Multiple sequence alignment - TraesCS5A01G051900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G051900 chr5A 100.000 2471 0 0 1 2471 47129325 47126855 0.000000e+00 4564.0
1 TraesCS5A01G051900 chr5A 81.553 206 32 5 1748 1951 33309951 33309750 5.470000e-37 165.0
2 TraesCS5A01G051900 chr5D 86.575 1594 120 44 100 1630 58687145 58685583 0.000000e+00 1672.0
3 TraesCS5A01G051900 chr5D 89.623 530 30 9 1694 2203 58685222 58684698 0.000000e+00 651.0
4 TraesCS5A01G051900 chr5D 83.846 260 34 7 1694 1951 287865544 287865291 8.830000e-60 241.0
5 TraesCS5A01G051900 chr5B 90.693 1096 49 23 640 1695 72259132 72258050 0.000000e+00 1410.0
6 TraesCS5A01G051900 chr5B 85.781 1294 74 53 457 1695 63851510 63850272 0.000000e+00 1269.0
7 TraesCS5A01G051900 chr5B 92.150 535 26 10 1173 1695 72821083 72821613 0.000000e+00 741.0
8 TraesCS5A01G051900 chr5B 90.141 497 34 9 1694 2179 63850202 63849710 1.250000e-177 632.0
9 TraesCS5A01G051900 chr5B 86.992 123 14 2 2297 2417 63635840 63635718 1.190000e-28 137.0
10 TraesCS5A01G051900 chr5B 97.297 37 1 0 1949 1985 12320519 12320555 2.050000e-06 63.9
11 TraesCS5A01G051900 chr1A 86.810 652 56 17 841 1472 546216297 546216938 0.000000e+00 701.0
12 TraesCS5A01G051900 chr1A 92.213 488 28 6 985 1472 542167979 542168456 0.000000e+00 682.0
13 TraesCS5A01G051900 chr1B 84.916 716 71 27 777 1475 620551443 620552138 0.000000e+00 689.0
14 TraesCS5A01G051900 chr1B 92.089 493 25 8 985 1475 621272198 621271718 0.000000e+00 682.0
15 TraesCS5A01G051900 chr1B 92.008 488 29 4 985 1472 621059330 621059807 0.000000e+00 676.0
16 TraesCS5A01G051900 chr1B 83.010 206 29 5 1748 1951 513974427 513974628 5.430000e-42 182.0
17 TraesCS5A01G051900 chrUn 80.967 972 96 49 769 1702 249354029 249353109 0.000000e+00 688.0
18 TraesCS5A01G051900 chrUn 80.967 972 96 49 769 1702 249358397 249357477 0.000000e+00 688.0
19 TraesCS5A01G051900 chrUn 80.967 972 96 49 769 1702 249362765 249361845 0.000000e+00 688.0
20 TraesCS5A01G051900 chrUn 80.967 972 96 49 769 1702 249947049 249947969 0.000000e+00 688.0
21 TraesCS5A01G051900 chrUn 80.967 972 96 49 769 1702 249951417 249952337 0.000000e+00 688.0
22 TraesCS5A01G051900 chrUn 80.967 972 96 49 769 1702 251170643 251171563 0.000000e+00 688.0
23 TraesCS5A01G051900 chrUn 82.524 206 30 5 1748 1951 62124317 62124116 2.530000e-40 176.0
24 TraesCS5A01G051900 chrUn 84.483 174 22 5 1780 1951 249352774 249352604 1.520000e-37 167.0
25 TraesCS5A01G051900 chrUn 84.483 174 22 5 1780 1951 249357142 249356972 1.520000e-37 167.0
26 TraesCS5A01G051900 chrUn 84.483 174 22 5 1780 1951 249361510 249361340 1.520000e-37 167.0
27 TraesCS5A01G051900 chrUn 84.181 177 23 5 1777 1951 249943933 249944106 1.520000e-37 167.0
28 TraesCS5A01G051900 chrUn 84.181 177 23 5 1777 1951 249948301 249948474 1.520000e-37 167.0
29 TraesCS5A01G051900 chrUn 84.181 177 23 5 1777 1951 249952669 249952842 1.520000e-37 167.0
30 TraesCS5A01G051900 chrUn 84.181 177 23 5 1777 1951 251167527 251167700 1.520000e-37 167.0
31 TraesCS5A01G051900 chrUn 84.181 177 23 5 1777 1951 251171895 251172068 1.520000e-37 167.0
32 TraesCS5A01G051900 chr1D 92.418 488 27 4 985 1472 451625156 451625633 0.000000e+00 688.0
33 TraesCS5A01G051900 chr1D 84.951 206 25 5 1748 1951 66761021 66761222 1.160000e-48 204.0
34 TraesCS5A01G051900 chr6B 84.615 260 33 7 1694 1951 149741477 149741223 4.080000e-63 252.0
35 TraesCS5A01G051900 chr4D 84.615 260 33 6 1694 1951 457301479 457301225 4.080000e-63 252.0
36 TraesCS5A01G051900 chr3A 84.436 257 32 8 1694 1948 401135164 401135414 1.900000e-61 246.0
37 TraesCS5A01G051900 chr3A 84.545 110 15 1 1595 1702 401134970 401135079 9.340000e-20 108.0
38 TraesCS5A01G051900 chr7A 84.466 206 26 5 1748 1951 559986304 559986505 5.390000e-47 198.0
39 TraesCS5A01G051900 chr7A 84.466 206 26 5 1748 1951 727860595 727860796 5.390000e-47 198.0
40 TraesCS5A01G051900 chr2A 83.981 206 27 6 1748 1951 675201528 675201327 2.510000e-45 193.0
41 TraesCS5A01G051900 chr3D 83.173 208 25 8 1748 1951 21937510 21937711 5.430000e-42 182.0
42 TraesCS5A01G051900 chr2B 82.524 206 30 6 1748 1951 12733261 12733462 2.530000e-40 176.0
43 TraesCS5A01G051900 chr4B 82.039 206 31 5 1748 1951 509513345 509513546 1.180000e-38 171.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G051900 chr5A 47126855 47129325 2470 True 4564.000000 4564 100.000000 1 2471 1 chr5A.!!$R2 2470
1 TraesCS5A01G051900 chr5D 58684698 58687145 2447 True 1161.500000 1672 88.099000 100 2203 2 chr5D.!!$R2 2103
2 TraesCS5A01G051900 chr5B 72258050 72259132 1082 True 1410.000000 1410 90.693000 640 1695 1 chr5B.!!$R2 1055
3 TraesCS5A01G051900 chr5B 63849710 63851510 1800 True 950.500000 1269 87.961000 457 2179 2 chr5B.!!$R3 1722
4 TraesCS5A01G051900 chr5B 72821083 72821613 530 False 741.000000 741 92.150000 1173 1695 1 chr5B.!!$F2 522
5 TraesCS5A01G051900 chr1A 546216297 546216938 641 False 701.000000 701 86.810000 841 1472 1 chr1A.!!$F2 631
6 TraesCS5A01G051900 chr1B 620551443 620552138 695 False 689.000000 689 84.916000 777 1475 1 chr1B.!!$F2 698
7 TraesCS5A01G051900 chrUn 249352604 249362765 10161 True 427.500000 688 82.725000 769 1951 6 chrUn.!!$R2 1182
8 TraesCS5A01G051900 chrUn 249943933 249952842 8909 False 375.400000 688 82.895400 769 1951 5 chrUn.!!$F1 1182
9 TraesCS5A01G051900 chrUn 251167527 251172068 4541 False 340.666667 688 83.109667 769 1951 3 chrUn.!!$F2 1182

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
