGGCATCTTGCGAACC 58.621 50.000 0.00 0.00 46.21 3.62
439 440 3.698029 ATTATGTGGCATCTTGCGAAC 57.302 42.857 0.00 0.00 46.21 3.95
440 441 3.443329 ACAATTATGTGGCATCTTGCGAA 59.557 39.130 0.00 0.00 36.91 4.70
441 442 3.016031 ACAATTATGTGGCATCTTGCGA 58.984 40.909 0.00 0.00 36.91 5.10
442 443 3.425577 ACAATTATGTGGCATCTTGCG 57.574 42.857 0.00 0.00 36.91 4.85
443 444 4.327898 CACAACAATTATGTGGCATCTTGC 59.672 41.667 13.24 0.00 43.45 4.01
444 445 5.712004 TCACAACAATTATGTGGCATCTTG 58.288 37.500 18.35 0.00 46.37 3.02
445 446 5.981088 TCACAACAATTATGTGGCATCTT 57.019 34.783 18.35 0.00 46.37 2.40
446 447 5.653330 TGATCACAACAATTATGTGGCATCT 59.347 36.000 18.35 4.52 46.37 2.90
447 448 5.893687 TGATCACAACAATTATGTGGCATC 58.106 37.500 18.35 15.49 46.37 3.91
448 449 5.918426 TGATCACAACAATTATGTGGCAT 57.082 34.783 18.35 9.36 46.37 4.40
449 450 5.243507 ACTTGATCACAACAATTATGTGGCA 59.756 36.000 18.35 14.88 46.37 4.92
450 451 5.713025 ACTTGATCACAACAATTATGTGGC 58.287 37.500 18.35 13.19 46.37 5.01
451 452 6.587226 CCAACTTGATCACAACAATTATGTGG 59.413 38.462 18.35 8.53 46.37 4.17
453 454 7.523293 TCCAACTTGATCACAACAATTATGT 57.477 32.000 0.00 0.00 43.14 2.29
454 455 9.726232 CTATCCAACTTGATCACAACAATTATG 57.274 33.333 0.00 0.00 32.27 1.90
455 456 8.906867 CCTATCCAACTTGATCACAACAATTAT 58.093 33.333 0.00 0.00 32.27 1.28
456 457 8.106462 TCCTATCCAACTTGATCACAACAATTA 58.894 33.333 0.00 0.00 32.27 1.40
457 458 6.947733 TCCTATCCAACTTGATCACAACAATT 59.052 34.615 0.00 0.00 32.27 2.32
458 459 6.375455 GTCCTATCCAACTTGATCACAACAAT 59.625 38.462 0.00 0.00 32.27 2.71
459 460 5.705441 GTCCTATCCAACTTGATCACAACAA 59.295 40.000 0.00 0.00 32.27 2.83
460 461 5.013079 AGTCCTATCCAACTTGATCACAACA 59.987 40.000 0.00 0.00 32.27 3.33
461 462 5.352569 CAGTCCTATCCAACTTGATCACAAC 59.647 44.000 0.00 0.00 32.27 3.32
462 463 5.248248 TCAGTCCTATCCAACTTGATCACAA 59.752 40.000 0.00 0.00 34.65 3.33
463 464 4.777366 TCAGTCCTATCCAACTTGATCACA 59.223 41.667 0.00 0.00 0.00 3.58
464 465 5.344743 TCAGTCCTATCCAACTTGATCAC 57.655 43.478 0.00 0.00 0.00 3.06
465 466 6.351711 CAATCAGTCCTATCCAACTTGATCA 58.648 40.000 0.00 0.00 0.00 2.92
466 467 5.238214 GCAATCAGTCCTATCCAACTTGATC 59.762 44.000 0.00 0.00 0.00 2.92
467 468 5.128919 GCAATCAGTCCTATCCAACTTGAT 58.871 41.667 0.00 0.00 0.00 2.57
468 469 4.517285 GCAATCAGTCCTATCCAACTTGA 58.483 43.478 0.00 0.00 0.00 3.02
469 470 3.310774 CGCAATCAGTCCTATCCAACTTG 59.689 47.826 0.00 0.00 0.00 3.16
470 471 3.535561 CGCAATCAGTCCTATCCAACTT 58.464 45.455 0.00 0.00 0.00 2.66
