Multiple sequence alignment - TraesCS5A01G051600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G051600 chr5A 100.000 3629 0 0 1 3629 46703031 46706659 0.000000e+00 6702
1 TraesCS5A01G051600 chr5A 97.348 264 7 0 1 264 77408206 77408469 1.990000e-122 449
2 TraesCS5A01G051600 chr5A 96.970 264 8 0 1 264 238137155 238136892 9.250000e-121 444
3 TraesCS5A01G051600 chr5B 94.155 3268 140 24 379 3628 63532504 63535738 0.000000e+00 4929
4 TraesCS5A01G051600 chr5B 96.321 2446 83 5 860 3301 62033695 62031253 0.000000e+00 4012
5 TraesCS5A01G051600 chr5D 95.302 2448 104 7 861 3301 58496617 58499060 0.000000e+00 3873
6 TraesCS5A01G051600 chr2A 97.348 264 7 0 1 264 434640856 434640593 1.990000e-122 449
7 TraesCS5A01G051600 chr1A 97.348 264 6 1 1 264 85483278 85483016 7.150000e-122 448
8 TraesCS5A01G051600 chr7A 96.970 264 8 0 1 264 217302449 217302712 9.250000e-121 444
9 TraesCS5A01G051600 chr7A 96.970 264 8 0 1 264 399216344 399216081 9.250000e-121 444
10 TraesCS5A01G051600 chr4A 96.970 264 8 0 1 264 123324104 123324367 9.250000e-121 444
11 TraesCS5A01G051600 chr4A 96.970 264 8 0 1 264 252713006 252712743 9.250000e-121 444
12 TraesCS5A01G051600 chr4A 96.970 264 8 0 1 264 522840899 522841162 9.250000e-121 444


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G051600 chr5A 46703031 46706659 3628 False 6702 6702 100.000 1 3629 1 chr5A.!!$F1 3628
1 TraesCS5A01G051600 chr5B 63532504 63535738 3234 False 4929 4929 94.155 379 3628 1 chr5B.!!$F1 3249
2 TraesCS5A01G051600 chr5B 62031253 62033695 2442 True 4012 4012 96.321 860 3301 1 chr5B.!!$R1 2441
3 TraesCS5A01G051600 chr5D 58496617 58499060 2443 False 3873 3873 95.302 861 3301 1 chr5D.!!$F1 2440

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
833 838 0.179020 TGGGCTTGTGTGAGAGTTGG 60.179 55.0 0.00 0.00 0.0 3.77 F
850 855 0.313672 TGGAGGAATTTGCGCAACAC 59.686 50.0 24.99 16.24 0.0 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2179 2205 0.109412 GTGCTTGTTGCCAGATCAGC 60.109 55.000 0.0 0.0 42.00 4.26 R
2717 2743 2.181975 CATCCCAAAGGGCAATCAACT 58.818 47.619 0.0 0.0 43.94 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.432350 AGAAAATGTAGAGTCTTGAGCTTTG 57.568 36.000 0.00 0.00 0.00 2.77
25 26 7.220030 AGAAAATGTAGAGTCTTGAGCTTTGA 58.780 34.615 0.00 0.00 0.00 2.69
26 27 7.387397 AGAAAATGTAGAGTCTTGAGCTTTGAG 59.613 37.037 0.00 0.00 0.00 3.02
27 28 3.919216 TGTAGAGTCTTGAGCTTTGAGC 58.081 45.455 0.00 0.00 42.84 4.26
38 39 2.274920 GCTTTGAGCTTGAGCCAATC 57.725 50.000 0.00 0.00 43.38 2.67
39 40 1.135170 GCTTTGAGCTTGAGCCAATCC 60.135 52.381 0.00 0.00 43.38 3.01
40 41 2.444421 CTTTGAGCTTGAGCCAATCCT 58.556 47.619 0.00 0.00 43.38 3.24
41 42 2.592102 TTGAGCTTGAGCCAATCCTT 57.408 45.000 0.00 0.00 43.38 3.36
42 43 2.592102 TGAGCTTGAGCCAATCCTTT 57.408 45.000 0.00 0.00 43.38 3.11
43 44 2.880443 TGAGCTTGAGCCAATCCTTTT 58.120 42.857 0.00 0.00 43.38 2.27
44 45 2.559668 TGAGCTTGAGCCAATCCTTTTG 59.440 45.455 0.00 0.00 43.38 2.44
45 46 2.560105 GAGCTTGAGCCAATCCTTTTGT 59.440 45.455 0.00 0.00 43.38 2.83
46 47 2.560105 AGCTTGAGCCAATCCTTTTGTC 59.440 45.455 0.00 0.00 43.38 3.18
47 48 2.353109 GCTTGAGCCAATCCTTTTGTCC 60.353 50.000 0.00 0.00 34.31 4.02
48 49 2.978156 TGAGCCAATCCTTTTGTCCT 57.022 45.000 0.00 0.00 0.00 3.85
49 50 3.243359 TGAGCCAATCCTTTTGTCCTT 57.757 42.857 0.00 0.00 0.00 3.36
50 51 4.380843 TGAGCCAATCCTTTTGTCCTTA 57.619 40.909 0.00 0.00 0.00 2.69
51 52 4.335416 TGAGCCAATCCTTTTGTCCTTAG 58.665 43.478 0.00 0.00 0.00 2.18
52 53 3.092301 AGCCAATCCTTTTGTCCTTAGC 58.908 45.455 0.00 0.00 0.00 3.09
53 54 2.825532 GCCAATCCTTTTGTCCTTAGCA 59.174 45.455 0.00 0.00 0.00 3.49
54 55 3.448660 GCCAATCCTTTTGTCCTTAGCAT 59.551 43.478 0.00 0.00 0.00 3.79
55 56 4.081476 GCCAATCCTTTTGTCCTTAGCATT 60.081 41.667 0.00 0.00 0.00 3.56
56 57 5.569428 GCCAATCCTTTTGTCCTTAGCATTT 60.569 40.000 0.00 0.00 0.00 2.32
57 58 6.466812 CCAATCCTTTTGTCCTTAGCATTTT 58.533 36.000 0.00 0.00 0.00 1.82
58 59 6.369615 CCAATCCTTTTGTCCTTAGCATTTTG 59.630 38.462 0.00 0.00 0.00 2.44
59 60 6.916360 ATCCTTTTGTCCTTAGCATTTTGA 57.084 33.333 0.00 0.00 0.00 2.69
60 61 6.331369 TCCTTTTGTCCTTAGCATTTTGAG 57.669 37.500 0.00 0.00 0.00 3.02
61 62 5.243730 TCCTTTTGTCCTTAGCATTTTGAGG 59.756 40.000 0.00 0.00 0.00 3.86
62 63 5.467035 TTTTGTCCTTAGCATTTTGAGGG 57.533 39.130 0.00 0.00 0.00 4.30
63 64 4.380843 TTGTCCTTAGCATTTTGAGGGA 57.619 40.909 0.00 0.00 0.00 4.20
64 65 4.591321 TGTCCTTAGCATTTTGAGGGAT 57.409 40.909 0.00 0.00 0.00 3.85
65 66 4.272489 TGTCCTTAGCATTTTGAGGGATG 58.728 43.478 0.00 0.00 0.00 3.51
66 67 3.067320 GTCCTTAGCATTTTGAGGGATGC 59.933 47.826 0.29 0.29 46.88 3.91
71 72 3.323751 GCATTTTGAGGGATGCACTTT 57.676 42.857 0.00 0.00 46.03 2.66
72 73 3.667360 GCATTTTGAGGGATGCACTTTT 58.333 40.909 0.00 0.00 46.03 2.27
73 74 3.681417 GCATTTTGAGGGATGCACTTTTC 59.319 43.478 0.00 0.00 46.03 2.29
74 75 4.562143 GCATTTTGAGGGATGCACTTTTCT 60.562 41.667 0.00 0.00 46.03 2.52
75 76 4.853924 TTTTGAGGGATGCACTTTTCTC 57.146 40.909 0.00 0.00 0.00 2.87
76 77 3.507162 TTGAGGGATGCACTTTTCTCA 57.493 42.857 0.00 0.00 0.00 3.27
77 78 3.726557 TGAGGGATGCACTTTTCTCAT 57.273 42.857 0.00 0.00 0.00 2.90
78 79 4.038271 TGAGGGATGCACTTTTCTCATT 57.962 40.909 0.00 0.00 0.00 2.57
79 80 4.012374 TGAGGGATGCACTTTTCTCATTC 58.988 43.478 0.00 0.00 0.00 2.67
80 81 4.012374 GAGGGATGCACTTTTCTCATTCA 58.988 43.478 0.00 0.00 0.00 2.57
81 82 4.607239 AGGGATGCACTTTTCTCATTCAT 58.393 39.130 0.00 0.00 0.00 2.57
82 83 4.401519 AGGGATGCACTTTTCTCATTCATG 59.598 41.667 0.00 0.00 0.00 3.07
83 84 4.110482 GGATGCACTTTTCTCATTCATGC 58.890 43.478 0.00 0.00 0.00 4.06
84 85 3.581024 TGCACTTTTCTCATTCATGCC 57.419 42.857 0.00 0.00 0.00 4.40
85 86 2.892215 TGCACTTTTCTCATTCATGCCA 59.108 40.909 0.00 0.00 0.00 4.92
86 87 3.512329 TGCACTTTTCTCATTCATGCCAT 59.488 39.130 0.00 0.00 0.00 4.40
87 88 3.863424 GCACTTTTCTCATTCATGCCATG 59.137 43.478 0.00 0.00 0.00 3.66
88 89 3.863424 CACTTTTCTCATTCATGCCATGC 59.137 43.478 0.00 0.00 0.00 4.06
89 90 3.118884 ACTTTTCTCATTCATGCCATGCC 60.119 43.478 0.00 0.00 0.00 4.40
90 91 2.146920 TTCTCATTCATGCCATGCCA 57.853 45.000 0.00 0.00 0.00 4.92
91 92 2.146920 TCTCATTCATGCCATGCCAA 57.853 45.000 0.00 0.00 0.00 4.52
92 93 2.673258 TCTCATTCATGCCATGCCAAT 58.327 42.857 0.00 0.00 0.00 3.16
93 94 2.626266 TCTCATTCATGCCATGCCAATC 59.374 45.455 0.00 0.00 0.00 2.67
94 95 2.364002 CTCATTCATGCCATGCCAATCA 59.636 45.455 0.00 0.00 0.00 2.57
95 96 2.969262 TCATTCATGCCATGCCAATCAT 59.031 40.909 0.00 0.00 35.31 2.45
96 97 3.389656 TCATTCATGCCATGCCAATCATT 59.610 39.130 0.00 0.00 31.79 2.57
97 98 2.900716 TCATGCCATGCCAATCATTG 57.099 45.000 0.00 0.00 31.79 2.82
98 99 2.389715 TCATGCCATGCCAATCATTGA 58.610 42.857 0.00 0.00 31.79 2.57
99 100 2.364002 TCATGCCATGCCAATCATTGAG 59.636 45.455 0.00 0.00 31.79 3.02
