Multiple sequence alignment - TraesCS5A01G052700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G052700 chr5A 100.000 4847 0 0 1 4847 47649111 47653957 0.000000e+00 8951.0
1 TraesCS5A01G052700 chr5A 84.507 852 108 11 2989 3817 47645487 47644637 0.000000e+00 821.0
2 TraesCS5A01G052700 chr5A 85.258 407 50 6 1333 1736 47647092 47646693 1.260000e-110 411.0
3 TraesCS5A01G052700 chr5A 92.574 202 15 0 2594 2795 47645766 47645565 1.710000e-74 291.0
4 TraesCS5A01G052700 chr5A 84.211 228 19 10 1120 1340 47647338 47647121 6.360000e-49 206.0
5 TraesCS5A01G052700 chr5A 91.176 102 9 0 1967 2068 47646524 47646423 6.540000e-29 139.0
6 TraesCS5A01G052700 chr5A 97.619 42 1 0 1072 1113 169297911 169297870 6.730000e-09 73.1
7 TraesCS5A01G052700 chr5B 93.766 2807 112 17 2082 4847 72009206 72006422 0.000000e+00 4156.0
8 TraesCS5A01G052700 chr5B 84.091 1672 220 30 2447 4086 71674869 71673212 0.000000e+00 1572.0
9 TraesCS5A01G052700 chr5B 88.341 1278 82 25 827 2068 72010538 72009292 0.000000e+00 1472.0
10 TraesCS5A01G052700 chr5B 83.141 866 118 12 2989 3827 72018281 72019145 0.000000e+00 765.0
11 TraesCS5A01G052700 chr5B 80.609 624 80 22 1120 1717 72016047 72016655 1.240000e-120 444.0
12 TraesCS5A01G052700 chr5B 93.035 201 14 0 2595 2795 72018009 72018209 1.320000e-75 294.0
13 TraesCS5A01G052700 chr5B 89.041 219 24 0 1503 1721 71683763 71683545 6.180000e-69 272.0
14 TraesCS5A01G052700 chr5B 88.288 222 24 1 3609 3828 71672381 71672160 1.030000e-66 265.0
15 TraesCS5A01G052700 chr5B 90.400 125 12 0 1944 2068 72017197 72017321 1.080000e-36 165.0
16 TraesCS5A01G052700 chr5B 82.569 109 11 3 4062 4163 680999574 680999681 6.680000e-14 89.8
17 TraesCS5A01G052700 chr5D 94.216 2455 90 9 2427 4847 59245668 59248104 0.000000e+00 3699.0
18 TraesCS5A01G052700 chr5D 87.750 849 52 26 874 1721 59244020 59244817 0.000000e+00 944.0
19 TraesCS5A01G052700 chr5D 83.505 873 122 11 2989 3839 59223754 59222882 0.000000e+00 795.0
20 TraesCS5A01G052700 chr5D 82.045 763 104 21 3353 4086 59295741 59294983 1.920000e-173 619.0
21 TraesCS5A01G052700 chr5D 84.806 566 75 8 1165 1721 59358775 59358212 4.240000e-155 558.0
22 TraesCS5A01G052700 chr5D 87.016 516 36 9 1165 1674 59363565 59363075 1.970000e-153 553.0
23 TraesCS5A01G052700 chr5D 94.277 332 18 1 2082 2413 59245354 59245684 1.560000e-139 507.0
24 TraesCS5A01G052700 chr5D 91.781 292 17 1 1777 2068 59244993 59245277 2.720000e-107 399.0
25 TraesCS5A01G052700 chr5D 85.309 388 49 4 1333 1717 59225569 59225187 1.260000e-105 394.0
26 TraesCS5A01G052700 chr5D 93.532 201 13 0 2595 2795 59224029 59223829 2.840000e-77 300.0
27 TraesCS5A01G052700 chr5D 85.333 225 19 9 1120 1340 59225805 59225591 2.270000e-53 220.0
28 TraesCS5A01G052700 chr5D 88.800 125 14 0 1944 2068 59224627 59224503 2.340000e-33 154.0
29 TraesCS5A01G052700 chr5D 83.088 136 7 5 819 945 59363891 59363763 5.130000e-20 110.0
30 TraesCS5A01G052700 chr5D 87.500 88 10 1 718 804 59242139 59242226 3.090000e-17 100.0
31 TraesCS5A01G052700 chr5D 87.500 88 10 1 718 804 59242538 59242625 3.090000e-17 100.0
32 TraesCS5A01G052700 chr5D 97.143 35 1 0 1723 1757 59244965 59244999 5.240000e-05 60.2
33 TraesCS5A01G052700 chr2D 89.745 1453 128 11 2458 3898 41478882 41477439 0.000000e+00 1838.0
34 TraesCS5A01G052700 chr2D 88.114 631 52 14 1113 1722 41781546 41780918 0.000000e+00 728.0
35 TraesCS5A01G052700 chr2D 83.755 474 44 15 3903 4343 41468772 41468299 7.500000e-113 418.0
36 TraesCS5A01G052700 chr2D 89.073 302 27 3 2098 2397 41479184 41478887 2.130000e-98 370.0
37 TraesCS5A01G052700 chr2D 87.162 148 18 1 4165 4312 377081445 377081299 3.000000e-37 167.0
38 TraesCS5A01G052700 chr2D 95.918 49 2 0 804 852 41800169 41800121 4.020000e-11 80.5
39 TraesCS5A01G052700 chr2D 82.828 99 6 3 888 986 41798546 41798459 1.450000e-10 78.7
40 TraesCS5A01G052700 chr2D 93.333 45 3 0 1069 1113 531349632 531349676 3.130000e-07 67.6
41 TraesCS5A01G052700 chr2D 95.000 40 1 1 1074 1113 479178351 479178313 1.460000e-05 62.1
42 TraesCS5A01G052700 chr4D 81.091 275 36 10 4054 4314 125232382 125232654 6.360000e-49 206.0
43 TraesCS5A01G052700 chr4D 85.227 88 6 5 4076 4162 152822007 152822088 3.110000e-12 84.2
44 TraesCS5A01G052700 chr1D 83.523 176 27 2 1398 1572 4823669 4823843 3.880000e-36 163.0
45 TraesCS5A01G052700 chr1D 84.615 104 16 0 1197 1300 90148703 90148806 2.390000e-18 104.0
46 TraesCS5A01G052700 chr3A 76.014 296 38 14 4048 4311 743778669 743778963 6.590000e-24 122.0
47 TraesCS5A01G052700 chr3A 85.714 98 8 1 4054 4145 443196052 443196149 1.110000e-16 99.0
48 TraesCS5A01G052700 chr3A 81.667 120 16 2 4053 4166 57809830 57809949 1.440000e-15 95.3
49 TraesCS5A01G052700 chr3A 95.238 42 2 0 1072 1113 564934807 564934766 3.130000e-07 67.6
50 TraesCS5A01G052700 chr1A 83.761 117 11 5 4055 4163 575199588 575199472 2.390000e-18 104.0
51 TraesCS5A01G052700 chr1A 95.556 45 1 1 1070 1113 330766944 330766900 2.420000e-08 71.3
52 TraesCS5A01G052700 chr1A 92.857 42 3 0 1072 1113 244507591 244507550 1.460000e-05 62.1
53 TraesCS5A01G052700 chr7B 97.674 43 1 0 1071 1113 559532021 559531979 1.870000e-09 75.0
54 TraesCS5A01G052700 chr7B 95.238 42 2 0 1072 1113 2433582 2433623 3.130000e-07 67.6
55 TraesCS5A01G052700 chr2B 93.333 45 3 0 1069 1113 631204390 631204434 3.130000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G052700 chr5A 47649111 47653957 4846 False 8951.000000 8951 100.000000 1 4847 1 chr5A.!!$F1 4846
1 TraesCS5A01G052700 chr5A 47644637 47647338 2701 True 373.600000 821 87.545200 1120 3817 5 chr5A.!!$R2 2697
2 TraesCS5A01G052700 chr5B 72006422 72010538 4116 True 2814.000000 4156 91.053500 827 4847 2 chr5B.!!$R3 4020
3 TraesCS5A01G052700 chr5B 71672160 71674869 2709 True 918.500000 1572 86.189500 2447 4086 2 chr5B.!!$R2 1639
4 TraesCS5A01G052700 chr5B 72016047 72019145 3098 False 417.000000 765 86.796250 1120 3827 4 chr5B.!!$F2 2707
5 TraesCS5A01G052700 chr5D 59242139 59248104 5965 False 829.885714 3699 91.452429 718 4847 7 chr5D.!!$F1 4129
6 TraesCS5A01G052700 chr5D 59294983 59295741 758 True 619.000000 619 82.045000 3353 4086 1 chr5D.!!$R1 733
7 TraesCS5A01G052700 chr5D 59358212 59358775 563 True 558.000000 558 84.806000 1165 1721 1 chr5D.!!$R2 556
8 TraesCS5A01G052700 chr5D 59222882 59225805 2923 True 372.600000 795 87.295800 1120 3839 5 chr5D.!!$R3 2719
9 TraesCS5A01G052700 chr5D 59363075 59363891 816 True 331.500000 553 85.052000 819 1674 2 chr5D.!!$R4 855
10 TraesCS5A01G052700 chr2D 41477439 41479184 1745 True 1104.000000 1838 89.409000 2098 3898 2 chr2D.!!$R5 1800
11 TraesCS5A01G052700 chr2D 41780918 41781546 628 True 728.000000 728 88.114000 1113 1722 1 chr2D.!!$R2 609

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
648 649 0.107456 CAGAATGCGGCAGATAGGGT 59.893 55.0 9.25 0.0 0.00 4.34 F
914 2689 0.188834 TTTGGACCCCCGGATTGTTT 59.811 50.0 0.73 0.0 34.29 2.83 F
915 2690 0.540830 TTGGACCCCCGGATTGTTTG 60.541 55.0 0.73 0.0 34.29 2.93 F
1051 2895 0.588252 GCACAACATCGAGCAACTGT 59.412 50.0 0.00 0.0 0.00 3.55 F
1340 3240 0.600255 GCTTATGCATACCGCCGACT 60.600 55.0 5.74 0.0 41.33 4.18 F
1956 4497 0.671163 CGGCATGCAGGCAAACAAAT 60.671 50.0 26.25 0.0 44.47 2.32 F
3270 6351 0.237235 AAAACGTACTACCGCGACGA 59.763 50.0 21.77 0.0 39.81 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1551 3479 0.030638 CTGGTTGCCGAACACTTTGG 59.969 55.000 0.00 0.0 37.26 3.28 R
1843 4384 3.181474 GCGCTAGTCAAAATCCCTAGACT 60.181 47.826 0.00 0.0 43.25 3.24 R
2068 4609 4.425180 TTAAAACAGTAGGGCACAGTGA 57.575 40.909 4.15 0.0 0.00 3.41 R
3032 6113 3.461061 CTGCGTGTAGGTCAATGATGAT 58.539 45.455 0.00 0.0 38.01 2.45 R
3270 6351 0.038526 CTTCCTGACGGCGTTGTACT 60.039 55.000 16.19 0.0 0.00 2.73 R
3617 6729 0.325296 AGCCACCCATTCTCCTACGA 60.325 55.000 0.00 0.0 0.00 3.43 R
4427 7573 1.982958 TGGAGGTTACTCAAAGTCCCC 59.017 52.381 0.00 0.0 45.81 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.877378 TGGTTGTATCGGACTTAACACT 57.123 40.909 0.00 0.00 0.00 3.55
