Multiple sequence alignment - TraesCS5A01G052500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G052500 chr5A 100.000 2305 0 0 1 2305 47586473 47584169 0.000000e+00 4257.0
1 TraesCS5A01G052500 chr5A 100.000 309 0 0 2634 2942 47583840 47583532 3.290000e-159 571.0
2 TraesCS5A01G052500 chr5D 93.892 1588 71 11 733 2305 59216121 59214545 0.000000e+00 2372.0
3 TraesCS5A01G052500 chr5D 92.982 114 8 0 2638 2751 59214455 59214342 1.810000e-37 167.0
4 TraesCS5A01G052500 chr5D 92.754 69 4 1 398 465 501115784 501115852 6.710000e-17 99.0
5 TraesCS5A01G052500 chr5B 92.197 1320 67 18 761 2069 72082234 72083528 0.000000e+00 1834.0
6 TraesCS5A01G052500 chr5B 94.062 1061 60 1 877 1937 72086167 72087224 0.000000e+00 1607.0
7 TraesCS5A01G052500 chr5B 87.571 177 20 2 25 200 424338801 424338626 1.380000e-48 204.0
8 TraesCS5A01G052500 chr5B 91.667 72 4 2 2131 2200 72083818 72083889 6.710000e-17 99.0
9 TraesCS5A01G052500 chr5B 100.000 28 0 0 761 788 72086123 72086150 5.000000e-03 52.8
10 TraesCS5A01G052500 chr1D 79.487 936 156 22 1016 1920 87903657 87904587 1.490000e-177 632.0
11 TraesCS5A01G052500 chr1B 78.785 938 159 25 1016 1920 142037492 142038422 7.020000e-166 593.0
12 TraesCS5A01G052500 chr1B 78.678 938 160 25 1016 1920 141844983 141845913 3.270000e-164 588.0
13 TraesCS5A01G052500 chr1B 78.038 938 166 25 1016 1920 142093752 142094682 3.310000e-154 555.0
14 TraesCS5A01G052500 chr1B 77.802 910 150 29 1041 1920 142134484 142133597 5.620000e-142 514.0
15 TraesCS5A01G052500 chr1B 88.136 177 19 2 25 200 148136162 148136337 2.970000e-50 209.0
16 TraesCS5A01G052500 chr1B 79.801 302 44 11 25 312 377074591 377074889 1.380000e-48 204.0
17 TraesCS5A01G052500 chr1B 78.387 310 47 11 15 306 63760421 63760114 1.800000e-42 183.0
18 TraesCS5A01G052500 chr1A 78.194 908 166 19 1041 1920 84796672 84795769 4.290000e-153 551.0
19 TraesCS5A01G052500 chr1A 79.805 307 40 15 15 302 43270402 43270705 1.380000e-48 204.0
20 TraesCS5A01G052500 chr3B 78.880 857 143 25 1091 1916 535705531 535704682 1.990000e-151 545.0
21 TraesCS5A01G052500 chr6B 93.122 189 13 0 2752 2940 290666149 290666337 8.030000e-71 278.0
22 TraesCS5A01G052500 chr6B 92.593 189 14 0 2752 2940 290605916 290606104 3.740000e-69 272.0
23 TraesCS5A01G052500 chr6B 91.979 187 15 0 2754 2940 290638312 290638498 2.250000e-66 263.0
24 TraesCS5A01G052500 chr3D 91.351 185 15 1 2745 2928 379823646 379823830 4.870000e-63 252.0
25 TraesCS5A01G052500 chr3D 94.375 160 9 0 2743 2902 581983441 581983600 2.260000e-61 246.0
26 TraesCS5A01G052500 chr3D 97.500 40 1 0 1477 1516 338945990 338946029 5.260000e-08 69.4
27 TraesCS5A01G052500 chr2A 93.529 170 9 2 2747 2915 688640833 688641001 4.870000e-63 252.0
28 TraesCS5A01G052500 chr7B 81.731 312 35 10 15 306 306707524 306707833 1.050000e-59 241.0
29 TraesCS5A01G052500 chr7B 87.571 177 20 2 25 200 451953056 451953231 1.380000e-48 204.0
30 TraesCS5A01G052500 chr7B 86.441 177 22 2 25 200 674764135 674763960 2.990000e-45 193.0
31 TraesCS5A01G052500 chr7A 91.860 172 11 2 2747 2915 431992735 431992906 1.360000e-58 237.0
32 TraesCS5A01G052500 chr7A 88.360 189 18 3 2744 2930 435059227 435059413 1.060000e-54 224.0
33 TraesCS5A01G052500 chr7A 80.128 312 41 12 15 306 322854 322544 2.300000e-51 213.0
34 TraesCS5A01G052500 chr6A 87.831 189 19 3 2744 2930 332289875 332290061 4.940000e-53 219.0
35 TraesCS5A01G052500 chr3A 87.571 177 20 2 25 200 514461324 514461149 1.380000e-48 204.0
36 TraesCS5A01G052500 chr3A 97.500 40 1 0 1477 1516 465821439 465821400 5.260000e-08 69.4
37 TraesCS5A01G052500 chr2D 79.677 310 41 14 15 304 630306727 630306420 1.380000e-48 204.0
38 TraesCS5A01G052500 chr7D 86.047 86 9 1 476 561 38654783 38654701 4.040000e-14 89.8
39 TraesCS5A01G052500 chr4D 97.778 45 0 1 424 467 107711514 107711470 3.140000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G052500 chr5A 47583532 47586473 2941 True 2414.0 4257 100.0000 1 2942 2 chr5A.!!$R1 2941
1 TraesCS5A01G052500 chr5D 59214342 59216121 1779 True 1269.5 2372 93.4370 733 2751 2 chr5D.!!$R1 2018
2 TraesCS5A01G052500 chr5B 72082234 72087224 4990 False 898.2 1834 94.4815 761 2200 4 chr5B.!!$F1 1439
3 TraesCS5A01G052500 chr1D 87903657 87904587 930 False 632.0 632 79.4870 1016 1920 1 chr1D.!!$F1 904
4 TraesCS5A01G052500 chr1B 142037492 142038422 930 False 593.0 593 78.7850 1016 1920 1 chr1B.!!$F2 904
5 TraesCS5A01G052500 chr1B 141844983 141845913 930 False 588.0 588 78.6780 1016 1920 1 chr1B.!!$F1 904
6 TraesCS5A01G052500 chr1B 142093752 142094682 930 False 555.0 555 78.0380 1016 1920 1 chr1B.!!$F3 904
7 TraesCS5A01G052500 chr1B 142133597 142134484 887 True 514.0 514 77.8020 1041 1920 1 chr1B.!!$R2 879
8 TraesCS5A01G052500 chr1A 84795769 84796672 903 True 551.0 551 78.1940 1041 1920 1 chr1A.!!$R1 879
9 TraesCS5A01G052500 chr3B 535704682 535705531 849 True 545.0 545 78.8800 1091 1916 1 chr3B.!!$R1 825

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
486 487 0.03496 GAGGGCCTCCTTGTTTCCTC 60.035 60.0 23.49 0.0 45.05 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1987 5843 0.239347 GACACCACAGAGCAATGCAC 59.761 55.0 8.35 0.0 0.0 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 8.687824 AAAAGGCGAAACACATTATTTATCAG 57.312 30.769 0.00 0.00 0.00 2.90
38 39 7.391148 AAGGCGAAACACATTATTTATCAGT 57.609 32.000 0.00 0.00 0.00 3.41
39 40 7.016361 AGGCGAAACACATTATTTATCAGTC 57.984 36.000 0.00 0.00 0.00 3.51
40 41 6.823689 AGGCGAAACACATTATTTATCAGTCT 59.176 34.615 0.00 0.00 0.00 3.24
41 42 7.985184 AGGCGAAACACATTATTTATCAGTCTA 59.015 33.333 0.00 0.00 0.00 2.59
42 43 8.276325 GGCGAAACACATTATTTATCAGTCTAG 58.724 37.037 0.00 0.00 0.00 2.43
43 44 7.794349 GCGAAACACATTATTTATCAGTCTAGC 59.206 37.037 0.00 0.00 0.00 3.42
44 45 9.035607 CGAAACACATTATTTATCAGTCTAGCT 57.964 33.333 0.00 0.00 0.00 3.32
48 49 9.988815 ACACATTATTTATCAGTCTAGCTTAGG 57.011 33.333 0.00 0.00 0.00 2.69
49 50 8.930760 CACATTATTTATCAGTCTAGCTTAGGC 58.069 37.037 0.00 0.00 39.06 3.93
50 51 8.651389 ACATTATTTATCAGTCTAGCTTAGGCA 58.349 33.333 0.00 0.00 41.70 4.75
51 52 9.664332 CATTATTTATCAGTCTAGCTTAGGCAT 57.336 33.333 0.00 0.00 41.70 4.40
52 53 9.664332 ATTATTTATCAGTCTAGCTTAGGCATG 57.336 33.333 0.00 0.00 41.70 4.06
53 54 5.474578 TTATCAGTCTAGCTTAGGCATGG 57.525 43.478 0.00 0.00 41.70 3.66
54 55 2.752030 TCAGTCTAGCTTAGGCATGGT 58.248 47.619 0.00 0.00 41.70 3.55
55 56 2.695666 TCAGTCTAGCTTAGGCATGGTC 59.304 50.000 0.00 0.00 41.70 4.02
56 57 2.043227 AGTCTAGCTTAGGCATGGTCC 58.957 52.381 0.00 0.00 41.70 4.46
57 58 1.762957 GTCTAGCTTAGGCATGGTCCA 59.237 52.381 0.00 0.00 41.70 4.02
58 59 2.370189 GTCTAGCTTAGGCATGGTCCAT 59.630 50.000 0.00 0.00 41.70 3.41
59 60 2.634940 TCTAGCTTAGGCATGGTCCATC 59.365 50.000 0.00 0.00 41.70 3.51
60 61 1.216064 AGCTTAGGCATGGTCCATCA 58.784 50.000 0.00 0.00 41.70 3.07
61 62 1.565759 AGCTTAGGCATGGTCCATCAA 59.434 47.619 0.00 0.00 41.70 2.57
62 63 2.025037 AGCTTAGGCATGGTCCATCAAA 60.025 45.455 0.00 0.00 41.70 2.69
63 64 2.360165 GCTTAGGCATGGTCCATCAAAG 59.640 50.000 0.00 4.76 38.54 2.77
64 65 2.057137 TAGGCATGGTCCATCAAAGC 57.943 50.000 0.00 2.14 0.00 3.51
65 66 0.040058 AGGCATGGTCCATCAAAGCA 59.960 50.000 12.56 0.00 0.00 3.91
66 67 0.896923 GGCATGGTCCATCAAAGCAA 59.103 50.000 12.56 0.00 0.00 3.91
67 68 1.483415 GGCATGGTCCATCAAAGCAAT 59.517 47.619 12.56 0.00 0.00 3.56
68 69 2.093341 GGCATGGTCCATCAAAGCAATT 60.093 45.455 12.56 0.00 0.00 2.32
69 70 3.602483 GCATGGTCCATCAAAGCAATTT 58.398 40.909 0.00 0.00 0.00 1.82
70 71 3.372822 GCATGGTCCATCAAAGCAATTTG 59.627 43.478 0.00 0.00 0.00 2.32
71 72 3.042871 TGGTCCATCAAAGCAATTTGC 57.957 42.857 13.55 13.55 45.46 3.68
100 101 2.378445 AAATATTTTGTGGTGGCGCC 57.622 45.000 22.73 22.73 37.90 6.53
101 102 1.555967 AATATTTTGTGGTGGCGCCT 58.444 45.000 29.70 6.08 38.35 5.52
102 103 1.555967 ATATTTTGTGGTGGCGCCTT 58.444 45.000 29.70 3.51 38.35 4.35
103 104 2.201921 TATTTTGTGGTGGCGCCTTA 57.798 45.000 29.70 11.09 38.35 2.69
104 105 0.601057 ATTTTGTGGTGGCGCCTTAC 59.399 50.000 29.70 22.48 38.35 2.34
121 122 6.903883 GCCTTACGAAATCAAGTCTTATGA 57.096 37.500 0.00 0.00 0.00 2.15
122 123 6.938542 GCCTTACGAAATCAAGTCTTATGAG 58.061 40.000 0.00 0.00 0.00 2.90
123 124 6.757010 GCCTTACGAAATCAAGTCTTATGAGA 59.243 38.462 0.00 0.00 0.00 3.27
174 175 8.675705 TGACATTTGAAAAGTCACTTATCTCA 57.324 30.769 11.44 0.00 37.36 3.27
175 176 9.288576 TGACATTTGAAAAGTCACTTATCTCAT 57.711 29.630 11.44 0.00 37.36 2.90
176 177 9.766277 GACATTTGAAAAGTCACTTATCTCATC 57.234 33.333 8.26 0.00 31.90 2.92
177 178 9.288576 ACATTTGAAAAGTCACTTATCTCATCA 57.711 29.630 0.00 0.00 31.90 3.07
180 181 9.506018 TTTGAAAAGTCACTTATCTCATCATGA 57.494 29.630 0.00 0.00 31.90 3.07