100 101 0.462375 TGCCATGCCAATCATTGAGC 59.538 50.000 0.00 1.36 31.79 4.26
101 102 0.750850 GCCATGCCAATCATTGAGCT 59.249 50.000 0.00 0.00 31.79 4.09
102 103 1.138266 GCCATGCCAATCATTGAGCTT 59.862 47.619 0.00 0.00 31.79 3.74
103 104 2.419574 GCCATGCCAATCATTGAGCTTT 60.420 45.455 0.00 0.00 31.79 3.51
104 105 3.454375 CCATGCCAATCATTGAGCTTTC 58.546 45.455 0.00 0.00 31.79 2.62
105 106 3.454375 CATGCCAATCATTGAGCTTTCC 58.546 45.455 0.00 0.00 31.79 3.13
106 107 2.811410 TGCCAATCATTGAGCTTTCCT 58.189 42.857 0.00 0.00 0.00 3.36
107 108 2.494471 TGCCAATCATTGAGCTTTCCTG 59.506 45.455 0.00 0.00 0.00 3.86
108 109 2.756760 GCCAATCATTGAGCTTTCCTGA 59.243 45.455 0.00 0.00 0.00 3.86
109 110 3.181489 GCCAATCATTGAGCTTTCCTGAG 60.181 47.826 0.00 0.00 0.00 3.35
110 111 4.267536 CCAATCATTGAGCTTTCCTGAGA 58.732 43.478 0.00 0.00 0.00 3.27
111 112 4.888239 CCAATCATTGAGCTTTCCTGAGAT 59.112 41.667 0.00 0.00 0.00 2.75
112 113 6.060136 CCAATCATTGAGCTTTCCTGAGATA 58.940 40.000 0.00 0.00 0.00 1.98
113 114 6.715718 CCAATCATTGAGCTTTCCTGAGATAT 59.284 38.462 0.00 0.00 0.00 1.63
114 115 7.230913 CCAATCATTGAGCTTTCCTGAGATATT 59.769 37.037 0.00 0.00 0.00 1.28
115 116 9.281371 CAATCATTGAGCTTTCCTGAGATATTA 57.719 33.333 0.00 0.00 0.00 0.98
116 117 9.857656 AATCATTGAGCTTTCCTGAGATATTAA 57.142 29.630 0.00 0.00 0.00 1.40
118 119 9.499479 TCATTGAGCTTTCCTGAGATATTAATC 57.501 33.333 0.00 0.00 0.00 1.75
119 120 9.504708 CATTGAGCTTTCCTGAGATATTAATCT 57.495 33.333 0.00 0.00 45.46 2.40
121 122 9.553064 TTGAGCTTTCCTGAGATATTAATCTTC 57.447 33.333 0.00 0.00 42.73 2.87
122 123 8.708378 TGAGCTTTCCTGAGATATTAATCTTCA 58.292 33.333 0.00 0.00 42.73 3.02
123 124 9.553064 GAGCTTTCCTGAGATATTAATCTTCAA 57.447 33.333 0.00 0.00 42.73 2.69
124 125 9.911788 AGCTTTCCTGAGATATTAATCTTCAAA 57.088 29.630 0.00 0.00 42.73 2.69
159 160 8.893219 CTCAATGAGCTATATGTTGTTAGGAA 57.107 34.615 0.00 0.00 0.00 3.36
160 161 9.499479 CTCAATGAGCTATATGTTGTTAGGAAT 57.501 33.333 0.00 0.00 0.00 3.01
161 162 9.851686 TCAATGAGCTATATGTTGTTAGGAATT 57.148 29.630 0.00 0.00 0.00 2.17
164 165 9.726438 ATGAGCTATATGTTGTTAGGAATTACC 57.274 33.333 0.00 0.00 39.35 2.85
165 166 8.710239 TGAGCTATATGTTGTTAGGAATTACCA 58.290 33.333 0.00 0.00 42.04 3.25
166 167 9.555727 GAGCTATATGTTGTTAGGAATTACCAA 57.444 33.333 0.00 0.00 42.04 3.67
167 168 9.914834 AGCTATATGTTGTTAGGAATTACCAAA 57.085 29.630 0.00 0.00 42.04 3.28
171 172 7.604657 ATGTTGTTAGGAATTACCAAAACCA 57.395 32.000 0.00 0.00 42.04 3.67
172 173 7.604657 TGTTGTTAGGAATTACCAAAACCAT 57.395 32.000 0.00 0.00 42.04 3.55
173 174 7.662897 TGTTGTTAGGAATTACCAAAACCATC 58.337 34.615 0.00 0.00 42.04 3.51
174 175 7.507616 TGTTGTTAGGAATTACCAAAACCATCT 59.492 33.333 0.00 0.00 42.04 2.90
175 176 9.016438 GTTGTTAGGAATTACCAAAACCATCTA 57.984 33.333 0.00 0.00 42.04 1.98
176 177 8.801882 TGTTAGGAATTACCAAAACCATCTAG 57.198 34.615 0.00 0.00 42.04 2.43
177 178 7.832187 TGTTAGGAATTACCAAAACCATCTAGG 59.168 37.037 0.00 0.00 42.06 3.02
178 179 5.766590 AGGAATTACCAAAACCATCTAGGG 58.233 41.667 0.00 0.00 41.10 3.53
179 180 5.494706 AGGAATTACCAAAACCATCTAGGGA 59.505 40.000 0.00 0.00 41.10 4.20
180 181 6.162241 AGGAATTACCAAAACCATCTAGGGAT 59.838 38.462 0.00 0.00 41.10 3.85
181 182 7.352522 AGGAATTACCAAAACCATCTAGGGATA 59.647 37.037 0.00 0.00 41.10 2.59
182 183 7.665974 GGAATTACCAAAACCATCTAGGGATAG 59.334 40.741 0.00 0.00 39.31 2.08
183 184 7.707467 ATTACCAAAACCATCTAGGGATAGT 57.293 36.000 0.00 0.00 43.89 2.12
184 185 7.519347 TTACCAAAACCATCTAGGGATAGTT 57.481 36.000 0.00 0.00 43.89 2.24
185 186 5.755849 ACCAAAACCATCTAGGGATAGTTG 58.244 41.667 0.00 0.00 43.89 3.16
186 187 4.580580 CCAAAACCATCTAGGGATAGTTGC 59.419 45.833 0.00 0.00 43.89 4.17
187 188 5.192927 CAAAACCATCTAGGGATAGTTGCA 58.807 41.667 0.00 0.00 43.89 4.08
188 189 4.423625 AACCATCTAGGGATAGTTGCAC 57.576 45.455 0.00 0.00 43.89 4.57
189 190 3.658725 ACCATCTAGGGATAGTTGCACT 58.341 45.455 0.00 0.00 43.89 4.40
190 191 4.040755 ACCATCTAGGGATAGTTGCACTT 58.959 43.478 0.00 0.00 43.89 3.16
191 192 4.475016 ACCATCTAGGGATAGTTGCACTTT 59.525 41.667 0.00 0.00 43.89 2.66
192 193 5.059833 CCATCTAGGGATAGTTGCACTTTC 58.940 45.833 0.00 0.00 0.00 2.62
193 194 5.396772 CCATCTAGGGATAGTTGCACTTTCA 60.397 44.000 0.00 0.00 29.36 2.69
194 195 5.755409 TCTAGGGATAGTTGCACTTTCAA 57.245 39.130 0.00 0.00 29.36 2.69
195 196 6.313519 TCTAGGGATAGTTGCACTTTCAAT 57.686 37.500 0.00 0.00 29.36 2.57
196 197 6.721318 TCTAGGGATAGTTGCACTTTCAATT 58.279 36.000 0.00 0.00 29.36 2.32
197 198 7.175104 TCTAGGGATAGTTGCACTTTCAATTT 58.825 34.615 0.00 0.00 29.36 1.82
198 199 6.272822 AGGGATAGTTGCACTTTCAATTTC 57.727 37.500 0.00 0.00 29.36 2.17
199 200 5.185828 AGGGATAGTTGCACTTTCAATTTCC 59.814 40.000 0.00 0.00 29.36 3.13
200 201 5.410924 GGATAGTTGCACTTTCAATTTCCC 58.589 41.667 0.00 0.00 29.36 3.97
201 202 3.751479 AGTTGCACTTTCAATTTCCCC 57.249 42.857 0.00 0.00 0.00 4.81
202 203 2.368548 AGTTGCACTTTCAATTTCCCCC 59.631 45.455 0.00 0.00 0.00 5.40
203 204 2.368548 GTTGCACTTTCAATTTCCCCCT 59.631 45.455 0.00 0.00 0.00 4.79
204 205 2.688477 TGCACTTTCAATTTCCCCCTT 58.312 42.857 0.00 0.00 0.00 3.95
205 206 3.044894 TGCACTTTCAATTTCCCCCTTT 58.955 40.909 0.00 0.00 0.00 3.11
206 207 3.457749 TGCACTTTCAATTTCCCCCTTTT 59.542 39.130 0.00 0.00 0.00 2.27
207 208 4.080072 TGCACTTTCAATTTCCCCCTTTTT 60.080 37.500 0.00 0.00 0.00 1.94
208 209 4.275689 GCACTTTCAATTTCCCCCTTTTTG 59.724 41.667 0.00 0.00 0.00 2.44
209 210 4.821260 CACTTTCAATTTCCCCCTTTTTGG 59.179 41.667 0.00 0.00 0.00 3.28
210 211 4.476846 ACTTTCAATTTCCCCCTTTTTGGT 59.523 37.500 0.00 0.00 0.00 3.67
211 212 5.668080 ACTTTCAATTTCCCCCTTTTTGGTA 59.332 36.000 0.00 0.00 0.00 3.25
212 213 6.158871 ACTTTCAATTTCCCCCTTTTTGGTAA 59.841 34.615 0.00 0.00 0.00 2.85
213 214 6.771934 TTCAATTTCCCCCTTTTTGGTAAT 57.228 33.333 0.00 0.00 0.00 1.89
214 215 6.771934 TCAATTTCCCCCTTTTTGGTAATT 57.228 33.333 0.00 0.00 33.49 1.40
215 216 6.538263 TCAATTTCCCCCTTTTTGGTAATTG 58.462 36.000 11.92 11.92 44.34 2.32
216 217 6.330250 TCAATTTCCCCCTTTTTGGTAATTGA 59.670 34.615 15.09 15.09 46.82 2.57
217 218 6.968400 ATTTCCCCCTTTTTGGTAATTGAT 57.032 33.333 0.00 0.00 0.00 2.57
218 219 5.753721 TTCCCCCTTTTTGGTAATTGATG 57.246 39.130 0.00 0.00 0.00 3.07
219 220 5.017093 TCCCCCTTTTTGGTAATTGATGA 57.983 39.130 0.00 0.00 0.00 2.92
220 221 4.775253 TCCCCCTTTTTGGTAATTGATGAC 59.225 41.667 0.00 0.00 0.00 3.06
221 222 4.530161 CCCCCTTTTTGGTAATTGATGACA 59.470 41.667 0.00 0.00 0.00 3.58
222 223 5.012561 CCCCCTTTTTGGTAATTGATGACAA 59.987 40.000 0.00 0.00 40.42 3.18
223 224 5.931724 CCCCTTTTTGGTAATTGATGACAAC 59.068 40.000 0.00 0.00 38.90 3.32
224 225 6.463614 CCCCTTTTTGGTAATTGATGACAACA 60.464 38.462 0.00 0.00 38.90 3.33
225 226 7.160726 CCCTTTTTGGTAATTGATGACAACAT 58.839 34.615 0.00 0.00 38.90 2.71