23 24 5.981088 TGGTTGTATCGGACTTAACACTA 57.019 39.130 0.00 0.00 0.00 2.74
24 25 6.534475 TGGTTGTATCGGACTTAACACTAT 57.466 37.500 0.00 0.00 0.00 2.12
25 26 6.938507 TGGTTGTATCGGACTTAACACTATT 58.061 36.000 0.00 0.00 0.00 1.73
26 27 7.388437 TGGTTGTATCGGACTTAACACTATTT 58.612 34.615 0.00 0.00 0.00 1.40
27 28 8.530311 TGGTTGTATCGGACTTAACACTATTTA 58.470 33.333 0.00 0.00 0.00 1.40
28 29 9.369904 GGTTGTATCGGACTTAACACTATTTAA 57.630 33.333 0.00 0.00 0.00 1.52
61 62 9.859152 TCCCAAATAATTTTCCAAAATTCAAGT 57.141 25.926 12.27 0.00 43.12 3.16
91 92 9.658799 TTTTGAACTTATGGACAATTTTTGACA 57.341 25.926 0.00 0.00 0.00 3.58
92 93 9.658799 TTTGAACTTATGGACAATTTTTGACAA 57.341 25.926 0.00 0.00 0.00 3.18
93 94 9.658799 TTGAACTTATGGACAATTTTTGACAAA 57.341 25.926 0.00 0.00 0.00 2.83
94 95 9.092876 TGAACTTATGGACAATTTTTGACAAAC 57.907 29.630 0.00 0.00 0.00 2.93
95 96 8.432110 AACTTATGGACAATTTTTGACAAACC 57.568 30.769 0.00 0.00 0.00 3.27
96 97 6.989759 ACTTATGGACAATTTTTGACAAACCC 59.010 34.615 0.00 0.00 0.00 4.11
97 98 3.786635 TGGACAATTTTTGACAAACCCG 58.213 40.909 0.00 0.00 0.00 5.28
98 99 3.447586 TGGACAATTTTTGACAAACCCGA 59.552 39.130 0.00 0.00 0.00 5.14
99 100 4.100189 TGGACAATTTTTGACAAACCCGAT 59.900 37.500 0.00 0.00 0.00 4.18
100 101 5.053811 GGACAATTTTTGACAAACCCGATT 58.946 37.500 0.00 0.00 0.00 3.34
101 102 6.183360 TGGACAATTTTTGACAAACCCGATTA 60.183 34.615 0.00 0.00 0.00 1.75
102 103 6.871492 GGACAATTTTTGACAAACCCGATTAT 59.129 34.615 0.00 0.00 0.00 1.28
103 104 7.386573 GGACAATTTTTGACAAACCCGATTATT 59.613 33.333 0.00 0.00 0.00 1.40
104 105 8.669946 ACAATTTTTGACAAACCCGATTATTT 57.330 26.923 0.00 0.00 0.00 1.40
105 106 9.114952 ACAATTTTTGACAAACCCGATTATTTT 57.885 25.926 0.00 0.00 0.00 1.82
106 107 9.943163 CAATTTTTGACAAACCCGATTATTTTT 57.057 25.926 0.00 0.00 0.00 1.94
138 139 9.835389 ATCAAGAACAAAATTTGAAATTCCTGA 57.165 25.926 13.19 10.99 34.80 3.86
139 140 9.664332 TCAAGAACAAAATTTGAAATTCCTGAA 57.336 25.926 13.19 0.00 0.00 3.02
140 141 9.706846 CAAGAACAAAATTTGAAATTCCTGAAC 57.293 29.630 13.19 10.26 0.00 3.18
141 142 9.671279 AAGAACAAAATTTGAAATTCCTGAACT 57.329 25.926 13.19 11.64 0.00 3.01
142 143 9.671279 AGAACAAAATTTGAAATTCCTGAACTT 57.329 25.926 13.19 4.32 0.00 2.66
149 150 9.889128 AATTTGAAATTCCTGAACTTTTCTTGA 57.111 25.926 0.00 0.00 0.00 3.02
150 151 9.889128 ATTTGAAATTCCTGAACTTTTCTTGAA 57.111 25.926 7.23 0.00 0.00 2.69
151 152 9.717942 TTTGAAATTCCTGAACTTTTCTTGAAA 57.282 25.926 7.23 0.00 0.00 2.69
152 153 9.717942 TTGAAATTCCTGAACTTTTCTTGAAAA 57.282 25.926 8.07 8.07 0.00 2.29
153 154 9.150348 TGAAATTCCTGAACTTTTCTTGAAAAC 57.850 29.630 4.61 0.00 0.00 2.43
154 155 9.150348 GAAATTCCTGAACTTTTCTTGAAAACA 57.850 29.630 4.61 2.11 0.00 2.83
155 156 9.671279 AAATTCCTGAACTTTTCTTGAAAACAT 57.329 25.926 4.61 0.00 0.00 2.71
156 157 9.671279 AATTCCTGAACTTTTCTTGAAAACATT 57.329 25.926 4.61 3.25 0.00 2.71
157 158 9.671279 ATTCCTGAACTTTTCTTGAAAACATTT 57.329 25.926 4.61 0.08 0.00 2.32
158 159 9.500785 TTCCTGAACTTTTCTTGAAAACATTTT 57.499 25.926 4.61 0.00 0.00 1.82
159 160 9.500785 TCCTGAACTTTTCTTGAAAACATTTTT 57.499 25.926 4.61 0.00 0.00 1.94
289 290 8.527567 AAAACACTTTTTGAAATCTTCGAACA 57.472 26.923 0.00 0.00 33.45 3.18
290 291 8.527567 AAACACTTTTTGAAATCTTCGAACAA 57.472 26.923 0.00 0.00 32.91 2.83
291 292 8.702163 AACACTTTTTGAAATCTTCGAACAAT 57.298 26.923 0.00 0.00 32.91 2.71
292 293 8.702163 ACACTTTTTGAAATCTTCGAACAATT 57.298 26.923 0.00 0.00 32.91 2.32
293 294 9.150348 ACACTTTTTGAAATCTTCGAACAATTT 57.850 25.926 11.62 11.62 32.91 1.82
298 299 8.809159 TTTGAAATCTTCGAACAATTTATGCA 57.191 26.923 11.72 0.00 0.00 3.96
299 300 8.809159 TTGAAATCTTCGAACAATTTATGCAA 57.191 26.923 11.72 9.85 0.00 4.08
300 301 8.809159 TGAAATCTTCGAACAATTTATGCAAA 57.191 26.923 11.72 0.00 0.00 3.68
301 302 9.254133 TGAAATCTTCGAACAATTTATGCAAAA 57.746 25.926 11.72 0.00 0.00 2.44
304 305 8.816640 ATCTTCGAACAATTTATGCAAAAAGT 57.183 26.923 0.00 0.00 0.00 2.66
305 306 8.060020 TCTTCGAACAATTTATGCAAAAAGTG 57.940 30.769 0.00 0.00 39.61 3.16
306 307 7.918033 TCTTCGAACAATTTATGCAAAAAGTGA 59.082 29.630 0.00 0.00 36.74 3.41
307 308 8.586570 TTCGAACAATTTATGCAAAAAGTGAT 57.413 26.923 0.00 0.00 36.74 3.06
308 309 8.586570 TCGAACAATTTATGCAAAAAGTGATT 57.413 26.923 0.00 0.00 36.74 2.57
309 310 9.039870 TCGAACAATTTATGCAAAAAGTGATTT 57.960 25.926 0.00 0.00 36.74 2.17
310 311 9.649024 CGAACAATTTATGCAAAAAGTGATTTT 57.351 25.926 0.00 0.00 41.93 1.82
510 511 5.524971 AAAGAGAAAACCTAAAAACCCCG 57.475 39.130 0.00 0.00 0.00 5.73
511 512 3.493334 AGAGAAAACCTAAAAACCCCGG 58.507 45.455 0.00 0.00 0.00 5.73
512 513 3.117398 AGAGAAAACCTAAAAACCCCGGT 60.117 43.478 0.00 0.00 0.00 5.28
513 514 3.638160 GAGAAAACCTAAAAACCCCGGTT 59.362 43.478 0.00 0.00 40.45 4.44
515 516 5.207354 AGAAAACCTAAAAACCCCGGTTTA 58.793 37.500 12.15 0.00 46.22 2.01
516 517 5.302568 AGAAAACCTAAAAACCCCGGTTTAG 59.697 40.000 12.15 12.98 46.22 1.85
521 522 5.787953 CTAAAAACCCCGGTTTAGGAAAA 57.212 39.130 12.15 0.00 46.22 2.29
522 523 4.675976 AAAAACCCCGGTTTAGGAAAAG 57.324 40.909 12.15 0.00 46.22 2.27
523 524 2.297698 AACCCCGGTTTAGGAAAAGG 57.702 50.000 0.00 0.00 34.22 3.11
524 525 1.151760 ACCCCGGTTTAGGAAAAGGT 58.848 50.000 0.00 0.00 0.00 3.50
525 526 1.500303 ACCCCGGTTTAGGAAAAGGTT 59.500 47.619 0.00 0.00 0.00 3.50
526 527 2.165167 CCCCGGTTTAGGAAAAGGTTC 58.835 52.381 0.00 0.00 0.00 3.62
527 528 2.224942 CCCCGGTTTAGGAAAAGGTTCT 60.225 50.000 0.00 0.00 33.92 3.01
528 529 3.079578 CCCGGTTTAGGAAAAGGTTCTC 58.920 50.000 0.00 0.00 33.92 2.87
529 530 3.497227 CCCGGTTTAGGAAAAGGTTCTCA 60.497 47.826 0.00 0.00 33.92 3.27
530 531 4.139038 CCGGTTTAGGAAAAGGTTCTCAA 58.861 43.478 0.00 0.00 33.92 3.02
531 532 4.581409 CCGGTTTAGGAAAAGGTTCTCAAA 59.419 41.667 0.00 0.00 33.92 2.69
532 533 5.068067 CCGGTTTAGGAAAAGGTTCTCAAAA 59.932 40.000 0.00 0.00 33.92 2.44
533 534 5.975344 CGGTTTAGGAAAAGGTTCTCAAAAC 59.025 40.000 0.00 0.00 33.58 2.43
534 535 6.278363 GGTTTAGGAAAAGGTTCTCAAAACC 58.722 40.000 0.00 0.00 39.56 3.27
535 536 5.761165 TTAGGAAAAGGTTCTCAAAACCG 57.239 39.130 1.52 0.00 44.82 4.44
536 537 2.956333 AGGAAAAGGTTCTCAAAACCGG 59.044 45.455 0.00 0.00 44.82 5.28
537 538 2.545113 GGAAAAGGTTCTCAAAACCGGC 60.545 50.000 0.00 0.00 44.82 6.13
538 539 2.067365 AAAGGTTCTCAAAACCGGCT 57.933 45.000 0.00 0.00 44.82 5.52
539 540 2.943036 AAGGTTCTCAAAACCGGCTA 57.057 45.000 0.00 0.00 44.82 3.93
540 541 2.474410 AGGTTCTCAAAACCGGCTAG 57.526 50.000 0.00 0.00 44.82 3.42
541 542 1.003233 AGGTTCTCAAAACCGGCTAGG 59.997 52.381 0.00 0.00 44.82 3.02
542 543 1.002773 GGTTCTCAAAACCGGCTAGGA 59.997 52.381 0.00 0.00 45.00 2.94
543 544 2.551504 GGTTCTCAAAACCGGCTAGGAA 60.552 50.000 0.00 0.00 45.00 3.36
544 545 2.467566 TCTCAAAACCGGCTAGGAAC 57.532 50.000 0.00 0.00 45.00 3.62
545 546 1.002773 TCTCAAAACCGGCTAGGAACC 59.997 52.381 0.00 0.00 45.00 3.62
546 547 0.766131 TCAAAACCGGCTAGGAACCA 59.234 50.000 0.00 0.00 45.00 3.67
547 548 1.353022 TCAAAACCGGCTAGGAACCAT 59.647 47.619 0.00 0.00 45.00 3.55
548 549 1.743394 CAAAACCGGCTAGGAACCATC 59.257 52.381 0.00 0.00 45.00 3.51
549 550 0.107848 AAACCGGCTAGGAACCATCG 60.108 55.000 0.00 0.00 45.00 3.84
550 551 0.974010 AACCGGCTAGGAACCATCGA 60.974 55.000 0.00 0.00 45.00 3.59
551 552 1.364171 CCGGCTAGGAACCATCGAG 59.636 63.158 0.00 0.00 45.00 4.04
552 553 1.107538 CCGGCTAGGAACCATCGAGA 61.108 60.000 0.00 0.00 45.00 4.04
553 554 0.744874 CGGCTAGGAACCATCGAGAA 59.255 55.000 0.00 0.00 0.00 2.87
554 555 1.269309 CGGCTAGGAACCATCGAGAAG 60.269 57.143 0.00 0.00 0.00 2.85
555 556 1.069358 GGCTAGGAACCATCGAGAAGG 59.931 57.143 0.00 0.00 0.00 3.46
556 557 1.757699 GCTAGGAACCATCGAGAAGGT 59.242 52.381 1.48 1.48 40.61 3.50
561 562 1.358152 AACCATCGAGAAGGTTCCCA 58.642 50.000 12.42 0.00 44.51 4.37
562 563 1.358152 ACCATCGAGAAGGTTCCCAA 58.642 50.000 1.48 0.00 33.39 4.12
563 564 1.702957 ACCATCGAGAAGGTTCCCAAA 59.297 47.619 1.48 0.00 33.39 3.28
564 565 2.107552 ACCATCGAGAAGGTTCCCAAAA 59.892 45.455 1.48 0.00 33.39 2.44
565 566 2.488153 CCATCGAGAAGGTTCCCAAAAC 59.512 50.000 0.00 0.00 0.00 2.43
