Multiple sequence alignment - TraesCS5A01G051700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G051700 chr5A 100.000 4349 0 0 1 4349 46707702 46712050 0.000000e+00 8032.0
1 TraesCS5A01G051700 chr5A 85.546 1017 133 8 2187 3193 47540567 47539555 0.000000e+00 1051.0
2 TraesCS5A01G051700 chr5A 83.602 994 149 10 2208 3193 47461010 47460023 0.000000e+00 920.0
3 TraesCS5A01G051700 chr5A 99.119 227 2 0 4123 4349 705837319 705837545 4.050000e-110 409.0
4 TraesCS5A01G051700 chr5A 74.559 680 147 21 1255 1918 47461967 47461298 1.540000e-69 274.0
5 TraesCS5A01G051700 chr5B 94.198 3568 150 16 1 3539 62030551 62027012 0.000000e+00 5389.0
6 TraesCS5A01G051700 chr5B 94.111 3413 144 21 280 3672 63542163 63545538 0.000000e+00 5136.0
7 TraesCS5A01G051700 chr5B 86.131 995 126 6 2205 3190 72098413 72099404 0.000000e+00 1062.0
8 TraesCS5A01G051700 chr5B 85.763 295 36 4 1 291 63536672 63536964 1.520000e-79 307.0
9 TraesCS5A01G051700 chr5B 95.238 189 8 1 3795 3983 63545566 63545753 9.140000e-77 298.0
10 TraesCS5A01G051700 chr5B 92.188 64 3 2 3038 3100 334784099 334784037 5.990000e-14 89.8
11 TraesCS5A01G051700 chr5D 95.968 2877 105 4 822 3697 58500592 58503458 0.000000e+00 4660.0
12 TraesCS5A01G051700 chr5D 92.290 882 41 8 3 870 58499741 58500609 0.000000e+00 1227.0
13 TraesCS5A01G051700 chr5D 85.447 1017 134 8 2187 3193 59044253 59043241 0.000000e+00 1046.0
14 TraesCS5A01G051700 chr5D 94.524 347 15 4 3783 4128 58503456 58503799 2.300000e-147 532.0
15 TraesCS5A01G051700 chr5D 74.518 726 159 20 1260 1966 59045080 59044362 4.250000e-75 292.0
16 TraesCS5A01G051700 chr5D 91.011 89 8 0 3700 3788 509559294 509559206 2.120000e-23 121.0
17 TraesCS5A01G051700 chr5D 83.486 109 14 2 3695 3802 52265383 52265488 9.950000e-17 99.0
18 TraesCS5A01G051700 chr3B 98.707 232 2 1 4118 4349 659593408 659593638 1.130000e-110 411.0
19 TraesCS5A01G051700 chr3B 98.684 228 2 1 4122 4349 595691267 595691493 1.880000e-108 403.0
20 TraesCS5A01G051700 chr3B 88.542 96 11 0 3689 3784 260430880 260430975 2.750000e-22 117.0
21 TraesCS5A01G051700 chr4A 99.554 224 1 0 4126 4349 2224725 2224502 4.050000e-110 409.0
22 TraesCS5A01G051700 chr4A 74.464 513 119 11 2621 3127 573879388 573879894 1.230000e-50 211.0
23 TraesCS5A01G051700 chr4A 91.398 93 8 0 3700 3792 396757328 396757420 1.270000e-25 128.0
24 TraesCS5A01G051700 chr4A 80.645 124 22 2 2234 2356 573743489 573743611 1.290000e-15 95.3
25 TraesCS5A01G051700 chr2B 97.890 237 3 1 4113 4349 420196815 420197049 4.050000e-110 409.0
26 TraesCS5A01G051700 chr2B 80.645 93 18 0 3002 3094 793525258 793525166 6.030000e-09 73.1
27 TraesCS5A01G051700 chr2A 99.123 228 1 1 4122 4349 676079652 676079426 4.050000e-110 409.0
28 TraesCS5A01G051700 chr7A 99.552 223 1 0 4127 4349 496919442 496919220 1.460000e-109 407.0
29 TraesCS5A01G051700 chr7A 92.135 89 6 1 3696 3784 63332465 63332378 1.640000e-24 124.0
30 TraesCS5A01G051700 chr7A 87.500 104 10 2 3699 3802 133087701 133087801 2.750000e-22 117.0
31 TraesCS5A01G051700 chr6A 99.552 223 1 0 4127 4349 318892286 318892064 1.460000e-109 407.0
32 TraesCS5A01G051700 chr1B 99.552 223 1 0 4127 4349 163701147 163700925 1.460000e-109 407.0
33 TraesCS5A01G051700 chr1B 84.685 111 15 2 3697 3805 279914358 279914468 4.600000e-20 110.0
34 TraesCS5A01G051700 chr4D 79.274 468 88 6 2620 3081 485538799 485539263 7.020000e-83 318.0
35 TraesCS5A01G051700 chr4B 76.575 508 105 13 2627 3127 42135355 42134855 2.580000e-67 267.0
36 TraesCS5A01G051700 chr4B 75.942 345 76 6 2244 2584 42026447 42026106 2.080000e-38 171.0
37 TraesCS5A01G051700 chr7B 80.872 298 55 2 2620 2916 40887718 40888014 2.620000e-57 233.0
38 TraesCS5A01G051700 chr7B 91.304 92 4 3 3700 3787 684940006 684939915 5.910000e-24 122.0
39 TraesCS5A01G051700 chr3A 91.111 90 8 0 3695 3784 720848424 720848335 5.910000e-24 122.0
40 TraesCS5A01G051700 chr7D 87.879 99 12 0 3693 3791 226690339 226690437 2.750000e-22 117.0
41 TraesCS5A01G051700 chr1D 84.685 111 12 3 3697 3805 199427779 199427886 5.950000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G051700 chr5A 46707702 46712050 4348 False 8032.000000 8032 100.000000 1 4349 1 chr5A.!!$F1 4348
1 TraesCS5A01G051700 chr5A 47539555 47540567 1012 True 1051.000000 1051 85.546000 2187 3193 1 chr5A.!!$R1 1006
2 TraesCS5A01G051700 chr5A 47460023 47461967 1944 True 597.000000 920 79.080500 1255 3193 2 chr5A.!!$R2 1938
3 TraesCS5A01G051700 chr5B 62027012 62030551 3539 True 5389.000000 5389 94.198000 1 3539 1 chr5B.!!$R1 3538
4 TraesCS5A01G051700 chr5B 63542163 63545753 3590 False 2717.000000 5136 94.674500 280 3983 2 chr5B.!!$F3 3703
5 TraesCS5A01G051700 chr5B 72098413 72099404 991 False 1062.000000 1062 86.131000 2205 3190 1 chr5B.!!$F2 985
6 TraesCS5A01G051700 chr5D 58499741 58503799 4058 False 2139.666667 4660 94.260667 3 4128 3 chr5D.!!$F2 4125
7 TraesCS5A01G051700 chr5D 59043241 59045080 1839 True 669.000000 1046 79.982500 1260 3193 2 chr5D.!!$R2 1933
8 TraesCS5A01G051700 chr4A 573879388 573879894 506 False 211.000000 211 74.464000 2621 3127 1 chr4A.!!$F3 506
9 TraesCS5A01G051700 chr4B 42134855 42135355 500 True 267.000000 267 76.575000 2627 3127 1 chr4B.!!$R2 500

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
50 51 0.250901 AGTCCAGGCACCACAATGAC 60.251 55.000 0.00 0.0 0.00 3.06 F
1116 1187 1.707989 TGTTAGGATCCCAAGCACCAA 59.292 47.619 8.55 0.0 0.00 3.67 F
1568 1639 0.950836 CGGTGTCAACCTTTGCATCA 59.049 50.000 0.00 0.0 45.17 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1442 1513 1.203441 TGAGGCATTCCAGGCACTCT 61.203 55.0 0.0 0.0 34.6 3.24 R
2329 2459 0.615850 CCTTCCCCGAGCTTCTTCTT 59.384 55.0 0.0 0.0 0.0 2.52 R
3567 3734 1.155042 GCTGAGTCAAGCCAAGTCTG 58.845 55.0 0.0 0.0 37.2 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 5.448360 GCACAGAAGGATTGCTTATCAAGTC 60.448 44.000 0.00 0.00 38.22 3.01
50 51 0.250901 AGTCCAGGCACCACAATGAC 60.251 55.000 0.00 0.00 0.00 3.06
98 113 2.451490 CAGGCTCCTGAACTAGAGACA 58.549 52.381 10.33 0.00 46.30 3.41
99 114 2.828520 CAGGCTCCTGAACTAGAGACAA 59.171 50.000 10.33 0.00 46.30 3.18