471 472 2.158900 CCGCAATCAGTCCTATCCAACT 60.159 50.000 0.00 0.00 0.00 3.16
472 473 2.213499 CCGCAATCAGTCCTATCCAAC 58.787 52.381 0.00 0.00 0.00 3.77
473 474 1.140852 CCCGCAATCAGTCCTATCCAA 59.859 52.381 0.00 0.00 0.00 3.53
474 475 0.758734 CCCGCAATCAGTCCTATCCA 59.241 55.000 0.00 0.00 0.00 3.41
475 476 0.603975 GCCCGCAATCAGTCCTATCC 60.604 60.000 0.00 0.00 0.00 2.59
476 477 0.106708 TGCCCGCAATCAGTCCTATC 59.893 55.000 0.00 0.00 0.00 2.08
477 478 0.107456 CTGCCCGCAATCAGTCCTAT 59.893 55.000 0.00 0.00 0.00 2.57
478 479 1.522092 CTGCCCGCAATCAGTCCTA 59.478 57.895 0.00 0.00 0.00 2.94
479 480 2.270205 CTGCCCGCAATCAGTCCT 59.730 61.111 0.00 0.00 0.00 3.85
480 481 2.825836 CCTGCCCGCAATCAGTCC 60.826 66.667 0.00 0.00 0.00 3.85
481 482 3.512516 GCCTGCCCGCAATCAGTC 61.513 66.667 0.00 0.00 0.00 3.51
482 483 3.866379 TTGCCTGCCCGCAATCAGT 62.866 57.895 3.58 0.00 43.65 3.41
483 484 3.063704 TTGCCTGCCCGCAATCAG 61.064 61.111 3.58 0.00 43.65 2.90
487 488 1.001517 TTATCTTGCCTGCCCGCAA 60.002 52.632 7.27 7.27 46.23 4.85
488 489 1.748879 GTTATCTTGCCTGCCCGCA 60.749 57.895 0.00 0.00 36.85 5.69
489 490 2.823829 CGTTATCTTGCCTGCCCGC 61.824 63.158 0.00 0.00 0.00 6.13
490 491 1.153449 TCGTTATCTTGCCTGCCCG 60.153 57.895 0.00 0.00 0.00 6.13
491 492 1.429148 CGTCGTTATCTTGCCTGCCC 61.429 60.000 0.00 0.00 0.00 5.36
492 493 0.459585 TCGTCGTTATCTTGCCTGCC 60.460 55.000 0.00 0.00 0.00 4.85
493 494 0.924090 CTCGTCGTTATCTTGCCTGC 59.076 55.000 0.00 0.00 0.00 4.85
494 495 1.560923 CCTCGTCGTTATCTTGCCTG 58.439 55.000 0.00 0.00 0.00 4.85
495 496 0.179108 GCCTCGTCGTTATCTTGCCT 60.179 55.000 0.00 0.00 0.00 4.75
496 497 0.179108 AGCCTCGTCGTTATCTTGCC 60.179 55.000 0.00 0.00 0.00 4.52
497 498 1.201343 GAGCCTCGTCGTTATCTTGC 58.799 55.000 0.00 0.00 0.00 4.01
498 499 1.134367 TGGAGCCTCGTCGTTATCTTG 59.866 52.381 0.00 0.00 0.00 3.02
499 500 1.471119 TGGAGCCTCGTCGTTATCTT 58.529 50.000 0.00 0.00 0.00 2.40
500 501 1.609555 GATGGAGCCTCGTCGTTATCT 59.390 52.381 0.00 0.00 0.00 1.98
501 502 1.336056 GGATGGAGCCTCGTCGTTATC 60.336 57.143 0.00 0.00 0.00 1.75
502 503 0.674534 GGATGGAGCCTCGTCGTTAT 59.325 55.000 0.00 0.00 0.00 1.89
503 504 1.389609 GGGATGGAGCCTCGTCGTTA 61.390 60.000 0.00 0.00 0.00 3.18
504 505 2.722201 GGGATGGAGCCTCGTCGTT 61.722 63.158 0.00 0.00 0.00 3.85
505 506 3.148279 GGGATGGAGCCTCGTCGT 61.148 66.667 0.00 0.00 0.00 4.34
506 507 2.635229 CTTGGGATGGAGCCTCGTCG 62.635 65.000 0.00 0.00 0.00 5.12
507 508 1.144936 CTTGGGATGGAGCCTCGTC 59.855 63.158 0.00 0.00 0.00 4.20
508 509 0.692419 ATCTTGGGATGGAGCCTCGT 60.692 55.000 0.00 0.00 0.00 4.18