566 567 3.146066 CATCGAGAAGGTTCCCAAAACA 58.854 45.455 0.00 0.00 0.00 2.83
567 568 2.846193 TCGAGAAGGTTCCCAAAACAG 58.154 47.619 0.00 0.00 0.00 3.16
568 569 2.436542 TCGAGAAGGTTCCCAAAACAGA 59.563 45.455 0.00 0.00 0.00 3.41
569 570 3.118186 TCGAGAAGGTTCCCAAAACAGAA 60.118 43.478 0.00 0.00 0.00 3.02
570 571 3.630312 CGAGAAGGTTCCCAAAACAGAAA 59.370 43.478 0.00 0.00 0.00 2.52
571 572 4.097286 CGAGAAGGTTCCCAAAACAGAAAA 59.903 41.667 0.00 0.00 0.00 2.29
572 573 5.393678 CGAGAAGGTTCCCAAAACAGAAAAA 60.394 40.000 0.00 0.00 0.00 1.94
573 574 6.560003 AGAAGGTTCCCAAAACAGAAAAAT 57.440 33.333 0.00 0.00 0.00 1.82
574 575 6.348498 AGAAGGTTCCCAAAACAGAAAAATG 58.652 36.000 0.00 0.00 0.00 2.32
575 576 4.450976 AGGTTCCCAAAACAGAAAAATGC 58.549 39.130 0.00 0.00 0.00 3.56
576 577 4.164030 AGGTTCCCAAAACAGAAAAATGCT 59.836 37.500 0.00 0.00 0.00 3.79
577 578 5.365314 AGGTTCCCAAAACAGAAAAATGCTA 59.635 36.000 0.00 0.00 0.00 3.49
578 579 6.052360 GGTTCCCAAAACAGAAAAATGCTAA 58.948 36.000 0.00 0.00 0.00 3.09
579 580 6.710295 GGTTCCCAAAACAGAAAAATGCTAAT 59.290 34.615 0.00 0.00 0.00 1.73
580 581 7.228507 GGTTCCCAAAACAGAAAAATGCTAATT 59.771 33.333 0.00 0.00 0.00 1.40
581 582 7.727331 TCCCAAAACAGAAAAATGCTAATTG 57.273 32.000 0.00 0.00 0.00 2.32
582 583 6.709846 TCCCAAAACAGAAAAATGCTAATTGG 59.290 34.615 0.00 0.00 0.00 3.16
583 584 6.072563 CCCAAAACAGAAAAATGCTAATTGGG 60.073 38.462 0.00 0.00 0.00 4.12
584 585 6.372981 CAAAACAGAAAAATGCTAATTGGGC 58.627 36.000 0.00 0.00 0.00 5.36
585 586 4.206477 ACAGAAAAATGCTAATTGGGCC 57.794 40.909 0.00 0.00 0.00 5.80
586 587 3.189285 CAGAAAAATGCTAATTGGGCCG 58.811 45.455 0.00 0.00 0.00 6.13
587 588 2.168313 AGAAAAATGCTAATTGGGCCGG 59.832 45.455 0.00 0.00 0.00 6.13
588 589 0.177836 AAAATGCTAATTGGGCCGGC 59.822 50.000 21.18 21.18 0.00 6.13
589 590 0.687427 AAATGCTAATTGGGCCGGCT 60.687 50.000 28.56 8.66 0.00 5.52
590 591 1.109323 AATGCTAATTGGGCCGGCTC 61.109 55.000 28.56 25.91 0.00 4.70
591 592 2.124320 GCTAATTGGGCCGGCTCA 60.124 61.111 29.29 29.29 0.00 4.26
592 593 1.529244 GCTAATTGGGCCGGCTCAT 60.529 57.895 33.55 20.04 0.00 2.90
593 594 1.799258 GCTAATTGGGCCGGCTCATG 61.799 60.000 33.55 20.98 0.00 3.07
594 595 0.466189 CTAATTGGGCCGGCTCATGT 60.466 55.000 33.55 23.37 0.00 3.21
595 596 0.840617 TAATTGGGCCGGCTCATGTA 59.159 50.000 33.55 22.20 0.00 2.29
596 597 0.185901 AATTGGGCCGGCTCATGTAT 59.814 50.000 33.55 19.11 0.00 2.29
597 598 0.250901 ATTGGGCCGGCTCATGTATC 60.251 55.000 33.55 8.40 0.00 2.24
598 599 1.631071 TTGGGCCGGCTCATGTATCA 61.631 55.000 33.55 11.83 0.00 2.15
599 600 1.376466 GGGCCGGCTCATGTATCAT 59.624 57.895 28.56 0.00 0.00 2.45
600 601 0.613260 GGGCCGGCTCATGTATCATA 59.387 55.000 28.56 0.00 0.00 2.15
601 602 1.003118 GGGCCGGCTCATGTATCATAA 59.997 52.381 28.56 0.00 0.00 1.90
602 603 2.552155 GGGCCGGCTCATGTATCATAAA 60.552 50.000 28.56 0.00 0.00 1.40
603 604 3.146066 GGCCGGCTCATGTATCATAAAA 58.854 45.455 28.56 0.00 0.00 1.52
604 605 3.058224 GGCCGGCTCATGTATCATAAAAC 60.058 47.826 28.56 0.00 0.00 2.43
605 606 3.363970 GCCGGCTCATGTATCATAAAACG 60.364 47.826 22.15 0.00 0.00 3.60
606 607 3.807622 CCGGCTCATGTATCATAAAACGT 59.192 43.478 0.00 0.00 0.00 3.99
607 608 4.318760 CCGGCTCATGTATCATAAAACGTG 60.319 45.833 0.00 0.00 34.57 4.49
608 609 4.270084 CGGCTCATGTATCATAAAACGTGT 59.730 41.667 0.00 0.00 34.81 4.49
609 610 5.501715 GGCTCATGTATCATAAAACGTGTG 58.498 41.667 0.00 0.00 34.81 3.82
610 611 5.064707 GGCTCATGTATCATAAAACGTGTGT 59.935 40.000 0.00 0.00 34.81 3.72
611 612 5.959527 GCTCATGTATCATAAAACGTGTGTG 59.040 40.000 0.00 0.00 34.81 3.82
612 613 6.183360 GCTCATGTATCATAAAACGTGTGTGA 60.183 38.462 0.00 0.00 34.81 3.58
613 614 7.465916 GCTCATGTATCATAAAACGTGTGTGAT 60.466 37.037 13.76 13.76 34.81 3.06
614 615 8.934507 TCATGTATCATAAAACGTGTGTGATA 57.065 30.769 12.23 12.23 34.81 2.15
615 616 8.813282 TCATGTATCATAAAACGTGTGTGATAC 58.187 33.333 26.11 26.11 45.86 2.24
617 618 5.712217 ATCATAAAACGTGTGTGATACGG 57.288 39.130 9.21 0.00 45.24 4.02
618 619 4.807443 TCATAAAACGTGTGTGATACGGA 58.193 39.130 0.00 0.00 45.24 4.69
619 620 4.860352 TCATAAAACGTGTGTGATACGGAG 59.140 41.667 0.00 0.00 45.24 4.63
620 621 3.374220 AAAACGTGTGTGATACGGAGA 57.626 42.857 0.00 0.00 45.24 3.71
621 622 3.374220 AAACGTGTGTGATACGGAGAA 57.626 42.857 0.00 0.00 45.24 2.87
622 623 2.342910 ACGTGTGTGATACGGAGAAC 57.657 50.000 0.00 0.00 45.24 3.01
623 624 1.884579 ACGTGTGTGATACGGAGAACT 59.115 47.619 0.00 0.00 45.24 3.01
624 625 2.295349 ACGTGTGTGATACGGAGAACTT 59.705 45.455 0.00 0.00 45.24 2.66
625 626 2.661675 CGTGTGTGATACGGAGAACTTG 59.338 50.000 0.00 0.00 37.86 3.16
626 627 2.412089 GTGTGTGATACGGAGAACTTGC 59.588 50.000 0.00 0.00 0.00 4.01
627 628 2.000447 GTGTGATACGGAGAACTTGCC 59.000 52.381 0.00 0.00 0.00 4.52
632 633 2.048222 CGGAGAACTTGCCGCAGA 60.048 61.111 0.00 0.00 41.17 4.26
633 634 1.667830 CGGAGAACTTGCCGCAGAA 60.668 57.895 0.00 0.00 41.17 3.02
634 635 1.021390 CGGAGAACTTGCCGCAGAAT 61.021 55.000 0.00 0.00 41.17 2.40
635 636 0.449388 GGAGAACTTGCCGCAGAATG 59.551 55.000 0.00 0.00 40.87 2.67
647 648 2.924185 CAGAATGCGGCAGATAGGG 58.076 57.895 9.25 0.00 0.00 3.53
648 649 0.107456 CAGAATGCGGCAGATAGGGT 59.893 55.000 9.25 0.00 0.00 4.34
649 650 0.839946 AGAATGCGGCAGATAGGGTT 59.160 50.000 9.25 0.00 0.00 4.11
650 651 1.212935 AGAATGCGGCAGATAGGGTTT 59.787 47.619 9.25 0.00 0.00 3.27
651 652 2.024414 GAATGCGGCAGATAGGGTTTT 58.976 47.619 9.25 0.00 0.00 2.43
652 653 2.143876 ATGCGGCAGATAGGGTTTTT 57.856 45.000 9.25 0.00 0.00 1.94
671 672 4.990543 TTTTCTAGATCAACGTGTGCAG 57.009 40.909 0.00 0.00 0.00 4.41
672 673 2.654749 TCTAGATCAACGTGTGCAGG 57.345 50.000 0.00 0.00 0.00 4.85
673 674 2.167662 TCTAGATCAACGTGTGCAGGA 58.832 47.619 0.00 0.00 0.00 3.86
674 675 2.760650 TCTAGATCAACGTGTGCAGGAT 59.239 45.455 0.00 0.00 0.00 3.24
675 676 2.479566 AGATCAACGTGTGCAGGATT 57.520 45.000 0.00 0.00 0.00 3.01
676 677 2.783135 AGATCAACGTGTGCAGGATTT 58.217 42.857 0.00 0.00 0.00 2.17
677 678 3.149196 AGATCAACGTGTGCAGGATTTT 58.851 40.909 0.00 0.00 0.00 1.82
678 679 3.569701 AGATCAACGTGTGCAGGATTTTT 59.430 39.130 0.00 0.00 0.00 1.94
679 680 3.347958 TCAACGTGTGCAGGATTTTTC 57.652 42.857 0.00 0.00 0.00 2.29
680 681 2.043411 CAACGTGTGCAGGATTTTTCG 58.957 47.619 0.00 0.00 0.00 3.46
681 682 1.305201 ACGTGTGCAGGATTTTTCGT 58.695 45.000 0.00 0.00 0.00 3.85
682 683 1.673920 ACGTGTGCAGGATTTTTCGTT 59.326 42.857 0.00 0.00 0.00 3.85
683 684 2.098443 ACGTGTGCAGGATTTTTCGTTT 59.902 40.909 0.00 0.00 0.00 3.60
684 685 3.112580 CGTGTGCAGGATTTTTCGTTTT 58.887 40.909 0.00 0.00 0.00 2.43
685 686 3.549873 CGTGTGCAGGATTTTTCGTTTTT 59.450 39.130 0.00 0.00 0.00 1.94
686 687 4.735822 CGTGTGCAGGATTTTTCGTTTTTA 59.264 37.500 0.00 0.00 0.00 1.52
687 688 5.108405 CGTGTGCAGGATTTTTCGTTTTTAG 60.108 40.000 0.00 0.00 0.00 1.85
688 689 4.742659 TGTGCAGGATTTTTCGTTTTTAGC 59.257 37.500 0.00 0.00 0.00 3.09
689 690 3.978217 TGCAGGATTTTTCGTTTTTAGCG 59.022 39.130 0.00 0.00 0.00 4.26
690 691 3.181544 GCAGGATTTTTCGTTTTTAGCGC 60.182 43.478 0.00 0.00 0.00 5.92
691 692 3.057609 CAGGATTTTTCGTTTTTAGCGCG 59.942 43.478 0.00 0.00 0.00 6.86
692 693 2.340283 GGATTTTTCGTTTTTAGCGCGG 59.660 45.455 8.83 0.00 0.00 6.46
693 694 2.752144 TTTTTCGTTTTTAGCGCGGA 57.248 40.000 8.83 0.00 0.00 5.54
694 695 2.303707 TTTTCGTTTTTAGCGCGGAG 57.696 45.000 8.83 0.00 0.00 4.63
712 713 5.149054 CGGAGCTGCTTTTGAATTAGTAG 57.851 43.478 2.53 0.00 0.00 2.57
713 714 4.494855 CGGAGCTGCTTTTGAATTAGTAGC 60.495 45.833 2.53 7.69 46.41 3.58
716 717 4.091424 GCTGCTTTTGAATTAGTAGCACG 58.909 43.478 10.17 4.73 45.68 5.34
717 718 4.142902 GCTGCTTTTGAATTAGTAGCACGA 60.143 41.667 10.17 0.00 45.68 4.35
718 719 5.447818 GCTGCTTTTGAATTAGTAGCACGAT 60.448 40.000 10.17 0.00 45.68 3.73
719 720 6.106877 TGCTTTTGAATTAGTAGCACGATC 57.893 37.500 0.00 0.00 36.96 3.69
720 721 5.641636 TGCTTTTGAATTAGTAGCACGATCA 59.358 36.000 0.00 0.00 36.96 2.92
721 722 5.960105 GCTTTTGAATTAGTAGCACGATCAC 59.040 40.000 0.00 0.00 0.00 3.06
722 723 6.402118 GCTTTTGAATTAGTAGCACGATCACA 60.402 38.462 0.00 0.00 0.00 3.58