116 141 9.232082 CTAGAGACAAGTTCATCTTATCTTTCG 57.768 37.037 0.00 0.00 39.66 3.46
117 142 7.831753 AGAGACAAGTTCATCTTATCTTTCGA 58.168 34.615 0.00 0.00 39.66 3.71
184 209 3.495001 GTGTTACTCTGTCCTGCAGTTTC 59.505 47.826 13.81 3.08 45.23 2.78
186 211 2.540265 ACTCTGTCCTGCAGTTTCTG 57.460 50.000 13.81 6.75 45.23 3.02
239 264 5.941058 TGCCCAAGATCGTTTTATTCTGTTA 59.059 36.000 0.00 0.00 0.00 2.41
282 307 9.129209 GATGTAAGCATTTTTGTTTCTACTTCC 57.871 33.333 0.00 0.00 35.07 3.46
372 397 9.490379 GTGTTATATCTATTTTTGGGATCGTCT 57.510 33.333 0.00 0.00 0.00 4.18
651 678 5.815233 ATAGATACATGTGGTTCTGGAGG 57.185 43.478 9.11 0.00 0.00 4.30
748 783 6.940298 TGGAGAACTGATAAACAAGGTAAAGG 59.060 38.462 0.00 0.00 0.00 3.11
842 877 9.632807 GATAGTGACTGAGGCAAATACTAATAG 57.367 37.037 0.00 0.00 0.00 1.73
1045 1113 3.322828 GGTCAGGTAGGTTCACAAGTACA 59.677 47.826 0.00 0.00 0.00 2.90
1046 1114 4.557205 GTCAGGTAGGTTCACAAGTACAG 58.443 47.826 0.00 0.00 0.00 2.74
1116 1187 1.707989 TGTTAGGATCCCAAGCACCAA 59.292 47.619 8.55 0.00 0.00 3.67
1117 1188 2.109128 TGTTAGGATCCCAAGCACCAAA 59.891 45.455 8.55 0.00 0.00 3.28
1568 1639 0.950836 CGGTGTCAACCTTTGCATCA 59.049 50.000 0.00 0.00 45.17 3.07
1580 1651 2.746277 GCATCAACGGCCGACCTT 60.746 61.111 35.90 13.88 0.00 3.50
1996 2118 3.785887 TGGGGTAGCCTTCTTTCACATAT 59.214 43.478 11.48 0.00 0.00 1.78
1997 2119 4.972568 TGGGGTAGCCTTCTTTCACATATA 59.027 41.667 11.48 0.00 0.00 0.86
1998 2120 5.610982 TGGGGTAGCCTTCTTTCACATATAT 59.389 40.000 11.48 0.00 0.00 0.86
2000 2122 7.461043 TGGGGTAGCCTTCTTTCACATATATAT 59.539 37.037 11.48 0.00 0.00 0.86
2001 2123 7.988028 GGGGTAGCCTTCTTTCACATATATATC 59.012 40.741 11.48 0.00 0.00 1.63
2149 2279 2.104963 GGTGTCTTGGTCTGTCTCCTTT 59.895 50.000 0.00 0.00 0.00 3.11
2288 2418 4.211330 TGGGCCCAAGCGGTTTCA 62.211 61.111 26.33 0.00 41.24 2.69
2329 2459 0.031585 CACCGACAACTTCTCCGACA 59.968 55.000 0.00 0.00 0.00 4.35
2410 2540 1.817099 CTCGAGGTGGCCATCAAGC 60.817 63.158 20.62 6.10 0.00 4.01
2445 2575 3.593442 TCCAAGCAAGGGAAGAAAGAA 57.407 42.857 0.00 0.00 0.00 2.52
2785 2915 4.451150 GGCTCGTCGACCATGGCA 62.451 66.667 13.04 0.00 0.00 4.92
2847 2977 2.662596 GACCCGGAGTGCATGACA 59.337 61.111 0.73 0.00 0.00 3.58
2964 3100 2.142292 AACAGATGGTCCACCTGGCC 62.142 60.000 18.11 0.00 36.82 5.36
2992 3128 1.859427 CTGGGCATCATACGGCATGC 61.859 60.000 9.90 9.90 44.06 4.06
3503 3668 4.119442 TCACCAGAACGGCTTATACTTC 57.881 45.455 0.00 0.00 39.03 3.01
3535 3700 3.861840 TCTTTCATTCTCTACCCGCAAG 58.138 45.455 0.00 0.00 0.00 4.01
3562 3729 2.297701 GCAAACCAGTGGAGTCAAAGA 58.702 47.619 18.40 0.00 0.00 2.52
3567 3734 2.887152 ACCAGTGGAGTCAAAGATTTGC 59.113 45.455 18.40 0.00 38.05 3.68
3659 3827 2.265647 GAGTCTGACTCGTACTTGGC 57.734 55.000 20.91 0.00 35.28 4.52
3710 3878 8.953223 AATTTCTTATATAGTACTCCCTCCGT 57.047 34.615 0.00 0.00 0.00 4.69
3711 3879 8.953223 ATTTCTTATATAGTACTCCCTCCGTT 57.047 34.615 0.00 0.00 0.00 4.44
3712 3880 7.992754 TTCTTATATAGTACTCCCTCCGTTC 57.007 40.000 0.00 0.00 0.00 3.95
3713 3881 6.479884 TCTTATATAGTACTCCCTCCGTTCC 58.520 44.000 0.00 0.00 0.00 3.62
3714 3882 4.736611 ATATAGTACTCCCTCCGTTCCA 57.263 45.455 0.00 0.00 0.00 3.53
3715 3883 3.614568 ATAGTACTCCCTCCGTTCCAT 57.385 47.619 0.00 0.00 0.00 3.41
3716 3884 4.736611 ATAGTACTCCCTCCGTTCCATA 57.263 45.455 0.00 0.00 0.00 2.74
3717 3885 3.393426 AGTACTCCCTCCGTTCCATAA 57.607 47.619 0.00 0.00 0.00 1.90
3718 3886 3.924922 AGTACTCCCTCCGTTCCATAAT 58.075 45.455 0.00 0.00 0.00 1.28
3719 3887 5.070823 AGTACTCCCTCCGTTCCATAATA 57.929 43.478 0.00 0.00 0.00 0.98
3720 3888 5.652324 AGTACTCCCTCCGTTCCATAATAT 58.348 41.667 0.00 0.00 0.00 1.28
3721 3889 6.797707 AGTACTCCCTCCGTTCCATAATATA 58.202 40.000 0.00 0.00 0.00 0.86
3722 3890 7.243824 AGTACTCCCTCCGTTCCATAATATAA 58.756 38.462 0.00 0.00 0.00 0.98
3723 3891 6.607004 ACTCCCTCCGTTCCATAATATAAG 57.393 41.667 0.00 0.00 0.00 1.73
3724 3892 6.320518 ACTCCCTCCGTTCCATAATATAAGA 58.679 40.000 0.00 0.00 0.00 2.10
3725 3893 6.437793 ACTCCCTCCGTTCCATAATATAAGAG 59.562 42.308 0.00 0.00 0.00 2.85
3726 3894 5.187186 TCCCTCCGTTCCATAATATAAGAGC 59.813 44.000 0.00 0.00 0.00 4.09
3727 3895 5.103000 CCTCCGTTCCATAATATAAGAGCG 58.897 45.833 3.06 3.06 33.46 5.03
3728 3896 5.336531 CCTCCGTTCCATAATATAAGAGCGT 60.337 44.000 7.53 0.00 32.01 5.07
3729 3897 6.092955 TCCGTTCCATAATATAAGAGCGTT 57.907 37.500 7.53 0.00 32.01 4.84
3730 3898 6.518493 TCCGTTCCATAATATAAGAGCGTTT 58.482 36.000 7.53 0.00 32.01 3.60
3731 3899 6.987992 TCCGTTCCATAATATAAGAGCGTTTT 59.012 34.615 7.53 0.00 32.01 2.43
3732 3900 7.496591 TCCGTTCCATAATATAAGAGCGTTTTT 59.503 33.333 7.53 0.00 32.01 1.94
3733 3901 7.586300 CCGTTCCATAATATAAGAGCGTTTTTG 59.414 37.037 7.53 0.00 32.01 2.44
3734 3902 8.332464 CGTTCCATAATATAAGAGCGTTTTTGA 58.668 33.333 0.00 0.00 0.00 2.69
3735 3903 9.434559 GTTCCATAATATAAGAGCGTTTTTGAC 57.565 33.333 0.00 0.00 0.00 3.18
3736 3904 8.725405 TCCATAATATAAGAGCGTTTTTGACA 57.275 30.769 0.00 0.00 0.00 3.58
3737 3905 9.168451 TCCATAATATAAGAGCGTTTTTGACAA 57.832 29.630 0.00 0.00 0.00 3.18
3738 3906 9.950680 CCATAATATAAGAGCGTTTTTGACAAT 57.049 29.630 0.00 0.00 0.00 2.71
3742 3910 9.769093 AATATAAGAGCGTTTTTGACAATACAC 57.231 29.630 0.00 0.00 0.00 2.90
3743 3911 5.751243 AAGAGCGTTTTTGACAATACACT 57.249 34.783 0.00 0.00 0.00 3.55
3744 3912 6.854496 AAGAGCGTTTTTGACAATACACTA 57.146 33.333 0.00 0.00 0.00 2.74
3745 3913 6.467723 AGAGCGTTTTTGACAATACACTAG 57.532 37.500 0.00 0.00 0.00 2.57
3746 3914 5.989777 AGAGCGTTTTTGACAATACACTAGT 59.010 36.000 0.00 0.00 0.00 2.57
3747 3915 5.985781 AGCGTTTTTGACAATACACTAGTG 58.014 37.500 21.44 21.44 0.00 2.74
3748 3916 5.526111 AGCGTTTTTGACAATACACTAGTGT 59.474 36.000 30.13 30.13 46.87 3.55
3789 3957 4.993705 TGGAACAGAGGGAGTATTTGTT 57.006 40.909 0.00 0.00 34.91 2.83
3790 3958 5.319043 TGGAACAGAGGGAGTATTTGTTT 57.681 39.130 0.00 0.00 32.58 2.83
3791 3959 6.442541 TGGAACAGAGGGAGTATTTGTTTA 57.557 37.500 0.00 0.00 32.58 2.01
3792 3960 6.235664 TGGAACAGAGGGAGTATTTGTTTAC 58.764 40.000 0.00 0.00 32.58 2.01
3793 3961 6.183361 TGGAACAGAGGGAGTATTTGTTTACA 60.183 38.462 0.00 0.00 32.58 2.41
4019 4187 6.535508 GGAGCGACTCAAAGTTGATTAAGTAT 59.464 38.462 8.71 0.00 36.46 2.12