226 227 8.310382 CCCTTTTTGGTAATTGATGACAACATA 58.690 33.333 0.00 0.00 38.90 2.29
227 228 9.874205 CCTTTTTGGTAATTGATGACAACATAT 57.126 29.630 0.00 0.00 38.90 1.78
238 239 8.969260 TTGATGACAACATATAGATCAAAGCT 57.031 30.769 0.00 0.00 36.82 3.74
239 240 8.969260 TGATGACAACATATAGATCAAAGCTT 57.031 30.769 0.00 0.00 36.82 3.74
240 241 9.049523 TGATGACAACATATAGATCAAAGCTTC 57.950 33.333 0.00 0.00 36.82 3.86
241 242 7.468922 TGACAACATATAGATCAAAGCTTCG 57.531 36.000 0.00 0.00 0.00 3.79
242 243 7.264947 TGACAACATATAGATCAAAGCTTCGA 58.735 34.615 0.00 0.00 0.00 3.71
243 244 7.222805 TGACAACATATAGATCAAAGCTTCGAC 59.777 37.037 0.00 0.00 0.00 4.20
244 245 7.041721 ACAACATATAGATCAAAGCTTCGACA 58.958 34.615 0.00 0.00 0.00 4.35
245 246 7.549134 ACAACATATAGATCAAAGCTTCGACAA 59.451 33.333 0.00 0.00 0.00 3.18
246 247 8.390354 CAACATATAGATCAAAGCTTCGACAAA 58.610 33.333 0.00 0.00 0.00 2.83
247 248 8.668510 ACATATAGATCAAAGCTTCGACAAAT 57.331 30.769 0.00 0.00 0.00 2.32
248 249 8.554528 ACATATAGATCAAAGCTTCGACAAATG 58.445 33.333 0.00 0.63 0.00 2.32
249 250 8.768019 CATATAGATCAAAGCTTCGACAAATGA 58.232 33.333 0.00 0.00 0.00 2.57
250 251 7.798596 ATAGATCAAAGCTTCGACAAATGAT 57.201 32.000 0.00 3.05 0.00 2.45
251 252 8.893219 ATAGATCAAAGCTTCGACAAATGATA 57.107 30.769 0.00 0.00 0.00 2.15
252 253 7.615582 AGATCAAAGCTTCGACAAATGATAA 57.384 32.000 0.00 0.00 0.00 1.75
253 254 8.218338 AGATCAAAGCTTCGACAAATGATAAT 57.782 30.769 0.00 0.00 0.00 1.28
254 255 9.330063 AGATCAAAGCTTCGACAAATGATAATA 57.670 29.630 0.00 0.00 0.00 0.98
255 256 9.935682 GATCAAAGCTTCGACAAATGATAATAA 57.064 29.630 0.00 0.00 0.00 1.40
256 257 9.941664 ATCAAAGCTTCGACAAATGATAATAAG 57.058 29.630 0.00 0.00 0.00 1.73
257 258 9.161629 TCAAAGCTTCGACAAATGATAATAAGA 57.838 29.630 0.00 0.00 0.00 2.10
258 259 9.430838 CAAAGCTTCGACAAATGATAATAAGAG 57.569 33.333 0.00 0.00 0.00 2.85
259 260 8.723942 AAGCTTCGACAAATGATAATAAGAGT 57.276 30.769 0.00 0.00 0.00 3.24
260 261 8.136057 AGCTTCGACAAATGATAATAAGAGTG 57.864 34.615 0.00 0.00 0.00 3.51
261 262 7.981789 AGCTTCGACAAATGATAATAAGAGTGA 59.018 33.333 0.00 0.00 0.00 3.41
262 263 8.604035 GCTTCGACAAATGATAATAAGAGTGAA 58.396 33.333 0.00 0.00 0.00 3.18
304 305 4.909696 TCGAAAGAAATGTTGGCTGAAA 57.090 36.364 0.00 0.00 37.03 2.69
305 306 4.858935 TCGAAAGAAATGTTGGCTGAAAG 58.141 39.130 0.00 0.00 37.03 2.62
306 307 4.338118 TCGAAAGAAATGTTGGCTGAAAGT 59.662 37.500 0.00 0.00 37.03 2.66
307 308 5.043248 CGAAAGAAATGTTGGCTGAAAGTT 58.957 37.500 0.00 0.00 35.30 2.66
308 309 5.051508 CGAAAGAAATGTTGGCTGAAAGTTG 60.052 40.000 0.00 0.00 35.30 3.16
309 310 5.596836 AAGAAATGTTGGCTGAAAGTTGA 57.403 34.783 0.00 0.00 35.30 3.18
310 311 5.796424 AGAAATGTTGGCTGAAAGTTGAT 57.204 34.783 0.00 0.00 35.30 2.57
311 312 5.535333 AGAAATGTTGGCTGAAAGTTGATG 58.465 37.500 0.00 0.00 35.30 3.07
312 313 5.302568 AGAAATGTTGGCTGAAAGTTGATGA 59.697 36.000 0.00 0.00 35.30 2.92
313 314 3.988379 TGTTGGCTGAAAGTTGATGAC 57.012 42.857 0.00 0.00 35.30 3.06
314 315 3.286353 TGTTGGCTGAAAGTTGATGACA 58.714 40.909 0.00 0.00 35.30 3.58
315 316 3.890756 TGTTGGCTGAAAGTTGATGACAT 59.109 39.130 0.00 0.00 35.30 3.06
316 317 4.232221 GTTGGCTGAAAGTTGATGACATG 58.768 43.478 0.00 0.00 35.30 3.21
317 318 2.229543 TGGCTGAAAGTTGATGACATGC 59.770 45.455 0.00 0.00 35.30 4.06
318 319 2.490903 GGCTGAAAGTTGATGACATGCT 59.509 45.455 0.00 0.00 35.30 3.79
319 320 3.057033 GGCTGAAAGTTGATGACATGCTT 60.057 43.478 0.00 0.00 35.30 3.91
320 321 4.553323 GCTGAAAGTTGATGACATGCTTT 58.447 39.130 0.00 1.00 35.76 3.51
321 322 4.986659 GCTGAAAGTTGATGACATGCTTTT 59.013 37.500 0.00 0.00 34.42 2.27
322 323 6.151691 GCTGAAAGTTGATGACATGCTTTTA 58.848 36.000 0.00 0.00 34.42 1.52
323 324 6.307318 GCTGAAAGTTGATGACATGCTTTTAG 59.693 38.462 16.05 16.05 37.63 1.85
324 325 6.680810 TGAAAGTTGATGACATGCTTTTAGG 58.319 36.000 0.00 0.00 34.42 2.69
325 326 4.708726 AGTTGATGACATGCTTTTAGGC 57.291 40.909 0.00 0.00 0.00 3.93
326 327 4.338879 AGTTGATGACATGCTTTTAGGCT 58.661 39.130 0.00 0.00 0.00 4.58
327 328 4.768968 AGTTGATGACATGCTTTTAGGCTT 59.231 37.500 0.00 0.00 0.00 4.35
328 329 4.707030 TGATGACATGCTTTTAGGCTTG 57.293 40.909 0.00 0.00 41.27 4.01
329 330 3.119388 TGATGACATGCTTTTAGGCTTGC 60.119 43.478 0.00 0.00 39.82 4.01
330 331 2.517959 TGACATGCTTTTAGGCTTGCT 58.482 42.857 0.00 0.00 39.82 3.91
331 332 2.892852 TGACATGCTTTTAGGCTTGCTT 59.107 40.909 0.00 0.00 39.82 3.91
332 333 4.078537 TGACATGCTTTTAGGCTTGCTTA 58.921 39.130 0.00 0.00 39.82 3.09
333 334 4.082787 TGACATGCTTTTAGGCTTGCTTAC 60.083 41.667 0.00 0.00 39.82 2.34
334 335 3.826157 ACATGCTTTTAGGCTTGCTTACA 59.174 39.130 0.00 0.00 39.82 2.41
335 336 4.463891 ACATGCTTTTAGGCTTGCTTACAT 59.536 37.500 0.00 0.00 39.82 2.29
336 337 5.047092 ACATGCTTTTAGGCTTGCTTACATT 60.047 36.000 0.00 0.00 39.82 2.71
337 338 4.808558 TGCTTTTAGGCTTGCTTACATTG 58.191 39.130 0.00 0.00 0.00 2.82
338 339 4.522405 TGCTTTTAGGCTTGCTTACATTGA 59.478 37.500 0.00 0.00 0.00 2.57
339 340 5.185635 TGCTTTTAGGCTTGCTTACATTGAT 59.814 36.000 0.00 0.00 0.00 2.57
340 341 5.517770 GCTTTTAGGCTTGCTTACATTGATG 59.482 40.000 0.00 0.00 0.00 3.07
341 342 6.625740 GCTTTTAGGCTTGCTTACATTGATGA 60.626 38.462 0.00 0.00 0.00 2.92
342 343 5.818136 TTAGGCTTGCTTACATTGATGAC 57.182 39.130 0.00 0.00 0.00 3.06
343 344 3.689347 AGGCTTGCTTACATTGATGACA 58.311 40.909 0.00 0.00 0.00 3.58
344 345 4.275810 AGGCTTGCTTACATTGATGACAT 58.724 39.130 0.00 0.00 0.00 3.06
345 346 4.097437 AGGCTTGCTTACATTGATGACATG 59.903 41.667 0.00 0.00 0.00 3.21
346 347 4.142315 GGCTTGCTTACATTGATGACATGT 60.142 41.667 0.00 0.00 0.00 3.21
347 348 4.796830 GCTTGCTTACATTGATGACATGTG 59.203 41.667 1.15 0.00 0.00 3.21
348 349 5.620654 GCTTGCTTACATTGATGACATGTGT 60.621 40.000 1.15 0.00 32.72 3.72
349 350 6.403527 GCTTGCTTACATTGATGACATGTGTA 60.404 38.462 1.15 0.00 31.31 2.90
350 351 7.446001 TTGCTTACATTGATGACATGTGTAA 57.554 32.000 1.15 2.83 36.30 2.41
351 352 7.628769 TGCTTACATTGATGACATGTGTAAT 57.371 32.000 1.15 0.00 37.12 1.89
352 353 8.729805 TGCTTACATTGATGACATGTGTAATA 57.270 30.769 1.15 0.00 37.12 0.98
353 354 8.829612 TGCTTACATTGATGACATGTGTAATAG 58.170 33.333 1.15 0.00 37.12 1.73
354 355 8.830580 GCTTACATTGATGACATGTGTAATAGT 58.169 33.333 1.15 0.00 37.12 2.12
357 358 7.475015 ACATTGATGACATGTGTAATAGTTGC 58.525 34.615 1.15 0.00 0.00 4.17
358 359 7.337689 ACATTGATGACATGTGTAATAGTTGCT 59.662 33.333 1.15 0.00 0.00 3.91
359 360 7.686438 TTGATGACATGTGTAATAGTTGCTT 57.314 32.000 1.15 0.00 0.00 3.91
360 361 7.686438 TGATGACATGTGTAATAGTTGCTTT 57.314 32.000 1.15 0.00 0.00 3.51
361 362 7.529158 TGATGACATGTGTAATAGTTGCTTTG 58.471 34.615 1.15 0.00 0.00 2.77
362 363 7.390162 TGATGACATGTGTAATAGTTGCTTTGA 59.610 33.333 1.15 0.00 0.00 2.69
363 364 7.132694 TGACATGTGTAATAGTTGCTTTGAG 57.867 36.000 1.15 0.00 0.00 3.02