723 724 6.647212 TTTGAATTAGTAGCACGATCACAG 57.353 37.500 0.00 0.00 0.00 3.66
724 725 5.576447 TGAATTAGTAGCACGATCACAGA 57.424 39.130 0.00 0.00 0.00 3.41
725 726 5.582550 TGAATTAGTAGCACGATCACAGAG 58.417 41.667 0.00 0.00 0.00 3.35
726 727 3.422417 TTAGTAGCACGATCACAGAGC 57.578 47.619 0.00 0.00 0.00 4.09
727 728 0.457851 AGTAGCACGATCACAGAGCC 59.542 55.000 0.00 0.00 0.00 4.70
728 729 0.867753 GTAGCACGATCACAGAGCCG 60.868 60.000 0.00 0.00 0.00 5.52
729 730 1.313091 TAGCACGATCACAGAGCCGT 61.313 55.000 0.00 0.00 35.46 5.68
730 731 1.138883 GCACGATCACAGAGCCGTA 59.861 57.895 0.00 0.00 33.62 4.02
731 732 0.249073 GCACGATCACAGAGCCGTAT 60.249 55.000 0.00 0.00 33.62 3.06
732 733 1.481240 CACGATCACAGAGCCGTATG 58.519 55.000 0.00 0.00 33.62 2.39
733 734 0.249073 ACGATCACAGAGCCGTATGC 60.249 55.000 0.00 0.00 41.71 3.14
748 749 0.771127 TATGCTGGATTAGTGGCCCC 59.229 55.000 0.00 0.00 0.00 5.80
761 762 0.536460 TGGCCCCTGAGTTTTCGAAC 60.536 55.000 0.00 0.00 0.00 3.95
800 802 1.891616 AACGGTTTTGGCCACGTTT 59.108 47.368 22.06 9.77 45.97 3.60
833 2579 6.631238 CGTTAGTGTAAGTGGAACATGTTTTG 59.369 38.462 13.36 0.00 44.52 2.44
854 2600 9.146984 GTTTTGACTTAAAGCAAACCTAAAACT 57.853 29.630 0.00 0.00 34.09 2.66
857 2603 7.645402 TGACTTAAAGCAAACCTAAAACTAGC 58.355 34.615 0.00 0.00 0.00 3.42
858 2604 6.978338 ACTTAAAGCAAACCTAAAACTAGCC 58.022 36.000 0.00 0.00 0.00 3.93
859 2605 6.548251 ACTTAAAGCAAACCTAAAACTAGCCA 59.452 34.615 0.00 0.00 0.00 4.75
860 2606 5.862678 AAAGCAAACCTAAAACTAGCCAA 57.137 34.783 0.00 0.00 0.00 4.52
861 2607 5.453567 AAGCAAACCTAAAACTAGCCAAG 57.546 39.130 0.00 0.00 0.00 3.61
862 2608 3.826729 AGCAAACCTAAAACTAGCCAAGG 59.173 43.478 0.00 0.00 0.00 3.61
863 2609 3.056821 GCAAACCTAAAACTAGCCAAGGG 60.057 47.826 6.12 0.00 0.00 3.95
873 2619 3.680786 GCCAAGGGCGAAACCACC 61.681 66.667 0.00 0.00 39.62 4.61
914 2689 0.188834 TTTGGACCCCCGGATTGTTT 59.811 50.000 0.73 0.00 34.29 2.83
915 2690 0.540830 TTGGACCCCCGGATTGTTTG 60.541 55.000 0.73 0.00 34.29 2.93
1040 2869 1.975407 GCAGGGCAGAGCACAACAT 60.975 57.895 0.00 0.00 32.33 2.71
1049 2893 1.151668 GAGCACAACATCGAGCAACT 58.848 50.000 0.00 0.00 0.00 3.16
1050 2894 0.870393 AGCACAACATCGAGCAACTG 59.130 50.000 0.00 0.00 0.00 3.16
1051 2895 0.588252 GCACAACATCGAGCAACTGT 59.412 50.000 0.00 0.00 0.00 3.55
1053 2897 1.599071 CACAACATCGAGCAACTGTGT 59.401 47.619 0.00 0.00 31.65 3.72
1054 2898 2.032054 CACAACATCGAGCAACTGTGTT 59.968 45.455 0.00 0.00 33.63 3.32
1055 2899 2.642995 CAACATCGAGCAACTGTGTTG 58.357 47.619 10.40 10.40 42.22 3.33
1063 2907 0.646895 GCAACTGTGTTGCAACTTGC 59.353 50.000 27.75 27.75 44.34 4.01
1076 2920 2.989166 GCAACTTGCAAGCAATTACTCC 59.011 45.455 26.27 1.34 44.26 3.85
1077 2921 3.578688 CAACTTGCAAGCAATTACTCCC 58.421 45.455 26.27 0.00 35.20 4.30
1078 2922 3.160679 ACTTGCAAGCAATTACTCCCT 57.839 42.857 26.27 0.00 35.20 4.20
1080 2924 2.128771 TGCAAGCAATTACTCCCTCC 57.871 50.000 0.00 0.00 0.00 4.30
1081 2925 1.354031 TGCAAGCAATTACTCCCTCCA 59.646 47.619 0.00 0.00 0.00 3.86
1083 2927 3.026694 GCAAGCAATTACTCCCTCCATT 58.973 45.455 0.00 0.00 0.00 3.16
1084 2928 3.067320 GCAAGCAATTACTCCCTCCATTC 59.933 47.826 0.00 0.00 0.00 2.67
1085 2929 3.584733 AGCAATTACTCCCTCCATTCC 57.415 47.619 0.00 0.00 0.00 3.01
1086 2930 2.852449 AGCAATTACTCCCTCCATTCCA 59.148 45.455 0.00 0.00 0.00 3.53
1087 2931 3.464833 AGCAATTACTCCCTCCATTCCAT 59.535 43.478 0.00 0.00 0.00 3.41
1088 2932 4.665009 AGCAATTACTCCCTCCATTCCATA 59.335 41.667 0.00 0.00 0.00 2.74
1089 2933 5.134339 AGCAATTACTCCCTCCATTCCATAA 59.866 40.000 0.00 0.00 0.00 1.90
1090 2934 6.012745 GCAATTACTCCCTCCATTCCATAAT 58.987 40.000 0.00 0.00 0.00 1.28
1091 2935 7.018550 AGCAATTACTCCCTCCATTCCATAATA 59.981 37.037 0.00 0.00 0.00 0.98
1092 2936 7.121315 GCAATTACTCCCTCCATTCCATAATAC 59.879 40.741 0.00 0.00 0.00 1.89
1093 2937 8.386264 CAATTACTCCCTCCATTCCATAATACT 58.614 37.037 0.00 0.00 0.00 2.12
1094 2938 7.947782 TTACTCCCTCCATTCCATAATACTT 57.052 36.000 0.00 0.00 0.00 2.24
1095 2939 6.192970 ACTCCCTCCATTCCATAATACTTG 57.807 41.667 0.00 0.00 0.00 3.16
1096 2940 5.672194 ACTCCCTCCATTCCATAATACTTGT 59.328 40.000 0.00 0.00 0.00 3.16
1097 2941 6.183361 ACTCCCTCCATTCCATAATACTTGTC 60.183 42.308 0.00 0.00 0.00 3.18
1098 2942 4.997395 CCCTCCATTCCATAATACTTGTCG 59.003 45.833 0.00 0.00 0.00 4.35
1099 2943 5.454755 CCCTCCATTCCATAATACTTGTCGT 60.455 44.000 0.00 0.00 0.00 4.34
1100 2944 5.466728 CCTCCATTCCATAATACTTGTCGTG 59.533 44.000 0.00 0.00 0.00 4.35
1101 2945 5.364778 TCCATTCCATAATACTTGTCGTGG 58.635 41.667 0.00 0.00 0.00 4.94
1102 2946 5.104693 TCCATTCCATAATACTTGTCGTGGT 60.105 40.000 0.00 0.00 0.00 4.16
1103 2947 5.588648 CCATTCCATAATACTTGTCGTGGTT 59.411 40.000 0.00 0.00 0.00 3.67
1104 2948 6.094881 CCATTCCATAATACTTGTCGTGGTTT 59.905 38.462 0.00 0.00 0.00 3.27
1105 2949 7.362574 CCATTCCATAATACTTGTCGTGGTTTT 60.363 37.037 0.00 0.00 0.00 2.43
1106 2950 8.670135 CATTCCATAATACTTGTCGTGGTTTTA 58.330 33.333 0.00 0.00 0.00 1.52
1107 2951 7.837202 TCCATAATACTTGTCGTGGTTTTAG 57.163 36.000 0.00 0.00 0.00 1.85
1108 2952 7.388437 TCCATAATACTTGTCGTGGTTTTAGT 58.612 34.615 0.00 0.00 0.00 2.24
1109 2953 7.879160 TCCATAATACTTGTCGTGGTTTTAGTT 59.121 33.333 0.00 0.00 0.00 2.24
1110 2954 8.173130 CCATAATACTTGTCGTGGTTTTAGTTC 58.827 37.037 0.00 0.00 0.00 3.01
1111 2955 8.714179 CATAATACTTGTCGTGGTTTTAGTTCA 58.286 33.333 0.00 0.00 0.00 3.18
1116 2960 4.695396 TGTCGTGGTTTTAGTTCAAGCTA 58.305 39.130 0.00 0.00 0.00 3.32
1143 2987 2.185608 GAGCCGCCTCTTCCACTC 59.814 66.667 0.00 0.00 35.16 3.51
1195 3042 3.323758 AAGCTCGGCGGTTATGGCA 62.324 57.895 7.21 0.00 0.00 4.92
1212 3068 2.051518 CAGCTGCTCCTCGTCTCCT 61.052 63.158 0.00 0.00 0.00 3.69
1323 3183 3.670625 TGGTAATCAACGTAGCTTTGCT 58.329 40.909 0.00 0.00 43.41 3.91
1338 3238 1.443828 TGCTTATGCATACCGCCGA 59.556 52.632 19.16 4.60 45.31 5.54
1340 3240 0.600255 GCTTATGCATACCGCCGACT 60.600 55.000 5.74 0.00 41.33 4.18
1383 3306 3.340814 AGTTTCTTGACCGATCAGCAT 57.659 42.857 0.00 0.00 35.83 3.79
1391 3317 3.333189 CGATCAGCATGCGGACGG 61.333 66.667 22.98 13.42 34.76 4.79
1551 3479 6.095377 GGATCAACAAGGTGACATTCAATTC 58.905 40.000 0.00 0.00 0.00 2.17
1687 3615 1.228033 CAGGATGCGGATCATGGCA 60.228 57.895 21.92 7.63 44.29 4.92
1794 4331 3.686128 TGTACATGTGCGTTCAAAACAC 58.314 40.909 9.11 0.00 34.86 3.32
1823 4360 5.508567 TCATTATTCAACATGAGCCTCCAA 58.491 37.500 0.00 0.00 0.00 3.53
1824 4361 6.131264 TCATTATTCAACATGAGCCTCCAAT 58.869 36.000 0.00 0.00 0.00 3.16
1825 4362 5.840243 TTATTCAACATGAGCCTCCAATG 57.160 39.130 0.00 0.00 0.00 2.82
1826 4363 2.885135 TCAACATGAGCCTCCAATGT 57.115 45.000 0.00 0.00 0.00 2.71
1827 4364 2.715046 TCAACATGAGCCTCCAATGTC 58.285 47.619 0.00 0.00 0.00 3.06
1828 4365 1.747355 CAACATGAGCCTCCAATGTCC 59.253 52.381 0.00 0.00 0.00 4.02
1829 4366 0.994247 ACATGAGCCTCCAATGTCCA 59.006 50.000 0.00 0.00 0.00 4.02
1843 4384 5.045942 TCCAATGTCCAATGTTGACTAGCTA 60.046 40.000 0.00 0.00 0.00 3.32
1956 4497 0.671163 CGGCATGCAGGCAAACAAAT 60.671 50.000 26.25 0.00 44.47 2.32
2042 4583 2.048127 GTGACCAGAGTGACGGGC 60.048 66.667 0.00 0.00 37.36 6.13
2068 4609 1.061812 AGGGGAGTACCAGATCTGCAT 60.062 52.381 17.76 9.87 42.91 3.96
2070 4611 2.042464 GGGAGTACCAGATCTGCATCA 58.958 52.381 17.76 0.00 39.85 3.07
2071 4612 2.224161 GGGAGTACCAGATCTGCATCAC 60.224 54.545 17.76 10.90 39.85 3.06
2072 4613 2.697751 GGAGTACCAGATCTGCATCACT 59.302 50.000 17.76 15.10 35.97 3.41
2073 4614 3.492309 GGAGTACCAGATCTGCATCACTG 60.492 52.174 17.76 4.32 35.97 3.66
2074 4615 3.102972 AGTACCAGATCTGCATCACTGT 58.897 45.455 17.76 10.12 0.00 3.55
2075 4616 2.398252 ACCAGATCTGCATCACTGTG 57.602 50.000 17.76 0.17 0.00 3.66
2076 4617 1.015109 CCAGATCTGCATCACTGTGC 58.985 55.000 17.76 0.00 45.25 4.57
2077 4618 1.015109 CAGATCTGCATCACTGTGCC 58.985 55.000 10.38 0.00 44.43 5.01
2190 5027 3.690460 TCCCTCCTCATTTTCTTCTTGC 58.310 45.455 0.00 0.00 0.00 4.01
2199 5052 8.950210 TCCTCATTTTCTTCTTGCTTATTAGTG 58.050 33.333 0.00 0.00 0.00 2.74