509 510 0.471617 AATCTTGGGATGGAGCCTCG 59.528 55.000 0.00 0.00 31.75 4.63
510 511 4.379302 AATAATCTTGGGATGGAGCCTC 57.621 45.455 0.00 0.00 31.75 4.70
511 512 5.165652 TCTAATAATCTTGGGATGGAGCCT 58.834 41.667 0.00 0.00 31.75 4.58
512 513 5.249393 TCTCTAATAATCTTGGGATGGAGCC 59.751 44.000 0.00 0.00 31.75 4.70
513 514 6.365970 TCTCTAATAATCTTGGGATGGAGC 57.634 41.667 0.00 0.00 31.75 4.70
514 515 6.013898 TGCTCTCTAATAATCTTGGGATGGAG 60.014 42.308 0.00 0.00 31.75 3.86
515 516 5.846164 TGCTCTCTAATAATCTTGGGATGGA 59.154 40.000 0.00 0.00 31.75 3.41
516 517 5.936956 GTGCTCTCTAATAATCTTGGGATGG 59.063 44.000 0.00 0.00 31.75 3.51
517 518 6.767456 AGTGCTCTCTAATAATCTTGGGATG 58.233 40.000 0.00 0.00 31.75 3.51
518 519 7.038658 GGTAGTGCTCTCTAATAATCTTGGGAT 60.039 40.741 0.00 0.00 0.00 3.85
519 520 6.267928 GGTAGTGCTCTCTAATAATCTTGGGA 59.732 42.308 0.00 0.00 0.00 4.37
520 521 6.042093 TGGTAGTGCTCTCTAATAATCTTGGG 59.958 42.308 0.00 0.00 0.00 4.12
521 522 7.055667 TGGTAGTGCTCTCTAATAATCTTGG 57.944 40.000 0.00 0.00 0.00 3.61
522 523 7.151308 CCTGGTAGTGCTCTCTAATAATCTTG 58.849 42.308 0.00 0.00 0.00 3.02
523 524 6.239458 GCCTGGTAGTGCTCTCTAATAATCTT 60.239 42.308 0.00 0.00 0.00 2.40
524 525 5.245075 GCCTGGTAGTGCTCTCTAATAATCT 59.755 44.000 0.00 0.00 0.00 2.40
525 526 5.245075 AGCCTGGTAGTGCTCTCTAATAATC 59.755 44.000 0.00 0.00 30.33 1.75
526 527 5.151454 AGCCTGGTAGTGCTCTCTAATAAT 58.849 41.667 0.00 0.00 30.33 1.28
527 528 4.547671 AGCCTGGTAGTGCTCTCTAATAA 58.452 43.478 0.00 0.00 30.33 1.40
528 529 4.186077 AGCCTGGTAGTGCTCTCTAATA 57.814 45.455 0.00 0.00 30.33 0.98
529 530 3.039252 AGCCTGGTAGTGCTCTCTAAT 57.961 47.619 0.00 0.00 30.33 1.73
530 531 2.497675 CAAGCCTGGTAGTGCTCTCTAA 59.502 50.000 0.00 0.00 36.66 2.10
531 532 2.103373 CAAGCCTGGTAGTGCTCTCTA 58.897 52.381 0.00 0.00 36.66 2.43
532 533 0.901124 CAAGCCTGGTAGTGCTCTCT 59.099 55.000 0.00 0.00 36.66 3.10
533 534 0.107945 CCAAGCCTGGTAGTGCTCTC 60.108 60.000 0.00 0.00 38.00 3.20
534 535 1.986413 CCAAGCCTGGTAGTGCTCT 59.014 57.895 0.00 0.00 38.00 4.09
535 536 1.746991 GCCAAGCCTGGTAGTGCTC 60.747 63.158 2.65 0.00 45.53 4.26
536 537 2.352805 GCCAAGCCTGGTAGTGCT 59.647 61.111 2.65 0.00 45.53 4.40
537 538 2.751837 GGCCAAGCCTGGTAGTGC 60.752 66.667 2.65 0.00 46.69 4.40
546 547 2.679996 AATCCAACCGGCCAAGCC 60.680 61.111 0.00 0.00 46.75 4.35
547 548 2.573340 CAATCCAACCGGCCAAGC 59.427 61.111 0.00 0.00 0.00 4.01
548 549 2.274645 TGCAATCCAACCGGCCAAG 61.275 57.895 0.00 0.00 0.00 3.61