4044 4212 3.668191 GGCGTAAAATGTGAATGTGTGTG 59.332 43.478 0.00 0.00 0.00 3.82
4054 4222 7.734924 ATGTGAATGTGTGTGGTCATATATC 57.265 36.000 0.00 0.00 0.00 1.63
4081 4249 9.495572 CTTATTTTTACCCATTGTGCCTTTTTA 57.504 29.630 0.00 0.00 0.00 1.52
4128 4296 9.006215 CAGTTTAGCACTTGTTTTGTACTTAAC 57.994 33.333 0.00 0.00 30.92 2.01
4129 4297 8.732531 AGTTTAGCACTTGTTTTGTACTTAACA 58.267 29.630 8.63 8.63 30.25 2.41
4130 4298 9.344309 GTTTAGCACTTGTTTTGTACTTAACAA 57.656 29.630 18.53 18.53 46.41 2.83
4143 4311 8.867112 TTGTACTTAACAACAACAACAACAAA 57.133 26.923 0.00 0.00 43.22 2.83
4144 4312 8.867112 TGTACTTAACAACAACAACAACAAAA 57.133 26.923 0.00 0.00 34.29 2.44
4145 4313 9.309516 TGTACTTAACAACAACAACAACAAAAA 57.690 25.926 0.00 0.00 34.29 1.94
4146 4314 9.570507 GTACTTAACAACAACAACAACAAAAAC 57.429 29.630 0.00 0.00 0.00 2.43
4147 4315 8.197988 ACTTAACAACAACAACAACAAAAACA 57.802 26.923 0.00 0.00 0.00 2.83
4148 4316 8.665685 ACTTAACAACAACAACAACAAAAACAA 58.334 25.926 0.00 0.00 0.00 2.83
4149 4317 8.822105 TTAACAACAACAACAACAAAAACAAC 57.178 26.923 0.00 0.00 0.00 3.32
4150 4318 6.422776 ACAACAACAACAACAAAAACAACA 57.577 29.167 0.00 0.00 0.00 3.33
4151 4319 6.842163 ACAACAACAACAACAAAAACAACAA 58.158 28.000 0.00 0.00 0.00 2.83
4152 4320 6.743172 ACAACAACAACAACAAAAACAACAAC 59.257 30.769 0.00 0.00 0.00 3.32
4153 4321 6.422776 ACAACAACAACAAAAACAACAACA 57.577 29.167 0.00 0.00 0.00 3.33
4154 4322 6.842163 ACAACAACAACAAAAACAACAACAA 58.158 28.000 0.00 0.00 0.00 2.83
4155 4323 6.743172 ACAACAACAACAAAAACAACAACAAC 59.257 30.769 0.00 0.00 0.00 3.32
4156 4324 6.422776 ACAACAACAAAAACAACAACAACA 57.577 29.167 0.00 0.00 0.00 3.33
4157 4325 6.842163 ACAACAACAAAAACAACAACAACAA 58.158 28.000 0.00 0.00 0.00 2.83
4158 4326 7.305474 ACAACAACAAAAACAACAACAACAAA 58.695 26.923 0.00 0.00 0.00 2.83
4159 4327 7.483059 ACAACAACAAAAACAACAACAACAAAG 59.517 29.630 0.00 0.00 0.00 2.77
4160 4328 5.968261 ACAACAAAAACAACAACAACAAAGC 59.032 32.000 0.00 0.00 0.00 3.51
4161 4329 5.102020 ACAAAAACAACAACAACAAAGCC 57.898 34.783 0.00 0.00 0.00 4.35
4162 4330 4.819088 ACAAAAACAACAACAACAAAGCCT 59.181 33.333 0.00 0.00 0.00 4.58
4163 4331 5.298026 ACAAAAACAACAACAACAAAGCCTT 59.702 32.000 0.00 0.00 0.00 4.35
4164 4332 6.183360 ACAAAAACAACAACAACAAAGCCTTT 60.183 30.769 0.00 0.00 0.00 3.11
4165 4333 7.012421 ACAAAAACAACAACAACAAAGCCTTTA 59.988 29.630 0.00 0.00 0.00 1.85
4166 4334 6.720012 AAACAACAACAACAAAGCCTTTAG 57.280 33.333 0.00 0.00 0.00 1.85
4167 4335 5.400066 ACAACAACAACAAAGCCTTTAGT 57.600 34.783 0.00 0.00 0.00 2.24
4168 4336 5.407502 ACAACAACAACAAAGCCTTTAGTC 58.592 37.500 0.00 0.00 0.00 2.59
4169 4337 4.649088 ACAACAACAAAGCCTTTAGTCC 57.351 40.909 0.00 0.00 0.00 3.85
4170 4338 3.383505 ACAACAACAAAGCCTTTAGTCCC 59.616 43.478 0.00 0.00 0.00 4.46
4171 4339 3.306472 ACAACAAAGCCTTTAGTCCCA 57.694 42.857 0.00 0.00 0.00 4.37
4172 4340 3.637769 ACAACAAAGCCTTTAGTCCCAA 58.362 40.909 0.00 0.00 0.00 4.12
4173 4341 4.027437 ACAACAAAGCCTTTAGTCCCAAA 58.973 39.130 0.00 0.00 0.00 3.28
4174 4342 4.142026 ACAACAAAGCCTTTAGTCCCAAAC 60.142 41.667 0.00 0.00 0.00 2.93
4175 4343 3.637769 ACAAAGCCTTTAGTCCCAAACA 58.362 40.909 0.00 0.00 0.00 2.83
4176 4344 4.027437 ACAAAGCCTTTAGTCCCAAACAA 58.973 39.130 0.00 0.00 0.00 2.83
4177 4345 4.099419 ACAAAGCCTTTAGTCCCAAACAAG 59.901 41.667 0.00 0.00 0.00 3.16
4178 4346 3.595190 AGCCTTTAGTCCCAAACAAGT 57.405 42.857 0.00 0.00 0.00 3.16
4179 4347 3.910989 AGCCTTTAGTCCCAAACAAGTT 58.089 40.909 0.00 0.00 0.00 2.66
4180 4348 3.636764 AGCCTTTAGTCCCAAACAAGTTG 59.363 43.478 0.00 0.00 36.94 3.16
4189 4357 1.995376 CAAACAAGTTGGGGTAGGCT 58.005 50.000 7.96 0.00 33.18 4.58
4190 4358 3.149005 CAAACAAGTTGGGGTAGGCTA 57.851 47.619 7.96 0.00 33.18 3.93
4191 4359 3.081804 CAAACAAGTTGGGGTAGGCTAG 58.918 50.000 7.96 0.00 33.18 3.42
4192 4360 2.337359 ACAAGTTGGGGTAGGCTAGA 57.663 50.000 7.96 0.00 0.00 2.43
4193 4361 2.188817 ACAAGTTGGGGTAGGCTAGAG 58.811 52.381 7.96 0.00 0.00 2.43
4194 4362 1.486726 CAAGTTGGGGTAGGCTAGAGG 59.513 57.143 0.00 0.00 0.00 3.69
4195 4363 0.717196 AGTTGGGGTAGGCTAGAGGT 59.283 55.000 0.00 0.00 0.00 3.85
4196 4364 0.831307 GTTGGGGTAGGCTAGAGGTG 59.169 60.000 0.00 0.00 0.00 4.00
4197 4365 0.714180 TTGGGGTAGGCTAGAGGTGA 59.286 55.000 0.00 0.00 0.00 4.02
4198 4366 0.714180 TGGGGTAGGCTAGAGGTGAA 59.286 55.000 0.00 0.00 0.00 3.18
4199 4367 1.079825 TGGGGTAGGCTAGAGGTGAAA 59.920 52.381 0.00 0.00 0.00 2.69
4200 4368 1.485480 GGGGTAGGCTAGAGGTGAAAC 59.515 57.143 0.00 0.00 0.00 2.78
4215 4383 3.531538 GTGAAACCCATAAGATCTCGCA 58.468 45.455 0.00 0.00 0.00 5.10
4216 4384 3.938963 GTGAAACCCATAAGATCTCGCAA 59.061 43.478 0.00 0.00 0.00 4.85
4217 4385 3.938963 TGAAACCCATAAGATCTCGCAAC 59.061 43.478 0.00 0.00 0.00 4.17
4218 4386 2.622064 ACCCATAAGATCTCGCAACC 57.378 50.000 0.00 0.00 0.00 3.77
4219 4387 1.837439 ACCCATAAGATCTCGCAACCA 59.163 47.619 0.00 0.00 0.00 3.67
4220 4388 2.238646 ACCCATAAGATCTCGCAACCAA 59.761 45.455 0.00 0.00 0.00 3.67
4221 4389 2.614057 CCCATAAGATCTCGCAACCAAC 59.386 50.000 0.00 0.00 0.00 3.77
4222 4390 3.535561 CCATAAGATCTCGCAACCAACT 58.464 45.455 0.00 0.00 0.00 3.16
4223 4391 3.557595 CCATAAGATCTCGCAACCAACTC 59.442 47.826 0.00 0.00 0.00 3.01
4224 4392 2.839486 AAGATCTCGCAACCAACTCA 57.161 45.000 0.00 0.00 0.00 3.41
4225 4393 3.340814 AAGATCTCGCAACCAACTCAT 57.659 42.857 0.00 0.00 0.00 2.90
4226 4394 2.625737 AGATCTCGCAACCAACTCATG 58.374 47.619 0.00 0.00 0.00 3.07
4234 4402 3.915575 CCAACTCATGGCTCTGGC 58.084 61.111 0.00 0.00 43.80 4.85
4235 4403 1.001764 CCAACTCATGGCTCTGGCA 60.002 57.895 0.00 0.00 43.80 4.92
4236 4404 1.310933 CCAACTCATGGCTCTGGCAC 61.311 60.000 0.00 0.00 43.80 5.01
4237 4405 0.607217 CAACTCATGGCTCTGGCACA 60.607 55.000 0.00 0.00 41.84 4.57
4238 4406 0.330604 AACTCATGGCTCTGGCACAT 59.669 50.000 0.00 0.00 41.84 3.21
4239 4407 0.393944 ACTCATGGCTCTGGCACATG 60.394 55.000 8.97 8.97 41.84 3.21
4240 4408 1.077285 TCATGGCTCTGGCACATGG 60.077 57.895 13.76 0.00 41.84 3.66
4241 4409 1.077285 CATGGCTCTGGCACATGGA 60.077 57.895 7.68 0.00 41.84 3.41
4242 4410 0.467474 CATGGCTCTGGCACATGGAT 60.467 55.000 7.68 0.00 41.84 3.41