2269 5123 4.764679 TTGTGCAGCGAATAACTTGATT 57.235 36.364 0.00 0.00 0.00 2.57
2438 5311 8.267183 TCATCATCATCATCATCATCATCATCA 58.733 33.333 0.00 0.00 0.00 3.07
2502 5375 6.925211 TCTTGTCTTGACAAGGTAGATACTG 58.075 40.000 30.92 12.31 45.15 2.74
2503 5376 5.661056 TGTCTTGACAAGGTAGATACTGG 57.339 43.478 15.13 0.00 0.00 4.00
2555 5433 6.217693 AGAAATAGGTACCATTGTTCTCCCTT 59.782 38.462 15.94 0.00 0.00 3.95
2576 5642 7.052248 CCCTTTGGAAGTTAGGAATACGTATT 58.948 38.462 20.46 20.46 0.00 1.89
2790 5856 2.169769 CAAGGCATTCAAATGGGCAGAT 59.830 45.455 4.98 0.00 36.90 2.90
2887 5953 2.189558 TAGGCCAGGGGCTGACCTTA 62.190 60.000 23.27 0.01 41.50 2.69
3015 6096 4.270566 TGCTCAATTTGTTTGCATGAACAC 59.729 37.500 3.44 0.00 39.11 3.32
3032 6113 4.021807 TGAACACGAAGTACAATCTAGGCA 60.022 41.667 0.00 0.00 41.61 4.75
3111 6192 1.833630 CAAGGATGGCTCACAGGACTA 59.166 52.381 0.00 0.00 0.00 2.59
3161 6242 6.488006 ACAAACTGTGCAAGTGATAGATTTCT 59.512 34.615 0.00 0.00 39.81 2.52
3270 6351 0.237235 AAAACGTACTACCGCGACGA 59.763 50.000 21.77 0.00 39.81 4.20
3325 6406 0.606096 ACGTGATCATGTCCAACCGA 59.394 50.000 14.99 0.00 0.00 4.69
3481 6563 2.726832 AGACCAACTACTCAAGCGAC 57.273 50.000 0.00 0.00 0.00 5.19
3504 6586 1.813513 AGCATTGTCACGAGGGAAAG 58.186 50.000 0.00 0.00 0.00 2.62
3562 6652 4.591072 TCCCTTTTGGTTTTAGAACATGGG 59.409 41.667 0.00 0.00 37.51 4.00
3729 6841 2.569354 GGCAACGTTTGGATGGGCA 61.569 57.895 0.00 0.00 0.00 5.36
3953 7068 1.868498 CTTTGGCCATTTGCAACACAG 59.132 47.619 6.09 0.00 43.89 3.66
4059 7175 4.142116 GGGTCCAGAGTCTAAGAAACTAGC 60.142 50.000 0.00 0.00 0.00 3.42
4102 7224 6.566753 GCTGCGGGATTTCAAAGATTAGATAC 60.567 42.308 0.00 0.00 0.00 2.24
4104 7226 6.998074 TGCGGGATTTCAAAGATTAGATACAT 59.002 34.615 0.00 0.00 0.00 2.29
4208 7354 3.311167 TTTGGGGTATGCATGTGCTAT 57.689 42.857 10.16 1.56 42.66 2.97
4261 7407 1.371467 TTGGTGATGTGGAGGGATGT 58.629 50.000 0.00 0.00 0.00 3.06
4358 7504 6.014584 TCTCTAGTTGCAGGTCATGAAAGTTA 60.015 38.462 0.00 0.00 31.96 2.24
4359 7505 6.530120 TCTAGTTGCAGGTCATGAAAGTTAA 58.470 36.000 0.00 0.00 31.96 2.01
4468 7614 9.340695 CCTCCAAAAACAAATTTCTTGAAAAAC 57.659 29.630 0.00 0.00 0.00 2.43
4556 7705 5.413309 TCTTGATCCCTCTCTCTGTTTTC 57.587 43.478 0.00 0.00 0.00 2.29
4602 7752 2.693797 ACTCTGAATTTTGTGCAGCG 57.306 45.000 0.00 0.00 0.00 5.18
4620 7770 1.067915 GCGCCCTGAATGTTGCTTTTA 60.068 47.619 0.00 0.00 0.00 1.52
4701 7851 1.524621 GGATCGTGCCATCCCACAG 60.525 63.158 0.00 0.00 37.00 3.66
4764 7914 3.565482 TCGTACAAGTCACGTCCTAAAGT 59.435 43.478 0.00 0.00 40.27 2.66
4779 7929 6.515531 CGTCCTAAAGTGGTACTAACAGACAA 60.516 42.308 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 7.838771 AAATAGTGTTAAGTCCGATACAACC 57.161 36.000 0.00 0.00 0.00 3.77
35 36 9.859152 ACTTGAATTTTGGAAAATTATTTGGGA 57.141 25.926 9.52 0.00 45.70 4.37
65 66 9.658799 TGTCAAAAATTGTCCATAAGTTCAAAA 57.341 25.926 0.00 0.00 0.00 2.44
66 67 9.658799 TTGTCAAAAATTGTCCATAAGTTCAAA 57.341 25.926 0.00 0.00 0.00 2.69
67 68 9.658799 TTTGTCAAAAATTGTCCATAAGTTCAA 57.341 25.926 0.00 0.00 0.00 2.69
68 69 9.092876 GTTTGTCAAAAATTGTCCATAAGTTCA 57.907 29.630 0.00 0.00 0.00 3.18
69 70 8.547894 GGTTTGTCAAAAATTGTCCATAAGTTC 58.452 33.333 0.00 0.00 0.00 3.01
70 71 7.497579 GGGTTTGTCAAAAATTGTCCATAAGTT 59.502 33.333 0.00 0.00 0.00 2.66
71 72 6.989759 GGGTTTGTCAAAAATTGTCCATAAGT 59.010 34.615 0.00 0.00 0.00 2.24
72 73 6.145371 CGGGTTTGTCAAAAATTGTCCATAAG 59.855 38.462 0.00 0.00 0.00 1.73
73 74 5.986135 CGGGTTTGTCAAAAATTGTCCATAA 59.014 36.000 0.00 0.00 0.00 1.90
74 75 5.302059 TCGGGTTTGTCAAAAATTGTCCATA 59.698 36.000 0.00 0.00 0.00 2.74
75 76 4.100189 TCGGGTTTGTCAAAAATTGTCCAT 59.900 37.500 0.00 0.00 0.00 3.41
76 77 3.447586 TCGGGTTTGTCAAAAATTGTCCA 59.552 39.130 0.00 0.00 0.00 4.02
77 78 4.048241 TCGGGTTTGTCAAAAATTGTCC 57.952 40.909 0.00 0.00 0.00 4.02
78 79 7.883229 ATAATCGGGTTTGTCAAAAATTGTC 57.117 32.000 0.00 0.00 0.00 3.18
79 80 8.669946 AAATAATCGGGTTTGTCAAAAATTGT 57.330 26.923 0.00 0.00 0.00 2.71
80 81 9.943163 AAAAATAATCGGGTTTGTCAAAAATTG 57.057 25.926 0.00 0.00 0.00 2.32
112 113 9.835389 TCAGGAATTTCAAATTTTGTTCTTGAT 57.165 25.926 15.61 1.52 30.13 2.57
113 114 9.664332 TTCAGGAATTTCAAATTTTGTTCTTGA 57.336 25.926 15.61 15.61 31.87 3.02
114 115 9.706846 GTTCAGGAATTTCAAATTTTGTTCTTG 57.293 29.630 8.89 11.27 0.00 3.02
115 116 9.671279 AGTTCAGGAATTTCAAATTTTGTTCTT 57.329 25.926 8.89 0.46 0.00 2.52
116 117 9.671279 AAGTTCAGGAATTTCAAATTTTGTTCT 57.329 25.926 8.89 1.29 0.00 3.01
123 124 9.889128 TCAAGAAAAGTTCAGGAATTTCAAATT 57.111 25.926 0.00 0.00 34.91 1.82
124 125 9.889128 TTCAAGAAAAGTTCAGGAATTTCAAAT 57.111 25.926 9.51 0.00 34.91 2.32
125 126 9.717942 TTTCAAGAAAAGTTCAGGAATTTCAAA 57.282 25.926 9.51 1.95 34.91 2.69
126 127 9.717942 TTTTCAAGAAAAGTTCAGGAATTTCAA 57.282 25.926 3.98 0.00 35.57 2.69
127 128 9.150348 GTTTTCAAGAAAAGTTCAGGAATTTCA 57.850 29.630 8.14 0.00 40.53 2.69
128 129 9.150348 TGTTTTCAAGAAAAGTTCAGGAATTTC 57.850 29.630 8.14 1.65 40.53 2.17
129 130 9.671279 ATGTTTTCAAGAAAAGTTCAGGAATTT 57.329 25.926 8.14 0.00 40.53 1.82
130 131 9.671279 AATGTTTTCAAGAAAAGTTCAGGAATT 57.329 25.926 8.14 0.00 40.53 2.17
131 132 9.671279 AAATGTTTTCAAGAAAAGTTCAGGAAT 57.329 25.926 8.14 0.00 40.53 3.01
132 133 9.500785 AAAATGTTTTCAAGAAAAGTTCAGGAA 57.499 25.926 8.14 0.00 40.53 3.36
133 134 9.500785 AAAAATGTTTTCAAGAAAAGTTCAGGA 57.499 25.926 8.14 0.00 40.53 3.86
261 262 7.600752 TTCGAAGATTTCAAAAAGTGTTTTGGT 59.399 29.630 10.99 0.44 44.66 3.67
262 263 7.897800 GTTCGAAGATTTCAAAAAGTGTTTTGG 59.102 33.333 0.00 0.00 44.66 3.28
263 264 8.431593 TGTTCGAAGATTTCAAAAAGTGTTTTG 58.568 29.630 0.00 5.73 45.32 2.44
264 265 8.527567 TGTTCGAAGATTTCAAAAAGTGTTTT 57.472 26.923 0.00 0.00 34.76 2.43
265 266 8.527567 TTGTTCGAAGATTTCAAAAAGTGTTT 57.472 26.923 0.00 0.00 35.04 2.83
266 267 8.702163 ATTGTTCGAAGATTTCAAAAAGTGTT 57.298 26.923 0.00 0.00 35.04 3.32
267 268 8.702163 AATTGTTCGAAGATTTCAAAAAGTGT 57.298 26.923 0.00 0.00 35.04 3.55
272 273 9.254133 TGCATAAATTGTTCGAAGATTTCAAAA 57.746 25.926 17.82 6.28 35.04 2.44
273 274 8.809159 TGCATAAATTGTTCGAAGATTTCAAA 57.191 26.923 17.82 6.54 35.04 2.69
274 275 8.809159 TTGCATAAATTGTTCGAAGATTTCAA 57.191 26.923 17.82 14.27 35.04 2.69
275 276 8.809159 TTTGCATAAATTGTTCGAAGATTTCA 57.191 26.923 17.82 10.59 35.04 2.69
278 279 9.260002 ACTTTTTGCATAAATTGTTCGAAGATT 57.740 25.926 0.00 0.00 35.04 2.40
279 280 8.702438 CACTTTTTGCATAAATTGTTCGAAGAT 58.298 29.630 0.00 0.00 35.04 2.40
280 281 7.918033 TCACTTTTTGCATAAATTGTTCGAAGA 59.082 29.630 15.84 0.00 0.00 2.87
281 282 8.060020 TCACTTTTTGCATAAATTGTTCGAAG 57.940 30.769 15.84 0.55 0.00 3.79
282 283 7.993821 TCACTTTTTGCATAAATTGTTCGAA 57.006 28.000 15.84 0.00 0.00 3.71
283 284 8.586570 AATCACTTTTTGCATAAATTGTTCGA 57.413 26.923 15.84 3.52 0.00 3.71
284 285 9.649024 AAAATCACTTTTTGCATAAATTGTTCG 57.351 25.926 15.84 2.54 36.18 3.95
486 487 6.342906 CGGGGTTTTTAGGTTTTCTCTTTTT 58.657 36.000 0.00 0.00 0.00 1.94
487 488 5.163385 CCGGGGTTTTTAGGTTTTCTCTTTT 60.163 40.000 0.00 0.00 0.00 2.27
488 489 4.342951 CCGGGGTTTTTAGGTTTTCTCTTT 59.657 41.667 0.00 0.00 0.00 2.52
489 490 3.893200 CCGGGGTTTTTAGGTTTTCTCTT 59.107 43.478 0.00 0.00 0.00 2.85
490 491 3.117398 ACCGGGGTTTTTAGGTTTTCTCT 60.117 43.478 6.32 0.00 32.17 3.10
491 492 3.225104 ACCGGGGTTTTTAGGTTTTCTC 58.775 45.455 6.32 0.00 32.17 2.87
492 493 3.317455 ACCGGGGTTTTTAGGTTTTCT 57.683 42.857 6.32 0.00 32.17 2.52
496 497 3.499338 CCTAAACCGGGGTTTTTAGGTT 58.501 45.455 23.78 0.00 45.06 3.50
497 498 3.159213 CCTAAACCGGGGTTTTTAGGT 57.841 47.619 23.78 0.00 45.06 3.08
499 500 5.279106 CCTTTTCCTAAACCGGGGTTTTTAG 60.279 44.000 19.95 12.43 44.84 1.85
500 501 4.588106 CCTTTTCCTAAACCGGGGTTTTTA 59.412 41.667 19.95 3.65 44.84 1.52
501 502 3.388676 CCTTTTCCTAAACCGGGGTTTTT 59.611 43.478 19.95 0.00 44.84 1.94
502 503 2.967201 CCTTTTCCTAAACCGGGGTTTT 59.033 45.455 19.95 0.00 44.84 2.43
503 504 7.645185 AGAACCTTTTCCTAAACCGGGGTTT 62.645 44.000 18.88 18.88 40.64 3.27
504 505 1.500303 ACCTTTTCCTAAACCGGGGTT 59.500 47.619 6.32 1.45 40.45 4.11