549 550 2.203552 TGCAATCCAACCGGCCAA 60.204 55.556 0.00 0.00 0.00 4.52
550 551 2.988684 GTGCAATCCAACCGGCCA 60.989 61.111 0.00 0.00 0.00 5.36
551 552 2.988684 TGTGCAATCCAACCGGCC 60.989 61.111 0.00 0.00 0.00 6.13
552 553 1.971167 TCTGTGCAATCCAACCGGC 60.971 57.895 0.00 0.00 0.00 6.13
553 554 0.888736 TGTCTGTGCAATCCAACCGG 60.889 55.000 0.00 0.00 0.00 5.28
554 555 0.950836 TTGTCTGTGCAATCCAACCG 59.049 50.000 0.00 0.00 0.00 4.44
555 556 1.956477 AGTTGTCTGTGCAATCCAACC 59.044 47.619 13.16 0.00 36.85 3.77
556 557 2.349817 CGAGTTGTCTGTGCAATCCAAC 60.350 50.000 10.24 10.24 36.52 3.77
557 558 1.872952 CGAGTTGTCTGTGCAATCCAA 59.127 47.619 0.00 0.00 0.00 3.53
558 559 1.202639 ACGAGTTGTCTGTGCAATCCA 60.203 47.619 0.00 0.00 0.00 3.41
559 560 1.512926 ACGAGTTGTCTGTGCAATCC 58.487 50.000 0.00 0.00 0.00 3.01
560 561 2.090658 CGTACGAGTTGTCTGTGCAATC 59.909 50.000 10.44 0.00 0.00 2.67
561 562 2.058798 CGTACGAGTTGTCTGTGCAAT 58.941 47.619 10.44 0.00 0.00 3.56
562 563 1.483316 CGTACGAGTTGTCTGTGCAA 58.517 50.000 10.44 0.00 0.00 4.08
563 564 0.937699 GCGTACGAGTTGTCTGTGCA 60.938 55.000 21.65 0.00 0.00 4.57
564 565 1.773496 GCGTACGAGTTGTCTGTGC 59.227 57.895 21.65 0.00 0.00 4.57
565 566 1.930816 GCGCGTACGAGTTGTCTGTG 61.931 60.000 21.65 0.00 43.93 3.66
566 567 1.728426 GCGCGTACGAGTTGTCTGT 60.728 57.895 21.65 0.00 43.93 3.41
567 568 1.071019 ATGCGCGTACGAGTTGTCTG 61.071 55.000 21.65 0.00 43.93 3.51
568 569 0.448990 TATGCGCGTACGAGTTGTCT 59.551 50.000 21.65 3.05 43.93 3.41
569 570 0.564767 GTATGCGCGTACGAGTTGTC 59.435 55.000 22.97 3.24 43.93 3.18
570 571 0.109643 TGTATGCGCGTACGAGTTGT 60.110 50.000 29.20 8.67 43.93 3.32
571 572 1.197055 ATGTATGCGCGTACGAGTTG 58.803 50.000 29.20 6.16 43.93 3.16
572 573 1.586578 CAATGTATGCGCGTACGAGTT 59.413 47.619 29.20 21.59 43.93 3.01
573 574 1.197055 CAATGTATGCGCGTACGAGT 58.803 50.000 29.20 17.73 43.93 4.18
574 575 1.448308 CTCAATGTATGCGCGTACGAG 59.552 52.381 29.20 24.76 43.93 4.18
575 576 1.472990 CTCAATGTATGCGCGTACGA 58.527 50.000 29.20 20.75 43.93 3.43
576 577 0.111704 GCTCAATGTATGCGCGTACG 60.112 55.000 29.20 18.09 44.07 3.67
577 578 0.927537 TGCTCAATGTATGCGCGTAC 59.072 50.000 28.80 28.80 42.76 3.67
578 579 1.646189 TTGCTCAATGTATGCGCGTA 58.354 45.000 8.43 4.92 42.76 4.42
579 580 0.801872 TTTGCTCAATGTATGCGCGT 59.198 45.000 8.43 7.55 42.76 6.01
580 581 1.459756 CTTTGCTCAATGTATGCGCG 58.540 50.000 0.00 0.00 42.76 6.86
581 582 1.401552 TCCTTTGCTCAATGTATGCGC 59.598 47.619 0.00 0.00 40.23 6.09
582 583 3.624900 CATCCTTTGCTCAATGTATGCG 58.375 45.455 0.00 0.00 0.00 4.73