181 182 9.676861 TTGAAAAGTCACTTATCTCATCATGAT 57.323 29.630 1.18 1.18 31.90 2.45
234 235 9.553064 AAGTCCTTATCTTATCATGACATTGAC 57.447 33.333 0.00 0.00 0.00 3.18
235 236 8.932610 AGTCCTTATCTTATCATGACATTGACT 58.067 33.333 0.00 0.00 0.00 3.41
236 237 9.553064 GTCCTTATCTTATCATGACATTGACTT 57.447 33.333 0.00 0.00 0.00 3.01
265 266 9.649167 TTATCTCTGTCACATATGCATAATCTG 57.351 33.333 11.13 7.37 0.00 2.90
266 267 7.294017 TCTCTGTCACATATGCATAATCTGA 57.706 36.000 11.13 8.64 0.00 3.27
267 268 7.904205 TCTCTGTCACATATGCATAATCTGAT 58.096 34.615 11.13 0.00 0.00 2.90
268 269 8.373220 TCTCTGTCACATATGCATAATCTGATT 58.627 33.333 11.13 8.14 0.00 2.57
269 270 8.319143 TCTGTCACATATGCATAATCTGATTG 57.681 34.615 11.13 5.12 0.00 2.67
270 271 7.935210 TCTGTCACATATGCATAATCTGATTGT 59.065 33.333 11.13 5.79 0.00 2.71
271 272 8.454570 TGTCACATATGCATAATCTGATTGTT 57.545 30.769 11.13 0.00 0.00 2.83
272 273 8.905850 TGTCACATATGCATAATCTGATTGTTT 58.094 29.630 11.13 0.00 0.00 2.83
273 274 9.740239 GTCACATATGCATAATCTGATTGTTTT 57.260 29.630 11.13 0.00 0.00 2.43
276 277 9.754382 ACATATGCATAATCTGATTGTTTTTCC 57.246 29.630 11.13 0.00 0.00 3.13
277 278 9.199982 CATATGCATAATCTGATTGTTTTTCCC 57.800 33.333 11.13 0.00 0.00 3.97
278 279 6.855763 TGCATAATCTGATTGTTTTTCCCT 57.144 33.333 13.01 0.00 0.00 4.20
279 280 6.866480 TGCATAATCTGATTGTTTTTCCCTC 58.134 36.000 13.01 0.00 0.00 4.30
280 281 6.436847 TGCATAATCTGATTGTTTTTCCCTCA 59.563 34.615 13.01 0.00 0.00 3.86
281 282 7.124599 TGCATAATCTGATTGTTTTTCCCTCAT 59.875 33.333 13.01 0.00 0.00 2.90
282 283 7.983484 GCATAATCTGATTGTTTTTCCCTCATT 59.017 33.333 13.01 0.00 0.00 2.57
285 286 8.421249 AATCTGATTGTTTTTCCCTCATTACA 57.579 30.769 1.31 0.00 0.00 2.41
286 287 7.831691 TCTGATTGTTTTTCCCTCATTACAA 57.168 32.000 0.00 0.00 0.00 2.41
287 288 7.657336 TCTGATTGTTTTTCCCTCATTACAAC 58.343 34.615 0.00 0.00 0.00 3.32
288 289 6.442952 TGATTGTTTTTCCCTCATTACAACG 58.557 36.000 0.00 0.00 0.00 4.10
289 290 4.231718 TGTTTTTCCCTCATTACAACGC 57.768 40.909 0.00 0.00 0.00 4.84
290 291 3.632604 TGTTTTTCCCTCATTACAACGCA 59.367 39.130 0.00 0.00 0.00 5.24
291 292 4.279671 TGTTTTTCCCTCATTACAACGCAT 59.720 37.500 0.00 0.00 0.00 4.73
292 293 4.433186 TTTTCCCTCATTACAACGCATG 57.567 40.909 0.00 0.00 0.00 4.06
293 294 3.342377 TTCCCTCATTACAACGCATGA 57.658 42.857 0.00 0.00 0.00 3.07
294 295 2.905075 TCCCTCATTACAACGCATGAG 58.095 47.619 0.00 0.00 44.21 2.90
295 296 1.331756 CCCTCATTACAACGCATGAGC 59.668 52.381 0.00 0.00 43.54 4.26
296 297 2.009051 CCTCATTACAACGCATGAGCA 58.991 47.619 0.00 0.00 43.54 4.26
297 298 2.615447 CCTCATTACAACGCATGAGCAT 59.385 45.455 0.00 0.00 43.54 3.79
298 299 3.809279 CCTCATTACAACGCATGAGCATA 59.191 43.478 0.00 0.00 43.54 3.14
299 300 4.453478 CCTCATTACAACGCATGAGCATAT 59.547 41.667 0.00 0.00 43.54 1.78
300 301 5.049198 CCTCATTACAACGCATGAGCATATT 60.049 40.000 0.00 0.00 43.54 1.28
301 302 6.375945 TCATTACAACGCATGAGCATATTT 57.624 33.333 0.00 0.00 42.27 1.40
302 303 6.200808 TCATTACAACGCATGAGCATATTTG 58.799 36.000 0.00 0.00 42.27 2.32
380 381 8.532977 TTCTTGAAAGAACCAACAAAGAAAAG 57.467 30.769 1.31 0.00 39.95 2.27
381 382 7.891561 TCTTGAAAGAACCAACAAAGAAAAGA 58.108 30.769 0.00 0.00 30.73 2.52
382 383 8.364142 TCTTGAAAGAACCAACAAAGAAAAGAA 58.636 29.630 0.00 0.00 30.73 2.52
383 384 7.883229 TGAAAGAACCAACAAAGAAAAGAAC 57.117 32.000 0.00 0.00 0.00 3.01
384 385 6.871492 TGAAAGAACCAACAAAGAAAAGAACC 59.129 34.615 0.00 0.00 0.00 3.62
385 386 6.605471 AAGAACCAACAAAGAAAAGAACCT 57.395 33.333 0.00 0.00 0.00 3.50
386 387 7.712204 AAGAACCAACAAAGAAAAGAACCTA 57.288 32.000 0.00 0.00 0.00 3.08
387 388 7.096884 AGAACCAACAAAGAAAAGAACCTAC 57.903 36.000 0.00 0.00 0.00 3.18
388 389 5.847111 ACCAACAAAGAAAAGAACCTACC 57.153 39.130 0.00 0.00 0.00 3.18
389 390 5.265989 ACCAACAAAGAAAAGAACCTACCA 58.734 37.500 0.00 0.00 0.00 3.25
390 391 5.717654 ACCAACAAAGAAAAGAACCTACCAA 59.282 36.000 0.00 0.00 0.00 3.67
391 392 6.211785 ACCAACAAAGAAAAGAACCTACCAAA 59.788 34.615 0.00 0.00 0.00 3.28
392 393 7.100409 CCAACAAAGAAAAGAACCTACCAAAA 58.900 34.615 0.00 0.00 0.00 2.44
393 394 7.768582 CCAACAAAGAAAAGAACCTACCAAAAT 59.231 33.333 0.00 0.00 0.00 1.82
394 395 9.810545 CAACAAAGAAAAGAACCTACCAAAATA 57.189 29.630 0.00 0.00 0.00 1.40
396 397 9.416284 ACAAAGAAAAGAACCTACCAAAATAGA 57.584 29.630 0.00 0.00 0.00 1.98
397 398 9.899226 CAAAGAAAAGAACCTACCAAAATAGAG 57.101 33.333 0.00 0.00 0.00 2.43
398 399 7.689446 AGAAAAGAACCTACCAAAATAGAGC 57.311 36.000 0.00 0.00 0.00 4.09
399 400 7.231467 AGAAAAGAACCTACCAAAATAGAGCA 58.769 34.615 0.00 0.00 0.00 4.26
400 401 7.724061 AGAAAAGAACCTACCAAAATAGAGCAA 59.276 33.333 0.00 0.00 0.00 3.91
401 402 7.833285 AAAGAACCTACCAAAATAGAGCAAA 57.167 32.000 0.00 0.00 0.00 3.68
402 403 7.833285 AAGAACCTACCAAAATAGAGCAAAA 57.167 32.000 0.00 0.00 0.00 2.44
403 404 7.833285 AGAACCTACCAAAATAGAGCAAAAA 57.167 32.000 0.00 0.00 0.00 1.94
404 405 8.422577 AGAACCTACCAAAATAGAGCAAAAAT 57.577 30.769 0.00 0.00 0.00 1.82
405 406 8.306761 AGAACCTACCAAAATAGAGCAAAAATG 58.693 33.333 0.00 0.00 0.00 2.32
406 407 6.398095 ACCTACCAAAATAGAGCAAAAATGC 58.602 36.000 0.00 0.00 0.00 3.56
408 409 7.396055 ACCTACCAAAATAGAGCAAAAATGCTA 59.604 33.333 2.89 0.00 46.36 3.49
409 410 7.917505 CCTACCAAAATAGAGCAAAAATGCTAG 59.082 37.037 2.89 0.00 46.36 3.42
410 411 7.466746 ACCAAAATAGAGCAAAAATGCTAGA 57.533 32.000 2.89 0.00 46.36 2.43
411 412 7.315890 ACCAAAATAGAGCAAAAATGCTAGAC 58.684 34.615 2.89 0.00 46.36 2.59
412 413 6.753744 CCAAAATAGAGCAAAAATGCTAGACC 59.246 38.462 2.89 0.00 46.36 3.85
413 414 7.363268 CCAAAATAGAGCAAAAATGCTAGACCT 60.363 37.037 2.89 0.00 46.36 3.85
414 415 6.690194 AATAGAGCAAAAATGCTAGACCTG 57.310 37.500 2.89 0.00 46.36 4.00
415 416 2.751806 AGAGCAAAAATGCTAGACCTGC 59.248 45.455 2.89 0.00 46.36 4.85
416 417 1.470098 AGCAAAAATGCTAGACCTGCG 59.530 47.619 0.67 0.00 44.28 5.18
417 418 1.468054 GCAAAAATGCTAGACCTGCGG 60.468 52.381 0.00 0.00 0.00 5.69
418 419 2.083774 CAAAAATGCTAGACCTGCGGA 58.916 47.619 0.00 0.00 0.00 5.54
419 420 1.739067 AAAATGCTAGACCTGCGGAC 58.261 50.000 0.00 0.00 0.00 4.79
420 421 0.460284 AAATGCTAGACCTGCGGACG 60.460 55.000 0.00 0.00 0.00 4.79
421 422 1.320344 AATGCTAGACCTGCGGACGA 61.320 55.000 0.00 0.00 0.00 4.20
422 423 1.109920 ATGCTAGACCTGCGGACGAT 61.110 55.000 0.00 0.00 0.00 3.73
423 424 1.008309 GCTAGACCTGCGGACGATC 60.008 63.158 0.00 0.00 0.00 3.69
424 425 1.448922 GCTAGACCTGCGGACGATCT 61.449 60.000 0.00 0.00 0.00 2.75
425 426 1.880271 CTAGACCTGCGGACGATCTA 58.120 55.000 0.00 0.00 0.00 1.98
426 427 1.532007 CTAGACCTGCGGACGATCTAC 59.468 57.143 0.00 0.00 0.00 2.59
456 457 8.471361 AGTTACGTAACTTGCCTTAACTTATC 57.529 34.615 30.57 4.11 43.57 1.75
457 458 8.309656 AGTTACGTAACTTGCCTTAACTTATCT 58.690 33.333 30.57 7.05 43.57 1.98
458 459 8.590470 GTTACGTAACTTGCCTTAACTTATCTC 58.410 37.037 27.22 0.00 33.52 2.75
459 460 6.932947 ACGTAACTTGCCTTAACTTATCTCT 58.067 36.000 0.00 0.00 0.00 3.10
460 461 7.384477 ACGTAACTTGCCTTAACTTATCTCTT 58.616 34.615 0.00 0.00 0.00 2.85
461 462 7.544915 ACGTAACTTGCCTTAACTTATCTCTTC 59.455 37.037 0.00 0.00 0.00 2.87
462 463 6.969828 AACTTGCCTTAACTTATCTCTTCG 57.030 37.500 0.00 0.00 0.00 3.79
463 464 4.870991 ACTTGCCTTAACTTATCTCTTCGC 59.129 41.667 0.00 0.00 0.00 4.70
464 465 3.793559 TGCCTTAACTTATCTCTTCGCC 58.206 45.455 0.00 0.00 0.00 5.54
465 466 3.132160 GCCTTAACTTATCTCTTCGCCC 58.868 50.000 0.00 0.00 0.00 6.13
466 467 3.729966 CCTTAACTTATCTCTTCGCCCC 58.270 50.000 0.00 0.00 0.00 5.80
467 468 3.381949 CTTAACTTATCTCTTCGCCCCG 58.618 50.000 0.00 0.00 0.00 5.73
468 469 1.481871 AACTTATCTCTTCGCCCCGA 58.518 50.000 0.00 0.00 0.00 5.14
469 470 1.033574 ACTTATCTCTTCGCCCCGAG 58.966 55.000 0.00 0.00 37.14 4.63
470 471 0.315568 CTTATCTCTTCGCCCCGAGG 59.684 60.000 0.00 0.00 37.14 4.63
481 482 3.330720 CCCGAGGGCCTCCTTGTT 61.331 66.667 27.36 0.00 45.05 2.83
482 483 2.757077 CCGAGGGCCTCCTTGTTT 59.243 61.111 27.36 0.00 45.05 2.83
483 484 1.377333 CCGAGGGCCTCCTTGTTTC 60.377 63.158 27.36 1.16 45.05 2.78
484 485 1.377333 CGAGGGCCTCCTTGTTTCC 60.377 63.158 27.36 0.03 45.05 3.13
485 486 1.842381 CGAGGGCCTCCTTGTTTCCT 61.842 60.000 27.36 0.00 45.05 3.36
486 487 0.034960 GAGGGCCTCCTTGTTTCCTC 60.035 60.000 23.49 0.00 45.05 3.71
487 488 0.476611 AGGGCCTCCTTGTTTCCTCT 60.477 55.000 0.00 0.00 41.56 3.69
488 489 1.203440 AGGGCCTCCTTGTTTCCTCTA 60.203 52.381 0.00 0.00 41.56 2.43
489 490 1.633945 GGGCCTCCTTGTTTCCTCTAA 59.366 52.381 0.84 0.00 0.00 2.10
490 491 2.618302 GGGCCTCCTTGTTTCCTCTAAC 60.618 54.545 0.84 0.00 0.00 2.34
491 492 2.618302 GGCCTCCTTGTTTCCTCTAACC 60.618 54.545 0.00 0.00 0.00 2.85
492 493 2.039879 GCCTCCTTGTTTCCTCTAACCA 59.960 50.000 0.00 0.00 0.00 3.67
493 494 3.497942 GCCTCCTTGTTTCCTCTAACCAA 60.498 47.826 0.00 0.00 0.00 3.67
