Multiple sequence alignment - TraesCS5A01G050700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G050700 chr5A 100.000 2663 0 0 1 2663 46248036 46245374 0.000000e+00 4918
1 TraesCS5A01G050700 chr7A 80.952 2646 439 55 55 2663 546043058 546040441 0.000000e+00 2034
2 TraesCS5A01G050700 chr7A 79.871 2638 471 47 63 2663 38757409 38760023 0.000000e+00 1875
3 TraesCS5A01G050700 chr3B 81.025 1112 174 15 978 2056 741380830 741381937 0.000000e+00 850
4 TraesCS5A01G050700 chr3B 89.328 253 27 0 55 307 741380503 741380755 4.280000e-83 318
5 TraesCS5A01G050700 chr7B 74.603 252 62 2 671 921 676866649 676866899 2.800000e-20 110


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G050700 chr5A 46245374 46248036 2662 True 4918 4918 100.0000 1 2663 1 chr5A.!!$R1 2662
1 TraesCS5A01G050700 chr7A 546040441 546043058 2617 True 2034 2034 80.9520 55 2663 1 chr7A.!!$R1 2608
2 TraesCS5A01G050700 chr7A 38757409 38760023 2614 False 1875 1875 79.8710 63 2663 1 chr7A.!!$F1 2600
3 TraesCS5A01G050700 chr3B 741380503 741381937 1434 False 584 850 85.1765 55 2056 2 chr3B.!!$F1 2001

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
397 398 0.110056 GTGCCAAGATGACAAGCACG 60.110 55.0 0.0 0.0 43.7 5.34 F
1485 1497 0.034896 AGGCACCGTACAAAGGACTG 59.965 55.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1623 1635 0.036388 ATGGCCTAGTCCACGTGTTG 60.036 55.0 15.65 0.0 39.25 3.33 R
2642 2682 0.111061 TCCCTGAGCTTGCACACATT 59.889 50.0 0.00 0.0 0.00 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.828299 TTTTCCTTAACCCTCGCAATATG 57.172 39.130 0.00 0.00 0.00 1.78
23 24 4.764050 TTCCTTAACCCTCGCAATATGA 57.236 40.909 0.00 0.00 0.00 2.15
24 25 4.764050 TCCTTAACCCTCGCAATATGAA 57.236 40.909 0.00 0.00 0.00 2.57
25 26 5.105567 TCCTTAACCCTCGCAATATGAAA 57.894 39.130 0.00 0.00 0.00 2.69
26 27 5.502079 TCCTTAACCCTCGCAATATGAAAA 58.498 37.500 0.00 0.00 0.00 2.29
27 28 6.126409 TCCTTAACCCTCGCAATATGAAAAT 58.874 36.000 0.00 0.00 0.00 1.82
28 29 6.039270 TCCTTAACCCTCGCAATATGAAAATG 59.961 38.462 0.00 0.00 0.00 2.32
29 30 3.715628 ACCCTCGCAATATGAAAATGC 57.284 42.857 0.00 0.00 36.74 3.56
30 31 3.023119 ACCCTCGCAATATGAAAATGCA 58.977 40.909 0.00 0.00 40.04 3.96
31 32 3.638160 ACCCTCGCAATATGAAAATGCAT 59.362 39.130 0.00 0.00 40.04 3.96
32 33 4.826733 ACCCTCGCAATATGAAAATGCATA 59.173 37.500 0.00 0.00 40.04 3.14
33 34 5.477984 ACCCTCGCAATATGAAAATGCATAT 59.522 36.000 0.00 0.00 41.85 1.78
34 35 6.015180 ACCCTCGCAATATGAAAATGCATATT 60.015 34.615 0.00 1.45 46.81 1.28
42 43 5.601583 ATGAAAATGCATATTGTCAGCCA 57.398 34.783 0.00 0.00 42.32 4.75
43 44 5.601583 TGAAAATGCATATTGTCAGCCAT 57.398 34.783 0.00 0.00 35.97 4.40
44 45 5.353111 TGAAAATGCATATTGTCAGCCATG 58.647 37.500 0.00 0.00 35.97 3.66
45 46 5.127356 TGAAAATGCATATTGTCAGCCATGA 59.873 36.000 0.00 0.00 35.97 3.07
99 100 3.198417 TCCAAATCAGTGCAGAGCTATGA 59.802 43.478 13.69 0.00 0.00 2.15
113 114 6.713520 CAGAGCTATGAAACTAGCAATCAAC 58.286 40.000 0.88 0.00 45.35 3.18
179 180 5.163943 CGTACTAAAGAAGGCAAAAGAGAGC 60.164 44.000 0.00 0.00 0.00 4.09
191 192 2.344093 AAGAGAGCCTGGGTCCTTTA 57.656 50.000 21.54 0.00 0.00 1.85
232 233 3.073798 TCCAGGCTGATTTCCACAAAGTA 59.926 43.478 17.94 0.00 0.00 2.24
271 272 0.179161 AAGATGAGTTCGAGACGGCG 60.179 55.000 4.80 4.80 0.00 6.46
292 293 3.626930 GTGGGGCATGTTACTGGATAAA 58.373 45.455 0.00 0.00 0.00 1.40
307 308 7.346751 ACTGGATAAATACAATTTGCGGAAT 57.653 32.000 0.00 0.00 0.00 3.01
310 311 7.950512 TGGATAAATACAATTTGCGGAATCAT 58.049 30.769 0.00 0.00 0.00 2.45
316 317 4.362279 ACAATTTGCGGAATCATGCATAC 58.638 39.130 0.00 0.00 41.42 2.39
340 341 7.044181 ACATGACACAGATTTATGAGATTCGT 58.956 34.615 0.00 0.00 0.00 3.85
342 343 9.034544 CATGACACAGATTTATGAGATTCGTAA 57.965 33.333 0.00 0.00 0.00 3.18
356 357 6.096673 AGATTCGTAAAAAGTGGGCAAAAT 57.903 33.333 0.00 0.00 0.00 1.82
361 362 7.164230 TCGTAAAAAGTGGGCAAAATCATAT 57.836 32.000 0.00 0.00 0.00 1.78
364 365 8.379902 CGTAAAAAGTGGGCAAAATCATATTTC 58.620 33.333 0.00 0.00 0.00 2.17
391 392 3.066621 GTGTTTTCTGTGCCAAGATGACA 59.933 43.478 0.00 0.00 0.00 3.58
397 398 0.110056 GTGCCAAGATGACAAGCACG 60.110 55.000 0.00 0.00 43.70 5.34
470 471 0.671163 CCCCATGCATGTGTTTGTGC 60.671 55.000 24.58 0.00 41.61 4.57
478 479 0.591170 ATGTGTTTGTGCGGCAGTAC 59.409 50.000 1.18 2.36 0.00 2.73
487 488 0.608130 TGCGGCAGTACATGAGACTT 59.392 50.000 0.00 0.00 0.00 3.01
493 494 4.033358 CGGCAGTACATGAGACTTCAATTC 59.967 45.833 0.00 0.00 36.78 2.17
497 498 5.289675 CAGTACATGAGACTTCAATTCGACC 59.710 44.000 0.00 0.00 36.78 4.79
512 513 3.358076 GACCGGGAGCGTGAAGAGG 62.358 68.421 6.32 0.00 0.00 3.69
540 541 5.582665 ACGAGGAGAAAAGAACTATGATTGC 59.417 40.000 0.00 0.00 0.00 3.56
544 545 7.170965 AGGAGAAAAGAACTATGATTGCAAGA 58.829 34.615 4.94 0.00 0.00 3.02
547 548 8.345724 AGAAAAGAACTATGATTGCAAGACAT 57.654 30.769 20.26 20.26 0.00 3.06
549 550 7.692460 AAAGAACTATGATTGCAAGACATCA 57.308 32.000 20.08 12.74 0.00 3.07
555 556 7.978982 ACTATGATTGCAAGACATCAGTTTAC 58.021 34.615 20.08 0.00 0.00 2.01
556 557 5.627499 TGATTGCAAGACATCAGTTTACC 57.373 39.130 4.94 0.00 0.00 2.85
568 569 7.014615 AGACATCAGTTTACCTTTTTCATTGCT 59.985 33.333 0.00 0.00 0.00 3.91
569 570 6.925165 ACATCAGTTTACCTTTTTCATTGCTG 59.075 34.615 0.00 0.00 0.00 4.41
572 573 5.691754 CAGTTTACCTTTTTCATTGCTGACC 59.308 40.000 0.00 0.00 0.00 4.02
573 574 4.864704 TTACCTTTTTCATTGCTGACCC 57.135 40.909 0.00 0.00 0.00 4.46