4243 4411 1.142936 ATGGCTCTGGCACATGGATA 58.857 50.000 0.00 0.00 41.84 2.59
4244 4412 0.471191 TGGCTCTGGCACATGGATAG 59.529 55.000 0.00 0.00 38.20 2.08
4245 4413 0.888285 GGCTCTGGCACATGGATAGC 60.888 60.000 0.00 0.00 38.20 2.97
4246 4414 0.179037 GCTCTGGCACATGGATAGCA 60.179 55.000 0.00 0.00 38.20 3.49
4247 4415 1.748244 GCTCTGGCACATGGATAGCAA 60.748 52.381 0.00 0.00 38.20 3.91
4248 4416 2.219458 CTCTGGCACATGGATAGCAAG 58.781 52.381 0.00 0.00 38.20 4.01
4249 4417 0.666913 CTGGCACATGGATAGCAAGC 59.333 55.000 0.00 0.00 38.20 4.01
4250 4418 0.256752 TGGCACATGGATAGCAAGCT 59.743 50.000 0.00 0.00 0.00 3.74
4251 4419 1.341285 TGGCACATGGATAGCAAGCTT 60.341 47.619 0.00 0.00 0.00 3.74
4252 4420 1.336125 GGCACATGGATAGCAAGCTTC 59.664 52.381 0.00 0.00 0.00 3.86
4253 4421 1.336125 GCACATGGATAGCAAGCTTCC 59.664 52.381 0.00 7.95 0.00 3.46
4254 4422 2.646930 CACATGGATAGCAAGCTTCCA 58.353 47.619 20.33 20.33 43.37 3.53
4255 4423 2.357009 CACATGGATAGCAAGCTTCCAC 59.643 50.000 20.41 0.00 42.09 4.02
4256 4424 1.600957 CATGGATAGCAAGCTTCCACG 59.399 52.381 20.41 13.24 42.09 4.94
4257 4425 0.744414 TGGATAGCAAGCTTCCACGC 60.744 55.000 16.61 0.00 34.65 5.34
4258 4426 0.744414 GGATAGCAAGCTTCCACGCA 60.744 55.000 8.96 0.00 0.00 5.24
4259 4427 0.375106 GATAGCAAGCTTCCACGCAC 59.625 55.000 8.96 0.00 0.00 5.34
4260 4428 1.026718 ATAGCAAGCTTCCACGCACC 61.027 55.000 8.96 0.00 0.00 5.01
4261 4429 4.043200 GCAAGCTTCCACGCACCC 62.043 66.667 0.00 0.00 0.00 4.61
4262 4430 3.365265 CAAGCTTCCACGCACCCC 61.365 66.667 0.00 0.00 0.00 4.95
4263 4431 3.570212 AAGCTTCCACGCACCCCT 61.570 61.111 0.00 0.00 0.00 4.79
4264 4432 3.850098 AAGCTTCCACGCACCCCTG 62.850 63.158 0.00 0.00 0.00 4.45
4265 4433 4.643387 GCTTCCACGCACCCCTGT 62.643 66.667 0.00 0.00 0.00 4.00
4266 4434 2.358737 CTTCCACGCACCCCTGTC 60.359 66.667 0.00 0.00 0.00 3.51
4267 4435 3.901797 CTTCCACGCACCCCTGTCC 62.902 68.421 0.00 0.00 0.00 4.02
4269 4437 4.033776 CCACGCACCCCTGTCCAT 62.034 66.667 0.00 0.00 0.00 3.41
4270 4438 2.665089 CCACGCACCCCTGTCCATA 61.665 63.158 0.00 0.00 0.00 2.74
4271 4439 1.153369 CACGCACCCCTGTCCATAG 60.153 63.158 0.00 0.00 0.00 2.23
4272 4440 2.203070 CGCACCCCTGTCCATAGC 60.203 66.667 0.00 0.00 0.00 2.97
4273 4441 2.735772 CGCACCCCTGTCCATAGCT 61.736 63.158 0.00 0.00 0.00 3.32
4274 4442 1.399744 CGCACCCCTGTCCATAGCTA 61.400 60.000 0.00 0.00 0.00 3.32
4275 4443 0.394565 GCACCCCTGTCCATAGCTAG 59.605 60.000 0.00 0.00 0.00 3.42
4276 4444 0.394565 CACCCCTGTCCATAGCTAGC 59.605 60.000 6.62 6.62 0.00 3.42
4277 4445 0.266152 ACCCCTGTCCATAGCTAGCT 59.734 55.000 23.12 23.12 0.00 3.32
4278 4446 0.972883 CCCCTGTCCATAGCTAGCTC 59.027 60.000 23.26 7.00 0.00 4.09
4279 4447 1.482177 CCCCTGTCCATAGCTAGCTCT 60.482 57.143 23.26 9.05 0.00 4.09
4280 4448 2.324541 CCCTGTCCATAGCTAGCTCTT 58.675 52.381 23.26 7.47 0.00 2.85
4281 4449 2.703007 CCCTGTCCATAGCTAGCTCTTT 59.297 50.000 23.26 4.57 0.00 2.52
4282 4450 3.494048 CCCTGTCCATAGCTAGCTCTTTG 60.494 52.174 23.26 16.78 0.00 2.77
4283 4451 3.133721 CCTGTCCATAGCTAGCTCTTTGT 59.866 47.826 23.26 0.00 0.00 2.83
4284 4452 4.367450 CTGTCCATAGCTAGCTCTTTGTC 58.633 47.826 23.26 12.44 0.00 3.18
4285 4453 3.181486 TGTCCATAGCTAGCTCTTTGTCG 60.181 47.826 23.26 6.37 0.00 4.35
4286 4454 3.066900 GTCCATAGCTAGCTCTTTGTCGA 59.933 47.826 23.26 8.50 0.00 4.20
4287 4455 3.891977 TCCATAGCTAGCTCTTTGTCGAT 59.108 43.478 23.26 3.19 0.00 3.59
4288 4456 5.048643 GTCCATAGCTAGCTCTTTGTCGATA 60.049 44.000 23.26 0.00 0.00 2.92
4289 4457 5.048643 TCCATAGCTAGCTCTTTGTCGATAC 60.049 44.000 23.26 0.00 0.00 2.24
4290 4458 5.048364 CCATAGCTAGCTCTTTGTCGATACT 60.048 44.000 23.26 0.00 0.00 2.12
4291 4459 4.561735 AGCTAGCTCTTTGTCGATACTC 57.438 45.455 12.68 0.00 0.00 2.59
4292 4460 3.316868 AGCTAGCTCTTTGTCGATACTCC 59.683 47.826 12.68 0.00 0.00 3.85
4293 4461 3.066900 GCTAGCTCTTTGTCGATACTCCA 59.933 47.826 7.70 0.00 0.00 3.86
4294 4462 4.440250 GCTAGCTCTTTGTCGATACTCCAA 60.440 45.833 7.70 0.00 0.00 3.53
4295 4463 4.744795 AGCTCTTTGTCGATACTCCAAT 57.255 40.909 0.00 0.00 0.00 3.16
4296 4464 4.688021 AGCTCTTTGTCGATACTCCAATC 58.312 43.478 0.00 0.00 0.00 2.67
4297 4465 3.804873 GCTCTTTGTCGATACTCCAATCC 59.195 47.826 0.00 0.00 0.00 3.01
4298 4466 4.442192 GCTCTTTGTCGATACTCCAATCCT 60.442 45.833 0.00 0.00 0.00 3.24
4299 4467 5.665459 CTCTTTGTCGATACTCCAATCCTT 58.335 41.667 0.00 0.00 0.00 3.36
4300 4468 5.661458 TCTTTGTCGATACTCCAATCCTTC 58.339 41.667 0.00 0.00 0.00 3.46
4301 4469 5.186992 TCTTTGTCGATACTCCAATCCTTCA 59.813 40.000 0.00 0.00 0.00 3.02
4302 4470 4.655762 TGTCGATACTCCAATCCTTCAG 57.344 45.455 0.00 0.00 0.00 3.02
4303 4471 3.384789 TGTCGATACTCCAATCCTTCAGG 59.615 47.826 0.00 0.00 0.00 3.86
4304 4472 3.385111 GTCGATACTCCAATCCTTCAGGT 59.615 47.826 0.00 0.00 36.34 4.00
4305 4473 3.637229 TCGATACTCCAATCCTTCAGGTC 59.363 47.826 0.00 0.00 36.34 3.85
4306 4474 3.639094 CGATACTCCAATCCTTCAGGTCT 59.361 47.826 0.00 0.00 36.34 3.85
4307 4475 4.261825 CGATACTCCAATCCTTCAGGTCTC 60.262 50.000 0.00 0.00 36.34 3.36
4308 4476 3.197927 ACTCCAATCCTTCAGGTCTCT 57.802 47.619 0.00 0.00 36.34 3.10
4309 4477 3.103742 ACTCCAATCCTTCAGGTCTCTC 58.896 50.000 0.00 0.00 36.34 3.20
4310 4478 3.245948 ACTCCAATCCTTCAGGTCTCTCT 60.246 47.826 0.00 0.00 36.34 3.10
4311 4479 3.774216 CTCCAATCCTTCAGGTCTCTCTT 59.226 47.826 0.00 0.00 36.34 2.85
4312 4480 4.947883 TCCAATCCTTCAGGTCTCTCTTA 58.052 43.478 0.00 0.00 36.34 2.10
4313 4481 5.342017 TCCAATCCTTCAGGTCTCTCTTAA 58.658 41.667 0.00 0.00 36.34 1.85
4314 4482 5.187967 TCCAATCCTTCAGGTCTCTCTTAAC 59.812 44.000 0.00 0.00 36.34 2.01
4315 4483 4.993029 ATCCTTCAGGTCTCTCTTAACG 57.007 45.455 0.00 0.00 36.34 3.18
4316 4484 3.090037 TCCTTCAGGTCTCTCTTAACGG 58.910 50.000 0.00 0.00 36.34 4.44
4317 4485 3.090037 CCTTCAGGTCTCTCTTAACGGA 58.910 50.000 0.00 0.00 0.00 4.69
4318 4486 3.119424 CCTTCAGGTCTCTCTTAACGGAC 60.119 52.174 0.00 0.00 0.00 4.79
4319 4487 3.436577 TCAGGTCTCTCTTAACGGACT 57.563 47.619 0.00 0.00 0.00 3.85
4320 4488 3.345414 TCAGGTCTCTCTTAACGGACTC 58.655 50.000 0.00 0.00 0.00 3.36
4321 4489 2.424246 CAGGTCTCTCTTAACGGACTCC 59.576 54.545 0.00 0.00 0.00 3.85