494 495 4.725490 CCTCCTTGTTTCCTCTAACCAAA 58.275 43.478 0.00 0.00 0.00 3.28
495 496 5.137551 CCTCCTTGTTTCCTCTAACCAAAA 58.862 41.667 0.00 0.00 0.00 2.44
496 497 5.009710 CCTCCTTGTTTCCTCTAACCAAAAC 59.990 44.000 0.00 0.00 33.32 2.43
497 498 5.511363 TCCTTGTTTCCTCTAACCAAAACA 58.489 37.500 0.00 0.00 39.21 2.83
498 499 6.133356 TCCTTGTTTCCTCTAACCAAAACAT 58.867 36.000 0.00 0.00 40.25 2.71
499 500 6.040391 TCCTTGTTTCCTCTAACCAAAACATG 59.960 38.462 0.00 0.00 40.25 3.21
500 501 5.195001 TGTTTCCTCTAACCAAAACATGC 57.805 39.130 0.00 0.00 36.86 4.06
501 502 4.038642 TGTTTCCTCTAACCAAAACATGCC 59.961 41.667 0.00 0.00 36.86 4.40
502 503 3.517296 TCCTCTAACCAAAACATGCCA 57.483 42.857 0.00 0.00 0.00 4.92
503 504 3.153919 TCCTCTAACCAAAACATGCCAC 58.846 45.455 0.00 0.00 0.00 5.01
504 505 2.231235 CCTCTAACCAAAACATGCCACC 59.769 50.000 0.00 0.00 0.00 4.61
505 506 3.157087 CTCTAACCAAAACATGCCACCT 58.843 45.455 0.00 0.00 0.00 4.00
506 507 4.331968 CTCTAACCAAAACATGCCACCTA 58.668 43.478 0.00 0.00 0.00 3.08
507 508 4.730966 TCTAACCAAAACATGCCACCTAA 58.269 39.130 0.00 0.00 0.00 2.69
508 509 5.329399 TCTAACCAAAACATGCCACCTAAT 58.671 37.500 0.00 0.00 0.00 1.73
509 510 4.972751 AACCAAAACATGCCACCTAATT 57.027 36.364 0.00 0.00 0.00 1.40
510 511 6.948886 TCTAACCAAAACATGCCACCTAATTA 59.051 34.615 0.00 0.00 0.00 1.40
511 512 5.659440 ACCAAAACATGCCACCTAATTAG 57.341 39.130 5.43 5.43 0.00 1.73
512 513 5.083821 ACCAAAACATGCCACCTAATTAGT 58.916 37.500 11.50 0.00 0.00 2.24
513 514 5.542251 ACCAAAACATGCCACCTAATTAGTT 59.458 36.000 11.50 0.00 0.00 2.24
514 515 6.722129 ACCAAAACATGCCACCTAATTAGTTA 59.278 34.615 11.50 0.00 0.00 2.24
515 516 7.398904 ACCAAAACATGCCACCTAATTAGTTAT 59.601 33.333 11.50 0.00 0.00 1.89
516 517 7.706179 CCAAAACATGCCACCTAATTAGTTATG 59.294 37.037 11.50 9.79 0.00 1.90
517 518 7.954666 AAACATGCCACCTAATTAGTTATGT 57.045 32.000 11.50 10.31 0.00 2.29
518 519 7.954666 AACATGCCACCTAATTAGTTATGTT 57.045 32.000 11.50 14.46 33.03 2.71
519 520 9.469097 AAACATGCCACCTAATTAGTTATGTTA 57.531 29.630 19.16 7.13 35.80 2.41
520 521 9.469097 AACATGCCACCTAATTAGTTATGTTAA 57.531 29.630 18.28 4.41 35.28 2.01
521 522 9.640952 ACATGCCACCTAATTAGTTATGTTAAT 57.359 29.630 11.50 0.00 0.00 1.40
553 554 9.596308 TGTAGAAATCCTTATGTAGGTATAGCA 57.404 33.333 4.48 0.00 45.03 3.49
560 561 9.769677 ATCCTTATGTAGGTATAGCATTACTGA 57.230 33.333 4.48 0.00 45.03 3.41
561 562 9.596308 TCCTTATGTAGGTATAGCATTACTGAA 57.404 33.333 4.48 0.00 45.03 3.02
566 567 8.902540 TGTAGGTATAGCATTACTGAAAATGG 57.097 34.615 4.48 0.00 37.34 3.16
567 568 8.710239 TGTAGGTATAGCATTACTGAAAATGGA 58.290 33.333 4.48 0.00 37.34 3.41
568 569 9.555727 GTAGGTATAGCATTACTGAAAATGGAA 57.444 33.333 4.48 0.00 37.34 3.53
569 570 8.451908 AGGTATAGCATTACTGAAAATGGAAC 57.548 34.615 4.48 0.00 37.34 3.62
570 571 7.226720 AGGTATAGCATTACTGAAAATGGAACG 59.773 37.037 4.48 0.00 37.34 3.95
571 572 7.225931 GGTATAGCATTACTGAAAATGGAACGA 59.774 37.037 0.00 0.00 37.34 3.85
572 573 5.551760 AGCATTACTGAAAATGGAACGAG 57.448 39.130 0.00 0.00 37.34 4.18
573 574 4.098416 GCATTACTGAAAATGGAACGAGC 58.902 43.478 0.00 0.00 37.34 5.03
574 575 4.334443 CATTACTGAAAATGGAACGAGCG 58.666 43.478 0.00 0.00 33.95 5.03
575 576 1.156736 ACTGAAAATGGAACGAGCGG 58.843 50.000 0.00 0.00 0.00 5.52
576 577 1.270625 ACTGAAAATGGAACGAGCGGA 60.271 47.619 0.00 0.00 0.00 5.54
577 578 1.804151 CTGAAAATGGAACGAGCGGAA 59.196 47.619 0.00 0.00 0.00 4.30
578 579 2.222886 TGAAAATGGAACGAGCGGAAA 58.777 42.857 0.00 0.00 0.00 3.13
579 580 2.817258 TGAAAATGGAACGAGCGGAAAT 59.183 40.909 0.00 0.00 0.00 2.17
580 581 4.004314 TGAAAATGGAACGAGCGGAAATA 58.996 39.130 0.00 0.00 0.00 1.40
581 582 4.094294 TGAAAATGGAACGAGCGGAAATAG 59.906 41.667 0.00 0.00 0.00 1.73
582 583 2.240493 ATGGAACGAGCGGAAATAGG 57.760 50.000 0.00 0.00 0.00 2.57
583 584 0.177141 TGGAACGAGCGGAAATAGGG 59.823 55.000 0.00 0.00 0.00 3.53
584 585 0.462789 GGAACGAGCGGAAATAGGGA 59.537 55.000 0.00 0.00 0.00 4.20
585 586 1.134610 GGAACGAGCGGAAATAGGGAA 60.135 52.381 0.00 0.00 0.00 3.97
586 587 2.624636 GAACGAGCGGAAATAGGGAAA 58.375 47.619 0.00 0.00 0.00 3.13
587 588 2.019948 ACGAGCGGAAATAGGGAAAC 57.980 50.000 0.00 0.00 0.00 2.78
588 589 1.276989 ACGAGCGGAAATAGGGAAACA 59.723 47.619 0.00 0.00 0.00 2.83
589 590 2.289819 ACGAGCGGAAATAGGGAAACAA 60.290 45.455 0.00 0.00 0.00 2.83
590 591 2.351726 CGAGCGGAAATAGGGAAACAAG 59.648 50.000 0.00 0.00 0.00 3.16
591 592 3.606687 GAGCGGAAATAGGGAAACAAGA 58.393 45.455 0.00 0.00 0.00 3.02
592 593 4.007659 GAGCGGAAATAGGGAAACAAGAA 58.992 43.478 0.00 0.00 0.00 2.52
593 594 4.403734 AGCGGAAATAGGGAAACAAGAAA 58.596 39.130 0.00 0.00 0.00 2.52
594 595 4.830600 AGCGGAAATAGGGAAACAAGAAAA 59.169 37.500 0.00 0.00 0.00 2.29
595 596 5.048013 AGCGGAAATAGGGAAACAAGAAAAG 60.048 40.000 0.00 0.00 0.00 2.27
596 597 5.709966 CGGAAATAGGGAAACAAGAAAAGG 58.290 41.667 0.00 0.00 0.00 3.11
597 598 5.336451 CGGAAATAGGGAAACAAGAAAAGGG 60.336 44.000 0.00 0.00 0.00 3.95
598 599 5.046591 GGAAATAGGGAAACAAGAAAAGGGG 60.047 44.000 0.00 0.00 0.00 4.79
599 600 5.348259 AATAGGGAAACAAGAAAAGGGGA 57.652 39.130 0.00 0.00 0.00 4.81
600 601 3.699025 AGGGAAACAAGAAAAGGGGAA 57.301 42.857 0.00 0.00 0.00 3.97
601 602 4.213531 AGGGAAACAAGAAAAGGGGAAT 57.786 40.909 0.00 0.00 0.00 3.01
602 603 3.903714 AGGGAAACAAGAAAAGGGGAATG 59.096 43.478 0.00 0.00 0.00 2.67
603 604 3.007940 GGGAAACAAGAAAAGGGGAATGG 59.992 47.826 0.00 0.00 0.00 3.16
604 605 3.901222 GGAAACAAGAAAAGGGGAATGGA 59.099 43.478 0.00 0.00 0.00 3.41
605 606 4.021104 GGAAACAAGAAAAGGGGAATGGAG 60.021 45.833 0.00 0.00 0.00 3.86
606 607 3.175438 ACAAGAAAAGGGGAATGGAGG 57.825 47.619 0.00 0.00 0.00 4.30
607 608 2.450886 ACAAGAAAAGGGGAATGGAGGT 59.549 45.455 0.00 0.00 0.00 3.85
608 609 2.827921 CAAGAAAAGGGGAATGGAGGTG 59.172 50.000 0.00 0.00 0.00 4.00
609 610 1.186200 GAAAAGGGGAATGGAGGTGC 58.814 55.000 0.00 0.00 0.00 5.01
610 611 0.611896 AAAAGGGGAATGGAGGTGCG 60.612 55.000 0.00 0.00 0.00 5.34
611 612 1.497309 AAAGGGGAATGGAGGTGCGA 61.497 55.000 0.00 0.00 0.00 5.10
612 613 1.497309 AAGGGGAATGGAGGTGCGAA 61.497 55.000 0.00 0.00 0.00 4.70
613 614 1.749258 GGGGAATGGAGGTGCGAAC 60.749 63.158 0.00 0.00 0.00 3.95
614 615 2.106683 GGGAATGGAGGTGCGAACG 61.107 63.158 0.00 0.00 0.00 3.95
615 616 2.106683 GGAATGGAGGTGCGAACGG 61.107 63.158 0.00 0.00 0.00 4.44
616 617 1.079405 GAATGGAGGTGCGAACGGA 60.079 57.895 0.00 0.00 0.00 4.69
617 618 0.672401 GAATGGAGGTGCGAACGGAA 60.672 55.000 0.00 0.00 0.00 4.30
618 619 0.250553 AATGGAGGTGCGAACGGAAA 60.251 50.000 0.00 0.00 0.00 3.13
619 620 0.673644 ATGGAGGTGCGAACGGAAAG 60.674 55.000 0.00 0.00 0.00 2.62
620 621 1.005394 GGAGGTGCGAACGGAAAGA 60.005 57.895 0.00 0.00 0.00 2.52
621 622 0.601841 GGAGGTGCGAACGGAAAGAA 60.602 55.000 0.00 0.00 0.00 2.52
622 623 0.511653 GAGGTGCGAACGGAAAGAAC 59.488 55.000 0.00 0.00 0.00 3.01
623 624 0.883370 AGGTGCGAACGGAAAGAACC 60.883 55.000 0.00 0.00 0.00 3.62
634 635 2.647337 GGAAAGAACCGAACGAAAAGC 58.353 47.619 0.00 0.00 0.00 3.51
635 636 2.032426 GGAAAGAACCGAACGAAAAGCA 59.968 45.455 0.00 0.00 0.00 3.91
636 637 3.289076 GAAAGAACCGAACGAAAAGCAG 58.711 45.455 0.00 0.00 0.00 4.24
637 638 1.226746 AGAACCGAACGAAAAGCAGG 58.773 50.000 0.00 0.00 0.00 4.85
638 639 0.237498 GAACCGAACGAAAAGCAGGG 59.763 55.000 0.00 0.00 0.00 4.45
639 640 1.792118 AACCGAACGAAAAGCAGGGC 61.792 55.000 0.00 0.00 0.00 5.19
640 641 2.561373 CGAACGAAAAGCAGGGCC 59.439 61.111 0.00 0.00 0.00 5.80
641 642 2.561373 GAACGAAAAGCAGGGCCG 59.439 61.111 0.00 0.00 0.00 6.13
642 643 1.964373 GAACGAAAAGCAGGGCCGA 60.964 57.895 0.00 0.00 0.00 5.54
643 644 1.512156 GAACGAAAAGCAGGGCCGAA 61.512 55.000 0.00 0.00 0.00 4.30
644 645 1.515521 AACGAAAAGCAGGGCCGAAG 61.516 55.000 0.00 0.00 0.00 3.79
645 646 1.671054 CGAAAAGCAGGGCCGAAGA 60.671 57.895 0.00 0.00 0.00 2.87
646 647 1.234615 CGAAAAGCAGGGCCGAAGAA 61.235 55.000 0.00 0.00 0.00 2.52
647 648 0.958822 GAAAAGCAGGGCCGAAGAAA 59.041 50.000 0.00 0.00 0.00 2.52
648 649 1.339929 GAAAAGCAGGGCCGAAGAAAA 59.660 47.619 0.00 0.00 0.00 2.29
649 650 0.961753 AAAGCAGGGCCGAAGAAAAG 59.038 50.000 0.00 0.00 0.00 2.27
650 651 0.110486 AAGCAGGGCCGAAGAAAAGA 59.890 50.000 0.00 0.00 0.00 2.52
651 652 0.110486 AGCAGGGCCGAAGAAAAGAA 59.890 50.000 0.00 0.00 0.00 2.52
652 653 0.523519 GCAGGGCCGAAGAAAAGAAG 59.476 55.000 0.00 0.00 0.00 2.85
653 654 1.882352 GCAGGGCCGAAGAAAAGAAGA 60.882 52.381 0.00 0.00 0.00 2.87
654 655 2.504367 CAGGGCCGAAGAAAAGAAGAA 58.496 47.619 0.00 0.00 0.00 2.52
655 656 2.884639 CAGGGCCGAAGAAAAGAAGAAA 59.115 45.455 0.00 0.00 0.00 2.52
656 657 3.317993 CAGGGCCGAAGAAAAGAAGAAAA 59.682 43.478 0.00 0.00 0.00 2.29
657 658 3.958147 AGGGCCGAAGAAAAGAAGAAAAA 59.042 39.130 0.00 0.00 0.00 1.94