74 75 0.516877 CATGAAACCACGTCGTGCAT 59.483 50.0 20.01 14.07 31.34 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1533 17094 0.464036 AACCAGAGTCGACAAGCACA 59.536 50.0 19.5 0.0 0.0 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.544246 GGAGTAATTGTTGGTGGTGCC 59.456 52.381 0.00 0.00 37.90 5.01
21 22 1.199097 GAGTAATTGTTGGTGGTGCCG 59.801 52.381 0.00 0.00 41.21 5.69
23 24 0.896019 TAATTGTTGGTGGTGCCGGG 60.896 55.000 2.18 0.00 41.21 5.73
24 25 2.937959 AATTGTTGGTGGTGCCGGGT 62.938 55.000 2.18 0.00 41.21 5.28
26 27 4.887190 GTTGGTGGTGCCGGGTGT 62.887 66.667 2.18 0.00 41.21 4.16
27 28 4.130554 TTGGTGGTGCCGGGTGTT 62.131 61.111 2.18 0.00 41.21 3.32
30 31 4.887190 GTGGTGCCGGGTGTTGGT 62.887 66.667 2.18 0.00 0.00 3.67
31 32 4.572571 TGGTGCCGGGTGTTGGTC 62.573 66.667 2.18 0.00 0.00 4.02
36 37 4.636435 CCGGGTGTTGGTCGCCTT 62.636 66.667 0.00 0.00 45.32 4.35
37 38 3.353836 CGGGTGTTGGTCGCCTTG 61.354 66.667 0.00 0.00 45.32 3.61
38 39 2.203294 GGGTGTTGGTCGCCTTGT 60.203 61.111 0.00 0.00 45.32 3.16
39 40 2.258726 GGGTGTTGGTCGCCTTGTC 61.259 63.158 0.00 0.00 45.32 3.18
40 41 2.604174 GGTGTTGGTCGCCTTGTCG 61.604 63.158 0.00 0.00 42.91 4.35
41 42 2.970324 TGTTGGTCGCCTTGTCGC 60.970 61.111 0.00 0.00 0.00 5.19
42 43 3.723348 GTTGGTCGCCTTGTCGCC 61.723 66.667 0.00 0.00 0.00 5.54
60 61 3.362040 CCACCTGGGAAAGCATGAA 57.638 52.632 0.00 0.00 40.01 2.57
61 62 1.631405 CCACCTGGGAAAGCATGAAA 58.369 50.000 0.00 0.00 40.01 2.69
62 63 1.273327 CCACCTGGGAAAGCATGAAAC 59.727 52.381 0.00 0.00 40.01 2.78
64 65 1.133199 ACCTGGGAAAGCATGAAACCA 60.133 47.619 0.00 0.00 0.00 3.67
65 66 1.273327 CCTGGGAAAGCATGAAACCAC 59.727 52.381 0.00 0.00 0.00 4.16
66 67 0.958091 TGGGAAAGCATGAAACCACG 59.042 50.000 0.00 0.00 0.00 4.94
67 68 0.958822 GGGAAAGCATGAAACCACGT 59.041 50.000 0.00 0.00 0.00 4.49
68 69 1.068541 GGGAAAGCATGAAACCACGTC 60.069 52.381 0.00 0.00 0.00 4.34
69 70 1.399727 GGAAAGCATGAAACCACGTCG 60.400 52.381 0.00 0.00 0.00 5.12
70 71 1.263217 GAAAGCATGAAACCACGTCGT 59.737 47.619 0.00 0.00 0.00 4.34
71 72 0.586319 AAGCATGAAACCACGTCGTG 59.414 50.000 18.54 18.54 35.49 4.35
72 73 4.818417 CATGAAACCACGTCGTGC 57.182 55.556 20.01 6.80 31.34 5.34
73 74 1.938125 CATGAAACCACGTCGTGCA 59.062 52.632 20.01 12.38 31.34 4.57
74 75 0.516877 CATGAAACCACGTCGTGCAT 59.483 50.000 20.01 14.07 31.34 3.96
75 76 0.796312 ATGAAACCACGTCGTGCATC 59.204 50.000 20.01 15.95 31.34 3.91
76 77 1.225376 TGAAACCACGTCGTGCATCC 61.225 55.000 20.01 9.08 31.34 3.51
80 81 3.478394 CACGTCGTGCATCCGTGG 61.478 66.667 21.02 7.66 45.97 4.94
81 82 4.735132 ACGTCGTGCATCCGTGGG 62.735 66.667 0.00 0.00 32.86 4.61
83 84 2.186903 GTCGTGCATCCGTGGGAT 59.813 61.111 0.00 0.00 44.21 3.85
90 91 2.517414 ATCCGTGGGATGCCATGG 59.483 61.111 33.13 33.13 41.43 3.66
92 93 2.203252 CCGTGGGATGCCATGGAG 60.203 66.667 34.96 12.58 46.65 3.86
93 94 2.903855 CGTGGGATGCCATGGAGC 60.904 66.667 18.40 0.45 0.00 4.70
94 95 2.599597 GTGGGATGCCATGGAGCT 59.400 61.111 18.40 0.00 0.00 4.09
95 96 1.826921 GTGGGATGCCATGGAGCTG 60.827 63.158 18.40 0.00 0.00 4.24
96 97 2.910994 GGGATGCCATGGAGCTGC 60.911 66.667 18.40 0.00 0.00 5.25
182 183 2.231820 ACGGAGTACAACGCAAAGC 58.768 52.632 8.82 0.00 41.94 3.51
201 202 2.725008 CTAGCTCCTCGCCCTTCG 59.275 66.667 0.00 0.00 40.39 3.79
228 229 1.515020 GAGCTCGATGGTCTGCAGT 59.485 57.895 14.67 0.00 39.86 4.40
236 237 2.079925 GATGGTCTGCAGTGAGTTTCC 58.920 52.381 14.67 6.80 0.00 3.13
246 247 1.671742 TGAGTTTCCCTCAGTCGGC 59.328 57.895 0.00 0.00 45.34 5.54
248 249 2.434359 GTTTCCCTCAGTCGGCGG 60.434 66.667 7.21 0.00 0.00 6.13
266 267 1.227973 GAGCAAAGGATAGGGCGGG 60.228 63.158 0.00 0.00 0.00 6.13
298 299 1.478510 GAGGAGATGAAAGTGGAGCGA 59.521 52.381 0.00 0.00 0.00 4.93
304 305 2.341846 TGAAAGTGGAGCGAAAAGGT 57.658 45.000 0.00 0.00 0.00 3.50
306 307 3.020984 TGAAAGTGGAGCGAAAAGGTTT 58.979 40.909 0.00 0.00 0.00 3.27
353 354 1.029681 GTCTGGCTTCGGGTTTTTGT 58.970 50.000 0.00 0.00 0.00 2.83
354 355 2.223745 GTCTGGCTTCGGGTTTTTGTA 58.776 47.619 0.00 0.00 0.00 2.41
359 360 2.443416 GCTTCGGGTTTTTGTAGGGAT 58.557 47.619 0.00 0.00 0.00 3.85
361 362 3.626217 GCTTCGGGTTTTTGTAGGGATAG 59.374 47.826 0.00 0.00 0.00 2.08
362 363 4.624604 GCTTCGGGTTTTTGTAGGGATAGA 60.625 45.833 0.00 0.00 0.00 1.98
395 396 3.087065 AGCCATAGCGGGTTGGTT 58.913 55.556 9.16 2.51 45.83 3.67
432 433 1.524621 CGGGCGCATCTGGATCTTT 60.525 57.895 10.83 0.00 0.00 2.52
447 448 3.181496 GGATCTTTCCAAATTCGCCTCAC 60.181 47.826 0.00 0.00 42.12 3.51
511 515 0.753479 TTTGTTTGAGAAGGCCGGCA 60.753 50.000 30.85 2.40 0.00 5.69
581 603 0.743345 GCATACTCCGGTTGTGGGTC 60.743 60.000 0.00 0.00 0.00 4.46
592 614 4.519213 CGGTTGTGGGTCCTTTAATGATA 58.481 43.478 0.00 0.00 0.00 2.15
593 615 4.334481 CGGTTGTGGGTCCTTTAATGATAC 59.666 45.833 0.00 0.00 0.00 2.24
594 616 5.258051 GGTTGTGGGTCCTTTAATGATACA 58.742 41.667 0.00 0.00 0.00 2.29
598 620 8.311109 GTTGTGGGTCCTTTAATGATACATTTT 58.689 33.333 2.40 0.00 0.00 1.82
600 622 8.310382 TGTGGGTCCTTTAATGATACATTTTTG 58.690 33.333 2.40 0.00 0.00 2.44
601 623 7.763985 GTGGGTCCTTTAATGATACATTTTTGG 59.236 37.037 2.40 3.60 0.00 3.28
643 669 1.800805 CTCTATAATGCTGGTGGCGG 58.199 55.000 0.00 0.00 45.43 6.13
645 671 1.228124 TATAATGCTGGTGGCGGGC 60.228 57.895 0.00 0.00 45.43 6.13
657 683 1.215382 GGCGGGCAGGATTCAAAAC 59.785 57.895 0.00 0.00 0.00 2.43
685 711 3.253230 CTGCGAAATCCAAAACCATTCC 58.747 45.455 0.00 0.00 0.00 3.01
769 803 4.142093 CCCAGATCATTTTTGCCCTTACAG 60.142 45.833 0.00 0.00 0.00 2.74
992 3386 3.003173 CCCCACTCTCCCGAAGCA 61.003 66.667 0.00 0.00 0.00 3.91
993 3387 2.581354 CCCACTCTCCCGAAGCAG 59.419 66.667 0.00 0.00 0.00 4.24
994 3388 2.125350 CCACTCTCCCGAAGCAGC 60.125 66.667 0.00 0.00 0.00 5.25