575 576 1.885887 CCTTTTTCATTGCTGACCCGA 59.114 47.619 0.00 0.00 0.00 5.14
577 578 1.243902 TTTTCATTGCTGACCCGACC 58.756 50.000 0.00 0.00 0.00 4.79
578 579 0.953471 TTTCATTGCTGACCCGACCG 60.953 55.000 0.00 0.00 0.00 4.79
579 580 2.047274 CATTGCTGACCCGACCGT 60.047 61.111 0.00 0.00 0.00 4.83
582 583 2.552585 ATTGCTGACCCGACCGTACG 62.553 60.000 8.69 8.69 0.00 3.67
584 585 2.482374 CTGACCCGACCGTACGTC 59.518 66.667 15.21 10.70 38.21 4.34
587 588 1.285641 GACCCGACCGTACGTCAAA 59.714 57.895 15.21 0.00 42.07 2.69
588 589 0.318614 GACCCGACCGTACGTCAAAA 60.319 55.000 15.21 0.00 42.07 2.44
593 594 2.405025 CCGACCGTACGTCAAAACTAAC 59.595 50.000 15.21 0.00 42.07 2.34
594 595 3.042189 CGACCGTACGTCAAAACTAACA 58.958 45.455 15.21 0.00 42.07 2.41
599 600 5.523188 ACCGTACGTCAAAACTAACATTTGA 59.477 36.000 15.21 0.00 42.73 2.69
600 601 6.068931 CCGTACGTCAAAACTAACATTTGAG 58.931 40.000 15.21 1.07 44.81 3.02
602 603 7.339207 CGTACGTCAAAACTAACATTTGAGAA 58.661 34.615 7.22 0.00 44.81 2.87
604 605 9.103048 GTACGTCAAAACTAACATTTGAGAATG 57.897 33.333 0.00 0.00 44.81 2.67
629 630 9.729023 TGATATTCTTTTGTGTACAACTTTGTG 57.271 29.630 0.00 0.00 42.31 3.33
632 633 4.218635 TCTTTTGTGTACAACTTTGTGGCA 59.781 37.500 0.00 1.65 42.31 4.92
634 635 2.717390 TGTGTACAACTTTGTGGCACT 58.283 42.857 19.83 0.00 42.88 4.40
675 676 7.274250 GCAGTAAGAAGAACAAATTTGGCTATG 59.726 37.037 21.74 11.30 0.00 2.23
685 686 4.478531 TGGCTATGGAGAGGCACA 57.521 55.556 0.00 0.00 46.22 4.57
699 700 6.101150 TGGAGAGGCACACCAGTAAAATATAT 59.899 38.462 0.00 0.00 39.06 0.86
703 704 7.071950 AGAGGCACACCAGTAAAATATATACCA 59.928 37.037 0.00 0.00 39.06 3.25
708 709 9.436957 CACACCAGTAAAATATATACCAGATCC 57.563 37.037 0.00 0.00 0.00 3.36
726 727 3.874383 TCCATGTTTGAGGAGTTTGGA 57.126 42.857 0.00 0.00 0.00 3.53
748 749 1.952296 GGTTGCTGATGGAAGCCATAG 59.048 52.381 0.00 0.00 45.26 2.23
750 751 0.179009 TGCTGATGGAAGCCATAGCC 60.179 55.000 17.34 2.63 45.26 3.93
757 758 3.678056 TGGAAGCCATAGCCTATAACG 57.322 47.619 0.00 0.00 41.25 3.18
771 772 6.179040 AGCCTATAACGTAACGGAGATAGAT 58.821 40.000 0.00 0.00 0.00 1.98
810 811 0.525242 CAACCCACAATAATGCGGCG 60.525 55.000 0.51 0.51 0.00 6.46
813 814 0.453793 CCCACAATAATGCGGCGAAA 59.546 50.000 12.98 0.00 0.00 3.46
849 856 5.246307 AGCAGAGTTGTTTATGAGGTTACC 58.754 41.667 0.00 0.00 0.00 2.85
853 860 6.878923 CAGAGTTGTTTATGAGGTTACCATCA 59.121 38.462 3.51 5.12 0.00 3.07
854 861 7.065085 CAGAGTTGTTTATGAGGTTACCATCAG 59.935 40.741 3.51 0.00 0.00 2.90
855 862 6.779860 AGTTGTTTATGAGGTTACCATCAGT 58.220 36.000 3.51 0.00 0.00 3.41
864 871 5.163374 TGAGGTTACCATCAGTGATGATCAG 60.163 44.000 30.63 17.70 42.09 2.90
869 876 3.779183 ACCATCAGTGATGATCAGAAGGT 59.221 43.478 30.63 16.40 42.09 3.50
874 881 5.624159 TCAGTGATGATCAGAAGGTGTTTT 58.376 37.500 0.09 0.00 0.00 2.43
875 882 5.471116 TCAGTGATGATCAGAAGGTGTTTTG 59.529 40.000 0.09 0.00 0.00 2.44
876 883 4.217118 AGTGATGATCAGAAGGTGTTTTGC 59.783 41.667 0.09 0.00 0.00 3.68
891 898 1.667236 TTTGCTGTGAGTGTGGTCAG 58.333 50.000 0.00 0.00 0.00 3.51
894 901 1.065491 TGCTGTGAGTGTGGTCAGTTT 60.065 47.619 0.00 0.00 0.00 2.66
936 943 3.622455 GCAGCCACATTCTAAGGGTAAGT 60.622 47.826 0.00 0.00 0.00 2.24
938 945 5.741011 CAGCCACATTCTAAGGGTAAGTAA 58.259 41.667 0.00 0.00 0.00 2.24
963 970 9.651913 AAAAATGTTAAATGTTGTTCTGTGACT 57.348 25.926 0.00 0.00 0.00 3.41
982 989 7.484975 TGTGACTTAAAAGTTTGGTAACATGG 58.515 34.615 0.00 0.00 43.53 3.66
1017 1024 5.652452 GCAGGTTATGGAAATACTTCACCTT 59.348 40.000 0.00 0.00 33.88 3.50
1020 1027 7.066284 CAGGTTATGGAAATACTTCACCTTGAG 59.934 40.741 0.00 0.00 33.88 3.02
1026 1033 6.052360 GGAAATACTTCACCTTGAGGAGATC 58.948 44.000 3.59 0.00 34.81 2.75
1031 1038 1.362584 TCACCTTGAGGAGATCCCAGA 59.637 52.381 3.59 0.00 38.94 3.86
1032 1039 2.191400 CACCTTGAGGAGATCCCAGAA 58.809 52.381 3.59 0.00 38.94 3.02
1036 1043 4.263683 ACCTTGAGGAGATCCCAGAAAAAG 60.264 45.833 3.59 0.00 38.94 2.27
1080 1087 0.693049 ACGCAAGGGACATTCTTCCT 59.307 50.000 0.00 0.00 46.39 3.36
1110 1117 2.360801 GCAGCAGTACCAAAAGGACAAA 59.639 45.455 0.00 0.00 0.00 2.83
1111 1118 3.005791 GCAGCAGTACCAAAAGGACAAAT 59.994 43.478 0.00 0.00 0.00 2.32
1143 1150 3.369242 TCATTCACATGGAGGCATTCA 57.631 42.857 0.00 0.00 0.00 2.57
1155 1162 3.189287 GGAGGCATTCAACACTGTACTTG 59.811 47.826 0.00 0.00 0.00 3.16
1167 1174 5.865085 ACACTGTACTTGAAAGCTATGGAA 58.135 37.500 0.00 0.00 0.00 3.53
1217 1224 6.726230 CAGAATCATTTGACTTCATGCTAGG 58.274 40.000 0.00 0.00 0.00 3.02
1233 1240 1.347050 CTAGGTGGGCTGGATGATCTG 59.653 57.143 0.00 0.00 0.00 2.90
1236 1243 0.818445 GTGGGCTGGATGATCTGCTG 60.818 60.000 9.79 0.00 33.09 4.41
1273 1280 3.524095 TTGCAGAAAAGAGGGATGGAA 57.476 42.857 0.00 0.00 0.00 3.53
1275 1282 3.359033 TGCAGAAAAGAGGGATGGAATG 58.641 45.455 0.00 0.00 0.00 2.67
1278 1285 2.929043 AGAAAAGAGGGATGGAATGGGT 59.071 45.455 0.00 0.00 0.00 4.51
1291 1298 2.091541 GAATGGGTTTTGAGGATCGCA 58.908 47.619 0.00 0.00 38.61 5.10
1293 1300 1.750193 TGGGTTTTGAGGATCGCATC 58.250 50.000 0.00 0.00 38.61 3.91
1309 1316 1.656652 CATCACGACATTGGACCCTC 58.343 55.000 0.00 0.00 0.00 4.30
1314 1321 1.186200 CGACATTGGACCCTCTGAGA 58.814 55.000 6.17 0.00 0.00 3.27
1317 1324 1.625818 ACATTGGACCCTCTGAGACAC 59.374 52.381 6.17 0.00 0.00 3.67
1321 1328 1.427753 TGGACCCTCTGAGACACACTA 59.572 52.381 6.17 0.00 0.00 2.74
1323 1330 2.291024 GGACCCTCTGAGACACACTAGA 60.291 54.545 6.17 0.00 0.00 2.43