4322 4490 2.309458 AGGTCTCTCTTAACGGACTCCT 59.691 50.000 0.00 0.00 0.00 3.69
4323 4491 2.684374 GGTCTCTCTTAACGGACTCCTC 59.316 54.545 0.00 0.00 0.00 3.71
4324 4492 2.684374 GTCTCTCTTAACGGACTCCTCC 59.316 54.545 0.00 0.00 0.00 4.30
4325 4493 2.025898 CTCTCTTAACGGACTCCTCCC 58.974 57.143 0.00 0.00 31.93 4.30
4326 4494 1.356738 TCTCTTAACGGACTCCTCCCA 59.643 52.381 0.00 0.00 31.93 4.37
4327 4495 2.024273 TCTCTTAACGGACTCCTCCCAT 60.024 50.000 0.00 0.00 31.93 4.00
4328 4496 2.101582 CTCTTAACGGACTCCTCCCATG 59.898 54.545 0.00 0.00 31.93 3.66
4329 4497 1.831736 CTTAACGGACTCCTCCCATGT 59.168 52.381 0.00 0.00 31.93 3.21
4330 4498 1.481871 TAACGGACTCCTCCCATGTC 58.518 55.000 0.00 0.00 31.93 3.06
4331 4499 0.544357 AACGGACTCCTCCCATGTCA 60.544 55.000 0.00 0.00 31.93 3.58
4332 4500 0.544357 ACGGACTCCTCCCATGTCAA 60.544 55.000 0.00 0.00 31.93 3.18
4333 4501 0.613260 CGGACTCCTCCCATGTCAAA 59.387 55.000 0.00 0.00 31.93 2.69
4334 4502 1.003118 CGGACTCCTCCCATGTCAAAA 59.997 52.381 0.00 0.00 31.93 2.44
4335 4503 2.356125 CGGACTCCTCCCATGTCAAAAT 60.356 50.000 0.00 0.00 31.93 1.82
4336 4504 3.282885 GGACTCCTCCCATGTCAAAATC 58.717 50.000 0.00 0.00 32.84 2.17
4337 4505 2.939103 GACTCCTCCCATGTCAAAATCG 59.061 50.000 0.00 0.00 0.00 3.34
4338 4506 2.292267 CTCCTCCCATGTCAAAATCGG 58.708 52.381 0.00 0.00 0.00 4.18
4339 4507 1.633432 TCCTCCCATGTCAAAATCGGT 59.367 47.619 0.00 0.00 0.00 4.69
4340 4508 2.017049 CCTCCCATGTCAAAATCGGTC 58.983 52.381 0.00 0.00 0.00 4.79
4341 4509 1.665679 CTCCCATGTCAAAATCGGTCG 59.334 52.381 0.00 0.00 0.00 4.79
4342 4510 1.276705 TCCCATGTCAAAATCGGTCGA 59.723 47.619 0.00 0.00 0.00 4.20
4343 4511 1.396996 CCCATGTCAAAATCGGTCGAC 59.603 52.381 7.13 7.13 0.00 4.20
4344 4512 1.396996 CCATGTCAAAATCGGTCGACC 59.603 52.381 25.28 25.28 0.00 4.79
4345 4513 1.396996 CATGTCAAAATCGGTCGACCC 59.603 52.381 28.52 12.33 0.00 4.46
4346 4514 0.320946 TGTCAAAATCGGTCGACCCC 60.321 55.000 28.52 5.39 0.00 4.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 0.822944 TGTGTCATTGTGGTGCCTGG 60.823 55.000 0.00 0.00 0.00 4.45
144 169 8.508883 AGTAACACATCTCTTAGTAGAACGAT 57.491 34.615 0.00 0.00 0.00 3.73
145 170 7.823310 AGAGTAACACATCTCTTAGTAGAACGA 59.177 37.037 0.00 0.00 37.72 3.85
184 209 1.035139 AAGCAGGGCAAGAACAACAG 58.965 50.000 0.00 0.00 0.00 3.16
186 211 2.204237 CAAAAGCAGGGCAAGAACAAC 58.796 47.619 0.00 0.00 0.00 3.32
372 397 7.556733 TTAAGAGTTTTCCAGCTTCGTTAAA 57.443 32.000 0.00 0.00 0.00 1.52
382 407 8.850156 TCCTTCTTTCAATTAAGAGTTTTCCAG 58.150 33.333 0.00 0.00 35.69 3.86
387 412 9.579932 AGACATCCTTCTTTCAATTAAGAGTTT 57.420 29.630 0.00 0.00 35.69 2.66
692 727 9.407380 TGATGCTGTTTGATAAAACCATATAGT 57.593 29.630 3.10 0.00 31.87 2.12
693 728 9.888878 CTGATGCTGTTTGATAAAACCATATAG 57.111 33.333 3.10 0.00 31.87 1.31
694 729 9.625747 TCTGATGCTGTTTGATAAAACCATATA 57.374 29.630 3.10 0.00 31.87 0.86
710 745 2.636893 AGTTCTCCACTTCTGATGCTGT 59.363 45.455 0.00 0.00 27.32 4.40
717 752 6.148480 CCTTGTTTATCAGTTCTCCACTTCTG 59.852 42.308 0.00 0.00 30.92 3.02
748 783 5.126396 ACTAGCAATTTCAGTTCAAAGGC 57.874 39.130 0.00 0.00 0.00 4.35
827 862 8.730680 CAGTGTCAAAACTATTAGTATTTGCCT 58.269 33.333 17.48 13.05 31.99 4.75
842 877 0.668535 GCCCCAGTCAGTGTCAAAAC 59.331 55.000 0.00 0.00 0.00 2.43
1060 1131 7.716998 TCTCTGTTTTGCTCTCATTTCTAACTT 59.283 33.333 0.00 0.00 0.00 2.66
1153 1224 2.224523 ACGAGGATGACAAAGCTGGAAA 60.225 45.455 0.00 0.00 0.00 3.13
1442 1513 1.203441 TGAGGCATTCCAGGCACTCT 61.203 55.000 0.00 0.00 34.60 3.24
1556 1627 1.665442 GGCCGTTGATGCAAAGGTT 59.335 52.632 12.44 0.00 43.14 3.50
1557 1628 2.625823 CGGCCGTTGATGCAAAGGT 61.626 57.895 19.50 0.00 43.14 3.50
1568 1639 1.375523 GATGTCAAGGTCGGCCGTT 60.376 57.895 27.15 9.73 40.50 4.44
1580 1651 3.242518 CTTCACGTAGAAAGCGATGTCA 58.757 45.455 0.00 0.00 35.40 3.58
1760 1840 1.210931 CGCGTTGAGGTTCCTCGTA 59.789 57.895 13.27 2.53 35.96 3.43
2288 2418 1.961180 GATGGCCAGCTCACCGTAGT 61.961 60.000 15.35 0.00 0.00 2.73
2329 2459 0.615850 CCTTCCCCGAGCTTCTTCTT 59.384 55.000 0.00 0.00 0.00 2.52
2410 2540 2.417719 CTTGGAACCTTTGGAGACTCG 58.582 52.381 0.00 0.00 0.00 4.18
2445 2575 1.399714 TCGTCACCTCGGAAGCATAT 58.600 50.000 0.00 0.00 0.00 1.78
2523 2653 4.400961 ACAAGGAGCAGCTCGCCC 62.401 66.667 16.47 3.24 44.04 6.13
2992 3128 1.982073 GCGGCATCAAGAACCCTTCG 61.982 60.000 0.00 0.00 34.02 3.79
3283 3419 2.885644 CATCGACTTGTCCGCCGG 60.886 66.667 0.00 0.00 0.00 6.13
3485 3650 3.821421 AGGAAGTATAAGCCGTTCTGG 57.179 47.619 0.00 0.00 42.50 3.86
3503 3668 6.081872 AGAGAATGAAAGAAACTGCAAAGG 57.918 37.500 0.00 0.00 0.00 3.11
3535 3700 2.498056 CCACTGGTTTGCACCCCAC 61.498 63.158 0.00 0.00 43.49 4.61
3562 3729 2.555757 GAGTCAAGCCAAGTCTGCAAAT 59.444 45.455 0.00 0.00 0.00 2.32
3567 3734 1.155042 GCTGAGTCAAGCCAAGTCTG 58.845 55.000 0.00 0.00 37.20 3.51
3659 3827 8.740123 TTAGAGACTTGATGAGGTAGTAGAAG 57.260 38.462 0.00 0.00 0.00 2.85
3688 3856 6.944862 GGAACGGAGGGAGTACTATATAAGAA 59.055 42.308 0.00 0.00 0.00 2.52
3697 3865 3.393426 TTATGGAACGGAGGGAGTACT 57.607 47.619 0.00 0.00 0.00 2.73
3698 3866 5.997384 ATATTATGGAACGGAGGGAGTAC 57.003 43.478 0.00 0.00 0.00 2.73
3699 3867 7.472741 TCTTATATTATGGAACGGAGGGAGTA 58.527 38.462 0.00 0.00 0.00 2.59
3700 3868 6.320518 TCTTATATTATGGAACGGAGGGAGT 58.679 40.000 0.00 0.00 0.00 3.85
3701 3869 6.628398 GCTCTTATATTATGGAACGGAGGGAG 60.628 46.154 0.00 0.00 0.00 4.30
3703 3871 5.420409 GCTCTTATATTATGGAACGGAGGG 58.580 45.833 0.00 0.00 0.00 4.30
3705 3873 5.710984 ACGCTCTTATATTATGGAACGGAG 58.289 41.667 0.00 0.00 0.00 4.63
3706 3874 5.717078 ACGCTCTTATATTATGGAACGGA 57.283 39.130 0.00 0.00 0.00 4.69
3707 3875 6.780706 AAACGCTCTTATATTATGGAACGG 57.219 37.500 0.00 0.00 0.00 4.44
3708 3876 8.332464 TCAAAAACGCTCTTATATTATGGAACG 58.668 33.333 0.00 0.00 0.00 3.95
3709 3877 9.434559 GTCAAAAACGCTCTTATATTATGGAAC 57.565 33.333 0.00 0.00 0.00 3.62
3710 3878 9.168451 TGTCAAAAACGCTCTTATATTATGGAA 57.832 29.630 0.00 0.00 0.00 3.53
3711 3879 8.725405 TGTCAAAAACGCTCTTATATTATGGA 57.275 30.769 0.00 0.00 0.00 3.41
3712 3880 9.950680 ATTGTCAAAAACGCTCTTATATTATGG 57.049 29.630 0.00 0.00 0.00 2.74