995 3389 2.507992 CACTCTCCCGAAGCAGCG 60.508 66.667 0.00 0.00 0.00 5.18
1136 7922 4.452733 GACGGCGTCCAAGGAGGG 62.453 72.222 28.72 0.00 38.24 4.30
1197 12342 2.047179 AAGGCGAAGAAGGGCGTC 60.047 61.111 0.00 0.00 34.74 5.19
1472 17015 3.246167 ACCAAGTTCACCTCCTCCTAGAT 60.246 47.826 0.00 0.00 0.00 1.98
1473 17016 3.777522 CCAAGTTCACCTCCTCCTAGATT 59.222 47.826 0.00 0.00 0.00 2.40
1474 17017 4.383552 CCAAGTTCACCTCCTCCTAGATTG 60.384 50.000 0.00 0.00 0.00 2.67
1475 17018 2.769095 AGTTCACCTCCTCCTAGATTGC 59.231 50.000 0.00 0.00 0.00 3.56
1476 17019 2.501723 GTTCACCTCCTCCTAGATTGCA 59.498 50.000 0.00 0.00 0.00 4.08
1477 17020 2.832838 TCACCTCCTCCTAGATTGCAA 58.167 47.619 0.00 0.00 0.00 4.08
1509 17061 7.617329 TCTGCATTGCCTGTATCTATCTAGTAT 59.383 37.037 6.12 0.00 0.00 2.12
1530 17091 8.999220 AGTATTAGCTGGTTCTGTTACTTTAC 57.001 34.615 0.00 0.00 0.00 2.01
1533 17094 8.919777 ATTAGCTGGTTCTGTTACTTTACTTT 57.080 30.769 0.00 0.00 0.00 2.66
1580 17142 2.404215 ACTACAAGTGCTGTTAGTGCG 58.596 47.619 0.00 0.00 39.64 5.34
1611 17173 3.317149 AGTTGATTGATGGATGATTGCCG 59.683 43.478 0.00 0.00 0.00 5.69
1700 17595 7.174253 TCAAAAGTAGTGATTTATTTCGCCTGT 59.826 33.333 0.00 0.00 0.00 4.00
1705 17600 3.853671 GTGATTTATTTCGCCTGTGCTTG 59.146 43.478 0.00 0.00 34.43 4.01
1752 17651 0.179129 GAGCATCCCAATGGTTTGCG 60.179 55.000 15.10 0.00 43.48 4.85
1809 17708 4.332543 TGCTTTGCTTATCCACAAGTATCG 59.667 41.667 0.00 0.00 0.00 2.92
1844 17743 2.749441 GAGCAGCTTGGTCCTGGC 60.749 66.667 0.00 0.00 38.84 4.85
1872 17771 5.627499 TGATGGTGTTACTCTGAAAATGC 57.373 39.130 0.00 0.00 0.00 3.56
1873 17772 4.458989 TGATGGTGTTACTCTGAAAATGCC 59.541 41.667 0.00 0.00 0.00 4.40
1874 17773 3.826524 TGGTGTTACTCTGAAAATGCCA 58.173 40.909 0.00 0.00 0.00 4.92
1876 17775 4.278170 TGGTGTTACTCTGAAAATGCCAAG 59.722 41.667 0.00 0.00 0.00 3.61
1877 17776 4.229876 GTGTTACTCTGAAAATGCCAAGC 58.770 43.478 0.00 0.00 0.00 4.01
1878 17777 4.022849 GTGTTACTCTGAAAATGCCAAGCT 60.023 41.667 0.00 0.00 0.00 3.74
1879 17778 4.216257 TGTTACTCTGAAAATGCCAAGCTC 59.784 41.667 0.00 0.00 0.00 4.09
1951 17856 5.128335 ACAAGATGATGTGCTAGAGACATGA 59.872 40.000 11.44 5.07 34.10 3.07
1995 17904 2.898729 ATGGTCTTCAGGCTGTATCG 57.101 50.000 15.27 1.81 0.00 2.92
2108 18019 7.778382 GGTTTTGGTGGTCTGATATTTATACCT 59.222 37.037 0.00 0.00 0.00 3.08
2152 18070 4.872552 TGAAACCATCAAGCAGAAAGCCC 61.873 47.826 0.00 0.00 37.20 5.19
2203 18128 5.784177 GAACAGTCTAAGTTCATCTGTGGA 58.216 41.667 0.00 0.00 43.64 4.02
2207 18132 6.876257 ACAGTCTAAGTTCATCTGTGGATTTC 59.124 38.462 0.00 0.00 37.85 2.17
2208 18133 7.102346 CAGTCTAAGTTCATCTGTGGATTTCT 58.898 38.462 0.00 0.00 0.00 2.52
2209 18134 7.064371 CAGTCTAAGTTCATCTGTGGATTTCTG 59.936 40.741 0.00 0.00 0.00 3.02
2210 18135 7.038729 AGTCTAAGTTCATCTGTGGATTTCTGA 60.039 37.037 0.00 0.00 0.00 3.27
2211 18136 7.768120 GTCTAAGTTCATCTGTGGATTTCTGAT 59.232 37.037 0.00 0.00 0.00 2.90
2212 18137 8.981659 TCTAAGTTCATCTGTGGATTTCTGATA 58.018 33.333 0.00 0.00 0.00 2.15
2213 18138 9.258826 CTAAGTTCATCTGTGGATTTCTGATAG 57.741 37.037 0.00 0.00 0.00 2.08
2214 18139 6.054295 AGTTCATCTGTGGATTTCTGATAGC 58.946 40.000 0.00 0.00 0.00 2.97
2215 18140 5.883685 TCATCTGTGGATTTCTGATAGCT 57.116 39.130 0.00 0.00 0.00 3.32
2216 18141 5.608449 TCATCTGTGGATTTCTGATAGCTG 58.392 41.667 0.00 0.00 0.00 4.24
2217 18142 5.129980 TCATCTGTGGATTTCTGATAGCTGT 59.870 40.000 0.00 0.00 0.00 4.40
2218 18143 4.763073 TCTGTGGATTTCTGATAGCTGTG 58.237 43.478 0.00 0.00 0.00 3.66
2219 18144 3.875727 CTGTGGATTTCTGATAGCTGTGG 59.124 47.826 0.00 0.00 0.00 4.17
2220 18145 2.615912 GTGGATTTCTGATAGCTGTGGC 59.384 50.000 0.00 0.00 39.06 5.01
2221 18146 1.869767 GGATTTCTGATAGCTGTGGCG 59.130 52.381 0.00 0.00 44.37 5.69
2222 18147 2.483714 GGATTTCTGATAGCTGTGGCGA 60.484 50.000 0.00 0.00 44.37 5.54
2223 18148 2.988010 TTTCTGATAGCTGTGGCGAT 57.012 45.000 0.00 0.00 44.37 4.58
2224 18149 2.515926 TTCTGATAGCTGTGGCGATC 57.484 50.000 0.00 4.59 46.14 3.69
2225 18150 1.697284 TCTGATAGCTGTGGCGATCT 58.303 50.000 0.00 0.00 46.12 2.75
2226 18151 1.339291 TCTGATAGCTGTGGCGATCTG 59.661 52.381 0.00 10.55 46.12 2.90
2228 18153 1.756538 TGATAGCTGTGGCGATCTGAA 59.243 47.619 0.00 0.00 46.12 3.02
2229 18154 2.366590 TGATAGCTGTGGCGATCTGAAT 59.633 45.455 0.00 0.00 46.12 2.57
2230 18155 2.515926 TAGCTGTGGCGATCTGAATC 57.484 50.000 0.00 0.00 44.37 2.52
2231 18156 0.829333 AGCTGTGGCGATCTGAATCT 59.171 50.000 0.00 0.00 44.37 2.40
2233 18158 1.579698 CTGTGGCGATCTGAATCTGG 58.420 55.000 0.00 0.00 0.00 3.86
2235 18160 1.146930 TGGCGATCTGAATCTGGGC 59.853 57.895 0.00 0.00 0.00 5.36
2237 18162 1.162800 GGCGATCTGAATCTGGGCAC 61.163 60.000 0.00 0.00 0.00 5.01
2238 18163 0.462581 GCGATCTGAATCTGGGCACA 60.463 55.000 0.00 0.00 0.00 4.57
2240 18165 2.548707 GCGATCTGAATCTGGGCACATA 60.549 50.000 0.00 0.00 0.00 2.29
2241 18166 3.867600 GCGATCTGAATCTGGGCACATAT 60.868 47.826 0.00 0.00 0.00 1.78
2242 18167 3.683340 CGATCTGAATCTGGGCACATATG 59.317 47.826 0.00 0.00 0.00 1.78
2244 18169 4.077300 TCTGAATCTGGGCACATATGTC 57.923 45.455 5.07 1.16 0.00 3.06
2245 18170 3.455543 TCTGAATCTGGGCACATATGTCA 59.544 43.478 5.07 0.21 29.15 3.58
2246 18171 4.080413 TCTGAATCTGGGCACATATGTCAA 60.080 41.667 5.07 0.00 29.15 3.18
2247 18172 4.201657 TGAATCTGGGCACATATGTCAAG 58.798 43.478 5.07 0.00 32.06 3.02
2248 18173 2.042686 TCTGGGCACATATGTCAAGC 57.957 50.000 5.07 6.75 30.71 4.01
2250 18175 1.945394 CTGGGCACATATGTCAAGCTC 59.055 52.381 5.07 7.49 29.15 4.09
2251 18176 1.312815 GGGCACATATGTCAAGCTCC 58.687 55.000 5.07 6.86 29.15 4.70
2252 18177 1.133976 GGGCACATATGTCAAGCTCCT 60.134 52.381 5.07 0.00 29.15 3.69