1350 1357 2.613506 GGTTGCTTTCGTGGTCGGG 61.614 63.158 0.00 0.00 37.69 5.14
1355 1362 1.366366 CTTTCGTGGTCGGGACAGT 59.634 57.895 0.75 0.00 37.69 3.55
1416 1423 0.622665 ATGACTTGCAAGGGCTAGCT 59.377 50.000 29.18 7.31 45.16 3.32
1417 1424 0.036010 TGACTTGCAAGGGCTAGCTC 60.036 55.000 29.18 11.51 45.16 4.09
1431 1438 0.905809 TAGCTCCACCCGGTAAGCAA 60.906 55.000 20.67 0.00 0.00 3.91
1477 1489 1.229082 AGGGAGAAGGCACCGTACA 60.229 57.895 0.00 0.00 0.00 2.90
1485 1497 0.034896 AGGCACCGTACAAAGGACTG 59.965 55.000 0.00 0.00 0.00 3.51
1489 1501 2.029649 GCACCGTACAAAGGACTGAGTA 60.030 50.000 0.00 0.00 0.00 2.59
1500 1512 1.202009 GGACTGAGTAGACGTACACGC 60.202 57.143 0.85 0.00 44.43 5.34
1547 1559 4.835615 AGGACACAAGAGAACTACATGTCT 59.164 41.667 0.00 0.00 35.06 3.41
1560 1572 5.721225 ACTACATGTCTTGATAGAGGGGAT 58.279 41.667 0.00 0.00 0.00 3.85
1589 1601 1.415672 AAGCCGAGGAAACCTGGTCA 61.416 55.000 0.00 0.00 31.76 4.02
1601 1613 3.788227 ACCTGGTCAATGCAAGAACTA 57.212 42.857 8.75 0.00 0.00 2.24
1623 1635 4.814294 ATCGAAGGTCACCGCCGC 62.814 66.667 6.09 0.00 0.00 6.53
1677 1689 7.295201 GTGCAAACTAGTTTTCGACATTCATA 58.705 34.615 18.25 0.00 0.00 2.15
1678 1690 7.268447 GTGCAAACTAGTTTTCGACATTCATAC 59.732 37.037 18.25 1.45 0.00 2.39
1706 1732 6.995511 TGGTTTCCCATTTCGATTTACTAG 57.004 37.500 0.00 0.00 35.17 2.57
1710 1736 5.367945 TCCCATTTCGATTTACTAGGCTT 57.632 39.130 0.00 0.00 0.00 4.35
1714 1740 4.593597 TTTCGATTTACTAGGCTTTGCG 57.406 40.909 0.00 0.00 0.00 4.85
1717 1743 2.927477 CGATTTACTAGGCTTTGCGACA 59.073 45.455 0.00 0.00 0.00 4.35
1718 1744 3.000322 CGATTTACTAGGCTTTGCGACAG 60.000 47.826 0.00 0.00 0.00 3.51
1719 1745 1.722011 TTACTAGGCTTTGCGACAGC 58.278 50.000 0.00 0.00 45.41 4.40
1724 1750 2.180017 GCTTTGCGACAGCCATGG 59.820 61.111 7.63 7.63 44.33 3.66
1726 1752 1.503542 CTTTGCGACAGCCATGGTC 59.496 57.895 14.67 5.80 44.33 4.02
1728 1754 1.236616 TTTGCGACAGCCATGGTCAG 61.237 55.000 14.67 6.14 44.33 3.51
1734 1763 0.892358 ACAGCCATGGTCAGCACTTG 60.892 55.000 14.67 1.95 0.00 3.16
1741 1770 0.467844 TGGTCAGCACTTGCATGGTT 60.468 50.000 3.62 0.00 45.16 3.67
1745 1774 1.001487 TCAGCACTTGCATGGTTTTCG 60.001 47.619 3.62 0.00 45.16 3.46
1767 1797 5.641636 TCGTAGTTGCATGCAGAAAAAGATA 59.358 36.000 21.50 0.00 0.00 1.98
1775 1805 7.475015 TGCATGCAGAAAAAGATAATGTAGTC 58.525 34.615 18.46 0.00 0.00 2.59
1783 1822 8.535335 AGAAAAAGATAATGTAGTCTCAGCTGA 58.465 33.333 17.19 17.19 0.00 4.26
1791 1830 1.273759 AGTCTCAGCTGAGCATCCAA 58.726 50.000 34.48 16.72 41.80 3.53
1808 1847 2.647299 TCCAAGCTCTTCCCCAATGTAA 59.353 45.455 0.00 0.00 0.00 2.41
1816 1855 8.224620 AGCTCTTCCCCAATGTAATAAGATAT 57.775 34.615 0.00 0.00 0.00 1.63
1845 1884 4.074259 CTGGATGTGTGTGAGGATTTTCA 58.926 43.478 0.00 0.00 0.00 2.69
1847 1886 5.078949 TGGATGTGTGTGAGGATTTTCATT 58.921 37.500 0.00 0.00 0.00 2.57
1848 1887 5.047872 TGGATGTGTGTGAGGATTTTCATTG 60.048 40.000 0.00 0.00 0.00 2.82
1854 1893 4.911610 GTGTGAGGATTTTCATTGTTCGTG 59.088 41.667 0.00 0.00 0.00 4.35
1855 1894 4.819088 TGTGAGGATTTTCATTGTTCGTGA 59.181 37.500 0.00 0.00 0.00 4.35
1858 1897 4.398319 AGGATTTTCATTGTTCGTGAGGT 58.602 39.130 0.00 0.00 0.00 3.85
1859 1898 4.216257 AGGATTTTCATTGTTCGTGAGGTG 59.784 41.667 0.00 0.00 0.00 4.00
1861 1900 5.180492 GGATTTTCATTGTTCGTGAGGTGTA 59.820 40.000 0.00 0.00 0.00 2.90
1877 1916 7.407337 GTGAGGTGTAAAACTGAACTGTTTAG 58.593 38.462 10.41 10.41 38.98 1.85
1879 1918 7.279313 TGAGGTGTAAAACTGAACTGTTTAGTC 59.721 37.037 16.90 6.67 38.98 2.59
1880 1919 7.107542 AGGTGTAAAACTGAACTGTTTAGTCA 58.892 34.615 16.90 8.91 38.98 3.41
1884 1923 9.656040 TGTAAAACTGAACTGTTTAGTCAACTA 57.344 29.630 16.90 5.43 38.98 2.24
1888 1927 8.594881 AACTGAACTGTTTAGTCAACTATCAG 57.405 34.615 16.90 7.19 41.20 2.90
1890 1929 6.521162 TGAACTGTTTAGTCAACTATCAGCA 58.479 36.000 16.04 9.08 35.69 4.41
1895 1934 9.502091 ACTGTTTAGTCAACTATCAGCATAAAA 57.498 29.630 16.04 0.00 35.85 1.52
1925 1964 8.622948 AATTGTCTCTTGGTTTTTAGTAGGAG 57.377 34.615 0.00 0.00 0.00 3.69
1931 1970 5.938125 TCTTGGTTTTTAGTAGGAGTGCATC 59.062 40.000 0.00 0.00 0.00 3.91
1944 1983 5.659048 GGAGTGCATCCGAGTAAATTTAG 57.341 43.478 0.00 0.00 38.67 1.85
1950 1989 7.390718 AGTGCATCCGAGTAAATTTAGAAAACT 59.609 33.333 0.00 0.00 0.00 2.66
1953 1992 7.484959 GCATCCGAGTAAATTTAGAAAACTTGG 59.515 37.037 14.58 14.58 41.35 3.61
1957 1996 8.947115 CCGAGTAAATTTAGAAAACTTGGAGAT 58.053 33.333 15.28 0.00 42.20 2.75
1978 2017 7.826744 GGAGATTTAAGATTTCAGAGTTCAGGT 59.173 37.037 0.00 0.00 0.00 4.00
1979 2018 9.225436 GAGATTTAAGATTTCAGAGTTCAGGTT 57.775 33.333 0.00 0.00 0.00 3.50
1980 2019 9.007901 AGATTTAAGATTTCAGAGTTCAGGTTG 57.992 33.333 0.00 0.00 0.00 3.77
1981 2020 7.510549 TTTAAGATTTCAGAGTTCAGGTTGG 57.489 36.000 0.00 0.00 0.00 3.77
1985 2024 1.672356 CAGAGTTCAGGTTGGGCCG 60.672 63.158 0.00 0.00 43.70 6.13
1987 2026 1.376037 GAGTTCAGGTTGGGCCGAG 60.376 63.158 0.00 0.00 43.70 4.63
1993 2032 4.778143 GGTTGGGCCGAGCGTGAT 62.778 66.667 7.31 0.00 0.00 3.06
1996 2035 3.247056 TTGGGCCGAGCGTGATGAA 62.247 57.895 0.00 0.00 0.00 2.57
1999 2038 1.741770 GGCCGAGCGTGATGAAACT 60.742 57.895 0.00 0.00 0.00 2.66
2002 2041 1.428448 CCGAGCGTGATGAAACTCAA 58.572 50.000 0.00 0.00 0.00 3.02
2005 2044 3.616821 CCGAGCGTGATGAAACTCAAATA 59.383 43.478 0.00 0.00 0.00 1.40
2006 2045 4.092821 CCGAGCGTGATGAAACTCAAATAA 59.907 41.667 0.00 0.00 0.00 1.40
2010 2049 6.913170 AGCGTGATGAAACTCAAATAATTGT 58.087 32.000 0.00 0.00 37.79 2.71