505 506 1.151760 ACCTTTTCCTAAACCGGGGT 58.848 50.000 6.32 0.00 0.00 4.95
506 507 2.165167 GAACCTTTTCCTAAACCGGGG 58.835 52.381 6.32 0.00 0.00 5.73
507 508 3.079578 GAGAACCTTTTCCTAAACCGGG 58.920 50.000 6.32 0.00 31.28 5.73
508 509 3.746940 TGAGAACCTTTTCCTAAACCGG 58.253 45.455 0.00 0.00 31.28 5.28
509 510 5.761165 TTTGAGAACCTTTTCCTAAACCG 57.239 39.130 0.00 0.00 31.28 4.44
510 511 6.278363 GGTTTTGAGAACCTTTTCCTAAACC 58.722 40.000 0.00 0.00 38.67 3.27
511 512 5.975344 CGGTTTTGAGAACCTTTTCCTAAAC 59.025 40.000 3.27 0.00 38.15 2.01
512 513 5.068067 CCGGTTTTGAGAACCTTTTCCTAAA 59.932 40.000 3.27 0.00 38.15 1.85
513 514 4.581409 CCGGTTTTGAGAACCTTTTCCTAA 59.419 41.667 3.27 0.00 38.15 2.69
514 515 4.139038 CCGGTTTTGAGAACCTTTTCCTA 58.861 43.478 3.27 0.00 38.15 2.94
515 516 2.956333 CCGGTTTTGAGAACCTTTTCCT 59.044 45.455 3.27 0.00 38.15 3.36
516 517 2.545113 GCCGGTTTTGAGAACCTTTTCC 60.545 50.000 1.90 0.00 38.15 3.13
517 518 2.361119 AGCCGGTTTTGAGAACCTTTTC 59.639 45.455 1.90 0.00 38.15 2.29
518 519 2.384828 AGCCGGTTTTGAGAACCTTTT 58.615 42.857 1.90 0.00 38.15 2.27
519 520 2.067365 AGCCGGTTTTGAGAACCTTT 57.933 45.000 1.90 0.00 38.15 3.11
520 521 2.552373 CCTAGCCGGTTTTGAGAACCTT 60.552 50.000 1.90 0.00 38.15 3.50
521 522 1.003233 CCTAGCCGGTTTTGAGAACCT 59.997 52.381 1.90 0.00 38.15 3.50
522 523 1.002773 TCCTAGCCGGTTTTGAGAACC 59.997 52.381 1.90 0.00 36.96 3.62
523 524 2.467566 TCCTAGCCGGTTTTGAGAAC 57.532 50.000 1.90 0.00 0.00 3.01
524 525 2.551504 GGTTCCTAGCCGGTTTTGAGAA 60.552 50.000 1.90 0.00 0.00 2.87
525 526 1.002773 GGTTCCTAGCCGGTTTTGAGA 59.997 52.381 1.90 0.00 0.00 3.27
526 527 1.271163 TGGTTCCTAGCCGGTTTTGAG 60.271 52.381 1.90 0.00 0.00 3.02
527 528 0.766131 TGGTTCCTAGCCGGTTTTGA 59.234 50.000 1.90 0.00 0.00 2.69
528 529 1.743394 GATGGTTCCTAGCCGGTTTTG 59.257 52.381 1.90 0.00 0.00 2.44
529 530 1.677820 CGATGGTTCCTAGCCGGTTTT 60.678 52.381 1.90 0.00 0.00 2.43
530 531 0.107848 CGATGGTTCCTAGCCGGTTT 60.108 55.000 1.90 0.00 0.00 3.27
531 532 0.974010 TCGATGGTTCCTAGCCGGTT 60.974 55.000 1.90 0.00 0.00 4.44
532 533 1.380785 TCGATGGTTCCTAGCCGGT 60.381 57.895 1.90 0.00 0.00 5.28
533 534 1.107538 TCTCGATGGTTCCTAGCCGG 61.108 60.000 0.00 0.00 0.00 6.13
534 535 0.744874 TTCTCGATGGTTCCTAGCCG 59.255 55.000 0.00 0.00 0.00 5.52
535 536 1.069358 CCTTCTCGATGGTTCCTAGCC 59.931 57.143 0.00 0.00 0.00 3.93
536 537 1.757699 ACCTTCTCGATGGTTCCTAGC 59.242 52.381 0.00 0.00 35.58 3.42
555 556 7.728847 ATTAGCATTTTTCTGTTTTGGGAAC 57.271 32.000 0.00 0.00 0.00 3.62
556 557 7.228308 CCAATTAGCATTTTTCTGTTTTGGGAA 59.772 33.333 0.00 0.00 0.00 3.97
557 558 6.709846 CCAATTAGCATTTTTCTGTTTTGGGA 59.290 34.615 0.00 0.00 0.00 4.37
558 559 6.072563 CCCAATTAGCATTTTTCTGTTTTGGG 60.073 38.462 0.00 0.00 0.00 4.12
559 560 6.568271 GCCCAATTAGCATTTTTCTGTTTTGG 60.568 38.462 0.00 0.00 0.00 3.28
560 561 6.372981 GCCCAATTAGCATTTTTCTGTTTTG 58.627 36.000 0.00 0.00 0.00 2.44
561 562 5.473162 GGCCCAATTAGCATTTTTCTGTTTT 59.527 36.000 0.00 0.00 0.00 2.43
562 563 5.003160 GGCCCAATTAGCATTTTTCTGTTT 58.997 37.500 0.00 0.00 0.00 2.83
563 564 4.578871 GGCCCAATTAGCATTTTTCTGTT 58.421 39.130 0.00 0.00 0.00 3.16
564 565 3.368323 CGGCCCAATTAGCATTTTTCTGT 60.368 43.478 0.00 0.00 0.00 3.41
565 566 3.189285 CGGCCCAATTAGCATTTTTCTG 58.811 45.455 0.00 0.00 0.00 3.02
566 567 2.168313 CCGGCCCAATTAGCATTTTTCT 59.832 45.455 0.00 0.00 0.00 2.52
567 568 2.549926 CCGGCCCAATTAGCATTTTTC 58.450 47.619 0.00 0.00 0.00 2.29
568 569 1.406751 GCCGGCCCAATTAGCATTTTT 60.407 47.619 18.11 0.00 0.00 1.94
569 570 0.177836 GCCGGCCCAATTAGCATTTT 59.822 50.000 18.11 0.00 0.00 1.82
570 571 0.687427 AGCCGGCCCAATTAGCATTT 60.687 50.000 26.15 0.00 0.00 2.32
571 572 1.076044 AGCCGGCCCAATTAGCATT 60.076 52.632 26.15 0.00 0.00 3.56
572 573 1.529244 GAGCCGGCCCAATTAGCAT 60.529 57.895 26.15 0.00 0.00 3.79
573 574 2.124320 GAGCCGGCCCAATTAGCA 60.124 61.111 26.15 0.00 0.00 3.49
574 575 1.529244 ATGAGCCGGCCCAATTAGC 60.529 57.895 26.15 2.96 0.00 3.09
575 576 0.466189 ACATGAGCCGGCCCAATTAG 60.466 55.000 26.15 12.06 0.00 1.73
576 577 0.840617 TACATGAGCCGGCCCAATTA 59.159 50.000 26.15 10.47 0.00 1.40
577 578 0.185901 ATACATGAGCCGGCCCAATT 59.814 50.000 26.15 11.62 0.00 2.32
578 579 0.250901 GATACATGAGCCGGCCCAAT 60.251 55.000 26.15 13.37 0.00 3.16
579 580 1.148273 GATACATGAGCCGGCCCAA 59.852 57.895 26.15 9.69 0.00 4.12
580 581 1.418097 ATGATACATGAGCCGGCCCA 61.418 55.000 26.15 20.75 0.00 5.36
581 582 0.613260 TATGATACATGAGCCGGCCC 59.387 55.000 26.15 13.59 0.00 5.80
582 583 2.472695 TTATGATACATGAGCCGGCC 57.527 50.000 26.15 15.80 0.00 6.13
583 584 3.363970 CGTTTTATGATACATGAGCCGGC 60.364 47.826 21.89 21.89 0.00 6.13
584 585 3.807622 ACGTTTTATGATACATGAGCCGG 59.192 43.478 0.00 0.00 0.00 6.13
585 586 4.270084 ACACGTTTTATGATACATGAGCCG 59.730 41.667 0.00 0.00 0.00 5.52
586 587 5.064707 ACACACGTTTTATGATACATGAGCC 59.935 40.000 0.00 0.00 0.00 4.70
587 588 5.959527 CACACACGTTTTATGATACATGAGC 59.040 40.000 0.00 0.00 0.00 4.26
588 589 7.289587 TCACACACGTTTTATGATACATGAG 57.710 36.000 0.00 0.00 0.00 2.90
589 590 7.841915 ATCACACACGTTTTATGATACATGA 57.158 32.000 0.00 0.00 0.00 3.07
590 591 7.787480 CGTATCACACACGTTTTATGATACATG 59.213 37.037 24.41 13.91 46.55 3.21
591 592 7.042992 CCGTATCACACACGTTTTATGATACAT 60.043 37.037 24.41 0.00 46.55 2.29
592 593 6.253942 CCGTATCACACACGTTTTATGATACA 59.746 38.462 24.41 4.56 46.55 2.29
593 594 6.473131 TCCGTATCACACACGTTTTATGATAC 59.527 38.462 19.55 19.55 44.40 2.24
594 595 6.562518 TCCGTATCACACACGTTTTATGATA 58.437 36.000 0.00 0.00 37.71 2.15
595 596 5.412640 TCCGTATCACACACGTTTTATGAT 58.587 37.500 6.59 6.59 37.71 2.45
596 597 4.807443 TCCGTATCACACACGTTTTATGA 58.193 39.130 0.00 0.00 37.71 2.15
597 598 4.860352 TCTCCGTATCACACACGTTTTATG 59.140 41.667 0.00 0.00 37.71 1.90
598 599 5.063180 TCTCCGTATCACACACGTTTTAT 57.937 39.130 0.00 0.00 37.71 1.40
599 600 4.502171 TCTCCGTATCACACACGTTTTA 57.498 40.909 0.00 0.00 37.71 1.52
600 601 3.374220 TCTCCGTATCACACACGTTTT 57.626 42.857 0.00 0.00 37.71 2.43
601 602 3.054878 GTTCTCCGTATCACACACGTTT 58.945 45.455 0.00 0.00 37.71 3.60
602 603 2.295349 AGTTCTCCGTATCACACACGTT 59.705 45.455 0.00 0.00 37.71 3.99
603 604 1.884579 AGTTCTCCGTATCACACACGT 59.115 47.619 0.00 0.00 37.71 4.49
604 605 2.631418 AGTTCTCCGTATCACACACG 57.369 50.000 0.00 0.00 39.10 4.49
605 606 2.412089 GCAAGTTCTCCGTATCACACAC 59.588 50.000 0.00 0.00 0.00 3.82
606 607 2.611971 GGCAAGTTCTCCGTATCACACA 60.612 50.000 0.00 0.00 0.00 3.72
607 608 2.000447 GGCAAGTTCTCCGTATCACAC 59.000 52.381 0.00 0.00 0.00 3.82
608 609 1.403647 CGGCAAGTTCTCCGTATCACA 60.404 52.381 5.21 0.00 40.72 3.58
609 610 1.278238 CGGCAAGTTCTCCGTATCAC 58.722 55.000 5.21 0.00 40.72 3.06
610 611 0.459585 GCGGCAAGTTCTCCGTATCA 60.460 55.000 12.92 0.00 46.79 2.15
611 612 0.459585 TGCGGCAAGTTCTCCGTATC 60.460 55.000 0.00 0.49 46.79 2.24
612 613 0.460284 CTGCGGCAAGTTCTCCGTAT 60.460 55.000 3.44 0.00 46.79 3.06
613 614 1.080093 CTGCGGCAAGTTCTCCGTA 60.080 57.895 3.44 8.71 46.79 4.02
614 615 2.357517 CTGCGGCAAGTTCTCCGT 60.358 61.111 3.44 0.00 46.79 4.69
616 617 0.449388 CATTCTGCGGCAAGTTCTCC 59.551 55.000 3.44 0.00 0.00 3.71
617 618 0.179179 GCATTCTGCGGCAAGTTCTC 60.179 55.000 3.44 0.00 31.71 2.87
618 619 1.878775 GCATTCTGCGGCAAGTTCT 59.121 52.632 3.44 0.00 31.71 3.01
619 620 4.465413 GCATTCTGCGGCAAGTTC 57.535 55.556 3.44 0.00 31.71 3.01
628 629 1.233285 CCCTATCTGCCGCATTCTGC 61.233 60.000 0.00 0.00 40.69 4.26
629 630 0.107456 ACCCTATCTGCCGCATTCTG 59.893 55.000 0.00 0.00 0.00 3.02
630 631 0.839946 AACCCTATCTGCCGCATTCT 59.160 50.000 0.00 0.00 0.00 2.40
631 632 1.680338 AAACCCTATCTGCCGCATTC 58.320 50.000 0.00 0.00 0.00 2.67
632 633 2.143876 AAAACCCTATCTGCCGCATT 57.856 45.000 0.00 0.00 0.00 3.56
633 634 2.143876 AAAAACCCTATCTGCCGCAT 57.856 45.000 0.00 0.00 0.00 4.73
634 635 3.662290 AAAAACCCTATCTGCCGCA 57.338 47.368 0.00 0.00 0.00 5.69
649 650 4.213270 CCTGCACACGTTGATCTAGAAAAA 59.787 41.667 0.00 0.00 0.00 1.94