3716 3884 9.769093 GTGTATTGTCAAAAACGCTCTTATATT 57.231 29.630 7.41 0.00 0.00 1.28
3717 3885 9.162764 AGTGTATTGTCAAAAACGCTCTTATAT 57.837 29.630 10.24 0.00 0.00 0.86
3718 3886 8.542497 AGTGTATTGTCAAAAACGCTCTTATA 57.458 30.769 10.24 0.00 0.00 0.98
3719 3887 7.435068 AGTGTATTGTCAAAAACGCTCTTAT 57.565 32.000 10.24 0.00 0.00 1.73
3720 3888 6.854496 AGTGTATTGTCAAAAACGCTCTTA 57.146 33.333 10.24 0.00 0.00 2.10
3721 3889 5.751243 AGTGTATTGTCAAAAACGCTCTT 57.249 34.783 10.24 0.00 0.00 2.85
3722 3890 5.989777 ACTAGTGTATTGTCAAAAACGCTCT 59.010 36.000 16.47 8.62 34.68 4.09
3723 3891 6.071463 CACTAGTGTATTGTCAAAAACGCTC 58.929 40.000 15.06 3.40 34.68 5.03
3724 3892 5.526111 ACACTAGTGTATTGTCAAAAACGCT 59.474 36.000 26.91 16.92 42.90 5.07
3725 3893 5.744490 ACACTAGTGTATTGTCAAAAACGC 58.256 37.500 26.91 6.80 42.90 4.84
3726 3894 9.705471 TTTTACACTAGTGTATTGTCAAAAACG 57.295 29.630 31.05 0.65 44.54 3.60
3753 3921 8.899771 CCCTCTGTTCCATAATATAAAAACGTT 58.100 33.333 0.00 0.00 0.00 3.99
3754 3922 8.269317 TCCCTCTGTTCCATAATATAAAAACGT 58.731 33.333 0.00 0.00 0.00 3.99
3755 3923 8.671384 TCCCTCTGTTCCATAATATAAAAACG 57.329 34.615 0.00 0.00 0.00 3.60
3756 3924 9.628500 ACTCCCTCTGTTCCATAATATAAAAAC 57.372 33.333 0.00 0.00 0.00 2.43
3762 3930 8.949421 ACAAATACTCCCTCTGTTCCATAATAT 58.051 33.333 0.00 0.00 0.00 1.28
3763 3931 8.331931 ACAAATACTCCCTCTGTTCCATAATA 57.668 34.615 0.00 0.00 0.00 0.98
3764 3932 7.213178 ACAAATACTCCCTCTGTTCCATAAT 57.787 36.000 0.00 0.00 0.00 1.28
3765 3933 6.636454 ACAAATACTCCCTCTGTTCCATAA 57.364 37.500 0.00 0.00 0.00 1.90
3766 3934 6.636454 AACAAATACTCCCTCTGTTCCATA 57.364 37.500 0.00 0.00 0.00 2.74
3767 3935 5.520748 AACAAATACTCCCTCTGTTCCAT 57.479 39.130 0.00 0.00 0.00 3.41
3768 3936 4.993705 AACAAATACTCCCTCTGTTCCA 57.006 40.909 0.00 0.00 0.00 3.53
3769 3937 6.235664 TGTAAACAAATACTCCCTCTGTTCC 58.764 40.000 0.00 0.00 30.16 3.62
3770 3938 7.094762 CCTTGTAAACAAATACTCCCTCTGTTC 60.095 40.741 0.00 0.00 35.15 3.18
3771 3939 6.715264 CCTTGTAAACAAATACTCCCTCTGTT 59.285 38.462 0.00 0.00 35.15 3.16
3772 3940 6.043938 TCCTTGTAAACAAATACTCCCTCTGT 59.956 38.462 0.00 0.00 35.15 3.41
3773 3941 6.472887 TCCTTGTAAACAAATACTCCCTCTG 58.527 40.000 0.00 0.00 35.15 3.35
3774 3942 6.697641 TCCTTGTAAACAAATACTCCCTCT 57.302 37.500 0.00 0.00 35.15 3.69
3775 3943 6.940867 ACTTCCTTGTAAACAAATACTCCCTC 59.059 38.462 0.00 0.00 35.15 4.30
3776 3944 6.849151 ACTTCCTTGTAAACAAATACTCCCT 58.151 36.000 0.00 0.00 35.15 4.20
3777 3945 7.881751 AGTACTTCCTTGTAAACAAATACTCCC 59.118 37.037 0.00 0.00 35.15 4.30
3778 3946 8.843885 AGTACTTCCTTGTAAACAAATACTCC 57.156 34.615 0.00 0.00 35.15 3.85
3782 3950 9.979578 TCGTTAGTACTTCCTTGTAAACAAATA 57.020 29.630 0.00 0.00 35.15 1.40
3783 3951 8.768019 GTCGTTAGTACTTCCTTGTAAACAAAT 58.232 33.333 0.00 0.00 35.15 2.32
3784 3952 7.043458 CGTCGTTAGTACTTCCTTGTAAACAAA 60.043 37.037 0.00 0.00 35.15 2.83
3785 3953 6.417635 CGTCGTTAGTACTTCCTTGTAAACAA 59.582 38.462 0.00 0.00 0.00 2.83
3786 3954 5.914635 CGTCGTTAGTACTTCCTTGTAAACA 59.085 40.000 0.00 0.00 0.00 2.83
3787 3955 5.915196 ACGTCGTTAGTACTTCCTTGTAAAC 59.085 40.000 0.00 0.00 0.00 2.01
3788 3956 6.072112 ACGTCGTTAGTACTTCCTTGTAAA 57.928 37.500 0.00 0.00 0.00 2.01
3789 3957 5.689383 ACGTCGTTAGTACTTCCTTGTAA 57.311 39.130 0.00 0.00 0.00 2.41
3790 3958 5.238432 TCAACGTCGTTAGTACTTCCTTGTA 59.762 40.000 10.86 0.00 0.00 2.41
3791 3959 4.036734 TCAACGTCGTTAGTACTTCCTTGT 59.963 41.667 10.86 0.00 0.00 3.16
3792 3960 4.539870 TCAACGTCGTTAGTACTTCCTTG 58.460 43.478 10.86 0.00 0.00 3.61
3793 3961 4.836125 TCAACGTCGTTAGTACTTCCTT 57.164 40.909 10.86 0.00 0.00 3.36
3990 4158 1.986378 CAACTTTGAGTCGCTCCTACG 59.014 52.381 4.73 0.00 0.00 3.51
4019 4187 4.155099 CACACATTCACATTTTACGCCCTA 59.845 41.667 0.00 0.00 0.00 3.53
4054 4222 5.675684 AGGCACAATGGGTAAAAATAAGG 57.324 39.130 0.00 0.00 0.00 2.69
4087 4255 6.425721 GTGCTAAACTGGAGTACACATGTAAA 59.574 38.462 0.00 0.00 31.52 2.01
4100 4268 5.883673 AGTACAAAACAAGTGCTAAACTGGA 59.116 36.000 0.00 0.00 39.81 3.86
4128 4296 6.742718 TGTTGTTGTTTTTGTTGTTGTTGTTG 59.257 30.769 0.00 0.00 0.00 3.33
4129 4297 6.842163 TGTTGTTGTTTTTGTTGTTGTTGTT 58.158 28.000 0.00 0.00 0.00 2.83
4130 4298 6.422776 TGTTGTTGTTTTTGTTGTTGTTGT 57.577 29.167 0.00 0.00 0.00 3.32
4131 4299 6.742718 TGTTGTTGTTGTTTTTGTTGTTGTTG 59.257 30.769 0.00 0.00 0.00 3.33
4132 4300 6.842163 TGTTGTTGTTGTTTTTGTTGTTGTT 58.158 28.000 0.00 0.00 0.00 2.83
4133 4301 6.422776 TGTTGTTGTTGTTTTTGTTGTTGT 57.577 29.167 0.00 0.00 0.00 3.32
4134 4302 7.512733 GCTTTGTTGTTGTTGTTTTTGTTGTTG 60.513 33.333 0.00 0.00 0.00 3.33
4135 4303 6.470556 GCTTTGTTGTTGTTGTTTTTGTTGTT 59.529 30.769 0.00 0.00 0.00 2.83
4136 4304 5.968261 GCTTTGTTGTTGTTGTTTTTGTTGT 59.032 32.000 0.00 0.00 0.00 3.32
4137 4305 5.397828 GGCTTTGTTGTTGTTGTTTTTGTTG 59.602 36.000 0.00 0.00 0.00 3.33
4138 4306 5.298026 AGGCTTTGTTGTTGTTGTTTTTGTT 59.702 32.000 0.00 0.00 0.00 2.83
4139 4307 4.819088 AGGCTTTGTTGTTGTTGTTTTTGT 59.181 33.333 0.00 0.00 0.00 2.83
4140 4308 5.355467 AGGCTTTGTTGTTGTTGTTTTTG 57.645 34.783 0.00 0.00 0.00 2.44
4141 4309 6.384258 AAAGGCTTTGTTGTTGTTGTTTTT 57.616 29.167 12.53 0.00 0.00 1.94
4142 4310 6.708502 ACTAAAGGCTTTGTTGTTGTTGTTTT 59.291 30.769 22.32 0.00 0.00 2.43
4143 4311 6.227522 ACTAAAGGCTTTGTTGTTGTTGTTT 58.772 32.000 22.32 0.00 0.00 2.83
4144 4312 5.789521 ACTAAAGGCTTTGTTGTTGTTGTT 58.210 33.333 22.32 0.00 0.00 2.83
4145 4313 5.400066 ACTAAAGGCTTTGTTGTTGTTGT 57.600 34.783 22.32 0.00 0.00 3.32
4146 4314 4.803613 GGACTAAAGGCTTTGTTGTTGTTG 59.196 41.667 22.32 0.00 0.00 3.33
4147 4315 4.142026 GGGACTAAAGGCTTTGTTGTTGTT 60.142 41.667 22.32 0.00 0.00 2.83
4148 4316 3.383505 GGGACTAAAGGCTTTGTTGTTGT 59.616 43.478 22.32 10.58 0.00 3.32
4149 4317 3.383185 TGGGACTAAAGGCTTTGTTGTTG 59.617 43.478 22.32 7.79 0.00 3.33
4150 4318 3.637769 TGGGACTAAAGGCTTTGTTGTT 58.362 40.909 22.32 1.84 0.00 2.83
4151 4319 3.306472 TGGGACTAAAGGCTTTGTTGT 57.694 42.857 22.32 16.69 0.00 3.32
4152 4320 4.142049 TGTTTGGGACTAAAGGCTTTGTTG 60.142 41.667 22.32 13.85 0.00 3.33
4153 4321 4.027437 TGTTTGGGACTAAAGGCTTTGTT 58.973 39.130 22.32 8.73 0.00 2.83