2020 2059 8.579682 AAACTCAAATAATTGTTTCAGTGAGC 57.420 30.769 5.03 0.00 37.79 4.26
2023 2062 7.048629 TCAAATAATTGTTTCAGTGAGCCAA 57.951 32.000 8.46 8.46 37.79 4.52
2065 2104 2.396700 GACATGTGGCGATCATGCA 58.603 52.632 1.15 0.00 44.26 3.96
2066 2105 0.734309 GACATGTGGCGATCATGCAA 59.266 50.000 1.15 0.00 44.26 4.08
2070 2109 0.606130 TGTGGCGATCATGCAAGTGT 60.606 50.000 0.00 0.00 36.28 3.55
2075 2114 0.522626 CGATCATGCAAGTGTTGGCA 59.477 50.000 0.00 0.00 45.23 4.92
2088 2127 0.248866 GTTGGCACACTTTTGGTCCG 60.249 55.000 0.00 0.00 39.29 4.79
2089 2128 0.394488 TTGGCACACTTTTGGTCCGA 60.394 50.000 0.00 0.00 39.29 4.55
2092 2131 1.444119 GCACACTTTTGGTCCGAGCA 61.444 55.000 0.00 0.00 0.00 4.26
2094 2133 1.197721 CACACTTTTGGTCCGAGCATC 59.802 52.381 0.14 0.00 0.00 3.91
2122 2161 0.653636 GCGTGTCGTGGAGTTCAAAA 59.346 50.000 0.00 0.00 0.00 2.44
2146 2185 8.922058 AATTTGAATGAAGCTAGTTAATGCAG 57.078 30.769 0.00 0.00 0.00 4.41
2149 2188 7.076842 TGAATGAAGCTAGTTAATGCAGAAC 57.923 36.000 6.22 6.22 0.00 3.01
2153 2192 6.230472 TGAAGCTAGTTAATGCAGAACTTGA 58.770 36.000 21.65 7.77 38.16 3.02
2154 2193 6.881065 TGAAGCTAGTTAATGCAGAACTTGAT 59.119 34.615 21.65 15.97 38.16 2.57
2162 2201 1.908619 TGCAGAACTTGATAGCCCTGA 59.091 47.619 0.00 0.00 0.00 3.86
2168 2207 4.657969 AGAACTTGATAGCCCTGAATAGCT 59.342 41.667 0.00 0.00 43.20 3.32
2172 2211 4.891992 TGATAGCCCTGAATAGCTTACC 57.108 45.455 0.00 0.00 40.56 2.85
2174 2213 4.658435 TGATAGCCCTGAATAGCTTACCAA 59.342 41.667 0.00 0.00 40.56 3.67
2193 2232 8.905660 TTACCAAGCAGTACAACAGTATAAAA 57.094 30.769 0.00 0.00 0.00 1.52
2195 2234 6.430000 ACCAAGCAGTACAACAGTATAAAAGG 59.570 38.462 0.00 0.00 0.00 3.11
2196 2235 6.653320 CCAAGCAGTACAACAGTATAAAAGGA 59.347 38.462 0.00 0.00 0.00 3.36
2199 2238 7.852263 AGCAGTACAACAGTATAAAAGGAGAT 58.148 34.615 0.00 0.00 0.00 2.75
2201 2240 7.466050 GCAGTACAACAGTATAAAAGGAGATGC 60.466 40.741 0.00 0.00 0.00 3.91
2202 2241 7.011482 CAGTACAACAGTATAAAAGGAGATGCC 59.989 40.741 0.00 0.00 0.00 4.40
2224 2263 1.153349 GCAGCTACCTGGCCTGTAC 60.153 63.158 3.32 1.51 39.54 2.90
2230 2269 0.907704 TACCTGGCCTGTACCCACTG 60.908 60.000 3.32 0.00 0.00 3.66
2238 2277 2.290323 GCCTGTACCCACTGTCTCAAAT 60.290 50.000 0.00 0.00 0.00 2.32
2239 2278 3.055385 GCCTGTACCCACTGTCTCAAATA 60.055 47.826 0.00 0.00 0.00 1.40
2243 2282 5.547465 TGTACCCACTGTCTCAAATAGTTG 58.453 41.667 0.00 0.00 35.95 3.16
2245 2284 5.304686 ACCCACTGTCTCAAATAGTTGAA 57.695 39.130 7.08 0.00 43.18 2.69
2249 2288 5.991606 CCACTGTCTCAAATAGTTGAACTCA 59.008 40.000 0.00 5.80 43.18 3.41
2254 2293 9.814899 CTGTCTCAAATAGTTGAACTCATAGAT 57.185 33.333 0.00 0.00 43.18 1.98
2259 2298 8.762645 TCAAATAGTTGAACTCATAGATCTGGT 58.237 33.333 5.18 0.00 40.87 4.00
2262 2301 3.827008 TGAACTCATAGATCTGGTGCC 57.173 47.619 5.18 0.00 0.00 5.01
2264 2303 3.133542 TGAACTCATAGATCTGGTGCCTG 59.866 47.826 5.18 1.71 0.00 4.85
2289 2328 3.091545 GGATTGAAGAGATGGCACCAAA 58.908 45.455 0.00 0.00 0.00 3.28
2295 2334 1.228245 AGATGGCACCAAACGCTGT 60.228 52.632 0.00 0.00 0.00 4.40
2304 2343 1.370900 CAAACGCTGTTGAGCCTGC 60.371 57.895 0.00 0.00 42.91 4.85
2306 2345 1.789078 AAACGCTGTTGAGCCTGCAG 61.789 55.000 6.78 6.78 42.91 4.41
2308 2347 2.033141 GCTGTTGAGCCTGCAGGA 59.967 61.111 37.21 13.40 39.57 3.86
2319 2358 1.220206 CTGCAGGAAGTGGCTCGAT 59.780 57.895 5.57 0.00 0.00 3.59
2321 2360 1.817099 GCAGGAAGTGGCTCGATGG 60.817 63.158 0.00 0.00 0.00 3.51
2326 2365 1.306141 AAGTGGCTCGATGGGGAGA 60.306 57.895 0.00 0.00 36.08 3.71
2330 2369 1.117749 TGGCTCGATGGGGAGATCTG 61.118 60.000 0.00 0.00 36.08 2.90
2350 2389 3.565307 TGAATTGAGTGGTTCAGCCTTT 58.435 40.909 0.00 0.00 37.07 3.11
2354 2393 0.954452 GAGTGGTTCAGCCTTTGGTG 59.046 55.000 0.00 0.00 41.39 4.17
2357 2396 1.067060 GTGGTTCAGCCTTTGGTGTTC 59.933 52.381 0.00 0.00 40.84 3.18
2370 2409 2.054021 TGGTGTTCAGGATCAGGTTCA 58.946 47.619 0.00 0.00 0.00 3.18
2371 2410 2.644299 TGGTGTTCAGGATCAGGTTCAT 59.356 45.455 0.00 0.00 0.00 2.57
2386 2425 5.835819 TCAGGTTCATCTATCCTCCTTGTAG 59.164 44.000 0.00 0.00 0.00 2.74
2390 2429 7.016072 AGGTTCATCTATCCTCCTTGTAGATTG 59.984 40.741 0.00 0.00 33.97 2.67
2393 2432 8.733092 TCATCTATCCTCCTTGTAGATTGAAT 57.267 34.615 0.00 0.00 33.97 2.57
2403 2442 9.170734 CTCCTTGTAGATTGAATTTCTGAATCA 57.829 33.333 10.42 0.00 0.00 2.57
2405 2444 9.731819 CCTTGTAGATTGAATTTCTGAATCATG 57.268 33.333 10.42 0.00 0.00 3.07
2406 2445 9.731819 CTTGTAGATTGAATTTCTGAATCATGG 57.268 33.333 10.42 0.00 0.00 3.66
2410 2449 6.550108 AGATTGAATTTCTGAATCATGGGGAG 59.450 38.462 10.42 0.00 0.00 4.30
2415 2454 1.839994 TCTGAATCATGGGGAGGTGTC 59.160 52.381 0.00 0.00 0.00 3.67
2430 2469 5.501156 GGAGGTGTCCTTGTTTCTTATGAT 58.499 41.667 0.00 0.00 40.17 2.45
2431 2470 6.352737 GGGAGGTGTCCTTGTTTCTTATGATA 60.353 42.308 0.00 0.00 43.36 2.15
2433 2472 7.775561 GGAGGTGTCCTTGTTTCTTATGATATT 59.224 37.037 0.00 0.00 40.17 1.28
2434 2473 8.511604 AGGTGTCCTTGTTTCTTATGATATTG 57.488 34.615 0.00 0.00 0.00 1.90
2450 2489 6.040209 TGATATTGATTTTGCAGGCAAAGT 57.960 33.333 17.70 15.65 45.15 2.66
2456 2495 2.071778 TTTGCAGGCAAAGTCCTCTT 57.928 45.000 14.92 0.00 40.51 2.85
2458 2497 0.473755 TGCAGGCAAAGTCCTCTTCA 59.526 50.000 0.00 0.00 33.25 3.02
2461 2500 2.560105 GCAGGCAAAGTCCTCTTCATTT 59.440 45.455 0.00 0.00 33.25 2.32
2465 2504 3.319122 GGCAAAGTCCTCTTCATTTGTGT 59.681 43.478 0.00 0.00 35.55 3.72
2467 2506 4.776743 CAAAGTCCTCTTCATTTGTGTCG 58.223 43.478 0.00 0.00 32.90 4.35