685 686 2.461903 GGAACGAACTCGAAGCTATCC 58.538 52.381 6.05 0.67 43.02 2.59
686 687 2.099427 GGAACGAACTCGAAGCTATCCT 59.901 50.000 6.05 0.00 43.02 3.24
687 688 3.314635 GGAACGAACTCGAAGCTATCCTA 59.685 47.826 6.05 0.00 43.02 2.94
688 689 4.023021 GGAACGAACTCGAAGCTATCCTAT 60.023 45.833 6.05 0.00 43.02 2.57
689 690 4.491234 ACGAACTCGAAGCTATCCTATG 57.509 45.455 6.05 0.00 43.02 2.23
690 691 3.253677 ACGAACTCGAAGCTATCCTATGG 59.746 47.826 6.05 0.00 43.02 2.74
691 692 3.366476 CGAACTCGAAGCTATCCTATGGG 60.366 52.174 0.00 0.00 43.02 4.00
692 693 1.896465 ACTCGAAGCTATCCTATGGGC 59.104 52.381 0.00 0.00 0.00 5.36
693 694 1.205893 CTCGAAGCTATCCTATGGGCC 59.794 57.143 0.00 0.00 0.00 5.80
694 695 0.250513 CGAAGCTATCCTATGGGCCC 59.749 60.000 17.59 17.59 0.00 5.80
695 696 0.621082 GAAGCTATCCTATGGGCCCC 59.379 60.000 22.27 0.85 0.00 5.80
696 697 0.846870 AAGCTATCCTATGGGCCCCC 60.847 60.000 22.27 0.00 0.00 5.40
705 706 3.863685 TGGGCCCCCATACACATT 58.136 55.556 22.27 0.00 41.89 2.71
706 707 1.618030 TGGGCCCCCATACACATTC 59.382 57.895 22.27 0.00 41.89 2.67
707 708 1.528309 GGGCCCCCATACACATTCG 60.528 63.158 12.23 0.00 35.81 3.34
708 709 2.193536 GGCCCCCATACACATTCGC 61.194 63.158 0.00 0.00 0.00 4.70
709 710 1.152963 GCCCCCATACACATTCGCT 60.153 57.895 0.00 0.00 0.00 4.93
710 711 1.166531 GCCCCCATACACATTCGCTC 61.167 60.000 0.00 0.00 0.00 5.03
711 712 0.469917 CCCCCATACACATTCGCTCT 59.530 55.000 0.00 0.00 0.00 4.09
712 713 1.586422 CCCCATACACATTCGCTCTG 58.414 55.000 0.00 0.00 0.00 3.35
713 714 1.586422 CCCATACACATTCGCTCTGG 58.414 55.000 0.00 0.00 0.00 3.86
714 715 1.586422 CCATACACATTCGCTCTGGG 58.414 55.000 0.00 0.00 0.00 4.45
715 716 0.940126 CATACACATTCGCTCTGGGC 59.060 55.000 0.00 0.00 37.64 5.36
868 875 6.435904 CCTCCTAGCTGCCTATATATACATCC 59.564 46.154 0.00 0.00 0.00 3.51
887 894 3.813443 TCCTAGTACATCCTCACGTACC 58.187 50.000 0.00 0.00 39.03 3.34
1125 1138 0.175073 GGTACTCGTTCGGGAGCATT 59.825 55.000 0.00 0.00 37.57 3.56
1759 5613 2.969238 GCATGGTCGCCGAGATGG 60.969 66.667 7.84 0.00 42.50 3.51
1801 5655 1.972660 CTCCACGGGGAAGATGGACC 61.973 65.000 8.34 0.00 44.38 4.46
1873 5727 2.046700 TTGCATTCGACCCCGACC 60.047 61.111 0.00 0.00 45.50 4.79
1923 5777 2.542824 CCATCGGTGGTTCAACAACAAC 60.543 50.000 6.53 0.00 40.83 3.32
1973 5829 8.594881 AGTTAATTAGCTTCATTAGACCGATG 57.405 34.615 0.00 0.00 0.00 3.84
1987 5843 2.346803 ACCGATGGACGAAATGTTCAG 58.653 47.619 0.00 0.00 40.19 3.02
2001 5857 1.605232 TGTTCAGTGCATTGCTCTGTG 59.395 47.619 29.62 14.43 46.21 3.66
2023 5879 4.288626 TGGTGTCCCAGAGTTAGCTTAATT 59.711 41.667 0.00 0.00 35.17 1.40
2082 5938 7.883229 AAAGGTTTGGATAAATTTAAGCGTG 57.117 32.000 1.21 0.00 0.00 5.34
2090 5946 5.912955 GGATAAATTTAAGCGTGTATGCACC 59.087 40.000 8.45 1.58 42.39 5.01
2134 5990 2.281692 TGCTGTTGTGCGCATCCT 60.282 55.556 15.91 0.00 35.36 3.24
2135 5991 2.177531 GCTGTTGTGCGCATCCTG 59.822 61.111 15.91 9.76 0.00 3.86
2144 6000 1.945394 GTGCGCATCCTGATTTGAGAT 59.055 47.619 15.91 0.00 0.00 2.75
2208 6064 5.808042 ATGCTGCAATGTACAGAAAGTAG 57.192 39.130 6.36 1.43 37.32 2.57
2660 6518 4.837860 TGGCATGTCAAAAATACTCCCTTT 59.162 37.500 0.00 0.00 0.00 3.11
2666 6524 4.076394 TCAAAAATACTCCCTTTGTCCGG 58.924 43.478 0.00 0.00 32.92 5.14
2678 6536 4.438200 CCCTTTGTCCGGAATTATTTGTCG 60.438 45.833 5.23 0.00 0.00 4.35
2680 6538 1.661617 TGTCCGGAATTATTTGTCGCG 59.338 47.619 5.23 0.00 0.00 5.87
2684 6542 2.289547 CCGGAATTATTTGTCGCGGAAT 59.710 45.455 6.13 7.37 32.57 3.01
2688 6546 5.277154 CGGAATTATTTGTCGCGGAATTAGT 60.277 40.000 6.13 0.00 0.00 2.24
2756 6614 4.882671 CAATTCAGTTGTATTCCCTCCG 57.117 45.455 0.00 0.00 33.01 4.63
2757 6615 4.261801 CAATTCAGTTGTATTCCCTCCGT 58.738 43.478 0.00 0.00 33.01 4.69
2758 6616 4.569719 ATTCAGTTGTATTCCCTCCGTT 57.430 40.909 0.00 0.00 0.00 4.44
2759 6617 4.360951 TTCAGTTGTATTCCCTCCGTTT 57.639 40.909 0.00 0.00 0.00 3.60
2760 6618 3.934068 TCAGTTGTATTCCCTCCGTTTC 58.066 45.455 0.00 0.00 0.00 2.78
2761 6619 3.581332 TCAGTTGTATTCCCTCCGTTTCT 59.419 43.478 0.00 0.00 0.00 2.52
2762 6620 4.773674 TCAGTTGTATTCCCTCCGTTTCTA 59.226 41.667 0.00 0.00 0.00 2.10
2763 6621 5.246656 TCAGTTGTATTCCCTCCGTTTCTAA 59.753 40.000 0.00 0.00 0.00 2.10
2764 6622 5.935789 CAGTTGTATTCCCTCCGTTTCTAAA 59.064 40.000 0.00 0.00 0.00 1.85
2765 6623 6.598064 CAGTTGTATTCCCTCCGTTTCTAAAT 59.402 38.462 0.00 0.00 0.00 1.40
2766 6624 7.767198 CAGTTGTATTCCCTCCGTTTCTAAATA 59.233 37.037 0.00 0.00 0.00 1.40
2767 6625 8.491958 AGTTGTATTCCCTCCGTTTCTAAATAT 58.508 33.333 0.00 0.00 0.00 1.28
2768 6626 9.117183 GTTGTATTCCCTCCGTTTCTAAATATT 57.883 33.333 0.00 0.00 0.00 1.28
2769 6627 9.689501 TTGTATTCCCTCCGTTTCTAAATATTT 57.310 29.630 5.89 5.89 0.00 1.40
2770 6628 9.116067 TGTATTCCCTCCGTTTCTAAATATTTG 57.884 33.333 11.05 1.65 0.00 2.32
2771 6629 9.117183 GTATTCCCTCCGTTTCTAAATATTTGT 57.883 33.333 11.05 0.00 0.00 2.83
2772 6630 7.619964 TTCCCTCCGTTTCTAAATATTTGTC 57.380 36.000 11.05 0.00 0.00 3.18
2773 6631 6.954232 TCCCTCCGTTTCTAAATATTTGTCT 58.046 36.000 11.05 0.00 0.00 3.41
2774 6632 7.399634 TCCCTCCGTTTCTAAATATTTGTCTT 58.600 34.615 11.05 0.00 0.00 3.01
2775 6633 7.886446 TCCCTCCGTTTCTAAATATTTGTCTTT 59.114 33.333 11.05 0.00 0.00 2.52
2776 6634 8.182227 CCCTCCGTTTCTAAATATTTGTCTTTC 58.818 37.037 11.05 0.00 0.00 2.62
2777 6635 8.947115 CCTCCGTTTCTAAATATTTGTCTTTCT 58.053 33.333 11.05 0.00 0.00 2.52
2795 6653 9.559732 TGTCTTTCTAGAGATTTCAACAAATGA 57.440 29.630 0.00 0.00 31.94 2.57
2796 6654 9.818796 GTCTTTCTAGAGATTTCAACAAATGAC 57.181 33.333 0.00 0.00 37.92 3.06
2797 6655 9.784531 TCTTTCTAGAGATTTCAACAAATGACT 57.215 29.630 0.00 0.00 37.92 3.41
2808 6666 7.709269 TTCAACAAATGACTATATACGGAGC 57.291 36.000 0.00 0.00 37.92 4.70
2809 6667 6.811954 TCAACAAATGACTATATACGGAGCA 58.188 36.000 0.00 0.00 31.50 4.26
2810 6668 7.269316 TCAACAAATGACTATATACGGAGCAA 58.731 34.615 0.00 0.00 31.50 3.91
2811 6669 7.766738 TCAACAAATGACTATATACGGAGCAAA 59.233 33.333 0.00 0.00 31.50 3.68
2812 6670 8.394877 CAACAAATGACTATATACGGAGCAAAA 58.605 33.333 0.00 0.00 0.00 2.44
2813 6671 8.677148 ACAAATGACTATATACGGAGCAAAAT 57.323 30.769 0.00 0.00 0.00 1.82
2814 6672 8.559536 ACAAATGACTATATACGGAGCAAAATG 58.440 33.333 0.00 0.00 0.00 2.32
2815 6673 8.773645 CAAATGACTATATACGGAGCAAAATGA 58.226 33.333 0.00 0.00 0.00 2.57
2816 6674 8.539770 AATGACTATATACGGAGCAAAATGAG 57.460 34.615 0.00 0.00 0.00 2.90
2817 6675 7.050970 TGACTATATACGGAGCAAAATGAGT 57.949 36.000 0.00 0.00 0.00 3.41
2818 6676 6.923508 TGACTATATACGGAGCAAAATGAGTG 59.076 38.462 0.00 0.00 0.00 3.51
2819 6677 7.050970 ACTATATACGGAGCAAAATGAGTGA 57.949 36.000 0.00 0.00 0.00 3.41
2820 6678 7.497595 ACTATATACGGAGCAAAATGAGTGAA 58.502 34.615 0.00 0.00 0.00 3.18
2821 6679 8.150945 ACTATATACGGAGCAAAATGAGTGAAT 58.849 33.333 0.00 0.00 0.00 2.57
2822 6680 5.741388 ATACGGAGCAAAATGAGTGAATC 57.259 39.130 0.00 0.00 0.00 2.52
2823 6681 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
2824 6682 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
2825 6683 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
2826 6684 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
2827 6685 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
2865 6723 8.957466 TCTATATACATCTGTATGTGGTAGTGC 58.043 37.037 12.10 0.00 45.99 4.40
2866 6724 5.869649 ATACATCTGTATGTGGTAGTGCA 57.130 39.130 2.10 0.00 45.99 4.57
2867 6725 4.760530 ACATCTGTATGTGGTAGTGCAT 57.239 40.909 0.00 0.00 44.79 3.96
2868 6726 5.102953 ACATCTGTATGTGGTAGTGCATT 57.897 39.130 0.00 0.00 44.79 3.56
2869 6727 5.500234 ACATCTGTATGTGGTAGTGCATTT 58.500 37.500 0.00 0.00 44.79 2.32
2870 6728 5.355071 ACATCTGTATGTGGTAGTGCATTTG 59.645 40.000 0.00 0.00 44.79 2.32
2871 6729 5.159273 TCTGTATGTGGTAGTGCATTTGA 57.841 39.130 0.00 0.00 0.00 2.69
2872 6730 5.555966 TCTGTATGTGGTAGTGCATTTGAA 58.444 37.500 0.00 0.00 0.00 2.69
2873 6731 6.000840 TCTGTATGTGGTAGTGCATTTGAAA 58.999 36.000 0.00 0.00 0.00 2.69
2874 6732 6.658816 TCTGTATGTGGTAGTGCATTTGAAAT 59.341 34.615 0.00 0.00 0.00 2.17
2875 6733 6.851609 TGTATGTGGTAGTGCATTTGAAATC 58.148 36.000 0.00 0.00 0.00 2.17
2876 6734 6.658816 TGTATGTGGTAGTGCATTTGAAATCT 59.341 34.615 0.00 0.00 0.00 2.40
2877 6735 5.627499 TGTGGTAGTGCATTTGAAATCTC 57.373 39.130 0.00 0.00 0.00 2.75
2878 6736 5.316167 TGTGGTAGTGCATTTGAAATCTCT 58.684 37.500 0.00 0.00 0.00 3.10
2879 6737 6.472016 TGTGGTAGTGCATTTGAAATCTCTA 58.528 36.000 0.00 0.00 0.00 2.43
2880 6738 6.939730 TGTGGTAGTGCATTTGAAATCTCTAA 59.060 34.615 0.00 0.00 0.00 2.10
2881 6739 7.446931 TGTGGTAGTGCATTTGAAATCTCTAAA 59.553 33.333 0.00 0.00 0.00 1.85
2882 6740 8.296713 GTGGTAGTGCATTTGAAATCTCTAAAA 58.703 33.333 0.00 0.00 0.00 1.52
2883 6741 8.855110 TGGTAGTGCATTTGAAATCTCTAAAAA 58.145 29.630 0.00 0.00 0.00 1.94