4154 4322 3.637769 TGTTTGGGACTAAAGGCTTTGT 58.362 40.909 22.32 16.86 0.00 2.83
4155 4323 4.099419 ACTTGTTTGGGACTAAAGGCTTTG 59.901 41.667 22.32 13.97 0.00 2.77
4156 4324 4.286707 ACTTGTTTGGGACTAAAGGCTTT 58.713 39.130 17.76 17.76 0.00 3.51
4157 4325 3.910989 ACTTGTTTGGGACTAAAGGCTT 58.089 40.909 0.00 0.00 0.00 4.35
4158 4326 3.595190 ACTTGTTTGGGACTAAAGGCT 57.405 42.857 0.00 0.00 0.00 4.58
4159 4327 3.977427 CAACTTGTTTGGGACTAAAGGC 58.023 45.455 0.00 0.00 0.00 4.35
4170 4338 1.995376 AGCCTACCCCAACTTGTTTG 58.005 50.000 0.00 0.00 34.63 2.93
4171 4339 2.983898 TCTAGCCTACCCCAACTTGTTT 59.016 45.455 0.00 0.00 0.00 2.83
4172 4340 2.572104 CTCTAGCCTACCCCAACTTGTT 59.428 50.000 0.00 0.00 0.00 2.83
4173 4341 2.188817 CTCTAGCCTACCCCAACTTGT 58.811 52.381 0.00 0.00 0.00 3.16
4174 4342 1.486726 CCTCTAGCCTACCCCAACTTG 59.513 57.143 0.00 0.00 0.00 3.16
4175 4343 1.080666 ACCTCTAGCCTACCCCAACTT 59.919 52.381 0.00 0.00 0.00 2.66
4176 4344 0.717196 ACCTCTAGCCTACCCCAACT 59.283 55.000 0.00 0.00 0.00 3.16
4177 4345 0.831307 CACCTCTAGCCTACCCCAAC 59.169 60.000 0.00 0.00 0.00 3.77
4178 4346 0.714180 TCACCTCTAGCCTACCCCAA 59.286 55.000 0.00 0.00 0.00 4.12
4179 4347 0.714180 TTCACCTCTAGCCTACCCCA 59.286 55.000 0.00 0.00 0.00 4.96
4180 4348 1.485480 GTTTCACCTCTAGCCTACCCC 59.515 57.143 0.00 0.00 0.00 4.95
4181 4349 1.485480 GGTTTCACCTCTAGCCTACCC 59.515 57.143 0.00 0.00 34.73 3.69
4182 4350 1.485480 GGGTTTCACCTCTAGCCTACC 59.515 57.143 0.00 0.00 38.64 3.18
4183 4351 2.185387 TGGGTTTCACCTCTAGCCTAC 58.815 52.381 0.00 0.00 38.64 3.18
4184 4352 2.634639 TGGGTTTCACCTCTAGCCTA 57.365 50.000 0.00 0.00 38.64 3.93
4185 4353 1.972588 ATGGGTTTCACCTCTAGCCT 58.027 50.000 0.00 0.00 38.64 4.58
4186 4354 3.454812 TCTTATGGGTTTCACCTCTAGCC 59.545 47.826 0.00 0.00 38.64 3.93
4187 4355 4.755266 TCTTATGGGTTTCACCTCTAGC 57.245 45.455 0.00 0.00 38.64 3.42
4188 4356 6.515862 CGAGATCTTATGGGTTTCACCTCTAG 60.516 46.154 0.00 0.00 38.64 2.43
4189 4357 5.302059 CGAGATCTTATGGGTTTCACCTCTA 59.698 44.000 0.00 0.00 38.64 2.43
4190 4358 4.100189 CGAGATCTTATGGGTTTCACCTCT 59.900 45.833 0.00 0.00 38.64 3.69
4191 4359 4.372656 CGAGATCTTATGGGTTTCACCTC 58.627 47.826 0.00 0.00 38.64 3.85
4192 4360 3.432326 GCGAGATCTTATGGGTTTCACCT 60.432 47.826 0.00 0.00 38.64 4.00
4193 4361 2.872858 GCGAGATCTTATGGGTTTCACC 59.127 50.000 0.00 0.00 37.60 4.02
4194 4362 3.531538 TGCGAGATCTTATGGGTTTCAC 58.468 45.455 0.00 0.00 0.00 3.18
4195 4363 3.904800 TGCGAGATCTTATGGGTTTCA 57.095 42.857 0.00 0.00 0.00 2.69
4196 4364 3.312697 GGTTGCGAGATCTTATGGGTTTC 59.687 47.826 0.00 0.00 0.00 2.78
4197 4365 3.279434 GGTTGCGAGATCTTATGGGTTT 58.721 45.455 0.00 0.00 0.00 3.27
4198 4366 2.238646 TGGTTGCGAGATCTTATGGGTT 59.761 45.455 0.00 0.00 0.00 4.11
4199 4367 1.837439 TGGTTGCGAGATCTTATGGGT 59.163 47.619 0.00 0.00 0.00 4.51
4200 4368 2.614057 GTTGGTTGCGAGATCTTATGGG 59.386 50.000 0.00 0.00 0.00 4.00
4201 4369 3.535561 AGTTGGTTGCGAGATCTTATGG 58.464 45.455 0.00 0.00 0.00 2.74
4202 4370 4.183865 TGAGTTGGTTGCGAGATCTTATG 58.816 43.478 0.00 0.00 0.00 1.90
4203 4371 4.471904 TGAGTTGGTTGCGAGATCTTAT 57.528 40.909 0.00 0.00 0.00 1.73
4204 4372 3.953712 TGAGTTGGTTGCGAGATCTTA 57.046 42.857 0.00 0.00 0.00 2.10
4205 4373 2.839486 TGAGTTGGTTGCGAGATCTT 57.161 45.000 0.00 0.00 0.00 2.40
4206 4374 2.625737 CATGAGTTGGTTGCGAGATCT 58.374 47.619 0.00 0.00 0.00 2.75
4207 4375 1.667724 CCATGAGTTGGTTGCGAGATC 59.332 52.381 0.00 0.00 40.99 2.75
4208 4376 1.742761 CCATGAGTTGGTTGCGAGAT 58.257 50.000 0.00 0.00 40.99 2.75
4209 4377 3.231734 CCATGAGTTGGTTGCGAGA 57.768 52.632 0.00 0.00 40.99 4.04
4218 4386 0.607217 TGTGCCAGAGCCATGAGTTG 60.607 55.000 0.00 0.00 38.69 3.16
4219 4387 0.330604 ATGTGCCAGAGCCATGAGTT 59.669 50.000 0.00 0.00 38.69 3.01
4220 4388 0.393944 CATGTGCCAGAGCCATGAGT 60.394 55.000 0.00 0.00 44.14 3.41
4221 4389 1.101635 CCATGTGCCAGAGCCATGAG 61.102 60.000 14.22 5.17 44.14 2.90
4222 4390 1.077285 CCATGTGCCAGAGCCATGA 60.077 57.895 14.22 0.00 44.14 3.07
4223 4391 0.467474 ATCCATGTGCCAGAGCCATG 60.467 55.000 8.59 8.59 42.54 3.66
4224 4392 1.073444 CTATCCATGTGCCAGAGCCAT 59.927 52.381 0.00 0.00 38.69 4.40
4225 4393 0.471191 CTATCCATGTGCCAGAGCCA 59.529 55.000 0.00 0.00 38.69 4.75
4226 4394 0.888285 GCTATCCATGTGCCAGAGCC 60.888 60.000 0.00 0.00 38.69 4.70
4227 4395 0.179037 TGCTATCCATGTGCCAGAGC 60.179 55.000 0.00 0.00 40.48 4.09
4228 4396 2.219458 CTTGCTATCCATGTGCCAGAG 58.781 52.381 0.00 0.00 0.00 3.35
4229 4397 1.748244 GCTTGCTATCCATGTGCCAGA 60.748 52.381 0.00 0.00 0.00 3.86
4230 4398 0.666913 GCTTGCTATCCATGTGCCAG 59.333 55.000 0.00 0.00 0.00 4.85
4231 4399 0.256752 AGCTTGCTATCCATGTGCCA 59.743 50.000 0.00 0.00 0.00 4.92
4232 4400 1.336125 GAAGCTTGCTATCCATGTGCC 59.664 52.381 2.10 0.00 0.00 5.01
4233 4401 1.336125 GGAAGCTTGCTATCCATGTGC 59.664 52.381 11.19 0.00 33.30 4.57
4234 4402 2.357009 GTGGAAGCTTGCTATCCATGTG 59.643 50.000 19.34 0.00 44.55 3.21
4235 4403 2.648059 GTGGAAGCTTGCTATCCATGT 58.352 47.619 19.34 0.00 44.55 3.21
4236 4404 1.600957 CGTGGAAGCTTGCTATCCATG 59.399 52.381 19.34 20.51 44.55 3.66
4237 4405 1.959042 CGTGGAAGCTTGCTATCCAT 58.041 50.000 19.34 0.00 44.55 3.41
4238 4406 0.744414 GCGTGGAAGCTTGCTATCCA 60.744 55.000 19.34 9.80 40.84 3.41
4239 4407 0.744414 TGCGTGGAAGCTTGCTATCC 60.744 55.000 19.34 6.99 38.13 2.59
4240 4408 0.375106 GTGCGTGGAAGCTTGCTATC 59.625 55.000 19.34 8.59 38.13 2.08
4241 4409 1.026718 GGTGCGTGGAAGCTTGCTAT 61.027 55.000 19.34 0.00 38.13 2.97
4242 4410 1.671054 GGTGCGTGGAAGCTTGCTA 60.671 57.895 19.34 2.82 38.13 3.49
4243 4411 2.980233 GGTGCGTGGAAGCTTGCT 60.980 61.111 19.34 0.00 38.13 3.91
4244 4412 4.043200 GGGTGCGTGGAAGCTTGC 62.043 66.667 11.58 11.58 38.13 4.01
4245 4413 3.365265 GGGGTGCGTGGAAGCTTG 61.365 66.667 2.10 0.00 38.13 4.01
4246 4414 3.570212 AGGGGTGCGTGGAAGCTT 61.570 61.111 0.00 0.00 38.13 3.74
4247 4415 4.335647 CAGGGGTGCGTGGAAGCT 62.336 66.667 0.00 0.00 38.13 3.74
4248 4416 4.643387 ACAGGGGTGCGTGGAAGC 62.643 66.667 0.00 0.00 37.71 3.86
4249 4417 2.358737 GACAGGGGTGCGTGGAAG 60.359 66.667 0.00 0.00 0.00 3.46
4250 4418 3.948719 GGACAGGGGTGCGTGGAA 61.949 66.667 0.00 0.00 0.00 3.53