364 365 5.942872 ACATGTGTAATAGTTGCTTTGAGC 58.057 37.500 0.00 0.00 42.82 4.26
365 366 5.707298 ACATGTGTAATAGTTGCTTTGAGCT 59.293 36.000 0.00 0.00 42.97 4.09
366 367 6.878923 ACATGTGTAATAGTTGCTTTGAGCTA 59.121 34.615 0.00 0.00 42.97 3.32
367 368 6.968131 TGTGTAATAGTTGCTTTGAGCTAG 57.032 37.500 1.29 0.00 42.97 3.42
368 369 5.874810 TGTGTAATAGTTGCTTTGAGCTAGG 59.125 40.000 1.29 0.00 42.97 3.02
369 370 5.294552 GTGTAATAGTTGCTTTGAGCTAGGG 59.705 44.000 1.29 0.00 42.97 3.53
370 371 4.844349 AATAGTTGCTTTGAGCTAGGGA 57.156 40.909 1.29 0.00 42.97 4.20
371 372 5.379706 AATAGTTGCTTTGAGCTAGGGAT 57.620 39.130 1.29 0.00 42.97 3.85
372 373 6.500589 AATAGTTGCTTTGAGCTAGGGATA 57.499 37.500 1.29 0.00 42.97 2.59
373 374 4.414337 AGTTGCTTTGAGCTAGGGATAG 57.586 45.455 1.29 0.00 42.97 2.08
374 375 3.777522 AGTTGCTTTGAGCTAGGGATAGT 59.222 43.478 1.29 0.00 42.97 2.12
375 376 4.226168 AGTTGCTTTGAGCTAGGGATAGTT 59.774 41.667 1.29 0.00 42.97 2.24
376 377 4.142609 TGCTTTGAGCTAGGGATAGTTG 57.857 45.455 1.29 0.00 42.97 3.16
377 378 2.875317 GCTTTGAGCTAGGGATAGTTGC 59.125 50.000 0.00 0.00 38.45 4.17
412 414 9.675464 TGGATTTTAAGTCCAATAGATTAACGT 57.325 29.630 6.73 0.00 42.56 3.99
417 419 9.491675 TTTAAGTCCAATAGATTAACGTTGACA 57.508 29.630 11.99 0.00 0.00 3.58
418 420 7.972832 AAGTCCAATAGATTAACGTTGACAA 57.027 32.000 11.99 0.00 0.00 3.18
419 421 7.972832 AGTCCAATAGATTAACGTTGACAAA 57.027 32.000 11.99 0.00 0.00 2.83
420 422 8.385898 AGTCCAATAGATTAACGTTGACAAAA 57.614 30.769 11.99 0.00 0.00 2.44
421 423 9.010029 AGTCCAATAGATTAACGTTGACAAAAT 57.990 29.630 11.99 1.54 0.00 1.82
422 424 9.620660 GTCCAATAGATTAACGTTGACAAAATT 57.379 29.630 11.99 1.23 0.00 1.82
454 456 6.071616 TGTTAGGGCAACAAGATCCAAATAAC 60.072 38.462 0.00 0.00 44.20 1.89
505 507 5.177511 GCTTTTCAGCACTCCCAAATTTTAC 59.822 40.000 0.00 0.00 46.49 2.01
516 518 5.572252 TCCCAAATTTTACCTCGGTTACAT 58.428 37.500 0.00 0.00 0.00 2.29
517 519 6.719301 TCCCAAATTTTACCTCGGTTACATA 58.281 36.000 0.00 0.00 0.00 2.29
518 520 6.824704 TCCCAAATTTTACCTCGGTTACATAG 59.175 38.462 0.00 0.00 0.00 2.23
519 521 6.459161 CCCAAATTTTACCTCGGTTACATAGC 60.459 42.308 0.00 0.00 0.00 2.97
546 548 6.149474 AGTGATAGTCAGGCACAAAAATACAC 59.851 38.462 0.00 0.00 35.08 2.90
550 552 4.036734 AGTCAGGCACAAAAATACACAGTG 59.963 41.667 0.00 0.00 0.00 3.66
551 553 3.951037 TCAGGCACAAAAATACACAGTGT 59.049 39.130 11.87 11.87 32.99 3.55
556 558 7.750458 CAGGCACAAAAATACACAGTGTTATAG 59.250 37.037 12.53 0.55 32.99 1.31
585 587 7.535489 ACCTCTTTAAAAATAATCTCGTCCG 57.465 36.000 0.00 0.00 0.00 4.79
591 593 5.986004 AAAAATAATCTCGTCCGGACATC 57.014 39.130 32.80 8.02 0.00 3.06
598 600 2.416260 GTCCGGACATCCCTACGC 59.584 66.667 29.75 0.00 0.00 4.42
611 613 4.451629 TCCCTACGCTGAGTTTAAAGAG 57.548 45.455 0.00 0.00 0.00 2.85
620 622 4.456222 GCTGAGTTTAAAGAGAAGGGGAAC 59.544 45.833 0.00 0.00 0.00 3.62
656 658 3.134879 TCGTGTTTCGAGGTGGCT 58.865 55.556 0.00 0.00 44.01 4.75
657 659 2.343506 TCGTGTTTCGAGGTGGCTA 58.656 52.632 0.00 0.00 44.01 3.93
662 664 3.058501 CGTGTTTCGAGGTGGCTATTTTT 60.059 43.478 0.00 0.00 42.86 1.94
672 674 2.364002 GTGGCTATTTTTGTGGTGTGGT 59.636 45.455 0.00 0.00 0.00 4.16
681 683 0.751277 TGTGGTGTGGTTTGCTCCAG 60.751 55.000 0.00 0.00 38.23 3.86
696 698 3.019564 GCTCCAGTGAACCTTAATGCAT 58.980 45.455 0.00 0.00 0.00 3.96
705 707 7.762615 CAGTGAACCTTAATGCATTTGATGATT 59.237 33.333 18.75 5.25 0.00 2.57
712 714 5.587388 AATGCATTTGATGATTTCGGTCT 57.413 34.783 5.99 0.00 0.00 3.85
715 717 6.507958 TGCATTTGATGATTTCGGTCTTAA 57.492 33.333 0.00 0.00 0.00 1.85
721 723 5.879237 TGATGATTTCGGTCTTAATGCAAC 58.121 37.500 0.00 0.00 0.00 4.17
727 729 4.177165 TCGGTCTTAATGCAACGTTCTA 57.823 40.909 0.00 0.00 0.00 2.10
744 746 4.374707 CGTTCTACTTCGTTCAAAACCGAG 60.375 45.833 0.00 0.00 34.16 4.63
754 756 2.938838 TCAAAACCGAGGTTTCATGGT 58.061 42.857 19.22 2.23 46.22 3.55
766 768 6.484643 CGAGGTTTCATGGTAATTCAGATCAT 59.515 38.462 0.00 0.00 0.00 2.45
767 769 7.519488 CGAGGTTTCATGGTAATTCAGATCATG 60.519 40.741 0.00 0.00 37.23 3.07
768 770 6.040166 AGGTTTCATGGTAATTCAGATCATGC 59.960 38.462 0.00 0.00 36.22 4.06
769 771 6.040166 GGTTTCATGGTAATTCAGATCATGCT 59.960 38.462 0.00 0.00 36.22 3.79
771 773 5.932455 TCATGGTAATTCAGATCATGCTGA 58.068 37.500 0.00 0.00 42.81 4.26
796 801 4.082665 TCGATAGAGTAGGAATGGACGT 57.917 45.455 0.00 0.00 42.67 4.34
797 802 3.813724 TCGATAGAGTAGGAATGGACGTG 59.186 47.826 0.00 0.00 42.67 4.49
798 803 3.609644 CGATAGAGTAGGAATGGACGTGC 60.610 52.174 0.00 0.00 39.76 5.34
799 804 1.853963 AGAGTAGGAATGGACGTGCT 58.146 50.000 8.99 0.00 0.00 4.40
800 805 2.180276 AGAGTAGGAATGGACGTGCTT 58.820 47.619 8.99 0.00 0.00 3.91
801 806 2.093973 AGAGTAGGAATGGACGTGCTTG 60.094 50.000 8.99 0.00 0.00 4.01
833 838 0.179020 TGGGCTTGTGTGAGAGTTGG 60.179 55.000 0.00 0.00 0.00 3.77
850 855 0.313672 TGGAGGAATTTGCGCAACAC 59.686 50.000 24.99 16.24 0.00 3.32
909 914 3.680475 GCAACCATCCTAACCGTACATGA 60.680 47.826 0.00 0.00 0.00 3.07
928 933 0.674534 ATGTAATCGGACGGCTCCTC 59.325 55.000 0.00 0.00 33.79 3.71
934 939 1.259609 TCGGACGGCTCCTCTAAAAA 58.740 50.000 0.00 0.00 33.79 1.94
973 981 1.039856 GCAAAGCAAAACCTCTCCCA 58.960 50.000 0.00 0.00 0.00 4.37
988 996 0.970937 TCCCATCCTCGTCAGACACC 60.971 60.000 0.41 0.00 0.00 4.16
1080 1106 2.202878 GCCGCCGCAGTAATCTCA 60.203 61.111 0.00 0.00 34.03 3.27
1290 1316 3.151022 CGCCTCCTCCTCCTCCAC 61.151 72.222 0.00 0.00 0.00 4.02
1299 1325 2.492090 CTCCTCCACTCGCCTTCG 59.508 66.667 0.00 0.00 0.00 3.79
1302 1328 2.344203 CCTCCACTCGCCTTCGTCT 61.344 63.158 0.00 0.00 36.96 4.18
1491 1517 4.400961 GCGCTCTGCAAGGAGGGT 62.401 66.667 17.65 0.00 44.63 4.34
1767 1793 1.182385 AGGGGATCGAGGCGAATCTC 61.182 60.000 0.00 0.00 39.99 2.75
2080 2106 1.078072 AATGGTTATGCGCCGGACA 60.078 52.632 5.05 1.76 0.00 4.02
2172 2198 7.872138 TGATAAAGGAGATGAAGGTTAATGGT 58.128 34.615 0.00 0.00 0.00 3.55
2179 2205 6.127619 GGAGATGAAGGTTAATGGTTTTGAGG 60.128 42.308 0.00 0.00 0.00 3.86
2226 2252 3.505680 TGATACATTTGCTTTGCCGAAGT 59.494 39.130 0.00 0.00 37.69 3.01
2430 2456 2.224314 CAGAGAAAAGGAAGGCGACAAC 59.776 50.000 0.00 0.00 0.00 3.32
2568 2594 2.490115 CCAGGTCGCAGATAGGATAGTC 59.510 54.545 0.00 0.00 40.67 2.59
2717 2743 9.237187 TCACCTAAGCAATTTATATTTCACACA 57.763 29.630 0.00 0.00 0.00 3.72
2752 2778 3.149196 TGGGATGTTCAAGAAGCAAGAC 58.851 45.455 0.00 0.00 0.00 3.01
2948 2974 1.766494 CCATTGCCATGGCTTCTACA 58.234 50.000 35.53 13.42 43.95 2.74
2961 2987 3.620374 GGCTTCTACATGATGTCAGTGTG 59.380 47.826 0.00 0.00 0.00 3.82
2965 2991 4.820897 TCTACATGATGTCAGTGTGGAAC 58.179 43.478 0.00 0.00 31.67 3.62
3013 3040 5.460419 GCTAATCGAGTCTTAGATGTTGTGG 59.540 44.000 8.18 0.00 0.00 4.17
3048 3075 9.481340 GCATATGTGATGTACTTCTGATTCTTA 57.519 33.333 4.29 1.02 0.00 2.10