2884 6742 9.346725 GGTAGTGCATTTGAAATCTCTAAAAAG 57.653 33.333 0.00 0.00 0.00 2.27
2901 6759 9.819267 CTCTAAAAAGATAAATACTTCCTCCGT 57.181 33.333 0.00 0.00 0.00 4.69
2904 6762 7.860918 AAAAGATAAATACTTCCTCCGTTCC 57.139 36.000 0.00 0.00 0.00 3.62
2905 6763 6.555463 AAGATAAATACTTCCTCCGTTCCA 57.445 37.500 0.00 0.00 0.00 3.53
2906 6764 6.749036 AGATAAATACTTCCTCCGTTCCAT 57.251 37.500 0.00 0.00 0.00 3.41
2907 6765 7.850935 AGATAAATACTTCCTCCGTTCCATA 57.149 36.000 0.00 0.00 0.00 2.74
2908 6766 8.258850 AGATAAATACTTCCTCCGTTCCATAA 57.741 34.615 0.00 0.00 0.00 1.90
2909 6767 8.881262 AGATAAATACTTCCTCCGTTCCATAAT 58.119 33.333 0.00 0.00 0.00 1.28
2915 6773 7.850935 ACTTCCTCCGTTCCATAATATAAGA 57.149 36.000 0.00 0.00 0.00 2.10
2916 6774 8.258850 ACTTCCTCCGTTCCATAATATAAGAA 57.741 34.615 0.00 0.00 0.00 2.52
2917 6775 8.148999 ACTTCCTCCGTTCCATAATATAAGAAC 58.851 37.037 5.67 5.67 36.19 3.01
2938 6796 9.445786 AAGAACGTTTTTGACATTAATGTAGTG 57.554 29.630 20.83 9.32 41.95 2.74
2939 6797 8.617809 AGAACGTTTTTGACATTAATGTAGTGT 58.382 29.630 20.83 9.88 41.95 3.55
2940 6798 8.555166 AACGTTTTTGACATTAATGTAGTGTG 57.445 30.769 20.83 10.26 41.95 3.82
2941 6799 7.921787 ACGTTTTTGACATTAATGTAGTGTGA 58.078 30.769 20.83 3.87 41.95 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 9.139174 CTGATAAATAATGTGTTTCGCCTTTTT 57.861 29.630 0.00 0.00 0.00 1.94
12 13 8.303876 ACTGATAAATAATGTGTTTCGCCTTTT 58.696 29.630 0.00 0.00 0.00 2.27
13 14 7.826690 ACTGATAAATAATGTGTTTCGCCTTT 58.173 30.769 0.00 0.00 0.00 3.11
14 15 7.336931 AGACTGATAAATAATGTGTTTCGCCTT 59.663 33.333 0.00 0.00 0.00 4.35
15 16 6.823689 AGACTGATAAATAATGTGTTTCGCCT 59.176 34.615 0.00 0.00 0.00 5.52
16 17 7.016361 AGACTGATAAATAATGTGTTTCGCC 57.984 36.000 0.00 0.00 0.00 5.54
17 18 7.794349 GCTAGACTGATAAATAATGTGTTTCGC 59.206 37.037 0.00 0.00 0.00 4.70
18 19 9.035607 AGCTAGACTGATAAATAATGTGTTTCG 57.964 33.333 0.00 0.00 0.00 3.46
22 23 9.988815 CCTAAGCTAGACTGATAAATAATGTGT 57.011 33.333 0.00 0.00 0.00 3.72
23 24 8.930760 GCCTAAGCTAGACTGATAAATAATGTG 58.069 37.037 0.00 0.00 35.50 3.21
24 25 8.651389 TGCCTAAGCTAGACTGATAAATAATGT 58.349 33.333 0.00 0.00 40.80 2.71
25 26 9.664332 ATGCCTAAGCTAGACTGATAAATAATG 57.336 33.333 0.00 0.00 40.80 1.90
26 27 9.664332 CATGCCTAAGCTAGACTGATAAATAAT 57.336 33.333 0.00 0.00 40.80 1.28
27 28 8.097038 CCATGCCTAAGCTAGACTGATAAATAA 58.903 37.037 0.00 0.00 40.80 1.40
28 29 7.235606 ACCATGCCTAAGCTAGACTGATAAATA 59.764 37.037 0.00 0.00 40.80 1.40
29 30 6.043706 ACCATGCCTAAGCTAGACTGATAAAT 59.956 38.462 0.00 0.00 40.80 1.40
30 31 5.366768 ACCATGCCTAAGCTAGACTGATAAA 59.633 40.000 0.00 0.00 40.80 1.40
31 32 4.901849 ACCATGCCTAAGCTAGACTGATAA 59.098 41.667 0.00 0.00 40.80 1.75
32 33 4.483950 ACCATGCCTAAGCTAGACTGATA 58.516 43.478 0.00 0.00 40.80 2.15
33 34 3.312890 ACCATGCCTAAGCTAGACTGAT 58.687 45.455 0.00 0.00 40.80 2.90
34 35 2.695666 GACCATGCCTAAGCTAGACTGA 59.304 50.000 0.00 0.00 40.80 3.41
35 36 2.224161 GGACCATGCCTAAGCTAGACTG 60.224 54.545 0.00 0.00 40.80 3.51
36 37 2.043227 GGACCATGCCTAAGCTAGACT 58.957 52.381 0.00 0.00 40.80 3.24
37 38 1.762957 TGGACCATGCCTAAGCTAGAC 59.237 52.381 0.00 0.00 40.80 2.59
38 39 2.174685 TGGACCATGCCTAAGCTAGA 57.825 50.000 0.00 0.00 40.80 2.43
39 40 2.369860 TGATGGACCATGCCTAAGCTAG 59.630 50.000 12.99 0.00 40.80 3.42
40 41 2.407562 TGATGGACCATGCCTAAGCTA 58.592 47.619 12.99 0.00 40.80 3.32
41 42 1.216064 TGATGGACCATGCCTAAGCT 58.784 50.000 12.99 0.00 40.80 3.74
42 43 2.057137 TTGATGGACCATGCCTAAGC 57.943 50.000 12.99 0.00 40.48 3.09
43 44 2.360165 GCTTTGATGGACCATGCCTAAG 59.640 50.000 12.99 11.63 0.00 2.18
44 45 2.291475 TGCTTTGATGGACCATGCCTAA 60.291 45.455 12.99 0.90 0.00 2.69
45 46 1.284491 TGCTTTGATGGACCATGCCTA 59.716 47.619 12.99 0.00 0.00 3.93
46 47 0.040058 TGCTTTGATGGACCATGCCT 59.960 50.000 12.99 0.00 0.00 4.75
47 48 0.896923 TTGCTTTGATGGACCATGCC 59.103 50.000 12.99 0.00 0.00 4.40
48 49 2.973694 ATTGCTTTGATGGACCATGC 57.026 45.000 12.99 9.67 0.00 4.06
49 50 3.372822 GCAAATTGCTTTGATGGACCATG 59.627 43.478 12.99 0.00 43.71 3.66
50 51 3.602483 GCAAATTGCTTTGATGGACCAT 58.398 40.909 11.19 6.71 43.71 3.55
51 52 3.042871 GCAAATTGCTTTGATGGACCA 57.957 42.857 11.19 0.00 43.71 4.02
79 80 3.070748 GGCGCCACCACAAAATATTTTT 58.929 40.909 24.80 0.97 38.86 1.94
80 81 2.301583 AGGCGCCACCACAAAATATTTT 59.698 40.909 31.54 7.64 43.14 1.82
81 82 1.899142 AGGCGCCACCACAAAATATTT 59.101 42.857 31.54 0.00 43.14 1.40
82 83 1.555967 AGGCGCCACCACAAAATATT 58.444 45.000 31.54 0.00 43.14 1.28
83 84 1.555967 AAGGCGCCACCACAAAATAT 58.444 45.000 31.54 0.00 43.14 1.28
84 85 1.813786 GTAAGGCGCCACCACAAAATA 59.186 47.619 31.54 4.12 43.14 1.40
85 86 0.601057 GTAAGGCGCCACCACAAAAT 59.399 50.000 31.54 0.00 43.14 1.82
86 87 1.787057 CGTAAGGCGCCACCACAAAA 61.787 55.000 31.54 0.67 43.14 2.44
87 88 2.255172 CGTAAGGCGCCACCACAAA 61.255 57.895 31.54 1.88 43.14 2.83
88 89 2.661840 TTCGTAAGGCGCCACCACAA 62.662 55.000 31.54 12.73 43.14 3.33
89 90 2.661840 TTTCGTAAGGCGCCACCACA 62.662 55.000 31.54 6.21 43.14 4.17
90 91 1.303091 ATTTCGTAAGGCGCCACCAC 61.303 55.000 31.54 21.04 43.14 4.16
91 92 1.003112 ATTTCGTAAGGCGCCACCA 60.003 52.632 31.54 10.25 43.14 4.17
92 93 1.022451 TGATTTCGTAAGGCGCCACC 61.022 55.000 31.54 14.70 41.07 4.61
93 94 0.800012 TTGATTTCGTAAGGCGCCAC 59.200 50.000 31.54 18.55 41.07 5.01
94 95 1.083489 CTTGATTTCGTAAGGCGCCA 58.917 50.000 31.54 5.56 41.07 5.69
95 96 1.062148 GACTTGATTTCGTAAGGCGCC 59.938 52.381 21.89 21.89 41.07 6.53
96 97 2.000447 AGACTTGATTTCGTAAGGCGC 59.000 47.619 0.00 0.00 37.02 6.53
97 98 5.518847 TCATAAGACTTGATTTCGTAAGGCG 59.481 40.000 0.00 0.00 37.02 5.52
98 99 6.757010 TCTCATAAGACTTGATTTCGTAAGGC 59.243 38.462 0.00 0.00 38.47 4.35
148 149 9.288576 TGAGATAAGTGACTTTTCAAATGTCAT 57.711 29.630 18.85 9.08 41.78 3.06
149 150 8.675705 TGAGATAAGTGACTTTTCAAATGTCA 57.324 30.769 16.16 13.46 38.24 3.58
150 151 9.766277 GATGAGATAAGTGACTTTTCAAATGTC 57.234 33.333 16.16 8.84 31.90 3.06
151 152 9.288576 TGATGAGATAAGTGACTTTTCAAATGT 57.711 29.630 16.16 0.00 31.90 2.71
154 155 9.506018 TCATGATGAGATAAGTGACTTTTCAAA 57.494 29.630 16.16 5.90 31.90 2.69
155 156 9.676861 ATCATGATGAGATAAGTGACTTTTCAA 57.323 29.630 16.16 6.21 31.90 2.69
208 209 9.553064 GTCAATGTCATGATAAGATAAGGACTT 57.447 33.333 0.00 0.00 0.00 3.01
209 210 8.932610 AGTCAATGTCATGATAAGATAAGGACT 58.067 33.333 0.00 1.16 0.00 3.85
210 211 9.553064 AAGTCAATGTCATGATAAGATAAGGAC 57.447 33.333 0.00 0.00 0.00 3.85
239 240 9.649167 CAGATTATGCATATGTGACAGAGATAA 57.351 33.333 7.36 0.00 0.00 1.75
240 241 9.028284 TCAGATTATGCATATGTGACAGAGATA 57.972 33.333 7.36 0.00 0.00 1.98
241 242 7.904205 TCAGATTATGCATATGTGACAGAGAT 58.096 34.615 7.36 0.00 0.00 2.75
242 243 7.294017 TCAGATTATGCATATGTGACAGAGA 57.706 36.000 7.36 0.00 0.00 3.10
243 244 8.443937 CAATCAGATTATGCATATGTGACAGAG 58.556 37.037 7.36 1.31 0.00 3.35
244 245 7.935210 ACAATCAGATTATGCATATGTGACAGA 59.065 33.333 7.36 0.79 0.00 3.41
245 246 8.095937 ACAATCAGATTATGCATATGTGACAG 57.904 34.615 7.36 9.93 0.00 3.51
246 247 8.454570 AACAATCAGATTATGCATATGTGACA 57.545 30.769 7.36 0.00 0.00 3.58
247 248 9.740239 AAAACAATCAGATTATGCATATGTGAC 57.260 29.630 7.36 0.00 0.00 3.67
250 251 9.754382 GGAAAAACAATCAGATTATGCATATGT 57.246 29.630 7.36 4.16 0.00 2.29
251 252 9.199982 GGGAAAAACAATCAGATTATGCATATG 57.800 33.333 7.36 3.27 0.00 1.78
252 253 9.151177 AGGGAAAAACAATCAGATTATGCATAT 57.849 29.630 7.36 0.00 0.00 1.78
253 254 8.537728 AGGGAAAAACAATCAGATTATGCATA 57.462 30.769 1.16 1.16 0.00 3.14
254 255 7.124599 TGAGGGAAAAACAATCAGATTATGCAT 59.875 33.333 3.79 3.79 0.00 3.96
255 256 6.436847 TGAGGGAAAAACAATCAGATTATGCA 59.563 34.615 0.00 0.00 0.00 3.96
256 257 6.866480 TGAGGGAAAAACAATCAGATTATGC 58.134 36.000 0.00 0.00 0.00 3.14
259 260 9.527157 TGTAATGAGGGAAAAACAATCAGATTA 57.473 29.630 0.00 0.00 0.00 1.75
260 261 8.421249 TGTAATGAGGGAAAAACAATCAGATT 57.579 30.769 0.00 0.00 0.00 2.40
261 262 8.306761 GTTGTAATGAGGGAAAAACAATCAGAT 58.693 33.333 0.00 0.00 0.00 2.90
262 263 7.521423 CGTTGTAATGAGGGAAAAACAATCAGA 60.521 37.037 0.00 0.00 0.00 3.27
263 264 6.582295 CGTTGTAATGAGGGAAAAACAATCAG 59.418 38.462 0.00 0.00 0.00 2.90
264 265 6.442952 CGTTGTAATGAGGGAAAAACAATCA 58.557 36.000 0.00 0.00 0.00 2.57
265 266 5.344933 GCGTTGTAATGAGGGAAAAACAATC 59.655 40.000 0.00 0.00 0.00 2.67
266 267 5.221342 TGCGTTGTAATGAGGGAAAAACAAT 60.221 36.000 0.00 0.00 0.00 2.71
267 268 4.098044 TGCGTTGTAATGAGGGAAAAACAA 59.902 37.500 0.00 0.00 0.00 2.83
268 269 3.632604 TGCGTTGTAATGAGGGAAAAACA 59.367 39.130 0.00 0.00 0.00 2.83
269 270 4.231718 TGCGTTGTAATGAGGGAAAAAC 57.768 40.909 0.00 0.00 0.00 2.43
270 271 4.520874 TCATGCGTTGTAATGAGGGAAAAA 59.479 37.500 0.00 0.00 0.00 1.94