2255 18180 3.561725 GGCACATATGTCAAGCTCCTAAC 59.438 47.826 5.07 0.00 0.00 2.34
2256 18181 3.246226 GCACATATGTCAAGCTCCTAACG 59.754 47.826 5.07 0.00 0.00 3.18
2257 18182 4.682787 CACATATGTCAAGCTCCTAACGA 58.317 43.478 5.07 0.00 0.00 3.85
2258 18183 4.504461 CACATATGTCAAGCTCCTAACGAC 59.496 45.833 5.07 0.00 0.00 4.34
2259 18184 2.279582 ATGTCAAGCTCCTAACGACG 57.720 50.000 0.00 0.00 0.00 5.12
2260 18185 0.956633 TGTCAAGCTCCTAACGACGT 59.043 50.000 0.00 0.00 0.00 4.34
2261 18186 1.338973 TGTCAAGCTCCTAACGACGTT 59.661 47.619 18.47 18.47 0.00 3.99
2262 18187 2.553602 TGTCAAGCTCCTAACGACGTTA 59.446 45.455 18.74 18.74 0.00 3.18
2263 18188 3.004629 TGTCAAGCTCCTAACGACGTTAA 59.995 43.478 20.08 6.90 0.00 2.01
2264 18189 3.983344 GTCAAGCTCCTAACGACGTTAAA 59.017 43.478 20.08 11.09 0.00 1.52
2265 18190 4.089636 GTCAAGCTCCTAACGACGTTAAAG 59.910 45.833 20.08 19.22 0.00 1.85
2266 18191 2.603953 AGCTCCTAACGACGTTAAAGC 58.396 47.619 29.51 29.51 37.24 3.51
2267 18192 2.029649 AGCTCCTAACGACGTTAAAGCA 60.030 45.455 33.58 15.26 38.35 3.91
2268 18193 2.733026 GCTCCTAACGACGTTAAAGCAA 59.267 45.455 30.60 12.16 37.10 3.91
2269 18194 3.370061 GCTCCTAACGACGTTAAAGCAAT 59.630 43.478 30.60 9.10 37.10 3.56
2270 18195 4.724036 GCTCCTAACGACGTTAAAGCAATG 60.724 45.833 30.60 16.70 37.10 2.82
2271 18196 4.309099 TCCTAACGACGTTAAAGCAATGT 58.691 39.130 20.08 0.00 39.14 2.71
2272 18197 4.386652 TCCTAACGACGTTAAAGCAATGTC 59.613 41.667 20.08 0.27 45.86 3.06
2275 18200 1.878373 GACGTTAAAGCAATGTCGCC 58.122 50.000 0.00 0.00 41.94 5.54
2276 18201 1.195900 GACGTTAAAGCAATGTCGCCA 59.804 47.619 0.00 0.00 41.94 5.69
2277 18202 1.810151 ACGTTAAAGCAATGTCGCCAT 59.190 42.857 0.00 0.00 30.09 4.40
2278 18203 2.176369 CGTTAAAGCAATGTCGCCATG 58.824 47.619 0.00 0.00 0.00 3.66
2279 18204 2.159585 CGTTAAAGCAATGTCGCCATGA 60.160 45.455 0.00 0.00 0.00 3.07
2280 18205 3.487376 CGTTAAAGCAATGTCGCCATGAT 60.487 43.478 0.00 0.00 0.00 2.45
2281 18206 4.260579 CGTTAAAGCAATGTCGCCATGATA 60.261 41.667 0.00 0.00 0.00 2.15
2282 18207 3.976793 AAAGCAATGTCGCCATGATAG 57.023 42.857 0.00 0.00 0.00 2.08
2283 18208 2.627515 AGCAATGTCGCCATGATAGT 57.372 45.000 0.00 0.00 0.00 2.12
2284 18209 2.487934 AGCAATGTCGCCATGATAGTC 58.512 47.619 0.00 0.00 0.00 2.59
2285 18210 1.532868 GCAATGTCGCCATGATAGTCC 59.467 52.381 0.00 0.00 0.00 3.85
2286 18211 2.837498 CAATGTCGCCATGATAGTCCA 58.163 47.619 0.00 0.00 0.00 4.02
2287 18212 2.804527 CAATGTCGCCATGATAGTCCAG 59.195 50.000 0.00 0.00 0.00 3.86
2288 18213 0.752658 TGTCGCCATGATAGTCCAGG 59.247 55.000 0.00 0.00 0.00 4.45
2289 18214 0.601311 GTCGCCATGATAGTCCAGGC 60.601 60.000 0.00 0.00 41.86 4.85
2290 18215 4.368391 GCCATGATAGTCCAGGCG 57.632 61.111 0.00 0.00 35.42 5.52
2291 18216 1.302033 GCCATGATAGTCCAGGCGG 60.302 63.158 0.00 0.00 35.42 6.13
2292 18217 1.372683 CCATGATAGTCCAGGCGGG 59.627 63.158 0.00 0.00 38.37 6.13
2293 18218 1.121407 CCATGATAGTCCAGGCGGGA 61.121 60.000 0.91 0.91 45.89 5.14
2300 18225 3.003173 TCCAGGCGGGAGGTTGAG 61.003 66.667 0.91 0.00 42.15 3.02
2301 18226 4.785453 CCAGGCGGGAGGTTGAGC 62.785 72.222 0.00 0.00 40.01 4.26
2307 18232 4.329545 GGGAGGTTGAGCCGTGCA 62.330 66.667 0.00 0.00 43.70 4.57
2308 18233 2.045926 GGAGGTTGAGCCGTGCAT 60.046 61.111 0.00 0.00 43.70 3.96
2309 18234 1.675641 GGAGGTTGAGCCGTGCATT 60.676 57.895 0.00 0.00 43.70 3.56
2310 18235 1.503542 GAGGTTGAGCCGTGCATTG 59.496 57.895 0.00 0.00 43.70 2.82
2311 18236 0.955428 GAGGTTGAGCCGTGCATTGA 60.955 55.000 0.00 0.00 43.70 2.57
2312 18237 1.210155 GGTTGAGCCGTGCATTGAC 59.790 57.895 0.00 0.00 0.00 3.18
2313 18238 1.514678 GGTTGAGCCGTGCATTGACA 61.515 55.000 0.00 0.00 0.00 3.58
2314 18239 0.385974 GTTGAGCCGTGCATTGACAC 60.386 55.000 0.00 0.00 37.19 3.67
2315 18240 0.534877 TTGAGCCGTGCATTGACACT 60.535 50.000 0.00 0.00 38.45 3.55
2316 18241 0.320050 TGAGCCGTGCATTGACACTA 59.680 50.000 0.00 0.00 38.45 2.74
2317 18242 1.270571 TGAGCCGTGCATTGACACTAA 60.271 47.619 0.00 0.00 38.45 2.24
2318 18243 1.394917 GAGCCGTGCATTGACACTAAG 59.605 52.381 0.00 1.52 38.45 2.18
2319 18244 0.447801 GCCGTGCATTGACACTAAGG 59.552 55.000 0.00 5.17 38.45 2.69
2320 18245 1.086696 CCGTGCATTGACACTAAGGG 58.913 55.000 0.00 1.35 38.45 3.95
2321 18246 1.338674 CCGTGCATTGACACTAAGGGA 60.339 52.381 0.00 0.00 38.45 4.20
2322 18247 2.002586 CGTGCATTGACACTAAGGGAG 58.997 52.381 0.00 0.00 38.45 4.30
2323 18248 2.359900 GTGCATTGACACTAAGGGAGG 58.640 52.381 0.00 0.00 37.58 4.30
2324 18249 2.027192 GTGCATTGACACTAAGGGAGGA 60.027 50.000 0.00 0.00 37.58 3.71
2325 18250 2.642311 TGCATTGACACTAAGGGAGGAA 59.358 45.455 0.00 0.00 0.00 3.36
2326 18251 3.274288 GCATTGACACTAAGGGAGGAAG 58.726 50.000 0.00 0.00 0.00 3.46
2327 18252 3.274288 CATTGACACTAAGGGAGGAAGC 58.726 50.000 0.00 0.00 0.00 3.86
2328 18253 2.024176 TGACACTAAGGGAGGAAGCA 57.976 50.000 0.00 0.00 0.00 3.91
2329 18254 1.623811 TGACACTAAGGGAGGAAGCAC 59.376 52.381 0.00 0.00 0.00 4.40
2330 18255 0.984995 ACACTAAGGGAGGAAGCACC 59.015 55.000 0.00 0.00 39.35 5.01
2331 18256 0.984230 CACTAAGGGAGGAAGCACCA 59.016 55.000 2.96 0.00 42.04 4.17
2332 18257 1.351017 CACTAAGGGAGGAAGCACCAA 59.649 52.381 2.96 0.00 42.04 3.67
2333 18258 2.062636 ACTAAGGGAGGAAGCACCAAA 58.937 47.619 2.96 0.00 42.04 3.28
2334 18259 2.649816 ACTAAGGGAGGAAGCACCAAAT 59.350 45.455 2.96 0.00 42.04 2.32
2335 18260 3.850173 ACTAAGGGAGGAAGCACCAAATA 59.150 43.478 2.96 0.00 42.04 1.40
2336 18261 3.825908 AAGGGAGGAAGCACCAAATAA 57.174 42.857 2.96 0.00 42.04 1.40
2337 18262 3.087370 AGGGAGGAAGCACCAAATAAC 57.913 47.619 2.96 0.00 42.04 1.89
2338 18263 2.100197 GGGAGGAAGCACCAAATAACC 58.900 52.381 2.96 0.00 42.04 2.85