2475 2514 1.154413 CATTTGTGTCGTCAGCGGC 60.154 57.895 0.00 0.00 43.99 6.53
2491 2530 1.805945 GGCGAGTTGCTGGAGTACG 60.806 63.158 1.51 0.00 45.43 3.67
2501 2540 2.560981 TGCTGGAGTACGACTGATTTGA 59.439 45.455 0.00 0.00 0.00 2.69
2502 2541 3.006430 TGCTGGAGTACGACTGATTTGAA 59.994 43.478 0.00 0.00 0.00 2.69
2509 2548 2.632377 ACGACTGATTTGAATCCGCAT 58.368 42.857 0.00 0.00 34.50 4.73
2511 2550 2.609002 CGACTGATTTGAATCCGCATGA 59.391 45.455 0.00 0.00 34.50 3.07
2514 2553 3.317149 ACTGATTTGAATCCGCATGATGG 59.683 43.478 0.00 0.00 34.50 3.51
2515 2554 2.034939 TGATTTGAATCCGCATGATGGC 59.965 45.455 0.00 0.00 34.50 4.40
2524 2563 3.839654 GCATGATGGCGATGTTCTG 57.160 52.632 0.00 0.00 0.00 3.02
2525 2564 0.317603 GCATGATGGCGATGTTCTGC 60.318 55.000 0.00 0.00 0.00 4.26
2526 2565 0.041576 CATGATGGCGATGTTCTGCG 60.042 55.000 0.00 0.00 0.00 5.18
2527 2566 0.462581 ATGATGGCGATGTTCTGCGT 60.463 50.000 0.00 0.00 0.00 5.24
2537 2576 0.249447 TGTTCTGCGTGAGGTGAGTG 60.249 55.000 0.00 0.00 0.00 3.51
2539 2578 1.748329 TTCTGCGTGAGGTGAGTGCT 61.748 55.000 0.00 0.00 0.00 4.40
2543 2582 0.880278 GCGTGAGGTGAGTGCTGAAA 60.880 55.000 0.00 0.00 0.00 2.69
2545 2584 1.462283 CGTGAGGTGAGTGCTGAAATG 59.538 52.381 0.00 0.00 0.00 2.32
2546 2585 1.808945 GTGAGGTGAGTGCTGAAATGG 59.191 52.381 0.00 0.00 0.00 3.16
2550 2589 3.760684 GAGGTGAGTGCTGAAATGGAATT 59.239 43.478 0.00 0.00 38.98 2.17
2604 2644 8.629986 CACAAATTTCTGAACATATGAAACGAC 58.370 33.333 10.38 0.00 33.36 4.34
2619 2659 2.185004 ACGACTTTCATGGGGAAGTG 57.815 50.000 12.61 8.80 36.72 3.16
2636 2676 2.417719 AGTGGTTCAAGCAGATCGTTC 58.582 47.619 0.00 0.00 0.00 3.95
2640 2680 2.066262 GTTCAAGCAGATCGTTCGGAA 58.934 47.619 0.00 0.00 0.00 4.30
2641 2681 1.710013 TCAAGCAGATCGTTCGGAAC 58.290 50.000 10.83 10.83 0.00 3.62
2642 2682 1.000394 TCAAGCAGATCGTTCGGAACA 60.000 47.619 19.91 8.29 0.00 3.18
2643 2683 1.798223 CAAGCAGATCGTTCGGAACAA 59.202 47.619 19.91 2.49 0.00 2.83
2647 2687 2.474526 GCAGATCGTTCGGAACAATGTG 60.475 50.000 19.91 16.29 0.00 3.21
2651 2691 0.306228 CGTTCGGAACAATGTGTGCA 59.694 50.000 19.91 0.00 0.00 4.57
2652 2692 1.268285 CGTTCGGAACAATGTGTGCAA 60.268 47.619 19.91 0.00 0.00 4.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.105567 TCATATTGCGAGGGTTAAGGAAA 57.894 39.130 0.00 0.00 0.00 3.13
3 4 4.764050 TTCATATTGCGAGGGTTAAGGA 57.236 40.909 0.00 0.00 0.00 3.36
4 5 5.828299 TTTTCATATTGCGAGGGTTAAGG 57.172 39.130 0.00 0.00 0.00 2.69
5 6 5.687285 GCATTTTCATATTGCGAGGGTTAAG 59.313 40.000 0.00 0.00 0.00 1.85
6 7 5.126222 TGCATTTTCATATTGCGAGGGTTAA 59.874 36.000 0.00 0.00 39.23 2.01
7 8 4.642437 TGCATTTTCATATTGCGAGGGTTA 59.358 37.500 0.00 0.00 39.23 2.85
8 9 3.446873 TGCATTTTCATATTGCGAGGGTT 59.553 39.130 0.00 0.00 39.23 4.11
9 10 3.023119 TGCATTTTCATATTGCGAGGGT 58.977 40.909 0.00 0.00 39.23 4.34
10 11 3.713858 TGCATTTTCATATTGCGAGGG 57.286 42.857 0.00 0.00 39.23 4.30
17 18 7.728148 TGGCTGACAATATGCATTTTCATATT 58.272 30.769 3.54 0.00 45.48 1.28
18 19 7.292713 TGGCTGACAATATGCATTTTCATAT 57.707 32.000 3.54 0.00 40.35 1.78
19 20 6.712179 TGGCTGACAATATGCATTTTCATA 57.288 33.333 3.54 0.00 31.99 2.15
20 21 5.601583 TGGCTGACAATATGCATTTTCAT 57.398 34.783 3.54 0.00 31.99 2.57
21 22 5.127356 TCATGGCTGACAATATGCATTTTCA 59.873 36.000 3.54 1.83 31.62 2.69
22 23 5.593968 TCATGGCTGACAATATGCATTTTC 58.406 37.500 3.54 0.00 0.00 2.29
23 24 5.601583 TCATGGCTGACAATATGCATTTT 57.398 34.783 3.54 0.00 0.00 1.82
36 37 6.501805 ACATATTAGGATTAGGTCATGGCTGA 59.498 38.462 0.00 0.00 0.00 4.26
37 38 6.715280 ACATATTAGGATTAGGTCATGGCTG 58.285 40.000 0.00 0.00 0.00 4.85
38 39 6.959606 ACATATTAGGATTAGGTCATGGCT 57.040 37.500 0.00 0.00 0.00 4.75
39 40 9.113838 CATAACATATTAGGATTAGGTCATGGC 57.886 37.037 0.00 0.00 0.00 4.40
70 71 6.154021 AGCTCTGCACTGATTTGGAAATAATT 59.846 34.615 0.00 0.00 0.00 1.40
74 75 3.428532 AGCTCTGCACTGATTTGGAAAT 58.571 40.909 0.00 0.00 0.00 2.17
75 76 2.867624 AGCTCTGCACTGATTTGGAAA 58.132 42.857 0.00 0.00 0.00 3.13
78 79 3.538591 TCATAGCTCTGCACTGATTTGG 58.461 45.455 0.00 0.00 0.00 3.28
81 82 4.841422 AGTTTCATAGCTCTGCACTGATT 58.159 39.130 0.00 0.00 0.00 2.57
99 100 6.151144 GGATACACCTTGTTGATTGCTAGTTT 59.849 38.462 0.00 0.00 35.41 2.66
113 114 5.977635 TGAACTGTATCTGGATACACCTTG 58.022 41.667 16.55 11.00 46.11 3.61
131 132 2.553028 CCACTTGCACCACCTATGAACT 60.553 50.000 0.00 0.00 0.00 3.01
134 135 0.322456 GCCACTTGCACCACCTATGA 60.322 55.000 0.00 0.00 40.77 2.15
179 180 4.310022 TTTGGTGTATAAAGGACCCAGG 57.690 45.455 0.00 0.00 0.00 4.45
232 233 3.478857 TCGGTTAACATGTGGTTCACT 57.521 42.857 8.10 0.00 40.96 3.41
271 272 3.290948 TTATCCAGTAACATGCCCCAC 57.709 47.619 0.00 0.00 0.00 4.61
277 278 8.957028 CGCAAATTGTATTTATCCAGTAACATG 58.043 33.333 0.00 0.00 0.00 3.21
292 293 4.652421 TGCATGATTCCGCAAATTGTAT 57.348 36.364 0.00 0.00 34.59 2.29
310 311 7.274447 TCTCATAAATCTGTGTCATGTATGCA 58.726 34.615 0.00 0.00 0.00 3.96
316 317 7.474398 ACGAATCTCATAAATCTGTGTCATG 57.526 36.000 0.00 0.00 0.00 3.07
340 341 9.434420 CTGAAATATGATTTTGCCCACTTTTTA 57.566 29.630 0.00 0.00 0.00 1.52
342 343 7.678837 TCTGAAATATGATTTTGCCCACTTTT 58.321 30.769 0.00 0.00 0.00 2.27
356 357 6.072508 GCACAGAAAACACCTCTGAAATATGA 60.073 38.462 6.83 0.00 42.51 2.15
361 362 2.687935 GGCACAGAAAACACCTCTGAAA 59.312 45.455 6.83 0.00 42.51 2.69
364 365 1.679139 TGGCACAGAAAACACCTCTG 58.321 50.000 0.00 0.00 44.90 3.35