3127 3154 6.476706 GGCCTCTTTGATTTAATGGATTTTCG 59.523 38.462 0.00 0.00 0.00 3.46
3229 3257 6.381498 TGGTAATTTTGGATGAGGTAGTGA 57.619 37.500 0.00 0.00 0.00 3.41
3314 3342 4.766891 GGGAATTTCAGGATTGTGTTGAGA 59.233 41.667 0.00 0.00 0.00 3.27
3344 3372 5.844516 TCCCCTAAGGATTCCATTGTACTAG 59.155 44.000 5.29 0.00 40.93 2.57
3346 3374 6.502158 CCCCTAAGGATTCCATTGTACTAGAT 59.498 42.308 5.29 0.00 38.24 1.98
3396 3424 6.927381 CAGTTGAATCAAGCCTCTTGAAAATT 59.073 34.615 12.53 3.98 31.55 1.82
3400 3428 8.991243 TGAATCAAGCCTCTTGAAAATTATTG 57.009 30.769 12.53 0.00 31.55 1.90
3465 3493 7.113544 GCAAATTAAATCTTATAGGCTTCACGC 59.886 37.037 0.00 0.00 38.13 5.34
3552 3580 2.780010 AGGCCCTAAATGCTGTAGTGAT 59.220 45.455 0.00 0.00 0.00 3.06
3565 3593 5.059833 GCTGTAGTGATATCCCTCCAAAAG 58.940 45.833 0.00 0.00 0.00 2.27
3566 3594 5.163301 GCTGTAGTGATATCCCTCCAAAAGA 60.163 44.000 0.00 0.00 0.00 2.52
3597 3625 3.018856 CCCTACCTGTACACGTGATGTA 58.981 50.000 25.01 13.50 43.19 2.29
3623 3651 1.502527 ATAGGGGCGGTTTTGGGTGA 61.503 55.000 0.00 0.00 0.00 4.02
3628 3656 0.038618 GGCGGTTTTGGGTGAATCAC 60.039 55.000 4.51 4.51 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.220030 TCAAAGCTCAAGACTCTACATTTTCT 58.780 34.615 0.00 0.00 0.00 2.52
1 2 7.426929 TCAAAGCTCAAGACTCTACATTTTC 57.573 36.000 0.00 0.00 0.00 2.29
2 3 6.072783 GCTCAAAGCTCAAGACTCTACATTTT 60.073 38.462 0.00 0.00 38.45 1.82
3 4 5.411053 GCTCAAAGCTCAAGACTCTACATTT 59.589 40.000 0.00 0.00 38.45 2.32
4 5 4.934602 GCTCAAAGCTCAAGACTCTACATT 59.065 41.667 0.00 0.00 38.45 2.71
5 6 4.502962 GCTCAAAGCTCAAGACTCTACAT 58.497 43.478 0.00 0.00 38.45 2.29
6 7 3.919216 GCTCAAAGCTCAAGACTCTACA 58.081 45.455 0.00 0.00 38.45 2.74
19 20 1.135170 GGATTGGCTCAAGCTCAAAGC 60.135 52.381 1.46 6.43 42.84 3.51
20 21 2.444421 AGGATTGGCTCAAGCTCAAAG 58.556 47.619 1.46 0.00 41.70 2.77
21 22 2.592102 AGGATTGGCTCAAGCTCAAA 57.408 45.000 1.46 0.00 41.70 2.69
22 23 2.592102 AAGGATTGGCTCAAGCTCAA 57.408 45.000 1.46 5.34 41.70 3.02
23 24 2.559668 CAAAAGGATTGGCTCAAGCTCA 59.440 45.455 1.46 0.00 41.70 4.26
24 25 2.560105 ACAAAAGGATTGGCTCAAGCTC 59.440 45.455 1.46 0.00 41.70 4.09
25 26 2.560105 GACAAAAGGATTGGCTCAAGCT 59.440 45.455 1.46 0.00 41.70 3.74
26 27 2.353109 GGACAAAAGGATTGGCTCAAGC 60.353 50.000 0.00 0.00 41.14 4.01
27 28 3.160269 AGGACAAAAGGATTGGCTCAAG 58.840 45.455 0.00 0.00 0.00 3.02
28 29 3.243359 AGGACAAAAGGATTGGCTCAA 57.757 42.857 0.00 0.00 0.00 3.02
29 30 2.978156 AGGACAAAAGGATTGGCTCA 57.022 45.000 0.00 0.00 0.00 4.26
30 31 3.129462 GCTAAGGACAAAAGGATTGGCTC 59.871 47.826 0.00 0.00 0.00 4.70
31 32 3.092301 GCTAAGGACAAAAGGATTGGCT 58.908 45.455 0.00 0.00 0.00 4.75
32 33 2.825532 TGCTAAGGACAAAAGGATTGGC 59.174 45.455 0.00 0.00 0.00 4.52
33 34 5.665916 AATGCTAAGGACAAAAGGATTGG 57.334 39.130 0.00 0.00 31.14 3.16
34 35 7.153985 TCAAAATGCTAAGGACAAAAGGATTG 58.846 34.615 0.00 0.00 32.47 2.67
35 36 7.301868 TCAAAATGCTAAGGACAAAAGGATT 57.698 32.000 0.00 0.00 33.35 3.01
36 37 6.071165 CCTCAAAATGCTAAGGACAAAAGGAT 60.071 38.462 0.00 0.00 0.00 3.24
37 38 5.243730 CCTCAAAATGCTAAGGACAAAAGGA 59.756 40.000 0.00 0.00 0.00 3.36
38 39 5.473039 CCTCAAAATGCTAAGGACAAAAGG 58.527 41.667 0.00 0.00 0.00 3.11
39 40 5.243730 TCCCTCAAAATGCTAAGGACAAAAG 59.756 40.000 0.00 0.00 0.00 2.27
40 41 5.144100 TCCCTCAAAATGCTAAGGACAAAA 58.856 37.500 0.00 0.00 0.00 2.44
41 42 4.735369 TCCCTCAAAATGCTAAGGACAAA 58.265 39.130 0.00 0.00 0.00 2.83
42 43 4.380843 TCCCTCAAAATGCTAAGGACAA 57.619 40.909 0.00 0.00 0.00 3.18
43 44 4.272489 CATCCCTCAAAATGCTAAGGACA 58.728 43.478 0.00 0.00 0.00 4.02
44 45 3.067320 GCATCCCTCAAAATGCTAAGGAC 59.933 47.826 0.28 0.00 43.87 3.85
45 46 3.290710 GCATCCCTCAAAATGCTAAGGA 58.709 45.455 0.28 0.00 43.87 3.36
46 47 3.025978 TGCATCCCTCAAAATGCTAAGG 58.974 45.455 8.59 0.00 46.64 2.69
47 48 3.698040 AGTGCATCCCTCAAAATGCTAAG 59.302 43.478 8.59 0.00 46.64 2.18
48 49 3.700538 AGTGCATCCCTCAAAATGCTAA 58.299 40.909 8.59 0.00 46.64 3.09
49 50 3.370840 AGTGCATCCCTCAAAATGCTA 57.629 42.857 8.59 0.00 46.64 3.49
50 51 2.226962 AGTGCATCCCTCAAAATGCT 57.773 45.000 8.59 0.00 46.64 3.79
51 52 3.323751 AAAGTGCATCCCTCAAAATGC 57.676 42.857 0.00 0.51 46.68 3.56
52 53 5.143376 AGAAAAGTGCATCCCTCAAAATG 57.857 39.130 0.00 0.00 0.00 2.32
53 54 4.834496 TGAGAAAAGTGCATCCCTCAAAAT 59.166 37.500 0.00 0.00 0.00 1.82
54 55 4.214310 TGAGAAAAGTGCATCCCTCAAAA 58.786 39.130 0.00 0.00 0.00 2.44
55 56 3.831323 TGAGAAAAGTGCATCCCTCAAA 58.169 40.909 0.00 0.00 0.00 2.69
56 57 3.507162 TGAGAAAAGTGCATCCCTCAA 57.493 42.857 0.00 0.00 0.00 3.02
57 58 3.726557 ATGAGAAAAGTGCATCCCTCA 57.273 42.857 0.00 0.00 35.48 3.86
58 59 4.012374 TGAATGAGAAAAGTGCATCCCTC 58.988 43.478 0.00 0.00 0.00 4.30
59 60 4.038271 TGAATGAGAAAAGTGCATCCCT 57.962 40.909 0.00 0.00 0.00 4.20
60 61 4.679662 CATGAATGAGAAAAGTGCATCCC 58.320 43.478 0.00 0.00 0.00 3.85
61 62 4.110482 GCATGAATGAGAAAAGTGCATCC 58.890 43.478 0.00 0.00 0.00 3.51
62 63 4.110482 GGCATGAATGAGAAAAGTGCATC 58.890 43.478 0.00 0.00 33.05 3.91
63 64 3.512329 TGGCATGAATGAGAAAAGTGCAT 59.488 39.130 0.00 0.00 33.05 3.96
64 65 2.892215 TGGCATGAATGAGAAAAGTGCA 59.108 40.909 0.00 0.00 33.05 4.57
65 66 3.581024 TGGCATGAATGAGAAAAGTGC 57.419 42.857 0.00 0.00 0.00 4.40
66 67 3.863424 GCATGGCATGAATGAGAAAAGTG 59.137 43.478 30.69 0.79 0.00 3.16
67 68 3.118884 GGCATGGCATGAATGAGAAAAGT 60.119 43.478 30.69 0.00 0.00 2.66
68 69 3.118920 TGGCATGGCATGAATGAGAAAAG 60.119 43.478 30.69 0.00 0.00 2.27
69 70 2.832733 TGGCATGGCATGAATGAGAAAA 59.167 40.909 30.69 1.99 0.00 2.29
70 71 2.458620 TGGCATGGCATGAATGAGAAA 58.541 42.857 30.69 3.52 0.00 2.52
71 72 2.146920 TGGCATGGCATGAATGAGAA 57.853 45.000 30.69 4.55 0.00 2.87
72 73 2.146920 TTGGCATGGCATGAATGAGA 57.853 45.000 30.69 1.89 0.00 3.27
73 74 2.364002 TGATTGGCATGGCATGAATGAG 59.636 45.455 30.69 3.61 0.00 2.90
74 75 2.389715 TGATTGGCATGGCATGAATGA 58.610 42.857 30.69 13.57 0.00 2.57
75 76 2.900716 TGATTGGCATGGCATGAATG 57.099 45.000 30.69 6.55 0.00 2.67
76 77 3.389656 TCAATGATTGGCATGGCATGAAT 59.610 39.130 30.69 20.87 37.28 2.57
77 78 2.766828 TCAATGATTGGCATGGCATGAA 59.233 40.909 30.69 17.05 37.28 2.57
78 79 2.364002 CTCAATGATTGGCATGGCATGA 59.636 45.455 30.69 20.53 37.28 3.07
79 80 2.754472 CTCAATGATTGGCATGGCATG 58.246 47.619 23.96 22.99 37.28 4.06
80 81 1.070134 GCTCAATGATTGGCATGGCAT 59.930 47.619 23.96 12.99 37.28 4.40
81 82 0.462375 GCTCAATGATTGGCATGGCA 59.538 50.000 19.43 19.43 37.28 4.92
82 83 0.750850 AGCTCAATGATTGGCATGGC 59.249 50.000 13.29 13.29 37.28 4.40
83 84 3.454375 GAAAGCTCAATGATTGGCATGG 58.546 45.455 16.88 1.79 37.28 3.66
84 85 3.132289 AGGAAAGCTCAATGATTGGCATG 59.868 43.478 16.88 0.00 37.28 4.06
85 86 3.132289 CAGGAAAGCTCAATGATTGGCAT 59.868 43.478 16.88 6.13 39.43 4.40