2339 18264 2.556559 GGGAGGAAGCACCAAATAACCA 60.557 50.000 2.96 0.00 42.04 3.67
2340 18265 3.161866 GGAGGAAGCACCAAATAACCAA 58.838 45.455 2.96 0.00 42.04 3.67
2341 18266 3.769300 GGAGGAAGCACCAAATAACCAAT 59.231 43.478 2.96 0.00 42.04 3.16
2342 18267 4.222810 GGAGGAAGCACCAAATAACCAATT 59.777 41.667 2.96 0.00 42.04 2.32
2343 18268 5.279960 GGAGGAAGCACCAAATAACCAATTT 60.280 40.000 2.96 0.00 42.04 1.82
2344 18269 6.071051 GGAGGAAGCACCAAATAACCAATTTA 60.071 38.462 2.96 0.00 42.04 1.40
2345 18270 7.364673 GGAGGAAGCACCAAATAACCAATTTAT 60.365 37.037 2.96 0.00 42.04 1.40
2346 18271 8.602472 AGGAAGCACCAAATAACCAATTTATA 57.398 30.769 2.96 0.00 42.04 0.98
2347 18272 9.041354 AGGAAGCACCAAATAACCAATTTATAA 57.959 29.630 2.96 0.00 42.04 0.98
2348 18273 9.830975 GGAAGCACCAAATAACCAATTTATAAT 57.169 29.630 0.00 0.00 35.54 1.28
2374 18299 7.984422 ACAATGTCAGTCAAATATGTTGAGA 57.016 32.000 0.00 0.00 0.00 3.27
2375 18300 8.394971 ACAATGTCAGTCAAATATGTTGAGAA 57.605 30.769 0.00 0.00 0.00 2.87
2376 18301 8.849168 ACAATGTCAGTCAAATATGTTGAGAAA 58.151 29.630 0.00 0.00 0.00 2.52
2379 18304 9.683069 ATGTCAGTCAAATATGTTGAGAAAAAC 57.317 29.630 1.96 0.00 0.00 2.43
2380 18305 8.681806 TGTCAGTCAAATATGTTGAGAAAAACA 58.318 29.630 0.00 0.00 43.82 2.83
2391 18316 6.795399 TGTTGAGAAAAACATTCTTCTGACC 58.205 36.000 0.00 0.00 35.16 4.02
2392 18317 6.183360 TGTTGAGAAAAACATTCTTCTGACCC 60.183 38.462 0.00 0.00 35.16 4.46
2393 18318 4.515191 TGAGAAAAACATTCTTCTGACCCG 59.485 41.667 0.00 0.00 32.01 5.28
2395 18320 4.757149 AGAAAAACATTCTTCTGACCCGAG 59.243 41.667 0.00 0.00 30.67 4.63
2396 18321 2.770164 AACATTCTTCTGACCCGAGG 57.230 50.000 0.00 0.00 0.00 4.63
2397 18322 1.938585 ACATTCTTCTGACCCGAGGA 58.061 50.000 0.00 0.00 0.00 3.71
2398 18323 2.257207 ACATTCTTCTGACCCGAGGAA 58.743 47.619 0.00 0.00 34.20 3.36
2400 18325 3.072476 ACATTCTTCTGACCCGAGGAAAA 59.928 43.478 0.00 0.00 33.54 2.29
2401 18326 3.849563 TTCTTCTGACCCGAGGAAAAA 57.150 42.857 0.00 0.00 0.00 1.94
2402 18327 4.367039 TTCTTCTGACCCGAGGAAAAAT 57.633 40.909 0.00 0.00 0.00 1.82
2403 18328 3.939066 TCTTCTGACCCGAGGAAAAATC 58.061 45.455 0.00 0.00 0.00 2.17
2405 18330 0.727398 CTGACCCGAGGAAAAATCGC 59.273 55.000 0.00 0.00 38.84 4.58
2406 18331 0.675522 TGACCCGAGGAAAAATCGCC 60.676 55.000 0.00 0.00 38.84 5.54
2407 18332 1.702491 GACCCGAGGAAAAATCGCCG 61.702 60.000 0.00 0.00 38.84 6.46
2408 18333 1.448893 CCCGAGGAAAAATCGCCGA 60.449 57.895 0.00 0.00 38.84 5.54
2411 18336 0.304705 CGAGGAAAAATCGCCGATGG 59.695 55.000 0.00 0.00 32.81 3.51
2412 18337 1.379527 GAGGAAAAATCGCCGATGGT 58.620 50.000 0.00 0.00 0.00 3.55
2414 18339 2.544267 GAGGAAAAATCGCCGATGGTAG 59.456 50.000 0.00 0.00 0.00 3.18
2416 18341 3.139077 GGAAAAATCGCCGATGGTAGAT 58.861 45.455 0.00 0.00 0.00 1.98
2417 18342 3.058914 GGAAAAATCGCCGATGGTAGATG 60.059 47.826 0.00 0.00 0.00 2.90
2419 18344 1.048601 AATCGCCGATGGTAGATGGT 58.951 50.000 0.00 0.00 0.00 3.55
2420 18345 1.919240 ATCGCCGATGGTAGATGGTA 58.081 50.000 0.00 0.00 0.00 3.25
2421 18346 0.956633 TCGCCGATGGTAGATGGTAC 59.043 55.000 0.00 0.00 0.00 3.34
2440 18365 6.726379 TGGTACACAATATCTTGGAATTCCA 58.274 36.000 23.63 23.63 45.94 3.53
2457 18382 9.902684 TGGAATTCCAAATATTTTACATGCATT 57.097 25.926 25.13 0.00 44.35 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 0.242555 CCGGCACCACCAACAATTAC 59.757 55.000 0.00 0.00 39.03 1.89
4 5 0.896019 CCCGGCACCACCAACAATTA 60.896 55.000 0.00 0.00 39.03 1.40
5 6 2.206536 CCCGGCACCACCAACAATT 61.207 57.895 0.00 0.00 39.03 2.32
7 8 4.130554 ACCCGGCACCACCAACAA 62.131 61.111 0.00 0.00 39.03 2.83
9 10 4.887190 ACACCCGGCACCACCAAC 62.887 66.667 0.00 0.00 39.03 3.77
11 12 4.885270 CAACACCCGGCACCACCA 62.885 66.667 0.00 0.00 39.03 4.17
13 14 4.887190 ACCAACACCCGGCACCAC 62.887 66.667 0.00 0.00 0.00 4.16
19 20 4.636435 AAGGCGACCAACACCCGG 62.636 66.667 0.00 0.00 0.00 5.73
20 21 3.353836 CAAGGCGACCAACACCCG 61.354 66.667 0.00 0.00 0.00 5.28
21 22 2.203294 ACAAGGCGACCAACACCC 60.203 61.111 0.00 0.00 0.00 4.61
23 24 2.935955 CGACAAGGCGACCAACAC 59.064 61.111 0.00 0.00 0.00 3.32
24 25 2.970324 GCGACAAGGCGACCAACA 60.970 61.111 0.00 0.00 0.00 3.33
42 43 1.273327 GTTTCATGCTTTCCCAGGTGG 59.727 52.381 0.00 0.00 0.00 4.61
43 44 1.273327 GGTTTCATGCTTTCCCAGGTG 59.727 52.381 0.00 0.00 0.00 4.00
44 45 1.133199 TGGTTTCATGCTTTCCCAGGT 60.133 47.619 0.00 0.00 0.00 4.00
46 47 1.068333 CGTGGTTTCATGCTTTCCCAG 60.068 52.381 0.00 0.00 0.00 4.45
47 48 0.958091 CGTGGTTTCATGCTTTCCCA 59.042 50.000 0.00 0.00 0.00 4.37
48 49 0.958822 ACGTGGTTTCATGCTTTCCC 59.041 50.000 0.00 0.00 33.32 3.97
49 50 1.399727 CGACGTGGTTTCATGCTTTCC 60.400 52.381 0.00 0.00 33.32 3.13
50 51 1.263217 ACGACGTGGTTTCATGCTTTC 59.737 47.619 0.00 0.00 33.32 2.62
51 52 1.002900 CACGACGTGGTTTCATGCTTT 60.003 47.619 20.26 0.00 33.32 3.51
57 58 1.225376 GGATGCACGACGTGGTTTCA 61.225 55.000 27.86 17.66 33.64 2.69
58 59 1.495951 GGATGCACGACGTGGTTTC 59.504 57.895 27.86 12.62 33.64 2.78
59 60 2.314647 CGGATGCACGACGTGGTTT 61.315 57.895 27.86 2.73 33.64 3.27
60 61 2.736995 CGGATGCACGACGTGGTT 60.737 61.111 27.86 3.05 33.64 3.67
61 62 3.986006 ACGGATGCACGACGTGGT 61.986 61.111 27.86 14.63 39.64 4.16
64 65 4.735132 CCCACGGATGCACGACGT 62.735 66.667 3.48 5.05 42.17 4.34
65 66 3.716539 ATCCCACGGATGCACGACG 62.717 63.158 3.48 4.39 41.43 5.12
66 67 2.186903 ATCCCACGGATGCACGAC 59.813 61.111 3.48 0.00 41.43 4.34
75 76 2.203252 CTCCATGGCATCCCACGG 60.203 66.667 6.96 0.00 45.93 4.94
76 77 2.903855 GCTCCATGGCATCCCACG 60.904 66.667 6.96 0.00 45.77 4.94
80 81 2.124024 TGCAGCTCCATGGCATCC 60.124 61.111 6.96 0.00 31.58 3.51