271 272 4.075682 TCATGCGTTGTAATGAGGGAAAA 58.924 39.130 0.00 0.00 0.00 2.29
272 273 3.680490 TCATGCGTTGTAATGAGGGAAA 58.320 40.909 0.00 0.00 0.00 3.13
273 274 3.270027 CTCATGCGTTGTAATGAGGGAA 58.730 45.455 5.01 0.00 43.99 3.97
274 275 2.905075 CTCATGCGTTGTAATGAGGGA 58.095 47.619 5.01 0.00 43.99 4.20
275 276 1.331756 GCTCATGCGTTGTAATGAGGG 59.668 52.381 13.04 0.00 46.53 4.30
276 277 2.009051 TGCTCATGCGTTGTAATGAGG 58.991 47.619 13.04 0.00 46.53 3.86
278 279 6.200808 CAAATATGCTCATGCGTTGTAATGA 58.799 36.000 0.00 0.00 43.34 2.57
279 280 6.428673 CAAATATGCTCATGCGTTGTAATG 57.571 37.500 0.00 0.00 43.34 1.90
354 355 9.154847 CTTTTCTTTGTTGGTTCTTTCAAGAAT 57.845 29.630 5.30 0.00 45.83 2.40
355 356 8.364142 TCTTTTCTTTGTTGGTTCTTTCAAGAA 58.636 29.630 0.00 0.00 42.41 2.52
356 357 7.891561 TCTTTTCTTTGTTGGTTCTTTCAAGA 58.108 30.769 0.00 0.00 0.00 3.02
357 358 8.435430 GTTCTTTTCTTTGTTGGTTCTTTCAAG 58.565 33.333 0.00 0.00 0.00 3.02
358 359 7.386573 GGTTCTTTTCTTTGTTGGTTCTTTCAA 59.613 33.333 0.00 0.00 0.00 2.69
359 360 6.871492 GGTTCTTTTCTTTGTTGGTTCTTTCA 59.129 34.615 0.00 0.00 0.00 2.69
360 361 7.097192 AGGTTCTTTTCTTTGTTGGTTCTTTC 58.903 34.615 0.00 0.00 0.00 2.62
361 362 7.004555 AGGTTCTTTTCTTTGTTGGTTCTTT 57.995 32.000 0.00 0.00 0.00 2.52
362 363 6.605471 AGGTTCTTTTCTTTGTTGGTTCTT 57.395 33.333 0.00 0.00 0.00 2.52
363 364 6.096423 GGTAGGTTCTTTTCTTTGTTGGTTCT 59.904 38.462 0.00 0.00 0.00 3.01
364 365 6.127563 TGGTAGGTTCTTTTCTTTGTTGGTTC 60.128 38.462 0.00 0.00 0.00 3.62
365 366 5.717654 TGGTAGGTTCTTTTCTTTGTTGGTT 59.282 36.000 0.00 0.00 0.00 3.67
366 367 5.265989 TGGTAGGTTCTTTTCTTTGTTGGT 58.734 37.500 0.00 0.00 0.00 3.67
367 368 5.845391 TGGTAGGTTCTTTTCTTTGTTGG 57.155 39.130 0.00 0.00 0.00 3.77
368 369 8.716646 ATTTTGGTAGGTTCTTTTCTTTGTTG 57.283 30.769 0.00 0.00 0.00 3.33
370 371 9.416284 TCTATTTTGGTAGGTTCTTTTCTTTGT 57.584 29.630 0.00 0.00 0.00 2.83
371 372 9.899226 CTCTATTTTGGTAGGTTCTTTTCTTTG 57.101 33.333 0.00 0.00 0.00 2.77
372 373 8.577296 GCTCTATTTTGGTAGGTTCTTTTCTTT 58.423 33.333 0.00 0.00 0.00 2.52
373 374 7.724061 TGCTCTATTTTGGTAGGTTCTTTTCTT 59.276 33.333 0.00 0.00 0.00 2.52
374 375 7.231467 TGCTCTATTTTGGTAGGTTCTTTTCT 58.769 34.615 0.00 0.00 0.00 2.52
375 376 7.448748 TGCTCTATTTTGGTAGGTTCTTTTC 57.551 36.000 0.00 0.00 0.00 2.29
376 377 7.833285 TTGCTCTATTTTGGTAGGTTCTTTT 57.167 32.000 0.00 0.00 0.00 2.27
377 378 7.833285 TTTGCTCTATTTTGGTAGGTTCTTT 57.167 32.000 0.00 0.00 0.00 2.52
378 379 7.833285 TTTTGCTCTATTTTGGTAGGTTCTT 57.167 32.000 0.00 0.00 0.00 2.52
379 380 7.833285 TTTTTGCTCTATTTTGGTAGGTTCT 57.167 32.000 0.00 0.00 0.00 3.01
380 381 7.063426 GCATTTTTGCTCTATTTTGGTAGGTTC 59.937 37.037 0.00 0.00 0.00 3.62
381 382 6.873605 GCATTTTTGCTCTATTTTGGTAGGTT 59.126 34.615 0.00 0.00 0.00 3.50
382 383 6.211384 AGCATTTTTGCTCTATTTTGGTAGGT 59.789 34.615 0.00 0.00 42.12 3.08
383 384 6.633856 AGCATTTTTGCTCTATTTTGGTAGG 58.366 36.000 0.00 0.00 42.12 3.18
384 385 8.677300 TCTAGCATTTTTGCTCTATTTTGGTAG 58.323 33.333 3.35 0.00 45.00 3.18
385 386 8.458843 GTCTAGCATTTTTGCTCTATTTTGGTA 58.541 33.333 3.35 0.00 45.00 3.25
386 387 7.315890 GTCTAGCATTTTTGCTCTATTTTGGT 58.684 34.615 3.35 0.00 45.00 3.67
387 388 6.753744 GGTCTAGCATTTTTGCTCTATTTTGG 59.246 38.462 3.35 0.00 45.00 3.28
388 389 7.487189 CAGGTCTAGCATTTTTGCTCTATTTTG 59.513 37.037 3.35 0.00 45.00 2.44
389 390 7.542025 CAGGTCTAGCATTTTTGCTCTATTTT 58.458 34.615 3.35 0.00 45.00 1.82
390 391 6.405176 GCAGGTCTAGCATTTTTGCTCTATTT 60.405 38.462 3.35 0.00 45.00 1.40
391 392 5.067023 GCAGGTCTAGCATTTTTGCTCTATT 59.933 40.000 3.35 0.00 45.00 1.73
392 393 4.578105 GCAGGTCTAGCATTTTTGCTCTAT 59.422 41.667 3.35 0.00 45.00 1.98
393 394 3.941483 GCAGGTCTAGCATTTTTGCTCTA 59.059 43.478 3.35 0.00 45.00 2.43
394 395 2.751806 GCAGGTCTAGCATTTTTGCTCT 59.248 45.455 3.35 0.00 45.00 4.09
395 396 2.476854 CGCAGGTCTAGCATTTTTGCTC 60.477 50.000 3.35 0.00 45.00 4.26
397 398 1.900237 CGCAGGTCTAGCATTTTTGC 58.100 50.000 0.00 0.00 0.00 3.68
432 433 8.471361 AGATAAGTTAAGGCAAGTTACGTAAC 57.529 34.615 27.23 27.23 35.37 2.50
433 434 8.526147 AGAGATAAGTTAAGGCAAGTTACGTAA 58.474 33.333 3.29 3.29 35.37 3.18
434 435 8.059798 AGAGATAAGTTAAGGCAAGTTACGTA 57.940 34.615 0.00 0.00 35.37 3.57
435 436 6.932947 AGAGATAAGTTAAGGCAAGTTACGT 58.067 36.000 0.00 0.00 35.37 3.57
436 437 7.253684 CGAAGAGATAAGTTAAGGCAAGTTACG 60.254 40.741 0.00 0.00 35.37 3.18
437 438 7.464311 GCGAAGAGATAAGTTAAGGCAAGTTAC 60.464 40.741 0.00 0.00 35.37 2.50
438 439 6.534079 GCGAAGAGATAAGTTAAGGCAAGTTA 59.466 38.462 0.00 0.00 36.65 2.24
439 440 5.351740 GCGAAGAGATAAGTTAAGGCAAGTT 59.648 40.000 0.00 0.00 34.15 2.66
440 441 4.870991 GCGAAGAGATAAGTTAAGGCAAGT 59.129 41.667 0.00 0.00 0.00 3.16
441 442 4.271291 GGCGAAGAGATAAGTTAAGGCAAG 59.729 45.833 0.00 0.00 0.00 4.01
442 443 4.189231 GGCGAAGAGATAAGTTAAGGCAA 58.811 43.478 0.00 0.00 0.00 4.52
443 444 3.431766 GGGCGAAGAGATAAGTTAAGGCA 60.432 47.826 0.00 0.00 0.00 4.75
444 445 3.132160 GGGCGAAGAGATAAGTTAAGGC 58.868 50.000 0.00 0.00 0.00 4.35
445 446 3.729966 GGGGCGAAGAGATAAGTTAAGG 58.270 50.000 0.00 0.00 0.00 2.69
446 447 3.067742 TCGGGGCGAAGAGATAAGTTAAG 59.932 47.826 0.00 0.00 31.06 1.85
447 448 3.025978 TCGGGGCGAAGAGATAAGTTAA 58.974 45.455 0.00 0.00 31.06 2.01
448 449 2.621998 CTCGGGGCGAAGAGATAAGTTA 59.378 50.000 0.00 0.00 36.65 2.24
449 450 1.409427 CTCGGGGCGAAGAGATAAGTT 59.591 52.381 0.00 0.00 36.65 2.66
450 451 1.033574 CTCGGGGCGAAGAGATAAGT 58.966 55.000 0.00 0.00 36.65 2.24
451 452 0.315568 CCTCGGGGCGAAGAGATAAG 59.684 60.000 0.00 0.00 36.65 1.73
452 453 1.113517 CCCTCGGGGCGAAGAGATAA 61.114 60.000 0.00 0.00 35.35 1.75
453 454 1.530891 CCCTCGGGGCGAAGAGATA 60.531 63.158 0.00 0.00 35.35 1.98
454 455 2.840102 CCCTCGGGGCGAAGAGAT 60.840 66.667 0.00 0.00 35.35 2.75
464 465 2.821679 GAAACAAGGAGGCCCTCGGG 62.822 65.000 4.29 0.00 43.48 5.14
465 466 1.377333 GAAACAAGGAGGCCCTCGG 60.377 63.158 4.29 0.00 43.48 4.63
466 467 1.377333 GGAAACAAGGAGGCCCTCG 60.377 63.158 4.29 0.00 43.48 4.63
467 468 0.034960 GAGGAAACAAGGAGGCCCTC 60.035 60.000 0.73 0.73 43.48 4.30
469 470 1.286248 TAGAGGAAACAAGGAGGCCC 58.714 55.000 0.00 0.00 0.00 5.80
470 471 2.618302 GGTTAGAGGAAACAAGGAGGCC 60.618 54.545 0.00 0.00 0.00 5.19
471 472 2.039879 TGGTTAGAGGAAACAAGGAGGC 59.960 50.000 0.00 0.00 29.35 4.70
472 473 4.367039 TTGGTTAGAGGAAACAAGGAGG 57.633 45.455 0.00 0.00 39.91 4.30
473 474 5.592688 TGTTTTGGTTAGAGGAAACAAGGAG 59.407 40.000 0.00 0.00 45.44 3.69
474 475 5.511363 TGTTTTGGTTAGAGGAAACAAGGA 58.489 37.500 0.00 0.00 45.44 3.36
475 476 5.845391 TGTTTTGGTTAGAGGAAACAAGG 57.155 39.130 0.00 0.00 45.44 3.61
476 477 5.691754 GCATGTTTTGGTTAGAGGAAACAAG 59.308 40.000 4.84 2.48 45.44 3.16
477 478 5.452636 GGCATGTTTTGGTTAGAGGAAACAA 60.453 40.000 4.84 0.00 43.17 2.83
478 479 4.038642 GGCATGTTTTGGTTAGAGGAAACA 59.961 41.667 3.39 3.39 43.56 2.83
479 480 4.038642 TGGCATGTTTTGGTTAGAGGAAAC 59.961 41.667 0.00 0.00 33.72 2.78
480 481 4.038642 GTGGCATGTTTTGGTTAGAGGAAA 59.961 41.667 0.00 0.00 0.00 3.13
481 482 3.572255 GTGGCATGTTTTGGTTAGAGGAA 59.428 43.478 0.00 0.00 0.00 3.36
482 483 3.153919 GTGGCATGTTTTGGTTAGAGGA 58.846 45.455 0.00 0.00 0.00 3.71
483 484 2.231235 GGTGGCATGTTTTGGTTAGAGG 59.769 50.000 0.00 0.00 0.00 3.69
484 485 3.157087 AGGTGGCATGTTTTGGTTAGAG 58.843 45.455 0.00 0.00 0.00 2.43
485 486 3.237268 AGGTGGCATGTTTTGGTTAGA 57.763 42.857 0.00 0.00 0.00 2.10
486 487 5.659440 ATTAGGTGGCATGTTTTGGTTAG 57.341 39.130 0.00 0.00 0.00 2.34
487 488 6.722129 ACTAATTAGGTGGCATGTTTTGGTTA 59.278 34.615 16.73 0.00 0.00 2.85
488 489 4.972751 AATTAGGTGGCATGTTTTGGTT 57.027 36.364 0.00 0.00 0.00 3.67
489 490 5.083821 ACTAATTAGGTGGCATGTTTTGGT 58.916 37.500 16.73 0.00 0.00 3.67
490 491 5.659440 ACTAATTAGGTGGCATGTTTTGG 57.341 39.130 16.73 0.00 0.00 3.28
491 492 8.250332 ACATAACTAATTAGGTGGCATGTTTTG 58.750 33.333 13.50 6.18 34.12 2.44
492 493 8.361169 ACATAACTAATTAGGTGGCATGTTTT 57.639 30.769 13.50 0.00 34.12 2.43
493 494 7.954666 ACATAACTAATTAGGTGGCATGTTT 57.045 32.000 13.50 0.00 34.12 2.83
494 495 7.954666 AACATAACTAATTAGGTGGCATGTT 57.045 32.000 18.35 18.35 35.54 2.71
495 496 9.640952 ATTAACATAACTAATTAGGTGGCATGT 57.359 29.630 13.50 11.71 35.54 3.21
540 541 9.507329 CCATTTTCAGTAATGCTATACCTACAT 57.493 33.333 0.00 0.00 34.81 2.29
541 542 8.710239 TCCATTTTCAGTAATGCTATACCTACA 58.290 33.333 0.00 0.00 34.81 2.74
542 543 9.555727 TTCCATTTTCAGTAATGCTATACCTAC 57.444 33.333 0.00 0.00 34.81 3.18
543 544 9.555727 GTTCCATTTTCAGTAATGCTATACCTA 57.444 33.333 0.00 0.00 34.81 3.08
544 545 7.226720 CGTTCCATTTTCAGTAATGCTATACCT 59.773 37.037 0.00 0.00 34.81 3.08
545 546 7.225931 TCGTTCCATTTTCAGTAATGCTATACC 59.774 37.037 0.00 0.00 34.81 2.73