650 651 3.745975 CCTGCACACGTTGATCTAGAAAA 59.254 43.478 0.00 0.00 0.00 2.29
651 652 3.006430 TCCTGCACACGTTGATCTAGAAA 59.994 43.478 0.00 0.00 0.00 2.52
652 653 2.560981 TCCTGCACACGTTGATCTAGAA 59.439 45.455 0.00 0.00 0.00 2.10
653 654 2.167662 TCCTGCACACGTTGATCTAGA 58.832 47.619 0.00 0.00 0.00 2.43
654 655 2.654749 TCCTGCACACGTTGATCTAG 57.345 50.000 0.00 0.00 0.00 2.43
655 656 3.610040 AATCCTGCACACGTTGATCTA 57.390 42.857 0.00 0.00 0.00 1.98
656 657 2.479566 AATCCTGCACACGTTGATCT 57.520 45.000 0.00 0.00 0.00 2.75
657 658 3.559238 AAAATCCTGCACACGTTGATC 57.441 42.857 0.00 0.00 0.00 2.92
658 659 3.609175 CGAAAAATCCTGCACACGTTGAT 60.609 43.478 0.00 0.00 0.00 2.57
659 660 2.286713 CGAAAAATCCTGCACACGTTGA 60.287 45.455 0.00 0.00 0.00 3.18
660 661 2.043411 CGAAAAATCCTGCACACGTTG 58.957 47.619 0.00 0.00 0.00 4.10
661 662 1.673920 ACGAAAAATCCTGCACACGTT 59.326 42.857 0.00 0.00 0.00 3.99
662 663 1.305201 ACGAAAAATCCTGCACACGT 58.695 45.000 0.00 0.00 0.00 4.49
663 664 2.399396 AACGAAAAATCCTGCACACG 57.601 45.000 0.00 0.00 0.00 4.49
664 665 5.332280 GCTAAAAACGAAAAATCCTGCACAC 60.332 40.000 0.00 0.00 0.00 3.82
665 666 4.742659 GCTAAAAACGAAAAATCCTGCACA 59.257 37.500 0.00 0.00 0.00 4.57
666 667 4.143618 CGCTAAAAACGAAAAATCCTGCAC 60.144 41.667 0.00 0.00 0.00 4.57
667 668 3.978217 CGCTAAAAACGAAAAATCCTGCA 59.022 39.130 0.00 0.00 0.00 4.41
668 669 3.181544 GCGCTAAAAACGAAAAATCCTGC 60.182 43.478 0.00 0.00 0.00 4.85
669 670 3.057609 CGCGCTAAAAACGAAAAATCCTG 59.942 43.478 5.56 0.00 0.00 3.86
670 671 3.231160 CGCGCTAAAAACGAAAAATCCT 58.769 40.909 5.56 0.00 0.00 3.24
671 672 2.340283 CCGCGCTAAAAACGAAAAATCC 59.660 45.455 5.56 0.00 0.00 3.01
672 673 3.227948 TCCGCGCTAAAAACGAAAAATC 58.772 40.909 5.56 0.00 0.00 2.17
673 674 3.231160 CTCCGCGCTAAAAACGAAAAAT 58.769 40.909 5.56 0.00 0.00 1.82
674 675 2.641912 CTCCGCGCTAAAAACGAAAAA 58.358 42.857 5.56 0.00 0.00 1.94
675 676 1.660896 GCTCCGCGCTAAAAACGAAAA 60.661 47.619 5.56 0.00 35.14 2.29
676 677 0.110554 GCTCCGCGCTAAAAACGAAA 60.111 50.000 5.56 0.00 35.14 3.46
677 678 1.494189 GCTCCGCGCTAAAAACGAA 59.506 52.632 5.56 0.00 35.14 3.85
678 679 3.161817 GCTCCGCGCTAAAAACGA 58.838 55.556 5.56 0.00 35.14 3.85
687 688 2.533391 ATTCAAAAGCAGCTCCGCGC 62.533 55.000 0.00 0.00 36.85 6.86
688 689 0.109597 AATTCAAAAGCAGCTCCGCG 60.110 50.000 0.00 0.00 36.85 6.46
689 690 2.162408 ACTAATTCAAAAGCAGCTCCGC 59.838 45.455 0.00 0.00 0.00 5.54
690 691 4.494855 GCTACTAATTCAAAAGCAGCTCCG 60.495 45.833 0.00 0.00 30.78 4.63
691 692 4.396166 TGCTACTAATTCAAAAGCAGCTCC 59.604 41.667 0.00 0.00 38.22 4.70
692 693 5.327891 GTGCTACTAATTCAAAAGCAGCTC 58.672 41.667 0.00 0.00 43.35 4.09
693 694 4.142816 CGTGCTACTAATTCAAAAGCAGCT 60.143 41.667 0.00 0.00 43.35 4.24
694 695 4.091424 CGTGCTACTAATTCAAAAGCAGC 58.909 43.478 5.28 0.00 43.35 5.25
695 696 5.530519 TCGTGCTACTAATTCAAAAGCAG 57.469 39.130 5.28 2.14 43.35 4.24
696 697 5.641636 TGATCGTGCTACTAATTCAAAAGCA 59.358 36.000 0.00 0.00 40.68 3.91
697 698 5.960105 GTGATCGTGCTACTAATTCAAAAGC 59.040 40.000 0.00 0.00 0.00 3.51
698 699 7.060600 TGTGATCGTGCTACTAATTCAAAAG 57.939 36.000 0.00 0.00 0.00 2.27
699 700 6.871492 TCTGTGATCGTGCTACTAATTCAAAA 59.129 34.615 0.00 0.00 0.00 2.44
700 701 6.394809 TCTGTGATCGTGCTACTAATTCAAA 58.605 36.000 0.00 0.00 0.00 2.69
701 702 5.961272 TCTGTGATCGTGCTACTAATTCAA 58.039 37.500 0.00 0.00 0.00 2.69
702 703 5.576447 TCTGTGATCGTGCTACTAATTCA 57.424 39.130 0.00 0.00 0.00 2.57
703 704 4.442733 GCTCTGTGATCGTGCTACTAATTC 59.557 45.833 0.00 0.00 0.00 2.17
704 705 4.363999 GCTCTGTGATCGTGCTACTAATT 58.636 43.478 0.00 0.00 0.00 1.40
705 706 3.243569 GGCTCTGTGATCGTGCTACTAAT 60.244 47.826 0.00 0.00 0.00 1.73
706 707 2.099263 GGCTCTGTGATCGTGCTACTAA 59.901 50.000 0.00 0.00 0.00 2.24
707 708 1.676529 GGCTCTGTGATCGTGCTACTA 59.323 52.381 0.00 0.00 0.00 1.82
708 709 0.457851 GGCTCTGTGATCGTGCTACT 59.542 55.000 0.00 0.00 0.00 2.57
709 710 0.867753 CGGCTCTGTGATCGTGCTAC 60.868 60.000 0.00 0.00 0.00 3.58
710 711 1.313091 ACGGCTCTGTGATCGTGCTA 61.313 55.000 0.00 0.00 34.40 3.49
711 712 1.313091 TACGGCTCTGTGATCGTGCT 61.313 55.000 0.00 0.00 37.10 4.40
712 713 0.249073 ATACGGCTCTGTGATCGTGC 60.249 55.000 0.00 0.00 37.10 5.34
713 714 1.481240 CATACGGCTCTGTGATCGTG 58.519 55.000 0.00 0.00 37.10 4.35
714 715 0.249073 GCATACGGCTCTGTGATCGT 60.249 55.000 0.00 0.00 40.25 3.73
715 716 2.510948 GCATACGGCTCTGTGATCG 58.489 57.895 0.00 0.00 40.25 3.69
725 726 1.512926 CCACTAATCCAGCATACGGC 58.487 55.000 0.00 0.00 45.30 5.68
726 727 1.512926 GCCACTAATCCAGCATACGG 58.487 55.000 0.00 0.00 0.00 4.02
727 728 1.512926 GGCCACTAATCCAGCATACG 58.487 55.000 0.00 0.00 0.00 3.06
728 729 1.545651 GGGGCCACTAATCCAGCATAC 60.546 57.143 4.39 0.00 0.00 2.39
729 730 0.771127 GGGGCCACTAATCCAGCATA 59.229 55.000 4.39 0.00 0.00 3.14
730 731 0.995675 AGGGGCCACTAATCCAGCAT 60.996 55.000 5.10 0.00 0.00 3.79
731 732 1.619363 AGGGGCCACTAATCCAGCA 60.619 57.895 5.10 0.00 0.00 4.41
732 733 1.152881 CAGGGGCCACTAATCCAGC 60.153 63.158 7.53 0.00 0.00 4.85
733 734 0.471617 CTCAGGGGCCACTAATCCAG 59.528 60.000 7.53 0.00 0.00 3.86
734 735 0.253160 ACTCAGGGGCCACTAATCCA 60.253 55.000 7.53 0.00 0.00 3.41
735 736 0.919710 AACTCAGGGGCCACTAATCC 59.080 55.000 7.53 0.00 0.00 3.01
748 749 3.955771 TTTTCCGGTTCGAAAACTCAG 57.044 42.857 0.00 0.00 36.93 3.35
769 770 4.796231 CCGTTCCCTGTCTCGCCG 62.796 72.222 0.00 0.00 0.00 6.46
800 802 3.368635 CCACTTACACTAACGTGGCCATA 60.369 47.826 9.72 0.00 45.50 2.74
813 1202 6.131544 AGTCAAAACATGTTCCACTTACAC 57.868 37.500 12.39 3.26 0.00 2.90
833 2579 7.082602 GGCTAGTTTTAGGTTTGCTTTAAGTC 58.917 38.462 0.00 0.00 0.00 3.01
856 2602 3.680786 GGTGGTTTCGCCCTTGGC 61.681 66.667 0.00 0.00 46.75 4.52
857 2603 1.524008 GAAGGTGGTTTCGCCCTTGG 61.524 60.000 0.00 0.00 44.41 3.61
858 2604 1.852067 CGAAGGTGGTTTCGCCCTTG 61.852 60.000 0.00 0.00 44.41 3.61
859 2605 1.599797 CGAAGGTGGTTTCGCCCTT 60.600 57.895 0.00 0.00 44.41 3.95
860 2606 2.032071 CGAAGGTGGTTTCGCCCT 59.968 61.111 0.00 0.00 44.41 5.19
865 2611 0.041576 GCACGAACGAAGGTGGTTTC 60.042 55.000 0.14 0.00 34.76 2.78
866 2612 0.463116 AGCACGAACGAAGGTGGTTT 60.463 50.000 0.14 0.00 41.67 3.27
867 2613 0.390124 TAGCACGAACGAAGGTGGTT 59.610 50.000 12.55 0.00 41.67 3.67
868 2614 0.038526 CTAGCACGAACGAAGGTGGT 60.039 55.000 12.13 12.13 45.73 4.16
869 2615 1.352156 GCTAGCACGAACGAAGGTGG 61.352 60.000 10.63 2.53 34.76 4.61
870 2616 1.352156 GGCTAGCACGAACGAAGGTG 61.352 60.000 18.24 0.00 37.22 4.00
871 2617 1.080025 GGCTAGCACGAACGAAGGT 60.080 57.895 18.24 1.78 0.00 3.50
872 2618 0.460284 ATGGCTAGCACGAACGAAGG 60.460 55.000 18.24 0.00 0.00 3.46
873 2619 1.359848 AATGGCTAGCACGAACGAAG 58.640 50.000 18.24 0.00 0.00 3.79
914 2689 1.345415 GGAGGGTTTCCACTAACGACA 59.655 52.381 0.00 0.00 46.01 4.35
915 2690 2.090400 GGAGGGTTTCCACTAACGAC 57.910 55.000 0.00 0.00 46.01 4.34
1040 2869 0.376852 GTTGCAACACAGTTGCTCGA 59.623 50.000 28.30 15.66 45.13 4.04
1055 2899 2.989166 GGAGTAATTGCTTGCAAGTTGC 59.011 45.455 26.55 21.17 45.29 4.17
1057 2901 3.500343 AGGGAGTAATTGCTTGCAAGTT 58.500 40.909 26.55 15.86 0.00 2.66
1059 2903 2.424956 GGAGGGAGTAATTGCTTGCAAG 59.575 50.000 22.44 22.44 0.00 4.01
1060 2904 2.224992 TGGAGGGAGTAATTGCTTGCAA 60.225 45.455 10.57 10.57 0.00 4.08
1061 2905 1.354031 TGGAGGGAGTAATTGCTTGCA 59.646 47.619 0.00 0.00 0.00 4.08
1062 2906 2.128771 TGGAGGGAGTAATTGCTTGC 57.871 50.000 0.00 0.00 0.00 4.01
1063 2907 3.633986 GGAATGGAGGGAGTAATTGCTTG 59.366 47.826 0.00 0.00 0.00 4.01
1064 2908 3.269381 TGGAATGGAGGGAGTAATTGCTT 59.731 43.478 0.00 0.00 0.00 3.91
1065 2909 2.852449 TGGAATGGAGGGAGTAATTGCT 59.148 45.455 0.00 0.00 0.00 3.91
1067 2911 8.386264 AGTATTATGGAATGGAGGGAGTAATTG 58.614 37.037 0.00 0.00 0.00 2.32
1069 2913 8.386264 CAAGTATTATGGAATGGAGGGAGTAAT 58.614 37.037 0.00 0.00 0.00 1.89
1070 2914 7.349859 ACAAGTATTATGGAATGGAGGGAGTAA 59.650 37.037 0.00 0.00 0.00 2.24
1072 2916 5.672194 ACAAGTATTATGGAATGGAGGGAGT 59.328 40.000 0.00 0.00 0.00 3.85
1073 2917 6.192970 ACAAGTATTATGGAATGGAGGGAG 57.807 41.667 0.00 0.00 0.00 4.30