81 82 2.194212 CCTGCAGCTCCATGGCATC 61.194 63.158 8.66 0.00 36.87 3.91
83 84 3.654143 ACCTGCAGCTCCATGGCA 61.654 61.111 8.66 0.00 35.96 4.92
84 85 3.138798 CACCTGCAGCTCCATGGC 61.139 66.667 8.66 0.00 0.00 4.40
85 86 3.138798 GCACCTGCAGCTCCATGG 61.139 66.667 8.66 4.97 41.59 3.66
86 87 3.138798 GGCACCTGCAGCTCCATG 61.139 66.667 8.66 2.07 44.36 3.66
142 143 1.810412 GCTCATGAATGGTCCGGGTAC 60.810 57.143 0.00 0.00 0.00 3.34
144 145 1.224592 GCTCATGAATGGTCCGGGT 59.775 57.895 0.00 0.00 0.00 5.28
147 148 1.482621 CGTCGCTCATGAATGGTCCG 61.483 60.000 0.00 0.00 0.00 4.79
152 153 2.120232 GTACTCCGTCGCTCATGAATG 58.880 52.381 0.00 0.00 0.00 2.67
155 156 1.135489 GTTGTACTCCGTCGCTCATGA 60.135 52.381 0.00 0.00 0.00 3.07
157 158 0.179171 CGTTGTACTCCGTCGCTCAT 60.179 55.000 0.00 0.00 0.00 2.90
195 196 2.809601 CTCGTCAACGGCGAAGGG 60.810 66.667 16.62 0.00 37.93 3.95
196 197 3.479269 GCTCGTCAACGGCGAAGG 61.479 66.667 16.62 4.43 37.93 3.46
201 202 2.202623 ATCGAGCTCGTCAACGGC 60.203 61.111 33.33 5.43 40.80 5.68
206 207 1.803289 CAGACCATCGAGCTCGTCA 59.197 57.895 33.33 17.83 40.80 4.35
209 210 1.588403 CTGCAGACCATCGAGCTCG 60.588 63.158 30.03 30.03 41.45 5.03
236 237 3.589654 TTTGCTCCGCCGACTGAGG 62.590 63.158 0.00 0.00 0.00 3.86
245 246 1.894282 GCCCTATCCTTTGCTCCGC 60.894 63.158 0.00 0.00 0.00 5.54
246 247 1.595382 CGCCCTATCCTTTGCTCCG 60.595 63.158 0.00 0.00 0.00 4.63
248 249 1.227973 CCCGCCCTATCCTTTGCTC 60.228 63.158 0.00 0.00 0.00 4.26
252 253 0.551396 CTTTCCCCGCCCTATCCTTT 59.449 55.000 0.00 0.00 0.00 3.11
254 255 1.770518 CCTTTCCCCGCCCTATCCT 60.771 63.158 0.00 0.00 0.00 3.24
266 267 2.840651 TCATCTCCTCACCTTCCTTTCC 59.159 50.000 0.00 0.00 0.00 3.13
298 299 6.825213 AGTCAACCGTACTTTCTAAACCTTTT 59.175 34.615 0.00 0.00 0.00 2.27
304 305 5.539955 ACCCTAGTCAACCGTACTTTCTAAA 59.460 40.000 0.00 0.00 0.00 1.85
306 307 4.666512 ACCCTAGTCAACCGTACTTTCTA 58.333 43.478 0.00 0.00 0.00 2.10
353 354 2.225394 GCCATCCTCACCTCTATCCCTA 60.225 54.545 0.00 0.00 0.00 3.53
354 355 1.484065 GCCATCCTCACCTCTATCCCT 60.484 57.143 0.00 0.00 0.00 4.20
359 360 2.323599 CTCATGCCATCCTCACCTCTA 58.676 52.381 0.00 0.00 0.00 2.43
361 362 0.534652 GCTCATGCCATCCTCACCTC 60.535 60.000 0.00 0.00 0.00 3.85
362 363 1.530771 GCTCATGCCATCCTCACCT 59.469 57.895 0.00 0.00 0.00 4.00
382 383 0.035739 ACGTCAAACCAACCCGCTAT 59.964 50.000 0.00 0.00 0.00 2.97
386 387 1.503818 CCTCACGTCAAACCAACCCG 61.504 60.000 0.00 0.00 0.00 5.28
389 390 0.580104 CGTCCTCACGTCAAACCAAC 59.420 55.000 0.00 0.00 41.42 3.77
395 396 1.361271 GACACCGTCCTCACGTCAA 59.639 57.895 0.00 0.00 45.17 3.18
414 415 1.502163 GAAAGATCCAGATGCGCCCG 61.502 60.000 4.18 0.00 0.00 6.13
432 433 4.149511 TCATATGTGAGGCGAATTTGGA 57.850 40.909 1.90 0.00 0.00 3.53
439 440 0.104120 CCGGTTCATATGTGAGGCGA 59.896 55.000 1.90 0.00 35.39 5.54
442 443 3.557054 CCATACCCGGTTCATATGTGAGG 60.557 52.174 0.00 2.88 35.39 3.86
447 448 1.702957 ACCCCATACCCGGTTCATATG 59.297 52.381 0.00 0.00 0.00 1.78
480 482 7.633553 GCCTTCTCAAACAAAGCCCAAATATAT 60.634 37.037 0.00 0.00 0.00 0.86
481 483 6.350949 GCCTTCTCAAACAAAGCCCAAATATA 60.351 38.462 0.00 0.00 0.00 0.86
487 491 1.039856 GCCTTCTCAAACAAAGCCCA 58.960 50.000 0.00 0.00 0.00 5.36
528 539 0.977627 ATCGGCCATCACTGTCTGGA 60.978 55.000 2.24 0.00 34.24 3.86
529 540 0.531532 GATCGGCCATCACTGTCTGG 60.532 60.000 2.24 2.28 35.53 3.86
530 541 0.873312 CGATCGGCCATCACTGTCTG 60.873 60.000 7.38 0.00 0.00 3.51
531 542 1.037579 TCGATCGGCCATCACTGTCT 61.038 55.000 16.41 0.00 0.00 3.41
536 547 3.032609 CGCTCGATCGGCCATCAC 61.033 66.667 16.41 0.00 0.00 3.06
537 548 2.572095 AAACGCTCGATCGGCCATCA 62.572 55.000 16.41 0.00 0.00 3.07
539 550 2.173669 CAAACGCTCGATCGGCCAT 61.174 57.895 16.41 4.89 0.00 4.40
540 551 2.813474 CAAACGCTCGATCGGCCA 60.813 61.111 16.41 0.00 0.00 5.36
581 603 7.495606 GCCTTCCCAAAAATGTATCATTAAAGG 59.504 37.037 0.00 0.00 0.00 3.11
600 622 0.555769 TAACCCATGATGGCCTTCCC 59.444 55.000 15.62 0.00 35.79 3.97
601 623 1.479389 CCTAACCCATGATGGCCTTCC 60.479 57.143 15.62 0.00 35.79 3.46
657 683 0.677731 TTGGATTTCGCAGGCTCAGG 60.678 55.000 0.00 0.00 0.00 3.86
995 3389 4.883354 CCTTGGGGGCCATCGCTC 62.883 72.222 4.39 0.00 31.53 5.03
1197 12342 5.660629 AGATGTAGATCTTGTACGTCTCG 57.339 43.478 11.52 0.00 41.07 4.04
1249 12394 1.144936 CCTTGGAGGAGATGCCGAC 59.855 63.158 0.00 0.00 43.43 4.79
1338 12483 1.234615 TGGGCTTCTTGTTGTAGCGC 61.235 55.000 0.00 0.00 46.73 5.92
1509 17061 7.771826 ACAAAGTAAAGTAACAGAACCAGCTAA 59.228 33.333 0.00 0.00 0.00 3.09
1530 17091 1.528586 CCAGAGTCGACAAGCACAAAG 59.471 52.381 19.50 0.00 0.00 2.77
1533 17094 0.464036 AACCAGAGTCGACAAGCACA 59.536 50.000 19.50 0.00 0.00 4.57
1580 17142 2.590821 CATCAATCAACTCCCCATCCC 58.409 52.381 0.00 0.00 0.00 3.85
1611 17173 1.471684 CCAAAGAGGCAACAGAGCATC 59.528 52.381 0.00 0.00 45.01 3.91
1700 17595 1.985473 ATCACAGCAGGAAACAAGCA 58.015 45.000 0.00 0.00 36.26 3.91
1705 17600 4.946784 AACGATAATCACAGCAGGAAAC 57.053 40.909 0.00 0.00 0.00 2.78
1768 17667 6.019881 GCAAAGCAAACTACTACCAAAACAAG 60.020 38.462 0.00 0.00 0.00 3.16
1809 17708 2.369394 CTCCAGCCTAACCAATTGACC 58.631 52.381 7.12 0.00 0.00 4.02
1843 17742 4.130118 CAGAGTAACACCATCAATAGGGC 58.870 47.826 0.00 0.00 0.00 5.19
1844 17743 5.614324 TCAGAGTAACACCATCAATAGGG 57.386 43.478 0.00 0.00 0.00 3.53
1872 17771 6.036953 CAGCTAGTCTAATTTTCTGAGCTTGG 59.963 42.308 0.00 0.00 36.92 3.61
1873 17772 6.593382 ACAGCTAGTCTAATTTTCTGAGCTTG 59.407 38.462 0.00 0.00 36.92 4.01
1874 17773 6.706295 ACAGCTAGTCTAATTTTCTGAGCTT 58.294 36.000 0.00 0.00 36.92 3.74