546 547 8.138365 TCGTTCCATTTTCAGTAATGCTATAC 57.862 34.615 0.00 0.00 34.81 1.47
547 548 7.042051 GCTCGTTCCATTTTCAGTAATGCTATA 60.042 37.037 0.00 0.00 34.81 1.31
548 549 6.238484 GCTCGTTCCATTTTCAGTAATGCTAT 60.238 38.462 0.00 0.00 34.81 2.97
549 550 5.064707 GCTCGTTCCATTTTCAGTAATGCTA 59.935 40.000 0.00 0.00 34.81 3.49
550 551 4.142600 GCTCGTTCCATTTTCAGTAATGCT 60.143 41.667 0.00 0.00 34.81 3.79
551 552 4.098416 GCTCGTTCCATTTTCAGTAATGC 58.902 43.478 0.00 0.00 34.81 3.56
552 553 4.334443 CGCTCGTTCCATTTTCAGTAATG 58.666 43.478 0.00 0.00 35.70 1.90
553 554 3.374058 CCGCTCGTTCCATTTTCAGTAAT 59.626 43.478 0.00 0.00 0.00 1.89
554 555 2.739913 CCGCTCGTTCCATTTTCAGTAA 59.260 45.455 0.00 0.00 0.00 2.24
555 556 2.028839 TCCGCTCGTTCCATTTTCAGTA 60.029 45.455 0.00 0.00 0.00 2.74
556 557 1.156736 CCGCTCGTTCCATTTTCAGT 58.843 50.000 0.00 0.00 0.00 3.41
557 558 1.438651 TCCGCTCGTTCCATTTTCAG 58.561 50.000 0.00 0.00 0.00 3.02
558 559 1.885560 TTCCGCTCGTTCCATTTTCA 58.114 45.000 0.00 0.00 0.00 2.69
559 560 2.981400 TTTCCGCTCGTTCCATTTTC 57.019 45.000 0.00 0.00 0.00 2.29
560 561 3.377172 CCTATTTCCGCTCGTTCCATTTT 59.623 43.478 0.00 0.00 0.00 1.82
561 562 2.943033 CCTATTTCCGCTCGTTCCATTT 59.057 45.455 0.00 0.00 0.00 2.32
562 563 2.561569 CCTATTTCCGCTCGTTCCATT 58.438 47.619 0.00 0.00 0.00 3.16
563 564 1.202651 CCCTATTTCCGCTCGTTCCAT 60.203 52.381 0.00 0.00 0.00 3.41
564 565 0.177141 CCCTATTTCCGCTCGTTCCA 59.823 55.000 0.00 0.00 0.00 3.53
565 566 0.462789 TCCCTATTTCCGCTCGTTCC 59.537 55.000 0.00 0.00 0.00 3.62
566 567 2.304751 TTCCCTATTTCCGCTCGTTC 57.695 50.000 0.00 0.00 0.00 3.95
567 568 2.289819 TGTTTCCCTATTTCCGCTCGTT 60.290 45.455 0.00 0.00 0.00 3.85
568 569 1.276989 TGTTTCCCTATTTCCGCTCGT 59.723 47.619 0.00 0.00 0.00 4.18
569 570 2.018542 TGTTTCCCTATTTCCGCTCG 57.981 50.000 0.00 0.00 0.00 5.03
570 571 3.606687 TCTTGTTTCCCTATTTCCGCTC 58.393 45.455 0.00 0.00 0.00 5.03
571 572 3.713826 TCTTGTTTCCCTATTTCCGCT 57.286 42.857 0.00 0.00 0.00 5.52
572 573 4.776795 TTTCTTGTTTCCCTATTTCCGC 57.223 40.909 0.00 0.00 0.00 5.54
573 574 5.336451 CCCTTTTCTTGTTTCCCTATTTCCG 60.336 44.000 0.00 0.00 0.00 4.30
574 575 5.046591 CCCCTTTTCTTGTTTCCCTATTTCC 60.047 44.000 0.00 0.00 0.00 3.13
575 576 5.778241 TCCCCTTTTCTTGTTTCCCTATTTC 59.222 40.000 0.00 0.00 0.00 2.17
576 577 5.722290 TCCCCTTTTCTTGTTTCCCTATTT 58.278 37.500 0.00 0.00 0.00 1.40
577 578 5.348259 TCCCCTTTTCTTGTTTCCCTATT 57.652 39.130 0.00 0.00 0.00 1.73
578 579 5.348259 TTCCCCTTTTCTTGTTTCCCTAT 57.652 39.130 0.00 0.00 0.00 2.57
579 580 4.817874 TTCCCCTTTTCTTGTTTCCCTA 57.182 40.909 0.00 0.00 0.00 3.53
580 581 3.699025 TTCCCCTTTTCTTGTTTCCCT 57.301 42.857 0.00 0.00 0.00 4.20
581 582 3.007940 CCATTCCCCTTTTCTTGTTTCCC 59.992 47.826 0.00 0.00 0.00 3.97
582 583 3.901222 TCCATTCCCCTTTTCTTGTTTCC 59.099 43.478 0.00 0.00 0.00 3.13
583 584 4.021104 CCTCCATTCCCCTTTTCTTGTTTC 60.021 45.833 0.00 0.00 0.00 2.78
584 585 3.903714 CCTCCATTCCCCTTTTCTTGTTT 59.096 43.478 0.00 0.00 0.00 2.83
585 586 3.116746 ACCTCCATTCCCCTTTTCTTGTT 60.117 43.478 0.00 0.00 0.00 2.83
586 587 2.450886 ACCTCCATTCCCCTTTTCTTGT 59.549 45.455 0.00 0.00 0.00 3.16
587 588 2.827921 CACCTCCATTCCCCTTTTCTTG 59.172 50.000 0.00 0.00 0.00 3.02
588 589 2.823152 GCACCTCCATTCCCCTTTTCTT 60.823 50.000 0.00 0.00 0.00 2.52
589 590 1.272704 GCACCTCCATTCCCCTTTTCT 60.273 52.381 0.00 0.00 0.00 2.52
590 591 1.186200 GCACCTCCATTCCCCTTTTC 58.814 55.000 0.00 0.00 0.00 2.29
591 592 0.611896 CGCACCTCCATTCCCCTTTT 60.612 55.000 0.00 0.00 0.00 2.27
592 593 1.000896 CGCACCTCCATTCCCCTTT 60.001 57.895 0.00 0.00 0.00 3.11
593 594 1.497309 TTCGCACCTCCATTCCCCTT 61.497 55.000 0.00 0.00 0.00 3.95
594 595 1.923395 TTCGCACCTCCATTCCCCT 60.923 57.895 0.00 0.00 0.00 4.79
595 596 1.749258 GTTCGCACCTCCATTCCCC 60.749 63.158 0.00 0.00 0.00 4.81
596 597 2.106683 CGTTCGCACCTCCATTCCC 61.107 63.158 0.00 0.00 0.00 3.97
597 598 2.106683 CCGTTCGCACCTCCATTCC 61.107 63.158 0.00 0.00 0.00 3.01
598 599 0.672401 TTCCGTTCGCACCTCCATTC 60.672 55.000 0.00 0.00 0.00 2.67
599 600 0.250553 TTTCCGTTCGCACCTCCATT 60.251 50.000 0.00 0.00 0.00 3.16
600 601 0.673644 CTTTCCGTTCGCACCTCCAT 60.674 55.000 0.00 0.00 0.00 3.41
601 602 1.301401 CTTTCCGTTCGCACCTCCA 60.301 57.895 0.00 0.00 0.00 3.86
602 603 0.601841 TTCTTTCCGTTCGCACCTCC 60.602 55.000 0.00 0.00 0.00 4.30
603 604 0.511653 GTTCTTTCCGTTCGCACCTC 59.488 55.000 0.00 0.00 0.00 3.85
604 605 0.883370 GGTTCTTTCCGTTCGCACCT 60.883 55.000 0.00 0.00 0.00 4.00
605 606 1.572941 GGTTCTTTCCGTTCGCACC 59.427 57.895 0.00 0.00 0.00 5.01
606 607 1.203313 CGGTTCTTTCCGTTCGCAC 59.797 57.895 0.00 0.00 44.77 5.34
607 608 3.632700 CGGTTCTTTCCGTTCGCA 58.367 55.556 0.00 0.00 44.77 5.10
614 615 2.032426 TGCTTTTCGTTCGGTTCTTTCC 59.968 45.455 0.00 0.00 0.00 3.13
615 616 3.289076 CTGCTTTTCGTTCGGTTCTTTC 58.711 45.455 0.00 0.00 0.00 2.62
616 617 2.032924 CCTGCTTTTCGTTCGGTTCTTT 59.967 45.455 0.00 0.00 0.00 2.52
617 618 1.602377 CCTGCTTTTCGTTCGGTTCTT 59.398 47.619 0.00 0.00 0.00 2.52
618 619 1.226746 CCTGCTTTTCGTTCGGTTCT 58.773 50.000 0.00 0.00 0.00 3.01
619 620 0.237498 CCCTGCTTTTCGTTCGGTTC 59.763 55.000 0.00 0.00 0.00 3.62
620 621 1.792118 GCCCTGCTTTTCGTTCGGTT 61.792 55.000 0.00 0.00 0.00 4.44
621 622 2.258726 GCCCTGCTTTTCGTTCGGT 61.259 57.895 0.00 0.00 0.00 4.69
622 623 2.561373 GCCCTGCTTTTCGTTCGG 59.439 61.111 0.00 0.00 0.00 4.30
623 624 2.561373 GGCCCTGCTTTTCGTTCG 59.439 61.111 0.00 0.00 0.00 3.95
624 625 1.512156 TTCGGCCCTGCTTTTCGTTC 61.512 55.000 0.00 0.00 0.00 3.95
625 626 1.515521 CTTCGGCCCTGCTTTTCGTT 61.516 55.000 0.00 0.00 0.00 3.85
626 627 1.966451 CTTCGGCCCTGCTTTTCGT 60.966 57.895 0.00 0.00 0.00 3.85
627 628 1.234615 TTCTTCGGCCCTGCTTTTCG 61.235 55.000 0.00 0.00 0.00 3.46
628 629 0.958822 TTTCTTCGGCCCTGCTTTTC 59.041 50.000 0.00 0.00 0.00 2.29
629 630 1.341209 CTTTTCTTCGGCCCTGCTTTT 59.659 47.619 0.00 0.00 0.00 2.27
630 631 0.961753 CTTTTCTTCGGCCCTGCTTT 59.038 50.000 0.00 0.00 0.00 3.51
631 632 0.110486 TCTTTTCTTCGGCCCTGCTT 59.890 50.000 0.00 0.00 0.00 3.91
632 633 0.110486 TTCTTTTCTTCGGCCCTGCT 59.890 50.000 0.00 0.00 0.00 4.24
633 634 0.523519 CTTCTTTTCTTCGGCCCTGC 59.476 55.000 0.00 0.00 0.00 4.85
634 635 2.185004 TCTTCTTTTCTTCGGCCCTG 57.815 50.000 0.00 0.00 0.00 4.45
635 636 2.951229 TTCTTCTTTTCTTCGGCCCT 57.049 45.000 0.00 0.00 0.00 5.19
636 637 4.316205 TTTTTCTTCTTTTCTTCGGCCC 57.684 40.909 0.00 0.00 0.00 5.80
654 655 3.242188 CGAGTTCGTTCCGTTCACTTTTT 60.242 43.478 0.00 0.00 34.11 1.94
655 656 2.283351 CGAGTTCGTTCCGTTCACTTTT 59.717 45.455 0.00 0.00 34.11 2.27
656 657 1.856597 CGAGTTCGTTCCGTTCACTTT 59.143 47.619 0.00 0.00 34.11 2.66
657 658 1.066002 TCGAGTTCGTTCCGTTCACTT 59.934 47.619 1.07 0.00 40.80 3.16
658 659 0.664761 TCGAGTTCGTTCCGTTCACT 59.335 50.000 1.07 0.00 40.80 3.41
659 660 1.450905 CTTCGAGTTCGTTCCGTTCAC 59.549 52.381 1.07 0.00 40.80 3.18
660 661 1.762419 CTTCGAGTTCGTTCCGTTCA 58.238 50.000 1.07 0.00 40.80 3.18
661 662 0.433871 GCTTCGAGTTCGTTCCGTTC 59.566 55.000 1.07 0.00 40.80 3.95
662 663 0.031721 AGCTTCGAGTTCGTTCCGTT 59.968 50.000 1.07 0.00 40.80 4.44
663 664 0.877071 TAGCTTCGAGTTCGTTCCGT 59.123 50.000 0.00 0.00 40.80 4.69
664 665 2.110226 GATAGCTTCGAGTTCGTTCCG 58.890 52.381 0.00 0.00 40.80 4.30
665 666 2.099427 AGGATAGCTTCGAGTTCGTTCC 59.901 50.000 0.00 1.26 40.80 3.62
666 667 3.423996 AGGATAGCTTCGAGTTCGTTC 57.576 47.619 0.00 0.00 40.80 3.95
667 668 4.261656 CCATAGGATAGCTTCGAGTTCGTT 60.262 45.833 0.00 0.00 40.80 3.85
668 669 3.253677 CCATAGGATAGCTTCGAGTTCGT 59.746 47.826 0.00 0.00 40.80 3.85
669 670 3.366476 CCCATAGGATAGCTTCGAGTTCG 60.366 52.174 0.00 0.00 36.42 3.95
670 671 3.615351 GCCCATAGGATAGCTTCGAGTTC 60.615 52.174 0.00 0.00 33.47 3.01
671 672 2.300437 GCCCATAGGATAGCTTCGAGTT 59.700 50.000 0.00 0.00 33.47 3.01
672 673 1.896465 GCCCATAGGATAGCTTCGAGT 59.104 52.381 0.00 0.00 33.47 4.18
673 674 1.205893 GGCCCATAGGATAGCTTCGAG 59.794 57.143 0.00 0.00 33.47 4.04
674 675 1.267121 GGCCCATAGGATAGCTTCGA 58.733 55.000 0.00 0.00 33.47 3.71
675 676 0.250513 GGGCCCATAGGATAGCTTCG 59.749 60.000 19.95 0.00 33.47 3.79
676 677 0.621082 GGGGCCCATAGGATAGCTTC 59.379 60.000 26.86 0.00 33.47 3.86
677 678 0.846870 GGGGGCCCATAGGATAGCTT 60.847 60.000 26.86 0.00 35.81 3.74
678 679 1.229984 GGGGGCCCATAGGATAGCT 60.230 63.158 26.86 0.00 35.81 3.32
679 680 1.541368 TGGGGGCCCATAGGATAGC 60.541 63.158 26.86 3.49 41.89 2.97
689 690 1.528309 CGAATGTGTATGGGGGCCC 60.528 63.158 15.76 15.76 0.00 5.80
690 691 2.193536 GCGAATGTGTATGGGGGCC 61.194 63.158 0.00 0.00 0.00 5.80
691 692 1.152963 AGCGAATGTGTATGGGGGC 60.153 57.895 0.00 0.00 0.00 5.80
692 693 0.469917 AGAGCGAATGTGTATGGGGG 59.530 55.000 0.00 0.00 0.00 5.40