4252 4420 2.593468 CTATGGACAGGGGTGCGTGG 62.593 65.000 0.00 0.00 38.35 4.94
4253 4421 1.153369 CTATGGACAGGGGTGCGTG 60.153 63.158 0.00 0.00 38.35 5.34
4254 4422 3.031417 GCTATGGACAGGGGTGCGT 62.031 63.158 0.00 0.00 38.35 5.24
4255 4423 1.399744 TAGCTATGGACAGGGGTGCG 61.400 60.000 0.00 0.00 38.35 5.34
4256 4424 0.394565 CTAGCTATGGACAGGGGTGC 59.605 60.000 0.00 0.00 35.66 5.01
4257 4425 0.394565 GCTAGCTATGGACAGGGGTG 59.605 60.000 7.70 0.00 0.00 4.61
4258 4426 0.266152 AGCTAGCTATGGACAGGGGT 59.734 55.000 17.69 0.00 0.00 4.95
4259 4427 0.972883 GAGCTAGCTATGGACAGGGG 59.027 60.000 19.38 0.00 0.00 4.79
4260 4428 2.008242 AGAGCTAGCTATGGACAGGG 57.992 55.000 19.38 0.00 0.00 4.45
4261 4429 3.133721 ACAAAGAGCTAGCTATGGACAGG 59.866 47.826 19.38 4.81 0.00 4.00
4262 4430 4.367450 GACAAAGAGCTAGCTATGGACAG 58.633 47.826 19.38 6.25 0.00 3.51
4263 4431 3.181486 CGACAAAGAGCTAGCTATGGACA 60.181 47.826 19.38 0.00 0.00 4.02
4264 4432 3.066900 TCGACAAAGAGCTAGCTATGGAC 59.933 47.826 19.38 10.10 0.00 4.02
4265 4433 3.288092 TCGACAAAGAGCTAGCTATGGA 58.712 45.455 19.38 8.12 0.00 3.41
4266 4434 3.717400 TCGACAAAGAGCTAGCTATGG 57.283 47.619 19.38 13.23 0.00 2.74
4267 4435 6.007936 AGTATCGACAAAGAGCTAGCTATG 57.992 41.667 19.38 18.66 0.00 2.23
4268 4436 5.182380 GGAGTATCGACAAAGAGCTAGCTAT 59.818 44.000 19.38 12.73 34.37 2.97
4269 4437 4.515944 GGAGTATCGACAAAGAGCTAGCTA 59.484 45.833 19.38 0.00 34.37 3.32
4270 4438 3.316868 GGAGTATCGACAAAGAGCTAGCT 59.683 47.826 19.45 19.45 34.37 3.32
4271 4439 3.066900 TGGAGTATCGACAAAGAGCTAGC 59.933 47.826 6.62 6.62 34.37 3.42
4272 4440 4.902443 TGGAGTATCGACAAAGAGCTAG 57.098 45.455 0.00 0.00 34.37 3.42
4273 4441 5.221263 GGATTGGAGTATCGACAAAGAGCTA 60.221 44.000 0.00 0.00 34.37 3.32
4274 4442 4.442192 GGATTGGAGTATCGACAAAGAGCT 60.442 45.833 0.00 0.00 34.37 4.09
4275 4443 3.804873 GGATTGGAGTATCGACAAAGAGC 59.195 47.826 0.00 0.00 34.37 4.09
4276 4444 5.269505 AGGATTGGAGTATCGACAAAGAG 57.730 43.478 0.00 0.00 34.37 2.85
4277 4445 5.186992 TGAAGGATTGGAGTATCGACAAAGA 59.813 40.000 0.00 0.00 34.37 2.52
4278 4446 5.419542 TGAAGGATTGGAGTATCGACAAAG 58.580 41.667 0.00 0.00 34.37 2.77
4279 4447 5.414789 TGAAGGATTGGAGTATCGACAAA 57.585 39.130 0.00 0.00 34.37 2.83
4280 4448 4.141937 CCTGAAGGATTGGAGTATCGACAA 60.142 45.833 0.00 0.00 37.39 3.18
4281 4449 3.384789 CCTGAAGGATTGGAGTATCGACA 59.615 47.826 0.00 0.00 37.39 4.35
4282 4450 3.385111 ACCTGAAGGATTGGAGTATCGAC 59.615 47.826 2.62 0.00 38.94 4.20
4283 4451 3.637229 GACCTGAAGGATTGGAGTATCGA 59.363 47.826 2.62 0.00 38.94 3.59
4284 4452 3.639094 AGACCTGAAGGATTGGAGTATCG 59.361 47.826 2.62 0.00 38.94 2.92
4285 4453 4.898861 AGAGACCTGAAGGATTGGAGTATC 59.101 45.833 2.62 0.00 38.94 2.24
4286 4454 4.889780 AGAGACCTGAAGGATTGGAGTAT 58.110 43.478 2.62 0.00 38.94 2.12
4287 4455 4.017037 AGAGAGACCTGAAGGATTGGAGTA 60.017 45.833 2.62 0.00 38.94 2.59
4288 4456 3.103742 GAGAGACCTGAAGGATTGGAGT 58.896 50.000 2.62 0.00 38.94 3.85
4289 4457 3.373830 AGAGAGACCTGAAGGATTGGAG 58.626 50.000 2.62 0.00 38.94 3.86
4290 4458 3.481559 AGAGAGACCTGAAGGATTGGA 57.518 47.619 2.62 0.00 38.94 3.53
4291 4459 5.423886 GTTAAGAGAGACCTGAAGGATTGG 58.576 45.833 2.62 0.00 38.94 3.16
4292 4460 5.105752 CGTTAAGAGAGACCTGAAGGATTG 58.894 45.833 2.62 0.00 38.94 2.67
4293 4461 4.160626 CCGTTAAGAGAGACCTGAAGGATT 59.839 45.833 2.62 0.00 38.94 3.01
4294 4462 3.702045 CCGTTAAGAGAGACCTGAAGGAT 59.298 47.826 2.62 0.00 38.94 3.24
4295 4463 3.090037 CCGTTAAGAGAGACCTGAAGGA 58.910 50.000 2.62 0.00 38.94 3.36
4296 4464 3.090037 TCCGTTAAGAGAGACCTGAAGG 58.910 50.000 0.00 0.00 42.17 3.46
4297 4465 3.759618 AGTCCGTTAAGAGAGACCTGAAG 59.240 47.826 0.00 0.00 0.00 3.02
4298 4466 3.757493 GAGTCCGTTAAGAGAGACCTGAA 59.243 47.826 0.00 0.00 0.00 3.02
4299 4467 3.345414 GAGTCCGTTAAGAGAGACCTGA 58.655 50.000 0.00 0.00 0.00 3.86
4300 4468 2.424246 GGAGTCCGTTAAGAGAGACCTG 59.576 54.545 0.00 0.00 0.00 4.00
4301 4469 2.309458 AGGAGTCCGTTAAGAGAGACCT 59.691 50.000 2.76 0.00 0.00 3.85
4302 4470 2.684374 GAGGAGTCCGTTAAGAGAGACC 59.316 54.545 2.76 0.00 0.00 3.85
4303 4471 2.684374 GGAGGAGTCCGTTAAGAGAGAC 59.316 54.545 2.76 0.00 31.37 3.36
4304 4472 2.356947 GGGAGGAGTCCGTTAAGAGAGA 60.357 54.545 2.76 0.00 45.05 3.10
4305 4473 2.025898 GGGAGGAGTCCGTTAAGAGAG 58.974 57.143 2.76 0.00 45.05 3.20
4306 4474 1.356738 TGGGAGGAGTCCGTTAAGAGA 59.643 52.381 2.76 0.00 45.05 3.10
4307 4475 1.848652 TGGGAGGAGTCCGTTAAGAG 58.151 55.000 2.76 0.00 45.05 2.85
4308 4476 2.108168 CATGGGAGGAGTCCGTTAAGA 58.892 52.381 2.76 0.00 45.05 2.10
4309 4477 1.831736 ACATGGGAGGAGTCCGTTAAG 59.168 52.381 2.76 0.00 45.05 1.85
4310 4478 1.829222 GACATGGGAGGAGTCCGTTAA 59.171 52.381 2.76 0.00 45.05 2.01
4311 4479 1.272816 TGACATGGGAGGAGTCCGTTA 60.273 52.381 2.76 0.00 45.05 3.18
4312 4480 0.544357 TGACATGGGAGGAGTCCGTT 60.544 55.000 2.76 0.00 45.05 4.44
4313 4481 0.544357 TTGACATGGGAGGAGTCCGT 60.544 55.000 2.76 0.00 45.05 4.69
4314 4482 0.613260 TTTGACATGGGAGGAGTCCG 59.387 55.000 2.76 0.00 45.05 4.79
4315 4483 2.879103 TTTTGACATGGGAGGAGTCC 57.121 50.000 0.00 0.00 43.05 3.85
4316 4484 2.939103 CGATTTTGACATGGGAGGAGTC 59.061 50.000 0.00 0.00 0.00 3.36
4317 4485 2.356125 CCGATTTTGACATGGGAGGAGT 60.356 50.000 0.00 0.00 0.00 3.85
4318 4486 2.292267 CCGATTTTGACATGGGAGGAG 58.708 52.381 0.00 0.00 0.00 3.69
4319 4487 1.633432 ACCGATTTTGACATGGGAGGA 59.367 47.619 0.00 0.00 0.00 3.71
4320 4488 2.017049 GACCGATTTTGACATGGGAGG 58.983 52.381 0.00 0.00 0.00 4.30
4321 4489 1.665679 CGACCGATTTTGACATGGGAG 59.334 52.381 0.00 0.00 0.00 4.30
4322 4490 1.276705 TCGACCGATTTTGACATGGGA 59.723 47.619 0.00 0.00 0.00 4.37
4323 4491 1.396996 GTCGACCGATTTTGACATGGG 59.603 52.381 3.51 0.00 31.01 4.00
4324 4492 1.396996 GGTCGACCGATTTTGACATGG 59.603 52.381 20.85 0.00 32.13 3.66
4325 4493 1.396996 GGGTCGACCGATTTTGACATG 59.603 52.381 27.68 0.00 36.71 3.21
4326 4494 1.677820 GGGGTCGACCGATTTTGACAT 60.678 52.381 27.68 0.00 41.60 3.06
4327 4495 0.320946 GGGGTCGACCGATTTTGACA 60.321 55.000 27.68 0.00 41.60 3.58
4328 4496 2.463592 GGGGTCGACCGATTTTGAC 58.536 57.895 27.68 11.35 41.60 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.