595 596 3.602483 CAATTTTCAGGGGCATCCTTTG 58.398 45.455 0.00 0.00 45.47 2.77
596 597 2.573009 CCAATTTTCAGGGGCATCCTTT 59.427 45.455 0.00 0.00 45.47 3.11
597 598 2.190538 CCAATTTTCAGGGGCATCCTT 58.809 47.619 0.00 0.00 45.47 3.36
599 600 0.178767 GCCAATTTTCAGGGGCATCC 59.821 55.000 0.00 0.00 45.70 3.51
600 601 3.766644 GCCAATTTTCAGGGGCATC 57.233 52.632 0.00 0.00 45.70 3.91
603 604 0.321564 GGTTGCCAATTTTCAGGGGC 60.322 55.000 0.00 0.00 46.58 5.80
604 605 1.002315 CAGGTTGCCAATTTTCAGGGG 59.998 52.381 0.00 0.00 0.00 4.79
605 606 1.693606 ACAGGTTGCCAATTTTCAGGG 59.306 47.619 0.00 0.00 0.00 4.45
606 607 2.102925 ACACAGGTTGCCAATTTTCAGG 59.897 45.455 0.00 0.00 0.00 3.86
607 608 3.457610 ACACAGGTTGCCAATTTTCAG 57.542 42.857 0.00 0.00 0.00 3.02
608 609 3.902881 AACACAGGTTGCCAATTTTCA 57.097 38.095 0.00 0.00 35.46 2.69
609 610 5.559427 AAAAACACAGGTTGCCAATTTTC 57.441 34.783 0.00 0.00 37.30 2.29
652 653 0.947960 GTCGAGATGCAGAGATCGGA 59.052 55.000 11.23 0.00 35.91 4.55
656 657 2.481854 GCATTGTCGAGATGCAGAGAT 58.518 47.619 22.25 0.00 46.96 2.75
657 658 1.931906 GCATTGTCGAGATGCAGAGA 58.068 50.000 22.25 0.00 46.96 3.10
732 733 5.819901 GCCTAGATTGTAGCTTCAAACTCAT 59.180 40.000 17.12 0.00 33.67 2.90
737 738 8.213679 AGATATTGCCTAGATTGTAGCTTCAAA 58.786 33.333 9.99 0.00 0.00 2.69
738 739 7.658982 CAGATATTGCCTAGATTGTAGCTTCAA 59.341 37.037 8.31 8.31 0.00 2.69
745 746 5.243954 AGCGACAGATATTGCCTAGATTGTA 59.756 40.000 0.00 0.00 0.00 2.41
748 749 4.881019 AGCGACAGATATTGCCTAGATT 57.119 40.909 0.00 0.00 0.00 2.40
759 760 3.308259 GGGGATAGGAGTAGCGACAGATA 60.308 52.174 0.00 0.00 0.00 1.98
885 886 3.612681 CGGACCGGTGTGTGACCT 61.613 66.667 14.63 0.00 43.55 3.85
903 904 4.363990 CAGCCTCGGTGAGTGCGT 62.364 66.667 0.00 0.00 33.40 5.24
927 928 2.774234 GAGATGGATGGGTGGAAGAAGA 59.226 50.000 0.00 0.00 0.00 2.87
939 940 1.134189 TGCTTGCTCTGGAGATGGATG 60.134 52.381 1.35 0.00 0.00 3.51
956 957 2.029666 GGTCTGTGCGTCAGTGCT 59.970 61.111 8.24 0.00 43.97 4.40
1011 1012 3.449227 CGCAGGGTGGTCGAGCTA 61.449 66.667 16.64 0.00 0.00 3.32
1092 1095 3.620761 CGTTGTATCTACCGCGTCATTA 58.379 45.455 4.92 0.00 0.00 1.90
1116 1119 1.827399 CGGAGGTTGCTAGGTGGTGT 61.827 60.000 0.00 0.00 0.00 4.16
1284 1290 0.042731 CCACTCCTGAACCCCTCCTA 59.957 60.000 0.00 0.00 0.00 2.94
1400 1407 1.064017 GTTTGGTGGCATAGGATGGGA 60.064 52.381 0.00 0.00 0.00 4.37
1596 1603 3.396276 TCTGGATCCTATCTTCGGACTCT 59.604 47.826 14.23 0.00 32.41 3.24
1772 1779 1.330655 GGGACAGCGGGATTCAGAGA 61.331 60.000 0.00 0.00 0.00 3.10