1876 17775 5.522097 GGACAGCTAGTCTAATTTTCTGAGC 59.478 44.000 13.59 0.00 46.72 4.26
1877 17776 6.634805 TGGACAGCTAGTCTAATTTTCTGAG 58.365 40.000 13.59 0.00 46.72 3.35
1878 17777 6.605471 TGGACAGCTAGTCTAATTTTCTGA 57.395 37.500 13.59 0.00 46.72 3.27
1995 17904 6.037940 TCTGAATTGCTGCAATATCTGAAGAC 59.962 38.462 26.48 10.81 31.15 3.01
2083 17994 8.621286 CAGGTATAAATATCAGACCACCAAAAC 58.379 37.037 4.44 0.00 32.28 2.43
2108 18019 3.107601 GGATAGCCTCCATATGCCTACA 58.892 50.000 0.00 0.00 44.26 2.74
2152 18070 1.153939 CGACAGAGAACAGGAGCCG 60.154 63.158 0.00 0.00 0.00 5.52
2203 18128 2.988010 TCGCCACAGCTATCAGAAAT 57.012 45.000 0.00 0.00 36.60 2.17
2207 18132 1.339291 TCAGATCGCCACAGCTATCAG 59.661 52.381 2.92 0.00 42.25 2.90
2208 18133 1.402787 TCAGATCGCCACAGCTATCA 58.597 50.000 2.92 0.00 42.25 2.15
2209 18134 2.515926 TTCAGATCGCCACAGCTATC 57.484 50.000 0.00 0.00 40.59 2.08
2210 18135 2.632028 AGATTCAGATCGCCACAGCTAT 59.368 45.455 0.00 0.00 37.37 2.97
2211 18136 2.034878 AGATTCAGATCGCCACAGCTA 58.965 47.619 0.00 0.00 37.37 3.32
2212 18137 0.829333 AGATTCAGATCGCCACAGCT 59.171 50.000 0.00 0.00 37.37 4.24
2213 18138 0.935898 CAGATTCAGATCGCCACAGC 59.064 55.000 0.00 0.00 37.37 4.40
2214 18139 1.579698 CCAGATTCAGATCGCCACAG 58.420 55.000 0.00 0.00 37.37 3.66
2215 18140 0.178767 CCCAGATTCAGATCGCCACA 59.821 55.000 0.00 0.00 37.37 4.17
2216 18141 1.162800 GCCCAGATTCAGATCGCCAC 61.163 60.000 0.00 0.00 37.37 5.01
2217 18142 1.146930 GCCCAGATTCAGATCGCCA 59.853 57.895 0.00 0.00 37.37 5.69
2218 18143 1.146930 TGCCCAGATTCAGATCGCC 59.853 57.895 0.00 0.00 37.37 5.54
2219 18144 0.462581 TGTGCCCAGATTCAGATCGC 60.463 55.000 0.00 0.00 37.37 4.58
2220 18145 2.251409 ATGTGCCCAGATTCAGATCG 57.749 50.000 0.00 0.00 37.37 3.69
2221 18146 4.649692 ACATATGTGCCCAGATTCAGATC 58.350 43.478 7.78 0.00 0.00 2.75
2222 18147 4.103627 TGACATATGTGCCCAGATTCAGAT 59.896 41.667 14.43 0.00 0.00 2.90
2223 18148 3.455543 TGACATATGTGCCCAGATTCAGA 59.544 43.478 14.43 0.00 0.00 3.27
2224 18149 3.812262 TGACATATGTGCCCAGATTCAG 58.188 45.455 14.43 0.00 0.00 3.02
2225 18150 3.929955 TGACATATGTGCCCAGATTCA 57.070 42.857 14.43 0.00 0.00 2.57
2226 18151 3.004106 GCTTGACATATGTGCCCAGATTC 59.996 47.826 14.43 0.00 0.00 2.52
2228 18153 2.174210 AGCTTGACATATGTGCCCAGAT 59.826 45.455 14.43 0.00 0.00 2.90
2229 18154 1.561076 AGCTTGACATATGTGCCCAGA 59.439 47.619 14.43 0.00 0.00 3.86
2230 18155 1.945394 GAGCTTGACATATGTGCCCAG 59.055 52.381 14.43 2.26 0.00 4.45
2231 18156 1.408683 GGAGCTTGACATATGTGCCCA 60.409 52.381 14.43 1.99 0.00 5.36
2233 18158 2.338577 AGGAGCTTGACATATGTGCC 57.661 50.000 14.43 0.00 0.00 5.01
2235 18160 4.504461 GTCGTTAGGAGCTTGACATATGTG 59.496 45.833 14.43 0.00 0.00 3.21
2237 18162 3.731216 CGTCGTTAGGAGCTTGACATATG 59.269 47.826 0.00 0.00 0.00 1.78
2238 18163 3.380637 ACGTCGTTAGGAGCTTGACATAT 59.619 43.478 0.00 0.00 0.00 1.78
2240 18165 1.544691 ACGTCGTTAGGAGCTTGACAT 59.455 47.619 0.00 0.00 0.00 3.06
2241 18166 0.956633 ACGTCGTTAGGAGCTTGACA 59.043 50.000 0.00 0.00 0.00 3.58
2242 18167 2.061740 AACGTCGTTAGGAGCTTGAC 57.938 50.000 9.30 0.00 0.00 3.18
2244 18169 3.181533 GCTTTAACGTCGTTAGGAGCTTG 60.182 47.826 29.24 15.03 36.74 4.01
2245 18170 2.991866 GCTTTAACGTCGTTAGGAGCTT 59.008 45.455 29.24 7.48 36.74 3.74
2246 18171 2.029649 TGCTTTAACGTCGTTAGGAGCT 60.030 45.455 32.38 11.21 38.54 4.09
2247 18172 2.331194 TGCTTTAACGTCGTTAGGAGC 58.669 47.619 29.53 29.53 38.38 4.70
2248 18173 4.387862 ACATTGCTTTAACGTCGTTAGGAG 59.612 41.667 16.72 17.89 29.41 3.69
2250 18175 4.634991 GACATTGCTTTAACGTCGTTAGG 58.365 43.478 16.72 14.41 29.41 2.69
2251 18176 4.312403 CGACATTGCTTTAACGTCGTTAG 58.688 43.478 16.72 10.25 43.26 2.34
2252 18177 4.296537 CGACATTGCTTTAACGTCGTTA 57.703 40.909 13.71 13.71 43.26 3.18
2256 18181 1.195900 TGGCGACATTGCTTTAACGTC 59.804 47.619 0.00 0.00 33.40 4.34
2257 18182 1.231221 TGGCGACATTGCTTTAACGT 58.769 45.000 0.00 0.00 33.40 3.99
2270 18195 0.601311 GCCTGGACTATCATGGCGAC 60.601 60.000 0.00 0.00 33.96 5.19
2271 18196 1.748403 GCCTGGACTATCATGGCGA 59.252 57.895 0.00 0.00 33.96 5.54
2272 18197 4.368391 GCCTGGACTATCATGGCG 57.632 61.111 0.00 0.00 33.96 5.69
2273 18198 1.302033 CCGCCTGGACTATCATGGC 60.302 63.158 0.00 0.00 40.14 4.40
2274 18199 1.121407 TCCCGCCTGGACTATCATGG 61.121 60.000 0.00 0.00 38.61 3.66
2275 18200 0.319728 CTCCCGCCTGGACTATCATG 59.680 60.000 0.00 0.00 38.61 3.07
2276 18201 0.833834 CCTCCCGCCTGGACTATCAT 60.834 60.000 0.00 0.00 38.61 2.45
2277 18202 1.457643 CCTCCCGCCTGGACTATCA 60.458 63.158 0.00 0.00 38.61 2.15
2278 18203 1.049289 AACCTCCCGCCTGGACTATC 61.049 60.000 0.00 0.00 38.61 2.08
2279 18204 1.003051 AACCTCCCGCCTGGACTAT 59.997 57.895 0.00 0.00 38.61 2.12
2280 18205 1.987855 CAACCTCCCGCCTGGACTA 60.988 63.158 0.00 0.00 38.61 2.59
2281 18206 3.322466 CAACCTCCCGCCTGGACT 61.322 66.667 0.00 0.00 38.61 3.85
2282 18207 3.316573 CTCAACCTCCCGCCTGGAC 62.317 68.421 0.00 0.00 38.61 4.02
2283 18208 3.003173 CTCAACCTCCCGCCTGGA 61.003 66.667 0.00 0.00 42.41 3.86
2284 18209 4.785453 GCTCAACCTCCCGCCTGG 62.785 72.222 0.00 0.00 0.00 4.45
2285 18210 4.785453 GGCTCAACCTCCCGCCTG 62.785 72.222 0.00 0.00 39.42 4.85
2290 18215 3.628646 ATGCACGGCTCAACCTCCC 62.629 63.158 0.00 0.00 35.61 4.30
2291 18216 1.675641 AATGCACGGCTCAACCTCC 60.676 57.895 0.00 0.00 35.61 4.30
2292 18217 0.955428 TCAATGCACGGCTCAACCTC 60.955 55.000 0.00 0.00 35.61 3.85
2293 18218 1.073025 TCAATGCACGGCTCAACCT 59.927 52.632 0.00 0.00 35.61 3.50
2294 18219 1.210155 GTCAATGCACGGCTCAACC 59.790 57.895 0.00 0.00 0.00 3.77
2295 18220 0.385974 GTGTCAATGCACGGCTCAAC 60.386 55.000 0.00 0.00 0.00 3.18