86 87 2.494471 CAGGAAAGCTCAATGATTGGCA 59.506 45.455 16.88 0.00 31.84 4.92
87 88 2.756760 TCAGGAAAGCTCAATGATTGGC 59.243 45.455 5.20 7.80 0.00 4.52
88 89 4.267536 TCTCAGGAAAGCTCAATGATTGG 58.732 43.478 5.20 0.00 0.00 3.16
89 90 7.747155 ATATCTCAGGAAAGCTCAATGATTG 57.253 36.000 0.00 0.00 0.00 2.67
90 91 9.857656 TTAATATCTCAGGAAAGCTCAATGATT 57.142 29.630 0.00 0.00 0.00 2.57
92 93 9.499479 GATTAATATCTCAGGAAAGCTCAATGA 57.501 33.333 0.00 0.00 0.00 2.57
93 94 9.504708 AGATTAATATCTCAGGAAAGCTCAATG 57.495 33.333 0.00 0.00 36.34 2.82
95 96 9.553064 GAAGATTAATATCTCAGGAAAGCTCAA 57.447 33.333 0.00 0.00 40.26 3.02
96 97 8.708378 TGAAGATTAATATCTCAGGAAAGCTCA 58.292 33.333 0.00 0.00 40.26 4.26
97 98 9.553064 TTGAAGATTAATATCTCAGGAAAGCTC 57.447 33.333 0.00 0.00 40.26 4.09
98 99 9.911788 TTTGAAGATTAATATCTCAGGAAAGCT 57.088 29.630 0.00 0.00 40.26 3.74
134 135 8.893219 TTCCTAACAACATATAGCTCATTGAG 57.107 34.615 9.40 9.40 0.00 3.02
135 136 9.851686 AATTCCTAACAACATATAGCTCATTGA 57.148 29.630 0.00 0.00 0.00 2.57
138 139 9.726438 GGTAATTCCTAACAACATATAGCTCAT 57.274 33.333 0.00 0.00 0.00 2.90
139 140 8.710239 TGGTAATTCCTAACAACATATAGCTCA 58.290 33.333 0.00 0.00 37.07 4.26
140 141 9.555727 TTGGTAATTCCTAACAACATATAGCTC 57.444 33.333 0.00 0.00 31.99 4.09
141 142 9.914834 TTTGGTAATTCCTAACAACATATAGCT 57.085 29.630 0.00 0.00 36.92 3.32
145 146 9.315363 TGGTTTTGGTAATTCCTAACAACATAT 57.685 29.630 0.00 0.00 36.92 1.78
146 147 8.707796 TGGTTTTGGTAATTCCTAACAACATA 57.292 30.769 0.00 0.00 36.92 2.29
147 148 7.604657 TGGTTTTGGTAATTCCTAACAACAT 57.395 32.000 0.00 0.00 36.92 2.71
148 149 7.507616 AGATGGTTTTGGTAATTCCTAACAACA 59.492 33.333 0.00 0.00 36.92 3.33
149 150 7.892609 AGATGGTTTTGGTAATTCCTAACAAC 58.107 34.615 0.00 0.00 36.92 3.32
150 151 9.238368 CTAGATGGTTTTGGTAATTCCTAACAA 57.762 33.333 0.00 0.00 35.31 2.83
151 152 7.832187 CCTAGATGGTTTTGGTAATTCCTAACA 59.168 37.037 0.00 0.00 35.06 2.41
152 153 7.284716 CCCTAGATGGTTTTGGTAATTCCTAAC 59.715 40.741 0.00 0.00 37.07 2.34
153 154 7.184936 TCCCTAGATGGTTTTGGTAATTCCTAA 59.815 37.037 0.00 0.00 37.07 2.69
154 155 6.679303 TCCCTAGATGGTTTTGGTAATTCCTA 59.321 38.462 0.00 0.00 37.07 2.94
155 156 5.494706 TCCCTAGATGGTTTTGGTAATTCCT 59.505 40.000 0.00 0.00 37.07 3.36
156 157 5.762279 TCCCTAGATGGTTTTGGTAATTCC 58.238 41.667 0.00 0.00 0.00 3.01
157 158 8.218488 ACTATCCCTAGATGGTTTTGGTAATTC 58.782 37.037 0.00 0.00 41.04 2.17
158 159 8.114301 ACTATCCCTAGATGGTTTTGGTAATT 57.886 34.615 0.00 0.00 41.04 1.40
159 160 7.707467 ACTATCCCTAGATGGTTTTGGTAAT 57.293 36.000 0.00 0.00 41.04 1.89
182 183 2.368548 AGGGGGAAATTGAAAGTGCAAC 59.631 45.455 0.00 0.00 0.00 4.17
183 184 2.688477 AGGGGGAAATTGAAAGTGCAA 58.312 42.857 0.00 0.00 0.00 4.08
184 185 2.397044 AGGGGGAAATTGAAAGTGCA 57.603 45.000 0.00 0.00 0.00 4.57
185 186 3.769739 AAAGGGGGAAATTGAAAGTGC 57.230 42.857 0.00 0.00 0.00 4.40
186 187 4.821260 CCAAAAAGGGGGAAATTGAAAGTG 59.179 41.667 0.00 0.00 0.00 3.16
187 188 4.476846 ACCAAAAAGGGGGAAATTGAAAGT 59.523 37.500 0.00 0.00 43.89 2.66
188 189 5.047566 ACCAAAAAGGGGGAAATTGAAAG 57.952 39.130 0.00 0.00 43.89 2.62
189 190 6.576778 TTACCAAAAAGGGGGAAATTGAAA 57.423 33.333 0.00 0.00 43.89 2.69
190 191 6.771934 ATTACCAAAAAGGGGGAAATTGAA 57.228 33.333 0.00 0.00 43.89 2.69
191 192 6.330250 TCAATTACCAAAAAGGGGGAAATTGA 59.670 34.615 14.74 14.74 42.83 2.57
192 193 6.538263 TCAATTACCAAAAAGGGGGAAATTG 58.462 36.000 11.91 11.91 43.89 2.32
193 194 6.771934 TCAATTACCAAAAAGGGGGAAATT 57.228 33.333 0.00 0.00 43.89 1.82
194 195 6.503570 TCATCAATTACCAAAAAGGGGGAAAT 59.496 34.615 0.00 0.00 43.89 2.17
195 196 5.846714 TCATCAATTACCAAAAAGGGGGAAA 59.153 36.000 0.00 0.00 43.89 3.13
196 197 5.247337 GTCATCAATTACCAAAAAGGGGGAA 59.753 40.000 0.00 0.00 43.89 3.97
197 198 4.775253 GTCATCAATTACCAAAAAGGGGGA 59.225 41.667 0.00 0.00 43.89 4.81
198 199 4.530161 TGTCATCAATTACCAAAAAGGGGG 59.470 41.667 0.00 0.00 43.89 5.40
199 200 5.736951 TGTCATCAATTACCAAAAAGGGG 57.263 39.130 0.00 0.00 43.89 4.79
200 201 6.520272 TGTTGTCATCAATTACCAAAAAGGG 58.480 36.000 0.00 0.00 37.54 3.95
201 202 9.874205 ATATGTTGTCATCAATTACCAAAAAGG 57.126 29.630 0.00 0.00 38.51 3.11
212 213 9.570468 AGCTTTGATCTATATGTTGTCATCAAT 57.430 29.630 0.00 0.00 35.92 2.57
213 214 8.969260 AGCTTTGATCTATATGTTGTCATCAA 57.031 30.769 0.00 0.00 35.70 2.57
214 215 8.969260 AAGCTTTGATCTATATGTTGTCATCA 57.031 30.769 0.00 0.00 35.70 3.07
215 216 8.219769 CGAAGCTTTGATCTATATGTTGTCATC 58.780 37.037 8.08 0.00 35.70 2.92
216 217 7.928167 TCGAAGCTTTGATCTATATGTTGTCAT 59.072 33.333 12.62 0.00 38.00 3.06
217 218 7.222805 GTCGAAGCTTTGATCTATATGTTGTCA 59.777 37.037 19.35 0.00 0.00 3.58
218 219 7.222805 TGTCGAAGCTTTGATCTATATGTTGTC 59.777 37.037 19.35 2.82 0.00 3.18
219 220 7.041721 TGTCGAAGCTTTGATCTATATGTTGT 58.958 34.615 19.35 0.00 0.00 3.32
220 221 7.468922 TGTCGAAGCTTTGATCTATATGTTG 57.531 36.000 19.35 0.00 0.00 3.33
221 222 8.492673 TTTGTCGAAGCTTTGATCTATATGTT 57.507 30.769 19.35 0.00 0.00 2.71
222 223 8.554528 CATTTGTCGAAGCTTTGATCTATATGT 58.445 33.333 19.35 0.00 0.00 2.29
223 224 8.768019 TCATTTGTCGAAGCTTTGATCTATATG 58.232 33.333 19.35 16.66 0.00 1.78
224 225 8.893219 TCATTTGTCGAAGCTTTGATCTATAT 57.107 30.769 19.35 7.45 0.00 0.86
225 226 8.893219 ATCATTTGTCGAAGCTTTGATCTATA 57.107 30.769 19.35 5.11 0.00 1.31
226 227 7.798596 ATCATTTGTCGAAGCTTTGATCTAT 57.201 32.000 19.35 9.91 0.00 1.98
227 228 8.716646 TTATCATTTGTCGAAGCTTTGATCTA 57.283 30.769 19.35 8.12 0.00 1.98
228 229 7.615582 TTATCATTTGTCGAAGCTTTGATCT 57.384 32.000 19.35 2.56 0.00 2.75
229 230 9.935682 TTATTATCATTTGTCGAAGCTTTGATC 57.064 29.630 19.35 13.05 0.00 2.92
230 231 9.941664 CTTATTATCATTTGTCGAAGCTTTGAT 57.058 29.630 19.35 14.77 0.00 2.57
231 232 9.161629 TCTTATTATCATTTGTCGAAGCTTTGA 57.838 29.630 12.62 12.62 0.00 2.69
232 233 9.430838 CTCTTATTATCATTTGTCGAAGCTTTG 57.569 33.333 7.44 7.44 0.00 2.77
233 234 9.167311 ACTCTTATTATCATTTGTCGAAGCTTT 57.833 29.630 0.00 0.00 0.00 3.51
234 235 8.607459 CACTCTTATTATCATTTGTCGAAGCTT 58.393 33.333 0.00 0.00 0.00 3.74
235 236 7.981789 TCACTCTTATTATCATTTGTCGAAGCT 59.018 33.333 0.00 0.00 0.00 3.74
236 237 8.131455 TCACTCTTATTATCATTTGTCGAAGC 57.869 34.615 0.00 0.00 0.00 3.86
264 265 9.496873 TCTTTCGATCCTACAATGAGTTTTTAA 57.503 29.630 0.00 0.00 0.00 1.52
265 266 9.496873 TTCTTTCGATCCTACAATGAGTTTTTA 57.503 29.630 0.00 0.00 0.00 1.52
266 267 7.979444 TCTTTCGATCCTACAATGAGTTTTT 57.021 32.000 0.00 0.00 0.00 1.94
267 268 7.979444 TTCTTTCGATCCTACAATGAGTTTT 57.021 32.000 0.00 0.00 0.00 2.43
268 269 7.979444 TTTCTTTCGATCCTACAATGAGTTT 57.021 32.000 0.00 0.00 0.00 2.66
269 270 7.607991 ACATTTCTTTCGATCCTACAATGAGTT 59.392 33.333 8.64 0.00 0.00 3.01
270 271 7.106239 ACATTTCTTTCGATCCTACAATGAGT 58.894 34.615 8.64 0.00 0.00 3.41