1807 1814 0.915364 GGGCTTCACTCCATCCTCTT 59.085 55.000 0.00 0.00 0.00 2.85
1910 1917 1.222661 GGAAAACCCTATCCGCCGT 59.777 57.895 0.00 0.00 0.00 5.68
1981 1988 2.527671 CGAGTCCGTTCATTGTGCA 58.472 52.632 0.00 0.00 0.00 4.57
1992 1999 2.829458 GGGAGGGAGACGAGTCCG 60.829 72.222 0.00 0.00 37.50 4.79
2004 2012 0.912486 ATTTTCGAGTCTGGGGGAGG 59.088 55.000 0.00 0.00 0.00 4.30
2011 2019 5.634020 ACCGAGAAGTTTATTTTCGAGTCTG 59.366 40.000 2.53 0.00 33.38 3.51
2012 2020 5.780984 ACCGAGAAGTTTATTTTCGAGTCT 58.219 37.500 2.53 0.00 33.38 3.24
2013 2021 5.219987 CGACCGAGAAGTTTATTTTCGAGTC 60.220 44.000 2.53 6.96 33.38 3.36
2014 2022 4.620184 CGACCGAGAAGTTTATTTTCGAGT 59.380 41.667 2.53 0.00 33.38 4.18
2015 2023 4.855388 TCGACCGAGAAGTTTATTTTCGAG 59.145 41.667 2.53 0.00 33.38 4.04
2016 2024 4.797471 TCGACCGAGAAGTTTATTTTCGA 58.203 39.130 2.53 0.00 33.38 3.71
2017 2025 5.515626 AGATCGACCGAGAAGTTTATTTTCG 59.484 40.000 0.00 0.00 0.00 3.46
2051 2059 4.170256 CACGGTTGCGCCTTTATTTTTAT 58.830 39.130 4.18 0.00 34.25 1.40
2053 2061 2.399448 CACGGTTGCGCCTTTATTTTT 58.601 42.857 4.18 0.00 34.25 1.94
2054 2062 1.336424 CCACGGTTGCGCCTTTATTTT 60.336 47.619 4.18 0.00 34.25 1.82
2055 2063 0.242555 CCACGGTTGCGCCTTTATTT 59.757 50.000 4.18 0.00 34.25 1.40
2056 2064 1.880186 CCACGGTTGCGCCTTTATT 59.120 52.632 4.18 0.00 34.25 1.40
2057 2065 2.696759 GCCACGGTTGCGCCTTTAT 61.697 57.895 4.18 0.00 34.25 1.40
2080 2088 1.216977 CATTGTACCTGGACGCGGA 59.783 57.895 12.47 0.00 0.00 5.54
2081 2089 0.390603 TTCATTGTACCTGGACGCGG 60.391 55.000 12.47 0.00 0.00 6.46
2117 2125 5.582665 GCTTATACACAAGAGGAAGGTGAAG 59.417 44.000 0.00 0.00 36.42 3.02
2133 2305 1.741055 CGGAAACCGGCTGCTTATACA 60.741 52.381 0.00 0.00 44.15 2.29
2136 2308 4.218722 CGGAAACCGGCTGCTTAT 57.781 55.556 0.00 0.00 44.15 1.73
2154 2326 2.625314 TGATAAGATGAGCTCCCTGACG 59.375 50.000 12.15 0.00 0.00 4.35
2160 2332 4.399004 AGTGTGTGATAAGATGAGCTCC 57.601 45.455 12.15 0.00 0.00 4.70
2297 2470 0.736325 CGGTAGGAGAAACGGCACTG 60.736 60.000 0.00 0.00 0.00 3.66
2298 2471 1.590147 CGGTAGGAGAAACGGCACT 59.410 57.895 0.00 0.00 0.00 4.40
2318 2491 2.881513 TGTGTTGTCTGTTGTTGTGTGT 59.118 40.909 0.00 0.00 0.00 3.72
2324 2497 2.091541 CCCACTGTGTTGTCTGTTGTT 58.908 47.619 7.08 0.00 0.00 2.83
2325 2498 1.750193 CCCACTGTGTTGTCTGTTGT 58.250 50.000 7.08 0.00 0.00 3.32
2326 2499 0.381801 GCCCACTGTGTTGTCTGTTG 59.618 55.000 7.08 0.00 0.00 3.33
2327 2500 1.095228 CGCCCACTGTGTTGTCTGTT 61.095 55.000 7.08 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.