2296 18221 0.534877 AGTGTCAATGCACGGCTCAA 60.535 50.000 0.00 0.00 43.61 3.02
2297 18222 0.320050 TAGTGTCAATGCACGGCTCA 59.680 50.000 0.00 0.00 43.61 4.26
2298 18223 1.394917 CTTAGTGTCAATGCACGGCTC 59.605 52.381 0.00 0.00 43.61 4.70
2299 18224 1.442769 CTTAGTGTCAATGCACGGCT 58.557 50.000 0.00 0.00 43.61 5.52
2300 18225 0.447801 CCTTAGTGTCAATGCACGGC 59.552 55.000 0.00 0.00 43.61 5.68
2301 18226 1.086696 CCCTTAGTGTCAATGCACGG 58.913 55.000 0.00 0.00 43.61 4.94
2302 18227 2.002586 CTCCCTTAGTGTCAATGCACG 58.997 52.381 0.00 0.00 43.61 5.34
2303 18228 2.027192 TCCTCCCTTAGTGTCAATGCAC 60.027 50.000 0.00 0.67 39.51 4.57
2304 18229 2.265367 TCCTCCCTTAGTGTCAATGCA 58.735 47.619 0.00 0.00 0.00 3.96
2305 18230 3.274288 CTTCCTCCCTTAGTGTCAATGC 58.726 50.000 0.00 0.00 0.00 3.56
2306 18231 3.274288 GCTTCCTCCCTTAGTGTCAATG 58.726 50.000 0.00 0.00 0.00 2.82
2307 18232 2.912956 TGCTTCCTCCCTTAGTGTCAAT 59.087 45.455 0.00 0.00 0.00 2.57
2308 18233 2.038557 GTGCTTCCTCCCTTAGTGTCAA 59.961 50.000 0.00 0.00 0.00 3.18
2309 18234 1.623811 GTGCTTCCTCCCTTAGTGTCA 59.376 52.381 0.00 0.00 0.00 3.58
2310 18235 1.066071 GGTGCTTCCTCCCTTAGTGTC 60.066 57.143 0.00 0.00 0.00 3.67
2311 18236 0.984995 GGTGCTTCCTCCCTTAGTGT 59.015 55.000 0.00 0.00 0.00 3.55
2312 18237 0.984230 TGGTGCTTCCTCCCTTAGTG 59.016 55.000 0.80 0.00 37.07 2.74
2313 18238 1.742308 TTGGTGCTTCCTCCCTTAGT 58.258 50.000 0.80 0.00 37.07 2.24
2314 18239 2.879103 TTTGGTGCTTCCTCCCTTAG 57.121 50.000 0.80 0.00 37.07 2.18
2315 18240 4.569015 GGTTATTTGGTGCTTCCTCCCTTA 60.569 45.833 0.80 0.00 37.07 2.69
2316 18241 3.431415 GTTATTTGGTGCTTCCTCCCTT 58.569 45.455 0.80 0.00 37.07 3.95
2317 18242 2.291605 GGTTATTTGGTGCTTCCTCCCT 60.292 50.000 0.80 0.00 37.07 4.20
2318 18243 2.100197 GGTTATTTGGTGCTTCCTCCC 58.900 52.381 0.80 0.00 37.07 4.30
2319 18244 2.802719 TGGTTATTTGGTGCTTCCTCC 58.197 47.619 0.80 0.00 37.07 4.30
2320 18245 5.405935 AATTGGTTATTTGGTGCTTCCTC 57.594 39.130 0.80 0.00 37.07 3.71
2321 18246 5.823861 AAATTGGTTATTTGGTGCTTCCT 57.176 34.783 0.80 0.00 35.15 3.36
2322 18247 9.830975 ATTATAAATTGGTTATTTGGTGCTTCC 57.169 29.630 0.00 0.00 37.07 3.46
2348 18273 9.500785 TCTCAACATATTTGACTGACATTGTTA 57.499 29.630 0.00 0.00 0.00 2.41
2349 18274 8.394971 TCTCAACATATTTGACTGACATTGTT 57.605 30.769 0.00 0.00 0.00 2.83
2350 18275 7.984422 TCTCAACATATTTGACTGACATTGT 57.016 32.000 0.00 0.00 0.00 2.71
2353 18278 9.683069 GTTTTTCTCAACATATTTGACTGACAT 57.317 29.630 0.00 0.00 0.00 3.06
2355 18280 9.683069 ATGTTTTTCTCAACATATTTGACTGAC 57.317 29.630 0.00 0.00 44.08 3.51
2367 18292 6.183360 GGGTCAGAAGAATGTTTTTCTCAACA 60.183 38.462 0.00 0.00 40.92 3.33
2370 18295 4.515191 CGGGTCAGAAGAATGTTTTTCTCA 59.485 41.667 0.00 0.00 31.53 3.27
2371 18296 4.755123 TCGGGTCAGAAGAATGTTTTTCTC 59.245 41.667 0.00 0.00 31.53 2.87
2372 18297 4.714632 TCGGGTCAGAAGAATGTTTTTCT 58.285 39.130 0.00 0.00 34.09 2.52
2373 18298 4.083271 CCTCGGGTCAGAAGAATGTTTTTC 60.083 45.833 0.00 0.00 0.00 2.29
2374 18299 3.821033 CCTCGGGTCAGAAGAATGTTTTT 59.179 43.478 0.00 0.00 0.00 1.94
2375 18300 3.072476 TCCTCGGGTCAGAAGAATGTTTT 59.928 43.478 0.00 0.00 0.00 2.43
2376 18301 2.637872 TCCTCGGGTCAGAAGAATGTTT 59.362 45.455 0.00 0.00 0.00 2.83
2379 18304 3.334583 TTTCCTCGGGTCAGAAGAATG 57.665 47.619 0.00 0.00 0.00 2.67
2380 18305 4.367039 TTTTTCCTCGGGTCAGAAGAAT 57.633 40.909 0.00 0.00 0.00 2.40
2381 18306 3.849563 TTTTTCCTCGGGTCAGAAGAA 57.150 42.857 0.00 0.00 0.00 2.52
2382 18307 3.616560 CGATTTTTCCTCGGGTCAGAAGA 60.617 47.826 0.00 0.00 32.58 2.87
2386 18311 0.727398 GCGATTTTTCCTCGGGTCAG 59.273 55.000 0.00 0.00 36.65 3.51
2387 18312 0.675522 GGCGATTTTTCCTCGGGTCA 60.676 55.000 0.00 0.00 36.65 4.02
2388 18313 1.702491 CGGCGATTTTTCCTCGGGTC 61.702 60.000 0.00 0.00 36.65 4.46
2389 18314 1.743995 CGGCGATTTTTCCTCGGGT 60.744 57.895 0.00 0.00 36.65 5.28
2390 18315 0.814010 ATCGGCGATTTTTCCTCGGG 60.814 55.000 18.14 0.00 36.65 5.14
2391 18316 0.304705 CATCGGCGATTTTTCCTCGG 59.695 55.000 21.54 1.28 36.65 4.63
2392 18317 0.304705 CCATCGGCGATTTTTCCTCG 59.695 55.000 21.54 6.12 39.11 4.63
2393 18318 1.379527 ACCATCGGCGATTTTTCCTC 58.620 50.000 21.54 0.00 0.00 3.71
2395 18320 2.557317 TCTACCATCGGCGATTTTTCC 58.443 47.619 21.54 0.00 0.00 3.13
2396 18321 3.058914 CCATCTACCATCGGCGATTTTTC 60.059 47.826 21.54 0.00 0.00 2.29
2397 18322 2.878406 CCATCTACCATCGGCGATTTTT 59.122 45.455 21.54 9.68 0.00 1.94
2398 18323 2.158813 ACCATCTACCATCGGCGATTTT 60.159 45.455 21.54 12.34 0.00 1.82
2400 18325 1.048601 ACCATCTACCATCGGCGATT 58.951 50.000 21.54 9.68 0.00 3.34
2401 18326 1.544691 GTACCATCTACCATCGGCGAT 59.455 52.381 18.14 18.14 0.00 4.58
2402 18327 0.956633 GTACCATCTACCATCGGCGA 59.043 55.000 13.87 13.87 0.00 5.54
2403 18328 0.671796 TGTACCATCTACCATCGGCG 59.328 55.000 0.00 0.00 0.00 6.46
2405 18330 3.812156 TTGTGTACCATCTACCATCGG 57.188 47.619 0.00 0.00 0.00 4.18
2406 18331 6.925211 AGATATTGTGTACCATCTACCATCG 58.075 40.000 0.00 0.00 0.00 3.84
2407 18332 7.604164 CCAAGATATTGTGTACCATCTACCATC 59.396 40.741 0.00 0.00 0.00 3.51
2408 18333 7.292356 TCCAAGATATTGTGTACCATCTACCAT 59.708 37.037 0.00 0.00 0.00 3.55
2411 18336 9.561069 AATTCCAAGATATTGTGTACCATCTAC 57.439 33.333 0.00 0.00 0.00 2.59
2412 18337 9.778741 GAATTCCAAGATATTGTGTACCATCTA 57.221 33.333 0.00 0.00 0.00 1.98
2414 18339 7.502226 TGGAATTCCAAGATATTGTGTACCATC 59.498 37.037 25.13 0.00 44.35 3.51
2416 18341 6.726379 TGGAATTCCAAGATATTGTGTACCA 58.274 36.000 25.13 0.00 44.35 3.25
2431 18356 9.902684 AATGCATGTAAAATATTTGGAATTCCA 57.097 25.926 23.63 23.63 45.94 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.