271 272 7.545362 ACATTTCTTTCGATCCTACAATGAG 57.455 36.000 8.64 0.00 0.00 2.90
272 273 7.148255 CCAACATTTCTTTCGATCCTACAATGA 60.148 37.037 8.64 0.00 0.00 2.57
273 274 6.968904 CCAACATTTCTTTCGATCCTACAATG 59.031 38.462 0.00 0.00 0.00 2.82
274 275 6.404734 GCCAACATTTCTTTCGATCCTACAAT 60.405 38.462 0.00 0.00 0.00 2.71
275 276 5.106317 GCCAACATTTCTTTCGATCCTACAA 60.106 40.000 0.00 0.00 0.00 2.41
276 277 4.394920 GCCAACATTTCTTTCGATCCTACA 59.605 41.667 0.00 0.00 0.00 2.74
277 278 4.636206 AGCCAACATTTCTTTCGATCCTAC 59.364 41.667 0.00 0.00 0.00 3.18
278 279 4.635765 CAGCCAACATTTCTTTCGATCCTA 59.364 41.667 0.00 0.00 0.00 2.94
279 280 3.441572 CAGCCAACATTTCTTTCGATCCT 59.558 43.478 0.00 0.00 0.00 3.24
280 281 3.440173 TCAGCCAACATTTCTTTCGATCC 59.560 43.478 0.00 0.00 0.00 3.36
281 282 4.685169 TCAGCCAACATTTCTTTCGATC 57.315 40.909 0.00 0.00 0.00 3.69
282 283 5.010012 ACTTTCAGCCAACATTTCTTTCGAT 59.990 36.000 0.00 0.00 0.00 3.59
283 284 4.338118 ACTTTCAGCCAACATTTCTTTCGA 59.662 37.500 0.00 0.00 0.00 3.71
284 285 4.610945 ACTTTCAGCCAACATTTCTTTCG 58.389 39.130 0.00 0.00 0.00 3.46
285 286 6.042143 TCAACTTTCAGCCAACATTTCTTTC 58.958 36.000 0.00 0.00 0.00 2.62
286 287 5.976458 TCAACTTTCAGCCAACATTTCTTT 58.024 33.333 0.00 0.00 0.00 2.52
287 288 5.596836 TCAACTTTCAGCCAACATTTCTT 57.403 34.783 0.00 0.00 0.00 2.52
288 289 5.302568 TCATCAACTTTCAGCCAACATTTCT 59.697 36.000 0.00 0.00 0.00 2.52
289 290 5.403466 GTCATCAACTTTCAGCCAACATTTC 59.597 40.000 0.00 0.00 0.00 2.17
290 291 5.163426 TGTCATCAACTTTCAGCCAACATTT 60.163 36.000 0.00 0.00 0.00 2.32
291 292 4.341806 TGTCATCAACTTTCAGCCAACATT 59.658 37.500 0.00 0.00 0.00 2.71
292 293 3.890756 TGTCATCAACTTTCAGCCAACAT 59.109 39.130 0.00 0.00 0.00 2.71
293 294 3.286353 TGTCATCAACTTTCAGCCAACA 58.714 40.909 0.00 0.00 0.00 3.33
294 295 3.988379 TGTCATCAACTTTCAGCCAAC 57.012 42.857 0.00 0.00 0.00 3.77
295 296 3.305539 GCATGTCATCAACTTTCAGCCAA 60.306 43.478 0.00 0.00 0.00 4.52
296 297 2.229543 GCATGTCATCAACTTTCAGCCA 59.770 45.455 0.00 0.00 0.00 4.75
297 298 2.490903 AGCATGTCATCAACTTTCAGCC 59.509 45.455 0.00 0.00 0.00 4.85
298 299 3.844577 AGCATGTCATCAACTTTCAGC 57.155 42.857 0.00 0.00 0.00 4.26
299 300 6.805271 CCTAAAAGCATGTCATCAACTTTCAG 59.195 38.462 0.00 2.36 34.90 3.02
300 301 6.680810 CCTAAAAGCATGTCATCAACTTTCA 58.319 36.000 0.00 0.00 34.90 2.69
301 302 5.574443 GCCTAAAAGCATGTCATCAACTTTC 59.426 40.000 0.00 0.00 34.90 2.62
302 303 5.244626 AGCCTAAAAGCATGTCATCAACTTT 59.755 36.000 0.00 1.04 36.36 2.66
303 304 4.768968 AGCCTAAAAGCATGTCATCAACTT 59.231 37.500 0.00 0.00 34.23 2.66
304 305 4.338879 AGCCTAAAAGCATGTCATCAACT 58.661 39.130 0.00 0.00 34.23 3.16
305 306 4.708726 AGCCTAAAAGCATGTCATCAAC 57.291 40.909 0.00 0.00 34.23 3.18
306 307 4.618927 GCAAGCCTAAAAGCATGTCATCAA 60.619 41.667 0.00 0.00 34.06 2.57
307 308 3.119388 GCAAGCCTAAAAGCATGTCATCA 60.119 43.478 0.00 0.00 34.06 3.07
308 309 3.129988 AGCAAGCCTAAAAGCATGTCATC 59.870 43.478 0.00 0.00 34.06 2.92
309 310 3.094572 AGCAAGCCTAAAAGCATGTCAT 58.905 40.909 0.00 0.00 34.06 3.06
310 311 2.517959 AGCAAGCCTAAAAGCATGTCA 58.482 42.857 0.00 0.00 34.06 3.58
311 312 3.582714 AAGCAAGCCTAAAAGCATGTC 57.417 42.857 0.00 0.00 34.06 3.06
312 313 3.826157 TGTAAGCAAGCCTAAAAGCATGT 59.174 39.130 0.00 0.00 34.06 3.21
313 314 4.439305 TGTAAGCAAGCCTAAAAGCATG 57.561 40.909 0.00 0.00 34.65 4.06
314 315 5.185635 TCAATGTAAGCAAGCCTAAAAGCAT 59.814 36.000 0.00 0.00 34.23 3.79
315 316 4.522405 TCAATGTAAGCAAGCCTAAAAGCA 59.478 37.500 0.00 0.00 34.23 3.91
316 317 5.059404 TCAATGTAAGCAAGCCTAAAAGC 57.941 39.130 0.00 0.00 0.00 3.51
317 318 6.749118 GTCATCAATGTAAGCAAGCCTAAAAG 59.251 38.462 0.00 0.00 0.00 2.27
318 319 6.208402 TGTCATCAATGTAAGCAAGCCTAAAA 59.792 34.615 0.00 0.00 0.00 1.52
319 320 5.709631 TGTCATCAATGTAAGCAAGCCTAAA 59.290 36.000 0.00 0.00 0.00 1.85
320 321 5.252547 TGTCATCAATGTAAGCAAGCCTAA 58.747 37.500 0.00 0.00 0.00 2.69
321 322 4.842574 TGTCATCAATGTAAGCAAGCCTA 58.157 39.130 0.00 0.00 0.00 3.93
322 323 3.689347 TGTCATCAATGTAAGCAAGCCT 58.311 40.909 0.00 0.00 0.00 4.58
323 324 4.142315 ACATGTCATCAATGTAAGCAAGCC 60.142 41.667 0.00 0.00 0.00 4.35
324 325 4.796830 CACATGTCATCAATGTAAGCAAGC 59.203 41.667 0.00 0.00 0.00 4.01
325 326 5.946298 ACACATGTCATCAATGTAAGCAAG 58.054 37.500 0.00 0.00 0.00 4.01
326 327 5.963176 ACACATGTCATCAATGTAAGCAA 57.037 34.783 0.00 0.00 0.00 3.91
327 328 7.628769 ATTACACATGTCATCAATGTAAGCA 57.371 32.000 14.57 0.18 39.85 3.91
328 329 8.830580 ACTATTACACATGTCATCAATGTAAGC 58.169 33.333 14.57 0.00 39.85 3.09
331 332 8.611757 GCAACTATTACACATGTCATCAATGTA 58.388 33.333 0.00 0.00 32.06 2.29
332 333 7.337689 AGCAACTATTACACATGTCATCAATGT 59.662 33.333 0.00 0.00 33.53 2.71
333 334 7.700505 AGCAACTATTACACATGTCATCAATG 58.299 34.615 0.00 0.00 0.00 2.82
334 335 7.870509 AGCAACTATTACACATGTCATCAAT 57.129 32.000 0.00 0.00 0.00 2.57
335 336 7.686438 AAGCAACTATTACACATGTCATCAA 57.314 32.000 0.00 0.00 0.00 2.57
336 337 7.390162 TCAAAGCAACTATTACACATGTCATCA 59.610 33.333 0.00 0.00 0.00 3.07
337 338 7.751732 TCAAAGCAACTATTACACATGTCATC 58.248 34.615 0.00 0.00 0.00 2.92
338 339 7.627088 GCTCAAAGCAACTATTACACATGTCAT 60.627 37.037 0.00 0.00 41.89 3.06
339 340 6.348458 GCTCAAAGCAACTATTACACATGTCA 60.348 38.462 0.00 0.00 41.89 3.58
340 341 6.024049 GCTCAAAGCAACTATTACACATGTC 58.976 40.000 0.00 0.00 41.89 3.06
341 342 5.707298 AGCTCAAAGCAACTATTACACATGT 59.293 36.000 0.00 0.00 45.56 3.21
342 343 6.187125 AGCTCAAAGCAACTATTACACATG 57.813 37.500 1.29 0.00 45.56 3.21
343 344 6.540189 CCTAGCTCAAAGCAACTATTACACAT 59.460 38.462 0.00 0.00 45.56 3.21
344 345 5.874810 CCTAGCTCAAAGCAACTATTACACA 59.125 40.000 0.00 0.00 45.56 3.72
345 346 5.294552 CCCTAGCTCAAAGCAACTATTACAC 59.705 44.000 0.00 0.00 45.56 2.90
346 347 5.188948 TCCCTAGCTCAAAGCAACTATTACA 59.811 40.000 0.00 0.00 45.56 2.41
347 348 5.671493 TCCCTAGCTCAAAGCAACTATTAC 58.329 41.667 0.00 0.00 45.56 1.89
348 349 5.950544 TCCCTAGCTCAAAGCAACTATTA 57.049 39.130 0.00 0.00 45.56 0.98
349 350 4.844349 TCCCTAGCTCAAAGCAACTATT 57.156 40.909 0.00 0.00 45.56 1.73
350 351 5.604650 ACTATCCCTAGCTCAAAGCAACTAT 59.395 40.000 0.00 0.00 45.56 2.12
351 352 4.962995 ACTATCCCTAGCTCAAAGCAACTA 59.037 41.667 0.00 0.00 45.56 2.24
352 353 3.777522 ACTATCCCTAGCTCAAAGCAACT 59.222 43.478 0.00 0.00 45.56 3.16
353 354 4.143986 ACTATCCCTAGCTCAAAGCAAC 57.856 45.455 0.00 0.00 45.56 4.17
354 355 4.517285 CAACTATCCCTAGCTCAAAGCAA 58.483 43.478 0.00 0.00 45.56 3.91
355 356 3.682718 GCAACTATCCCTAGCTCAAAGCA 60.683 47.826 0.00 0.00 45.56 3.91
356 357 2.875317 GCAACTATCCCTAGCTCAAAGC 59.125 50.000 0.00 0.00 42.84 3.51
357 358 3.873952 GTGCAACTATCCCTAGCTCAAAG 59.126 47.826 0.00 0.00 0.00 2.77
358 359 3.873910 GTGCAACTATCCCTAGCTCAAA 58.126 45.455 0.00 0.00 0.00 2.69