693 694 1.586422 CAGAGCGAATGTGTATGGGG 58.414 55.000 0.00 0.00 0.00 4.96
694 695 1.586422 CCAGAGCGAATGTGTATGGG 58.414 55.000 0.00 0.00 0.00 4.00
695 696 1.586422 CCCAGAGCGAATGTGTATGG 58.414 55.000 0.00 0.00 0.00 2.74
696 697 0.940126 GCCCAGAGCGAATGTGTATG 59.060 55.000 0.00 0.00 0.00 2.39
697 698 3.386543 GCCCAGAGCGAATGTGTAT 57.613 52.632 0.00 0.00 0.00 2.29
698 699 4.932789 GCCCAGAGCGAATGTGTA 57.067 55.556 0.00 0.00 0.00 2.90
708 709 3.423162 CTCCTCGCTTCGCCCAGAG 62.423 68.421 0.00 0.00 0.00 3.35
709 710 3.452786 CTCCTCGCTTCGCCCAGA 61.453 66.667 0.00 0.00 0.00 3.86
710 711 2.507110 TTTCTCCTCGCTTCGCCCAG 62.507 60.000 0.00 0.00 0.00 4.45
711 712 2.579657 TTTCTCCTCGCTTCGCCCA 61.580 57.895 0.00 0.00 0.00 5.36
712 713 2.101233 GTTTCTCCTCGCTTCGCCC 61.101 63.158 0.00 0.00 0.00 6.13
713 714 2.101233 GGTTTCTCCTCGCTTCGCC 61.101 63.158 0.00 0.00 0.00 5.54
714 715 1.079750 AGGTTTCTCCTCGCTTCGC 60.080 57.895 0.00 0.00 44.42 4.70
715 716 0.038159 ACAGGTTTCTCCTCGCTTCG 60.038 55.000 0.00 0.00 46.24 3.79
716 717 2.171341 AACAGGTTTCTCCTCGCTTC 57.829 50.000 0.00 0.00 46.24 3.86
717 718 2.222027 CAAACAGGTTTCTCCTCGCTT 58.778 47.619 0.00 0.00 46.24 4.68
718 719 1.884235 CAAACAGGTTTCTCCTCGCT 58.116 50.000 0.00 0.00 46.24 4.93
719 720 0.238553 GCAAACAGGTTTCTCCTCGC 59.761 55.000 0.00 0.00 46.24 5.03
720 721 1.593196 TGCAAACAGGTTTCTCCTCG 58.407 50.000 0.00 0.00 46.24 4.63
721 722 4.385358 TTTTGCAAACAGGTTTCTCCTC 57.615 40.909 12.39 0.00 46.24 3.71
799 806 1.301165 GGACAAGGTAACGCGTGGT 60.301 57.895 14.98 0.00 46.39 4.16
868 875 2.883386 GGGGTACGTGAGGATGTACTAG 59.117 54.545 0.00 0.00 42.23 2.57
887 894 1.158484 TCGATGTCTAGACGAGCGGG 61.158 60.000 23.11 10.01 0.00 6.13
1107 1120 1.557651 GAATGCTCCCGAACGAGTAC 58.442 55.000 0.00 0.00 32.11 2.73
1297 1334 4.787999 GTCCAGGATGTCGACGAC 57.212 61.111 20.97 20.97 0.00 4.34
1578 1615 1.372499 GCACTTCTCGTACGGCACA 60.372 57.895 16.52 0.00 0.00 4.57
1709 5563 3.622826 CCACGAACAGGGTCCCGT 61.623 66.667 0.99 0.48 35.46 5.28
1852 5706 2.114670 CGGGGTCGAATGCAAGCAT 61.115 57.895 0.86 0.86 39.00 3.79
1864 5718 3.462678 GAGCCTCTGGTCGGGGTC 61.463 72.222 0.00 0.00 41.78 4.46
1973 5829 3.236816 CAATGCACTGAACATTTCGTCC 58.763 45.455 0.00 0.00 35.58 4.79
1987 5843 0.239347 GACACCACAGAGCAATGCAC 59.761 55.000 8.35 0.00 0.00 4.57
2001 5857 3.975168 TTAAGCTAACTCTGGGACACC 57.025 47.619 0.00 0.00 37.24 4.16
2023 5879 0.991146 TGCAGAAGGGTTGCAGGATA 59.009 50.000 0.00 0.00 45.89 2.59
2144 6000 6.150976 AGTCCATCGTGCATTTCAAAGATTTA 59.849 34.615 0.00 0.00 0.00 1.40
2633 6491 4.702131 GGAGTATTTTTGACATGCCAGTCT 59.298 41.667 7.10 0.00 39.27 3.24
2634 6492 4.142381 GGGAGTATTTTTGACATGCCAGTC 60.142 45.833 0.00 0.00 38.99 3.51
2635 6493 3.763897 GGGAGTATTTTTGACATGCCAGT 59.236 43.478 0.00 0.00 0.00 4.00
2636 6494 4.019174 AGGGAGTATTTTTGACATGCCAG 58.981 43.478 0.00 0.00 0.00 4.85
2660 6518 1.661617 CGCGACAAATAATTCCGGACA 59.338 47.619 1.83 0.00 0.00 4.02
2666 6524 6.483687 ACACTAATTCCGCGACAAATAATTC 58.516 36.000 8.23 0.00 0.00 2.17
2678 6536 5.515270 GCTTCCAAAATTACACTAATTCCGC 59.485 40.000 0.00 0.00 37.39 5.54
2680 6538 5.515270 GCGCTTCCAAAATTACACTAATTCC 59.485 40.000 0.00 0.00 37.39 3.01
2684 6542 5.398169 CATGCGCTTCCAAAATTACACTAA 58.602 37.500 9.73 0.00 0.00 2.24
2688 6546 2.605030 GCATGCGCTTCCAAAATTACA 58.395 42.857 9.73 0.00 34.30 2.41
2717 6575 8.465999 ACTGAATTGTTTATGTTGTTCTGTTGA 58.534 29.630 0.00 0.00 0.00 3.18
2718 6576 8.633075 ACTGAATTGTTTATGTTGTTCTGTTG 57.367 30.769 0.00 0.00 0.00 3.33
2751 6609 8.947115 AGAAAGACAAATATTTAGAAACGGAGG 58.053 33.333 0.00 0.00 0.00 4.30
2769 6627 9.559732 TCATTTGTTGAAATCTCTAGAAAGACA 57.440 29.630 0.00 0.00 28.65 3.41
2770 6628 9.818796 GTCATTTGTTGAAATCTCTAGAAAGAC 57.181 33.333 0.00 0.00 35.70 3.01
2771 6629 9.784531 AGTCATTTGTTGAAATCTCTAGAAAGA 57.215 29.630 0.00 0.00 35.70 2.52
2782 6640 8.774586 GCTCCGTATATAGTCATTTGTTGAAAT 58.225 33.333 0.00 0.00 35.70 2.17
2783 6641 7.766738 TGCTCCGTATATAGTCATTTGTTGAAA 59.233 33.333 0.00 0.00 35.70 2.69
2784 6642 7.269316 TGCTCCGTATATAGTCATTTGTTGAA 58.731 34.615 0.00 0.00 35.70 2.69
2785 6643 6.811954 TGCTCCGTATATAGTCATTTGTTGA 58.188 36.000 0.00 0.00 0.00 3.18
2786 6644 7.477144 TTGCTCCGTATATAGTCATTTGTTG 57.523 36.000 0.00 0.00 0.00 3.33
2787 6645 8.500753 TTTTGCTCCGTATATAGTCATTTGTT 57.499 30.769 0.00 0.00 0.00 2.83
2788 6646 8.559536 CATTTTGCTCCGTATATAGTCATTTGT 58.440 33.333 0.00 0.00 0.00 2.83
2789 6647 8.773645 TCATTTTGCTCCGTATATAGTCATTTG 58.226 33.333 0.00 0.00 0.00 2.32
2790 6648 8.902540 TCATTTTGCTCCGTATATAGTCATTT 57.097 30.769 0.00 0.00 0.00 2.32
2791 6649 8.150945 ACTCATTTTGCTCCGTATATAGTCATT 58.849 33.333 0.00 0.00 0.00 2.57
2792 6650 7.600375 CACTCATTTTGCTCCGTATATAGTCAT 59.400 37.037 0.00 0.00 0.00 3.06
2793 6651 6.923508 CACTCATTTTGCTCCGTATATAGTCA 59.076 38.462 0.00 0.00 0.00 3.41
2794 6652 7.145985 TCACTCATTTTGCTCCGTATATAGTC 58.854 38.462 0.00 0.00 0.00 2.59
2795 6653 7.050970 TCACTCATTTTGCTCCGTATATAGT 57.949 36.000 0.00 0.00 0.00 2.12
2796 6654 7.946655 TTCACTCATTTTGCTCCGTATATAG 57.053 36.000 0.00 0.00 0.00 1.31
2797 6655 8.367911 AGATTCACTCATTTTGCTCCGTATATA 58.632 33.333 0.00 0.00 0.00 0.86
2798 6656 7.220030 AGATTCACTCATTTTGCTCCGTATAT 58.780 34.615 0.00 0.00 0.00 0.86
2799 6657 6.582636 AGATTCACTCATTTTGCTCCGTATA 58.417 36.000 0.00 0.00 0.00 1.47
2800 6658 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
2801 6659 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
2802 6660 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
2803 6661 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
2804 6662 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
2805 6663 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
2839 6697 8.957466 GCACTACCACATACAGATGTATATAGA 58.043 37.037 5.21 0.00 44.82 1.98
2840 6698 8.739972 TGCACTACCACATACAGATGTATATAG 58.260 37.037 5.21 7.73 44.82 1.31
2841 6699 8.644374 TGCACTACCACATACAGATGTATATA 57.356 34.615 5.21 0.00 44.82 0.86
2842 6700 7.539034 TGCACTACCACATACAGATGTATAT 57.461 36.000 5.21 0.00 44.82 0.86
2843 6701 6.969993 TGCACTACCACATACAGATGTATA 57.030 37.500 5.21 0.00 44.82 1.47
2844 6702 5.869649 TGCACTACCACATACAGATGTAT 57.130 39.130 0.00 0.00 44.82 2.29
2845 6703 5.869649 ATGCACTACCACATACAGATGTA 57.130 39.130 0.00 0.00 44.82 2.29
2847 6705 5.585844 TCAAATGCACTACCACATACAGATG 59.414 40.000 0.00 0.00 39.16 2.90
2848 6706 5.744171 TCAAATGCACTACCACATACAGAT 58.256 37.500 0.00 0.00 0.00 2.90
2849 6707 5.159273 TCAAATGCACTACCACATACAGA 57.841 39.130 0.00 0.00 0.00 3.41
2850 6708 5.878332 TTCAAATGCACTACCACATACAG 57.122 39.130 0.00 0.00 0.00 2.74
2851 6709 6.658816 AGATTTCAAATGCACTACCACATACA 59.341 34.615 0.00 0.00 0.00 2.29
2852 6710 7.066284 AGAGATTTCAAATGCACTACCACATAC 59.934 37.037 0.00 0.00 0.00 2.39
2853 6711 7.112122 AGAGATTTCAAATGCACTACCACATA 58.888 34.615 0.00 0.00 0.00 2.29
2854 6712 5.948162 AGAGATTTCAAATGCACTACCACAT 59.052 36.000 0.00 0.00 0.00 3.21
2855 6713 5.316167 AGAGATTTCAAATGCACTACCACA 58.684 37.500 0.00 0.00 0.00 4.17
2856 6714 5.886960 AGAGATTTCAAATGCACTACCAC 57.113 39.130 0.00 0.00 0.00 4.16
2857 6715 7.994425 TTTAGAGATTTCAAATGCACTACCA 57.006 32.000 0.00 0.00 0.00 3.25
2858 6716 9.346725 CTTTTTAGAGATTTCAAATGCACTACC 57.653 33.333 0.00 0.00 0.00 3.18
2875 6733 9.819267 ACGGAGGAAGTATTTATCTTTTTAGAG 57.181 33.333 0.00 0.00 0.00 2.43
2878 6736 9.387257 GGAACGGAGGAAGTATTTATCTTTTTA 57.613 33.333 0.00 0.00 0.00 1.52
2879 6737 7.886446 TGGAACGGAGGAAGTATTTATCTTTTT 59.114 33.333 0.00 0.00 0.00 1.94
2880 6738 7.399634 TGGAACGGAGGAAGTATTTATCTTTT 58.600 34.615 0.00 0.00 0.00 2.27
2881 6739 6.954232 TGGAACGGAGGAAGTATTTATCTTT 58.046 36.000 0.00 0.00 0.00 2.52
2882 6740 6.555463 TGGAACGGAGGAAGTATTTATCTT 57.445 37.500 0.00 0.00 0.00 2.40
2883 6741 6.749036 ATGGAACGGAGGAAGTATTTATCT 57.251 37.500 0.00 0.00 0.00 1.98
2889 6747 9.543231 TCTTATATTATGGAACGGAGGAAGTAT 57.457 33.333 0.00 0.00 0.00 2.12
2890 6748 8.945195 TCTTATATTATGGAACGGAGGAAGTA 57.055 34.615 0.00 0.00 0.00 2.24
2891 6749 7.850935 TCTTATATTATGGAACGGAGGAAGT 57.149 36.000 0.00 0.00 0.00 3.01
2892 6750 8.535690 GTTCTTATATTATGGAACGGAGGAAG 57.464 38.462 7.88 0.00 0.00 3.46
2912 6770 9.445786 CACTACATTAATGTCAAAAACGTTCTT 57.554 29.630 24.00 0.00 41.97 2.52
2913 6771 8.617809 ACACTACATTAATGTCAAAAACGTTCT 58.382 29.630 24.00 0.00 41.97 3.01
2914 6772 8.678510 CACACTACATTAATGTCAAAAACGTTC 58.321 33.333 24.00 0.00 41.97 3.95
2915 6773 8.399425 TCACACTACATTAATGTCAAAAACGTT 58.601 29.630 24.00 0.00 41.97 3.99
2916 6774 7.921787 TCACACTACATTAATGTCAAAAACGT 58.078 30.769 24.00 10.27 41.97 3.99


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.