397 398 2.543687 TAGCACTCTCGCTCCGTTGC 62.544 60.000 0.00 0.00 42.62 4.17
427 428 1.683943 CTGGGGGCATGTACATCTTG 58.316 55.000 5.07 0.00 0.00 3.02
432 433 3.006133 TCGCTGGGGGCATGTACA 61.006 61.111 0.00 0.00 41.91 2.90
433 434 2.203070 CTCGCTGGGGGCATGTAC 60.203 66.667 0.00 0.00 41.91 2.90
470 471 2.654749 TGAAGTCTCATGTACTGCCG 57.345 50.000 4.58 0.00 0.00 5.69
478 479 2.604914 CCGGTCGAATTGAAGTCTCATG 59.395 50.000 0.00 0.00 0.00 3.07
487 488 2.183300 CGCTCCCGGTCGAATTGA 59.817 61.111 0.00 0.00 0.00 2.57
493 494 3.685214 CTCTTCACGCTCCCGGTCG 62.685 68.421 0.00 3.32 39.22 4.79
497 498 4.821589 GCCCTCTTCACGCTCCCG 62.822 72.222 0.00 0.00 41.14 5.14
512 513 3.596310 AGTTCTTTTCTCCTCGTAGCC 57.404 47.619 0.00 0.00 0.00 3.93
540 541 8.971321 CAATGAAAAAGGTAAACTGATGTCTTG 58.029 33.333 0.00 0.00 0.00 3.02
544 545 6.925165 CAGCAATGAAAAAGGTAAACTGATGT 59.075 34.615 0.00 0.00 0.00 3.06
547 548 6.460953 GGTCAGCAATGAAAAAGGTAAACTGA 60.461 38.462 0.00 0.00 0.00 3.41
549 550 5.221441 GGGTCAGCAATGAAAAAGGTAAACT 60.221 40.000 0.00 0.00 0.00 2.66
555 556 1.885887 TCGGGTCAGCAATGAAAAAGG 59.114 47.619 0.00 0.00 0.00 3.11
556 557 2.351738 GGTCGGGTCAGCAATGAAAAAG 60.352 50.000 0.00 0.00 0.00 2.27
575 576 5.523188 TCAAATGTTAGTTTTGACGTACGGT 59.477 36.000 21.06 5.07 37.97 4.83
577 578 6.869473 TCTCAAATGTTAGTTTTGACGTACG 58.131 36.000 15.01 15.01 37.97 3.67
578 579 9.103048 CATTCTCAAATGTTAGTTTTGACGTAC 57.897 33.333 0.00 0.00 37.97 3.67
579 580 9.047371 TCATTCTCAAATGTTAGTTTTGACGTA 57.953 29.630 0.00 0.00 42.46 3.57
604 605 9.180678 CCACAAAGTTGTACACAAAAGAATATC 57.819 33.333 0.00 0.00 39.91 1.63
607 608 5.810074 GCCACAAAGTTGTACACAAAAGAAT 59.190 36.000 0.00 0.00 39.91 2.40
609 610 4.218635 TGCCACAAAGTTGTACACAAAAGA 59.781 37.500 0.00 0.00 39.91 2.52
612 613 3.508012 AGTGCCACAAAGTTGTACACAAA 59.492 39.130 21.86 0.00 43.91 2.83
615 616 3.775661 AAGTGCCACAAAGTTGTACAC 57.224 42.857 16.20 16.20 42.81 2.90
632 633 0.396974 TGCACCTCCCTGCAAAAAGT 60.397 50.000 0.00 0.00 44.28 2.66
634 635 0.396974 ACTGCACCTCCCTGCAAAAA 60.397 50.000 0.00 0.00 46.46 1.94
654 655 6.721208 TCTCCATAGCCAAATTTGTTCTTCTT 59.279 34.615 16.73 1.13 0.00 2.52
675 676 2.561478 TTTTACTGGTGTGCCTCTCC 57.439 50.000 0.00 0.00 35.27 3.71
699 700 4.104086 ACTCCTCAAACATGGATCTGGTA 58.896 43.478 0.00 0.00 0.00 3.25
703 704 4.043310 TCCAAACTCCTCAAACATGGATCT 59.957 41.667 0.00 0.00 30.90 2.75
708 709 3.891366 ACCTTCCAAACTCCTCAAACATG 59.109 43.478 0.00 0.00 0.00 3.21
726 727 0.112995 TGGCTTCCATCAGCAACCTT 59.887 50.000 0.00 0.00 42.10 3.50
746 747 6.701340 TCTATCTCCGTTACGTTATAGGCTA 58.299 40.000 3.52 0.00 0.00 3.93
748 749 5.869753 TCTATCTCCGTTACGTTATAGGC 57.130 43.478 3.52 0.00 0.00 3.93
771 772 8.271458 TGGGTTGCTACATATTTCTTCATCTTA 58.729 33.333 0.00 0.00 0.00 2.10
783 784 5.048782 CGCATTATTGTGGGTTGCTACATAT 60.049 40.000 0.00 0.00 0.00 1.78
810 811 4.160252 ACTCTGCTCCATCTCTCTCTTTTC 59.840 45.833 0.00 0.00 0.00 2.29
813 814 3.386932 ACTCTGCTCCATCTCTCTCTT 57.613 47.619 0.00 0.00 0.00 2.85
849 856 4.767478 ACACCTTCTGATCATCACTGATG 58.233 43.478 12.25 12.25 42.27 3.07
853 860 4.217118 GCAAAACACCTTCTGATCATCACT 59.783 41.667 0.00 0.00 0.00 3.41
854 861 4.217118 AGCAAAACACCTTCTGATCATCAC 59.783 41.667 0.00 0.00 0.00 3.06
855 862 4.216902 CAGCAAAACACCTTCTGATCATCA 59.783 41.667 0.00 0.00 0.00 3.07
864 871 2.423538 ACACTCACAGCAAAACACCTTC 59.576 45.455 0.00 0.00 0.00 3.46
869 876 1.742831 GACCACACTCACAGCAAAACA 59.257 47.619 0.00 0.00 0.00 2.83
874 881 0.541392 AACTGACCACACTCACAGCA 59.459 50.000 0.00 0.00 34.25 4.41
875 882 1.331756 CAAACTGACCACACTCACAGC 59.668 52.381 0.00 0.00 34.25 4.40
876 883 2.905075 TCAAACTGACCACACTCACAG 58.095 47.619 0.00 0.00 36.58 3.66
891 898 2.923020 CAGCAAACCTGTGTGTTCAAAC 59.077 45.455 0.00 0.00 36.79 2.93
938 945 9.651913 AAGTCACAGAACAACATTTAACATTTT 57.348 25.926 0.00 0.00 0.00 1.82
948 955 7.759433 CCAAACTTTTAAGTCACAGAACAACAT 59.241 33.333 0.00 0.00 38.57 2.71
951 958 7.222000 ACCAAACTTTTAAGTCACAGAACAA 57.778 32.000 0.00 0.00 38.57 2.83
953 960 8.238631 TGTTACCAAACTTTTAAGTCACAGAAC 58.761 33.333 0.00 0.65 38.57 3.01
955 962 7.925043 TGTTACCAAACTTTTAAGTCACAGA 57.075 32.000 0.00 0.00 38.57 3.41
957 964 7.416890 CCCATGTTACCAAACTTTTAAGTCACA 60.417 37.037 0.00 0.00 38.57 3.58
961 968 7.343574 AGAACCCATGTTACCAAACTTTTAAGT 59.656 33.333 0.00 0.00 36.28 2.24
963 970 7.663043 AGAACCCATGTTACCAAACTTTTAA 57.337 32.000 0.00 0.00 36.51 1.52
967 974 7.849322 ATTTAGAACCCATGTTACCAAACTT 57.151 32.000 0.00 0.00 36.51 2.66
982 989 6.524101 TTCCATAACCTGCAATTTAGAACC 57.476 37.500 0.00 0.00 0.00 3.62
988 995 8.034804 GTGAAGTATTTCCATAACCTGCAATTT 58.965 33.333 0.00 0.00 32.09 1.82
989 996 7.363793 GGTGAAGTATTTCCATAACCTGCAATT 60.364 37.037 0.00 0.00 32.09 2.32
991 998 5.417580 GGTGAAGTATTTCCATAACCTGCAA 59.582 40.000 0.00 0.00 32.09 4.08
1017 1024 7.092264 ACAATATCTTTTTCTGGGATCTCCTCA 60.092 37.037 0.00 0.00 36.20 3.86
1020 1027 7.056635 TCACAATATCTTTTTCTGGGATCTCC 58.943 38.462 0.00 0.00 0.00 3.71
1026 1033 6.092748 CCGTTTCACAATATCTTTTTCTGGG 58.907 40.000 0.00 0.00 0.00 4.45
1031 1038 6.443792 GTCCACCGTTTCACAATATCTTTTT 58.556 36.000 0.00 0.00 0.00 1.94
1032 1039 5.334569 CGTCCACCGTTTCACAATATCTTTT 60.335 40.000 0.00 0.00 0.00 2.27
1036 1043 3.255725 TCGTCCACCGTTTCACAATATC 58.744 45.455 0.00 0.00 37.94 1.63
1080 1087 0.465705 GGTACTGCTGCAGATGGCTA 59.534 55.000 34.28 14.14 45.15 3.93