1074 2918 5.221641 CGACAAGTATTATGGAATGGAGGGA 60.222 44.000 0.00 0.00 0.00 4.20
1075 2919 4.997395 CGACAAGTATTATGGAATGGAGGG 59.003 45.833 0.00 0.00 0.00 4.30
1076 2920 5.466728 CACGACAAGTATTATGGAATGGAGG 59.533 44.000 0.00 0.00 0.00 4.30
1077 2921 5.466728 CCACGACAAGTATTATGGAATGGAG 59.533 44.000 0.00 0.00 0.00 3.86
1078 2922 5.104693 ACCACGACAAGTATTATGGAATGGA 60.105 40.000 0.00 0.00 0.00 3.41
1080 2924 6.677781 AACCACGACAAGTATTATGGAATG 57.322 37.500 0.00 0.00 0.00 2.67
1081 2925 7.696992 AAAACCACGACAAGTATTATGGAAT 57.303 32.000 0.00 0.00 0.00 3.01
1083 2927 7.388437 ACTAAAACCACGACAAGTATTATGGA 58.612 34.615 0.00 0.00 0.00 3.41
1084 2928 7.605410 ACTAAAACCACGACAAGTATTATGG 57.395 36.000 0.00 0.00 0.00 2.74
1085 2929 8.714179 TGAACTAAAACCACGACAAGTATTATG 58.286 33.333 0.00 0.00 0.00 1.90
1086 2930 8.836268 TGAACTAAAACCACGACAAGTATTAT 57.164 30.769 0.00 0.00 0.00 1.28
1087 2931 8.659925 TTGAACTAAAACCACGACAAGTATTA 57.340 30.769 0.00 0.00 0.00 0.98
1088 2932 7.556733 TTGAACTAAAACCACGACAAGTATT 57.443 32.000 0.00 0.00 0.00 1.89
1089 2933 6.293244 GCTTGAACTAAAACCACGACAAGTAT 60.293 38.462 0.00 0.00 36.76 2.12
1090 2934 5.006941 GCTTGAACTAAAACCACGACAAGTA 59.993 40.000 0.00 0.00 36.76 2.24
1091 2935 4.201881 GCTTGAACTAAAACCACGACAAGT 60.202 41.667 0.00 0.00 36.76 3.16
1092 2936 4.035208 AGCTTGAACTAAAACCACGACAAG 59.965 41.667 0.00 0.00 37.24 3.16
1093 2937 3.942748 AGCTTGAACTAAAACCACGACAA 59.057 39.130 0.00 0.00 0.00 3.18
1094 2938 3.537580 AGCTTGAACTAAAACCACGACA 58.462 40.909 0.00 0.00 0.00 4.35
1095 2939 4.375706 CGTAGCTTGAACTAAAACCACGAC 60.376 45.833 0.00 0.00 0.00 4.34
1096 2940 3.737266 CGTAGCTTGAACTAAAACCACGA 59.263 43.478 0.00 0.00 0.00 4.35
1097 2941 3.737266 TCGTAGCTTGAACTAAAACCACG 59.263 43.478 0.00 0.00 0.00 4.94
1098 2942 5.662211 TTCGTAGCTTGAACTAAAACCAC 57.338 39.130 0.00 0.00 0.00 4.16
1099 2943 6.483974 TCATTTCGTAGCTTGAACTAAAACCA 59.516 34.615 0.00 0.00 0.00 3.67
1100 2944 6.894828 TCATTTCGTAGCTTGAACTAAAACC 58.105 36.000 0.00 0.00 0.00 3.27
1101 2945 7.015877 CCTCATTTCGTAGCTTGAACTAAAAC 58.984 38.462 0.00 0.00 0.00 2.43
1102 2946 6.932400 TCCTCATTTCGTAGCTTGAACTAAAA 59.068 34.615 0.00 0.00 0.00 1.52
1103 2947 6.460781 TCCTCATTTCGTAGCTTGAACTAAA 58.539 36.000 0.00 0.00 0.00 1.85
1104 2948 6.032956 TCCTCATTTCGTAGCTTGAACTAA 57.967 37.500 0.00 0.00 0.00 2.24
1105 2949 5.651530 CTCCTCATTTCGTAGCTTGAACTA 58.348 41.667 0.00 0.00 0.00 2.24
1106 2950 4.499183 CTCCTCATTTCGTAGCTTGAACT 58.501 43.478 0.00 0.00 0.00 3.01
1107 2951 3.062774 GCTCCTCATTTCGTAGCTTGAAC 59.937 47.826 0.00 0.00 0.00 3.18
1108 2952 3.262420 GCTCCTCATTTCGTAGCTTGAA 58.738 45.455 0.00 0.00 0.00 2.69
1109 2953 2.418746 GGCTCCTCATTTCGTAGCTTGA 60.419 50.000 0.00 0.00 33.67 3.02
1110 2954 1.936547 GGCTCCTCATTTCGTAGCTTG 59.063 52.381 0.00 0.00 33.67 4.01
1111 2955 1.471676 CGGCTCCTCATTTCGTAGCTT 60.472 52.381 0.00 0.00 33.67 3.74
1116 2960 2.125106 GGCGGCTCCTCATTTCGT 60.125 61.111 0.00 0.00 0.00 3.85
1143 2987 2.202676 GCACGAGGAGCGAGGAAG 60.203 66.667 0.00 0.00 44.57 3.46
1188 3035 1.144716 CGAGGAGCAGCTGCCATAA 59.855 57.895 34.39 0.00 43.38 1.90
1195 3042 1.752694 GAGGAGACGAGGAGCAGCT 60.753 63.158 0.00 0.00 0.00 4.24
1212 3068 4.047059 GGTTCACCGCTCGGACGA 62.047 66.667 15.95 8.09 38.96 4.20
1253 3109 3.866582 GGACGGCAGGATCCAGGG 61.867 72.222 15.82 4.00 34.87 4.45
1254 3110 3.866582 GGGACGGCAGGATCCAGG 61.867 72.222 15.82 6.81 36.65 4.45
1383 3306 3.740397 CCTGTACGTCCGTCCGCA 61.740 66.667 0.00 0.00 0.00 5.69
1551 3479 0.030638 CTGGTTGCCGAACACTTTGG 59.969 55.000 0.00 0.00 37.26 3.28
1660 3588 1.262417 TCCGCATCCTGTACTTGTCA 58.738 50.000 0.00 0.00 0.00 3.58
1687 3615 1.073199 CAAGAAGAGCCCGTTGGGT 59.927 57.895 3.40 0.00 46.51 4.51
1770 3844 4.571176 TGTTTTGAACGCACATGTACAGTA 59.429 37.500 0.00 0.00 0.00 2.74
1772 3846 3.723764 GTGTTTTGAACGCACATGTACAG 59.276 43.478 0.00 0.00 41.43 2.74
1774 3848 3.686128 TGTGTTTTGAACGCACATGTAC 58.314 40.909 0.00 0.00 46.08 2.90
1794 4331 9.622004 GAGGCTCATGTTGAATAATGAAATATG 57.378 33.333 10.25 0.00 32.60 1.78
1798 4335 5.951148 TGGAGGCTCATGTTGAATAATGAAA 59.049 36.000 17.69 0.00 32.60 2.69
1800 4337 5.114764 TGGAGGCTCATGTTGAATAATGA 57.885 39.130 17.69 0.00 0.00 2.57
1823 4360 5.683876 ACTAGCTAGTCAACATTGGACAT 57.316 39.130 20.95 0.00 37.74 3.06
1843 4384 3.181474 GCGCTAGTCAAAATCCCTAGACT 60.181 47.826 0.00 0.00 43.25 3.24
2010 4551 4.986587 CACCGCGAACACCGACGA 62.987 66.667 8.23 0.00 41.76 4.20
2068 4609 4.425180 TTAAAACAGTAGGGCACAGTGA 57.575 40.909 4.15 0.00 0.00 3.41
2070 4611 5.381757 TGAATTAAAACAGTAGGGCACAGT 58.618 37.500 0.00 0.00 0.00 3.55
2071 4612 5.705441 TCTGAATTAAAACAGTAGGGCACAG 59.295 40.000 10.54 0.00 35.84 3.66
2072 4613 5.626142 TCTGAATTAAAACAGTAGGGCACA 58.374 37.500 10.54 0.00 35.84 4.57
2073 4614 5.392057 GCTCTGAATTAAAACAGTAGGGCAC 60.392 44.000 10.54 0.00 35.84 5.01
2074 4615 4.700213 GCTCTGAATTAAAACAGTAGGGCA 59.300 41.667 10.54 0.00 35.84 5.36
2075 4616 4.944317 AGCTCTGAATTAAAACAGTAGGGC 59.056 41.667 10.54 0.00 35.84 5.19
2190 5027 8.391106 GCAAGTGGACAAAGATACACTAATAAG 58.609 37.037 0.00 0.00 42.85 1.73
2269 5123 9.066892 GCAATGATTTCAAACTAGGTATATCCA 57.933 33.333 0.00 0.00 39.02 3.41
2450 5323 7.630924 AGCACACTTCTCGCAATAATAATAAC 58.369 34.615 0.00 0.00 0.00 1.89
2451 5324 7.786178 AGCACACTTCTCGCAATAATAATAA 57.214 32.000 0.00 0.00 0.00 1.40
2452 5325 7.786178 AAGCACACTTCTCGCAATAATAATA 57.214 32.000 0.00 0.00 0.00 0.98
2502 5375 7.011202 GCTAAGTTATAAACTCTGCCAACTACC 59.989 40.741 0.00 0.00 41.91 3.18
2503 5376 7.764901 AGCTAAGTTATAAACTCTGCCAACTAC 59.235 37.037 11.01 0.00 41.91 2.73
2576 5642 5.279406 CCACAAAATTGAGGTGCCAAGAATA 60.279 40.000 0.00 0.00 34.70 1.75
2887 5953 5.392811 GCTTTAGTTTGCTCAAGATGATGCT 60.393 40.000 0.00 0.00 29.72 3.79
2981 6062 8.547069 GCAAACAAATTGAGCATTTACAAAGTA 58.453 29.630 0.00 0.00 41.85 2.24
2982 6063 7.065563 TGCAAACAAATTGAGCATTTACAAAGT 59.934 29.630 0.00 0.00 41.85 2.66
3015 6096 5.532557 TGATGATGCCTAGATTGTACTTCG 58.467 41.667 0.00 0.00 0.00 3.79
3032 6113 3.461061 CTGCGTGTAGGTCAATGATGAT 58.539 45.455 0.00 0.00 38.01 2.45
3111 6192 1.839747 TTAGTGTCGGTGGTGCCCT 60.840 57.895 0.00 0.00 0.00 5.19
3161 6242 2.173758 TTGGCGTACCTGGATGCGAA 62.174 55.000 0.00 1.80 36.63 4.70
3270 6351 0.038526 CTTCCTGACGGCGTTGTACT 60.039 55.000 16.19 0.00 0.00 2.73
3325 6406 2.687566 GGGTCCGGGGATGACAGT 60.688 66.667 0.00 0.00 34.36 3.55
3481 6563 1.207089 TCCCTCGTGACAATGCTAAGG 59.793 52.381 0.00 0.00 0.00 2.69
3504 6586 4.267043 CCTACAAAGGTGAGGGGACCAC 62.267 59.091 0.00 0.00 45.48 4.16
3529 6611 9.643735 TCTAAAACCAAAAGGGAATAGTTACAA 57.356 29.630 0.00 0.00 41.15 2.41
3607 6708 5.183140 CCCATTCTCCTACGAAAAACATGTT 59.817 40.000 4.92 4.92 0.00 2.71
3617 6729 0.325296 AGCCACCCATTCTCCTACGA 60.325 55.000 0.00 0.00 0.00 3.43
3729 6841 7.397221 TGTTCACATTCTTGAGAGTCCAATAT 58.603 34.615 0.00 0.00 0.00 1.28
3928 7043 3.577848 TGTTGCAAATGGCCAAAGACTAT 59.422 39.130 10.96 0.00 43.89 2.12
3953 7068 9.216117 GGTGTATATATTTCAACACAGGATACC 57.784 37.037 15.16 0.00 43.13 2.73
4059 7175 1.059369 CAACGCGCGGAGAAATCAG 59.941 57.895 35.22 8.40 0.00 2.90
4261 7407 7.147828 CCCACTGACTCTAATTCTCTCAACATA 60.148 40.741 0.00 0.00 0.00 2.29
4392 7538 6.257849 CCTAGTTCGTGCATATGTGTGTATTT 59.742 38.462 4.29 0.00 0.00 1.40
4427 7573 1.982958 TGGAGGTTACTCAAAGTCCCC 59.017 52.381 0.00 0.00 45.81 4.81
4430 7576 6.445357 TGTTTTTGGAGGTTACTCAAAGTC 57.555 37.500 0.00 0.00 45.81 3.01
4431 7577 6.844097 TTGTTTTTGGAGGTTACTCAAAGT 57.156 33.333 0.00 0.00 45.81 2.66
4556 7705 6.438259 TCCTCTATTCTTGTTAGAGTGACG 57.562 41.667 6.90 0.00 40.64 4.35
4602 7752 5.482006 AGAAATAAAAGCAACATTCAGGGC 58.518 37.500 0.00 0.00 0.00 5.19
4701 7851 3.124560 GCCTATTAGACTTGTTCTCGGC 58.875 50.000 0.00 0.00 35.55 5.54
4764 7914 7.758076 CGTTATTCAGATTGTCTGTTAGTACCA 59.242 37.037 6.83 0.00 44.58 3.25
4779 7929 6.979238 GGTCAGTTAGTTAGCGTTATTCAGAT 59.021 38.462 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.