359 360 3.543680 GTGCAACTATCCCTAGCTCAA 57.456 47.619 0.00 0.00 0.00 3.02
373 374 8.708742 GGACTTAAAATCCAATAAAAGTGCAAC 58.291 33.333 0.00 0.00 35.94 4.17
374 375 8.424918 TGGACTTAAAATCCAATAAAAGTGCAA 58.575 29.630 5.78 0.00 43.43 4.08
375 376 7.957002 TGGACTTAAAATCCAATAAAAGTGCA 58.043 30.769 5.78 3.55 43.43 4.57
412 414 8.041323 TGCCCTAACAAAGTAAAATTTTGTCAA 58.959 29.630 13.76 0.00 45.28 3.18
413 415 7.556844 TGCCCTAACAAAGTAAAATTTTGTCA 58.443 30.769 13.76 0.00 45.28 3.58
414 416 8.332464 GTTGCCCTAACAAAGTAAAATTTTGTC 58.668 33.333 13.76 6.74 45.28 3.18
415 417 7.824779 TGTTGCCCTAACAAAGTAAAATTTTGT 59.175 29.630 13.76 0.02 45.86 2.83
416 418 8.202745 TGTTGCCCTAACAAAGTAAAATTTTG 57.797 30.769 13.76 0.00 45.86 2.44
465 467 7.031975 GCTGAAAAGCATAGTTTTTATCTGCT 58.968 34.615 0.00 0.00 44.62 4.24
505 507 5.706369 ACTATCACTAGCTATGTAACCGAGG 59.294 44.000 0.00 0.00 0.00 4.63
516 518 3.898482 TGTGCCTGACTATCACTAGCTA 58.102 45.455 0.00 0.00 0.00 3.32
517 519 2.739943 TGTGCCTGACTATCACTAGCT 58.260 47.619 0.00 0.00 0.00 3.32
518 520 3.526931 TTGTGCCTGACTATCACTAGC 57.473 47.619 0.00 0.00 0.00 3.42
519 521 6.992063 ATTTTTGTGCCTGACTATCACTAG 57.008 37.500 0.00 0.00 0.00 2.57
582 584 2.125326 CAGCGTAGGGATGTCCGGA 61.125 63.158 0.00 0.00 41.52 5.14
585 587 0.824759 AACTCAGCGTAGGGATGTCC 59.175 55.000 0.00 0.00 32.65 4.02
591 593 4.451629 TCTCTTTAAACTCAGCGTAGGG 57.548 45.455 0.00 0.00 0.00 3.53
598 600 5.004448 GGTTCCCCTTCTCTTTAAACTCAG 58.996 45.833 0.00 0.00 0.00 3.35
620 622 4.095483 CACGAAGATGAATTGAAGAAGGGG 59.905 45.833 0.00 0.00 0.00 4.79
656 658 4.442192 GGAGCAAACCACACCACAAAAATA 60.442 41.667 0.00 0.00 0.00 1.40
657 659 3.530535 GAGCAAACCACACCACAAAAAT 58.469 40.909 0.00 0.00 0.00 1.82
662 664 0.751277 CTGGAGCAAACCACACCACA 60.751 55.000 0.00 0.00 35.91 4.17
672 674 3.255642 GCATTAAGGTTCACTGGAGCAAA 59.744 43.478 0.00 0.00 0.00 3.68
681 683 8.483307 AAATCATCAAATGCATTAAGGTTCAC 57.517 30.769 13.39 0.00 0.00 3.18
696 698 6.507958 TGCATTAAGACCGAAATCATCAAA 57.492 33.333 0.00 0.00 0.00 2.69
705 707 3.395639 AGAACGTTGCATTAAGACCGAA 58.604 40.909 5.00 0.00 0.00 4.30
721 723 3.486841 TCGGTTTTGAACGAAGTAGAACG 59.513 43.478 0.00 0.00 45.00 3.95
727 729 2.635714 AACCTCGGTTTTGAACGAAGT 58.364 42.857 0.00 0.00 37.43 3.01
734 736 2.938838 ACCATGAAACCTCGGTTTTGA 58.061 42.857 14.70 6.19 46.80 2.69
744 746 6.040166 AGCATGATCTGAATTACCATGAAACC 59.960 38.462 0.00 0.00 37.41 3.27
766 768 4.524053 TCCTACTCTATCGACTTTCAGCA 58.476 43.478 0.00 0.00 0.00 4.41
767 769 5.502153 TTCCTACTCTATCGACTTTCAGC 57.498 43.478 0.00 0.00 0.00 4.26
768 770 6.263392 TCCATTCCTACTCTATCGACTTTCAG 59.737 42.308 0.00 0.00 0.00 3.02
769 771 6.039493 GTCCATTCCTACTCTATCGACTTTCA 59.961 42.308 0.00 0.00 0.00 2.69
771 773 5.008811 CGTCCATTCCTACTCTATCGACTTT 59.991 44.000 0.00 0.00 0.00 2.66
772 774 4.515944 CGTCCATTCCTACTCTATCGACTT 59.484 45.833 0.00 0.00 0.00 3.01
773 775 4.066490 CGTCCATTCCTACTCTATCGACT 58.934 47.826 0.00 0.00 0.00 4.18
774 776 3.814283 ACGTCCATTCCTACTCTATCGAC 59.186 47.826 0.00 0.00 0.00 4.20
776 778 3.609644 GCACGTCCATTCCTACTCTATCG 60.610 52.174 0.00 0.00 0.00 2.92
791 796 2.415625 CCTCTACACTACAAGCACGTCC 60.416 54.545 0.00 0.00 0.00 4.79
792 797 2.228343 ACCTCTACACTACAAGCACGTC 59.772 50.000 0.00 0.00 0.00 4.34
793 798 2.236766 ACCTCTACACTACAAGCACGT 58.763 47.619 0.00 0.00 0.00 4.49
794 799 2.987149 CAACCTCTACACTACAAGCACG 59.013 50.000 0.00 0.00 0.00 5.34
795 800 3.326747 CCAACCTCTACACTACAAGCAC 58.673 50.000 0.00 0.00 0.00 4.40
796 801 2.301870 CCCAACCTCTACACTACAAGCA 59.698 50.000 0.00 0.00 0.00 3.91
797 802 2.935676 GCCCAACCTCTACACTACAAGC 60.936 54.545 0.00 0.00 0.00 4.01
798 803 2.567615 AGCCCAACCTCTACACTACAAG 59.432 50.000 0.00 0.00 0.00 3.16
799 804 2.616524 AGCCCAACCTCTACACTACAA 58.383 47.619 0.00 0.00 0.00 2.41
800 805 2.301870 CAAGCCCAACCTCTACACTACA 59.698 50.000 0.00 0.00 0.00 2.74
801 806 2.302157 ACAAGCCCAACCTCTACACTAC 59.698 50.000 0.00 0.00 0.00 2.73
833 838 0.237235 TCGTGTTGCGCAAATTCCTC 59.763 50.000 26.87 11.98 41.07 3.71
850 855 1.835121 TCAGAGTTGTCGTGTGTTCG 58.165 50.000 0.00 0.00 0.00 3.95
858 863 6.912051 TGAATTCAAAACATTCAGAGTTGTCG 59.088 34.615 5.45 0.00 36.03 4.35
973 981 2.052690 CGGGGTGTCTGACGAGGAT 61.053 63.158 2.98 0.00 0.00 3.24
988 996 0.732538 GCCTGCATTTCGTTTTCGGG 60.733 55.000 0.00 0.00 44.25 5.14
1075 1101 0.249238 GCGTCGCTGAGGATTGAGAT 60.249 55.000 10.68 0.00 0.00 2.75
1080 1106 3.449227 TCCGCGTCGCTGAGGATT 61.449 61.111 16.36 0.00 32.50 3.01
1163 1189 4.083862 GGAGGGTGGTGAGCGACC 62.084 72.222 1.14 1.14 46.37 4.79
1255 1281 4.082523 CCAGGAGGCCGCGAAGAA 62.083 66.667 8.23 0.00 0.00 2.52
1446 1472 1.408822 GCCATGTTTAGGAGGGAGGTG 60.409 57.143 0.00 0.00 0.00 4.00
1720 1746 2.217750 CATCTCGTCGAGGAGAGACAT 58.782 52.381 33.43 19.72 45.59 3.06
1767 1793 1.366111 CGATGGGGTTGCAGGTAACG 61.366 60.000 0.00 0.00 46.39 3.18
2080 2106 2.372172 CCAGGAGGTTGTAAGTGGTCTT 59.628 50.000 0.00 0.00 37.65 3.01
2172 2198 1.888512 GTTGCCAGATCAGCCTCAAAA 59.111 47.619 5.41 0.00 0.00 2.44
2179 2205 0.109412 GTGCTTGTTGCCAGATCAGC 60.109 55.000 0.00 0.00 42.00 4.26
2226 2252 2.290260 ACATGCTTCCTCAAACCGATGA 60.290 45.455 0.00 0.00 0.00 2.92
2517 2543 8.725148 TCAGTTTCTTCATCATCTTTTAGCTTC 58.275 33.333 0.00 0.00 0.00 3.86
2568 2594 8.070171 CCATATACTCTTTTTCTAATGTTGGCG 58.930 37.037 0.00 0.00 0.00 5.69
2717 2743 2.181975 CATCCCAAAGGGCAATCAACT 58.818 47.619 0.00 0.00 43.94 3.16
2752 2778 6.150396 ACAGGATTAGAGGTTACAATCTCG 57.850 41.667 0.00 0.00 41.09 4.04
2940 2966 3.620374 CCACACTGACATCATGTAGAAGC 59.380 47.826 0.00 0.00 0.00 3.86
2948 2974 3.149196 GGTTGTTCCACACTGACATCAT 58.851 45.455 0.00 0.00 35.97 2.45
2961 2987 1.073284 TCTAACAGGCCAGGTTGTTCC 59.927 52.381 19.66 0.00 38.41 3.62
2965 2991 2.359900 GTGATCTAACAGGCCAGGTTG 58.640 52.381 19.66 5.70 0.00 3.77
3013 3040 9.817365 GAAGTACATCACATATGCATGATTAAC 57.183 33.333 17.99 12.72 33.18 2.01
3181 3209 5.435291 AGTAAGCAATGGAATCCTTCAGAG 58.565 41.667 0.00 0.00 0.00 3.35
3229 3257 3.118956 AGCAACGAGTTCTTAGCTAGCAT 60.119 43.478 18.83 4.67 0.00 3.79
3321 3349 5.844516 TCTAGTACAATGGAATCCTTAGGGG 59.155 44.000 0.00 0.00 0.00 4.79
3322 3350 6.996180 TCTAGTACAATGGAATCCTTAGGG 57.004 41.667 0.00 0.00 0.00 3.53
3412 3440 6.016943 CCAAAAGGTTTGTTTGATTGCATCAT 60.017 34.615 0.00 0.00 39.39 2.45
3413 3441 5.296283 CCAAAAGGTTTGTTTGATTGCATCA 59.704 36.000 0.00 0.00 38.05 3.07
3416 3444 4.394300 CACCAAAAGGTTTGTTTGATTGCA 59.606 37.500 0.00 0.00 38.05 4.08
3446 3474 3.131396 CCGCGTGAAGCCTATAAGATTT 58.869 45.455 4.92 0.00 44.76 2.17
3584 3612 3.581024 TGGGTCTTACATCACGTGTAC 57.419 47.619 16.51 3.89 42.82 2.90
3610 3638 3.489813 GTGATTCACCCAAAACCGC 57.510 52.632 5.44 0.00 0.00 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.