1110 1117 3.423749 TGTGAATGATGTGTTGCTCCAT 58.576 40.909 0.00 0.00 0.00 3.41
1111 1118 2.861274 TGTGAATGATGTGTTGCTCCA 58.139 42.857 0.00 0.00 0.00 3.86
1143 1150 5.865085 TCCATAGCTTTCAAGTACAGTGTT 58.135 37.500 0.00 0.00 0.00 3.32
1155 1162 2.029365 GCGAACGACTTCCATAGCTTTC 59.971 50.000 0.00 0.00 0.00 2.62
1167 1174 2.367202 ATCCCCCATGCGAACGACT 61.367 57.895 0.00 0.00 0.00 4.18
1190 1197 5.127194 AGCATGAAGTCAAATGATTCTGCAT 59.873 36.000 0.00 9.00 33.45 3.96
1217 1224 0.818445 CAGCAGATCATCCAGCCCAC 60.818 60.000 0.00 0.00 0.00 4.61
1262 1269 2.654385 TCAAAACCCATTCCATCCCTCT 59.346 45.455 0.00 0.00 0.00 3.69
1266 1273 3.100207 TCCTCAAAACCCATTCCATCC 57.900 47.619 0.00 0.00 0.00 3.51
1273 1280 2.301346 GATGCGATCCTCAAAACCCAT 58.699 47.619 0.00 0.00 0.00 4.00
1275 1282 1.401905 GTGATGCGATCCTCAAAACCC 59.598 52.381 0.00 0.00 0.00 4.11
1278 1285 2.378445 TCGTGATGCGATCCTCAAAA 57.622 45.000 0.00 0.00 45.68 2.44
1291 1298 1.208052 CAGAGGGTCCAATGTCGTGAT 59.792 52.381 0.00 0.00 0.00 3.06
1293 1300 0.608130 TCAGAGGGTCCAATGTCGTG 59.392 55.000 0.00 0.00 0.00 4.35
1299 1306 1.625818 GTGTGTCTCAGAGGGTCCAAT 59.374 52.381 0.00 0.00 0.00 3.16
1309 1316 5.394005 CCTCTCCATTTCTAGTGTGTCTCAG 60.394 48.000 0.00 0.00 0.00 3.35
1314 1321 4.804261 GCAACCTCTCCATTTCTAGTGTGT 60.804 45.833 0.00 0.00 0.00 3.72
1317 1324 4.213564 AGCAACCTCTCCATTTCTAGTG 57.786 45.455 0.00 0.00 0.00 2.74
1321 1328 3.077359 CGAAAGCAACCTCTCCATTTCT 58.923 45.455 0.00 0.00 0.00 2.52
1323 1330 2.554032 CACGAAAGCAACCTCTCCATTT 59.446 45.455 0.00 0.00 0.00 2.32
1350 1357 5.050702 GCTATTCTCTTTATCGGCAACTGTC 60.051 44.000 0.00 0.00 0.00 3.51
1355 1362 4.756642 CCATGCTATTCTCTTTATCGGCAA 59.243 41.667 0.00 0.00 32.28 4.52
1386 1393 0.166814 GCAAGTCATTCACGCTCACC 59.833 55.000 0.00 0.00 0.00 4.02
1389 1396 1.135859 CCTTGCAAGTCATTCACGCTC 60.136 52.381 24.35 0.00 0.00 5.03
1395 1402 1.403323 GCTAGCCCTTGCAAGTCATTC 59.597 52.381 24.35 8.74 41.13 2.67
1416 1423 1.377229 CCTTTGCTTACCGGGTGGA 59.623 57.895 10.66 0.00 39.21 4.02
1417 1424 1.677633 CCCTTTGCTTACCGGGTGG 60.678 63.158 10.66 3.73 42.84 4.61
1440 1452 1.133025 CTGCTATTTGTTGGCCTTCCG 59.867 52.381 3.32 0.00 34.14 4.30
1443 1455 1.077005 TCCCTGCTATTTGTTGGCCTT 59.923 47.619 3.32 0.00 0.00 4.35
1477 1489 3.188048 CGTGTACGTCTACTCAGTCCTTT 59.812 47.826 0.00 0.00 34.11 3.11
1485 1497 2.771689 CAGAAGCGTGTACGTCTACTC 58.228 52.381 6.27 0.00 42.22 2.59
1489 1501 0.387367 CTGCAGAAGCGTGTACGTCT 60.387 55.000 8.42 0.00 46.23 4.18
1547 1559 0.758734 CGGTGCATCCCCTCTATCAA 59.241 55.000 0.00 0.00 0.00 2.57
1560 1572 2.258013 CCTCGGCTTTTTCGGTGCA 61.258 57.895 0.00 0.00 0.00 4.57
1589 1601 3.857052 TCGATTCCGTAGTTCTTGCATT 58.143 40.909 0.00 0.00 37.05 3.56
1601 1613 1.214589 CGGTGACCTTCGATTCCGT 59.785 57.895 0.00 0.00 37.05 4.69
1623 1635 0.036388 ATGGCCTAGTCCACGTGTTG 60.036 55.000 15.65 0.00 39.25 3.33
1650 1662 3.271729 TGTCGAAAACTAGTTTGCACCA 58.728 40.909 23.32 16.21 32.36 4.17
1652 1664 5.507077 TGAATGTCGAAAACTAGTTTGCAC 58.493 37.500 23.32 19.26 32.36 4.57
1693 1719 4.092383 GTCGCAAAGCCTAGTAAATCGAAA 59.908 41.667 0.00 0.00 0.00 3.46
1696 1722 2.927477 TGTCGCAAAGCCTAGTAAATCG 59.073 45.455 0.00 0.00 0.00 3.34
1698 1724 2.678336 GCTGTCGCAAAGCCTAGTAAAT 59.322 45.455 0.00 0.00 34.45 1.40
1700 1726 1.722011 GCTGTCGCAAAGCCTAGTAA 58.278 50.000 0.00 0.00 34.45 2.24
1710 1736 1.672030 CTGACCATGGCTGTCGCAA 60.672 57.895 13.04 0.00 38.10 4.85
1714 1740 0.607489 AAGTGCTGACCATGGCTGTC 60.607 55.000 13.04 2.27 0.00 3.51
1717 1743 1.975407 GCAAGTGCTGACCATGGCT 60.975 57.895 13.04 0.00 38.21 4.75
1718 1744 1.601419 ATGCAAGTGCTGACCATGGC 61.601 55.000 13.04 5.35 42.66 4.40
1719 1745 0.172578 CATGCAAGTGCTGACCATGG 59.827 55.000 11.19 11.19 42.66 3.66
1724 1750 2.397549 GAAAACCATGCAAGTGCTGAC 58.602 47.619 4.69 0.00 42.66 3.51
1726 1752 1.269206 ACGAAAACCATGCAAGTGCTG 60.269 47.619 4.69 0.86 42.66 4.41
1728 1754 2.031157 ACTACGAAAACCATGCAAGTGC 60.031 45.455 0.00 0.00 42.50 4.40
1734 1763 2.697431 TGCAACTACGAAAACCATGC 57.303 45.000 0.00 0.00 0.00 4.06
1741 1770 4.560136 TTTTCTGCATGCAACTACGAAA 57.440 36.364 22.88 22.04 0.00 3.46
1745 1774 7.756722 ACATTATCTTTTTCTGCATGCAACTAC 59.243 33.333 22.88 0.00 0.00 2.73
1767 1797 3.181467 GGATGCTCAGCTGAGACTACATT 60.181 47.826 41.20 20.47 44.74 2.71
1775 1805 0.107606 AGCTTGGATGCTCAGCTGAG 60.108 55.000 34.82 34.82 44.75 3.35
1791 1830 5.975988 TCTTATTACATTGGGGAAGAGCT 57.024 39.130 0.00 0.00 0.00 4.09
1797 1836 9.461312 GCACATTATATCTTATTACATTGGGGA 57.539 33.333 0.00 0.00 0.00 4.81
1798 1837 9.466497 AGCACATTATATCTTATTACATTGGGG 57.534 33.333 0.00 0.00 0.00 4.96
1808 1847 8.159447 ACACACATCCAGCACATTATATCTTAT 58.841 33.333 0.00 0.00 0.00 1.73
1816 1855 3.337358 CTCACACACATCCAGCACATTA 58.663 45.455 0.00 0.00 0.00 1.90
1828 1867 5.505489 CGAACAATGAAAATCCTCACACACA 60.505 40.000 0.00 0.00 0.00 3.72
1829 1868 4.911610 CGAACAATGAAAATCCTCACACAC 59.088 41.667 0.00 0.00 0.00 3.82
1845 1884 5.120399 TCAGTTTTACACCTCACGAACAAT 58.880 37.500 0.00 0.00 0.00 2.71
1847 1886 4.126208 TCAGTTTTACACCTCACGAACA 57.874 40.909 0.00 0.00 0.00 3.18
1848 1887 4.569564 AGTTCAGTTTTACACCTCACGAAC 59.430 41.667 0.00 0.00 0.00 3.95
1854 1893 7.279313 TGACTAAACAGTTCAGTTTTACACCTC 59.721 37.037 0.00 0.00 41.58 3.85
1855 1894 7.107542 TGACTAAACAGTTCAGTTTTACACCT 58.892 34.615 0.00 0.00 41.58 4.00
1858 1897 8.556213 AGTTGACTAAACAGTTCAGTTTTACA 57.444 30.769 0.00 0.00 41.58 2.41
1861 1900 9.391006 TGATAGTTGACTAAACAGTTCAGTTTT 57.609 29.630 0.00 0.00 41.58 2.43
1884 1923 9.768662 AAGAGACAATTTTGTTTTTATGCTGAT 57.231 25.926 0.00 0.00 42.43 2.90
1888 1927 8.141835 ACCAAGAGACAATTTTGTTTTTATGC 57.858 30.769 0.00 0.00 42.43 3.14
1900 1939 8.218488 ACTCCTACTAAAAACCAAGAGACAATT 58.782 33.333 0.00 0.00 0.00 2.32
1906 1945 5.305585 TGCACTCCTACTAAAAACCAAGAG 58.694 41.667 0.00 0.00 0.00 2.85
1922 1961 5.357257 TCTAAATTTACTCGGATGCACTCC 58.643 41.667 0.00 0.00 41.07 3.85
1925 1964 7.527457 AGTTTTCTAAATTTACTCGGATGCAC 58.473 34.615 0.00 0.00 0.00 4.57
1931 1970 8.319143 TCTCCAAGTTTTCTAAATTTACTCGG 57.681 34.615 0.00 0.00 0.00 4.63
1950 1989 9.224267 CTGAACTCTGAAATCTTAAATCTCCAA 57.776 33.333 0.00 0.00 0.00 3.53
1953 1992 8.785329 ACCTGAACTCTGAAATCTTAAATCTC 57.215 34.615 0.00 0.00 0.00 2.75
1957 1996 6.490040 CCCAACCTGAACTCTGAAATCTTAAA 59.510 38.462 0.00 0.00 0.00 1.52
1959 1998 5.560724 CCCAACCTGAACTCTGAAATCTTA 58.439 41.667 0.00 0.00 0.00 2.10
1960 1999 4.401925 CCCAACCTGAACTCTGAAATCTT 58.598 43.478 0.00 0.00 0.00 2.40
1965 2004 0.110486 GGCCCAACCTGAACTCTGAA 59.890 55.000 0.00 0.00 34.51 3.02
1967 2006 1.672356 CGGCCCAACCTGAACTCTG 60.672 63.158 0.00 0.00 35.61 3.35
1968 2007 1.831652 CTCGGCCCAACCTGAACTCT 61.832 60.000 0.00 0.00 35.61 3.24
1971 2010 3.056328 GCTCGGCCCAACCTGAAC 61.056 66.667 0.00 0.00 35.61 3.18
1978 2017 2.739849 TTTCATCACGCTCGGCCCAA 62.740 55.000 0.00 0.00 0.00 4.12
1979 2018 3.247056 TTTCATCACGCTCGGCCCA 62.247 57.895 0.00 0.00 0.00 5.36
1980 2019 2.435938 TTTCATCACGCTCGGCCC 60.436 61.111 0.00 0.00 0.00 5.80
1981 2020 1.696832 GAGTTTCATCACGCTCGGCC 61.697 60.000 0.00 0.00 0.00 6.13
1985 2024 7.023575 ACAATTATTTGAGTTTCATCACGCTC 58.976 34.615 4.42 0.00 36.64 5.03
1987 2026 7.566858 AACAATTATTTGAGTTTCATCACGC 57.433 32.000 4.42 0.00 36.64 5.34
1996 2035 7.147976 GGCTCACTGAAACAATTATTTGAGTT 58.852 34.615 0.00 0.00 34.31 3.01
1999 2038 6.647334 TGGCTCACTGAAACAATTATTTGA 57.353 33.333 4.42 0.00 36.64 2.69
2002 2041 5.870978 GCATTGGCTCACTGAAACAATTATT 59.129 36.000 5.52 0.00 36.96 1.40
2005 2044 3.656559 GCATTGGCTCACTGAAACAATT 58.343 40.909 5.52 0.00 36.96 2.32
2006 2045 3.308438 GCATTGGCTCACTGAAACAAT 57.692 42.857 3.24 3.24 36.96 2.71
2019 2058 5.353678 GGATATGAGTTCAGATAGCATTGGC 59.646 44.000 0.00 0.00 41.61 4.52
2020 2059 5.579904 CGGATATGAGTTCAGATAGCATTGG 59.420 44.000 0.00 0.00 0.00 3.16
2023 2062 4.382470 GCCGGATATGAGTTCAGATAGCAT 60.382 45.833 5.05 0.00 0.00 3.79
2030 2069 1.067060 TGTCGCCGGATATGAGTTCAG 59.933 52.381 5.05 0.00 0.00 3.02
2031 2070 1.107945 TGTCGCCGGATATGAGTTCA 58.892 50.000 5.05 0.00 0.00 3.18
2070 2109 0.394488 TCGGACCAAAAGTGTGCCAA 60.394 50.000 0.00 0.00 0.00 4.52
2075 2114 1.072331 AGATGCTCGGACCAAAAGTGT 59.928 47.619 0.00 0.00 0.00 3.55
2078 2117 1.089920 CCAGATGCTCGGACCAAAAG 58.910 55.000 0.00 0.00 0.00 2.27
2082 2121 2.725312 GCTCCAGATGCTCGGACCA 61.725 63.158 0.00 0.00 0.00 4.02
2083 2122 2.107953 GCTCCAGATGCTCGGACC 59.892 66.667 0.00 0.00 0.00 4.46
2084 2123 2.279120 CGCTCCAGATGCTCGGAC 60.279 66.667 0.00 0.00 0.00 4.79
2106 2145 5.568685 TTCAAATTTTGAACTCCACGACA 57.431 34.783 18.29 0.00 44.21 4.35
2122 2161 8.284945 TCTGCATTAACTAGCTTCATTCAAAT 57.715 30.769 0.00 0.00 0.00 2.32
2129 2168 6.230472 TCAAGTTCTGCATTAACTAGCTTCA 58.770 36.000 13.30 0.00 36.17 3.02
2130 2169 6.727824 TCAAGTTCTGCATTAACTAGCTTC 57.272 37.500 13.30 0.00 36.17 3.86
2139 2178 4.164030 TCAGGGCTATCAAGTTCTGCATTA 59.836 41.667 0.00 0.00 0.00 1.90
2146 2185 4.967036 AGCTATTCAGGGCTATCAAGTTC 58.033 43.478 0.00 0.00 37.00 3.01
2149 2188 5.221722 TGGTAAGCTATTCAGGGCTATCAAG 60.222 44.000 0.00 0.00 37.87 3.02
2153 2192 5.234466 CTTGGTAAGCTATTCAGGGCTAT 57.766 43.478 0.00 0.00 37.87 2.97
2154 2193 4.689612 CTTGGTAAGCTATTCAGGGCTA 57.310 45.455 0.00 0.00 37.87 3.93
2168 2207 8.905660 TTTTATACTGTTGTACTGCTTGGTAA 57.094 30.769 0.00 0.00 0.00 2.85
2172 2211 7.602644 TCTCCTTTTATACTGTTGTACTGCTTG 59.397 37.037 0.00 0.00 0.00 4.01
2174 2213 7.241042 TCTCCTTTTATACTGTTGTACTGCT 57.759 36.000 0.00 0.00 0.00 4.24
2179 2218 6.046593 CGGCATCTCCTTTTATACTGTTGTA 58.953 40.000 0.00 0.00 0.00 2.41
2181 2220 4.273480 CCGGCATCTCCTTTTATACTGTTG 59.727 45.833 0.00 0.00 0.00 3.33
2182 2221 4.451900 CCGGCATCTCCTTTTATACTGTT 58.548 43.478 0.00 0.00 0.00 3.16
2183 2222 3.181454 CCCGGCATCTCCTTTTATACTGT 60.181 47.826 0.00 0.00 0.00 3.55
2212 2251 2.207189 AGTGGGTACAGGCCAGGT 59.793 61.111 5.01 5.22 0.00 4.00
2217 2256 0.685097 TTGAGACAGTGGGTACAGGC 59.315 55.000 0.00 0.00 0.00 4.85
2219 2258 5.407407 ACTATTTGAGACAGTGGGTACAG 57.593 43.478 0.00 0.00 0.00 2.74
2220 2259 5.305902 TCAACTATTTGAGACAGTGGGTACA 59.694 40.000 0.00 0.00 36.79 2.90
2224 2263 5.308825 AGTTCAACTATTTGAGACAGTGGG 58.691 41.667 0.00 0.00 42.79 4.61
2238 2277 5.163405 GGCACCAGATCTATGAGTTCAACTA 60.163 44.000 9.78 0.00 0.00 2.24
2239 2278 4.383552 GGCACCAGATCTATGAGTTCAACT 60.384 45.833 9.78 0.00 0.00 3.16
2243 2282 3.494048 CCAGGCACCAGATCTATGAGTTC 60.494 52.174 9.78 0.00 0.00 3.01
2245 2284 2.045524 CCAGGCACCAGATCTATGAGT 58.954 52.381 9.78 0.00 0.00 3.41
2249 2288 2.053244 CCTTCCAGGCACCAGATCTAT 58.947 52.381 0.00 0.00 0.00 1.98
2254 2293 0.329261 CAATCCTTCCAGGCACCAGA 59.671 55.000 0.00 0.00 34.61 3.86
2256 2295 0.776810 TTCAATCCTTCCAGGCACCA 59.223 50.000 0.00 0.00 34.61 4.17
2259 2298 2.269023 TCTCTTCAATCCTTCCAGGCA 58.731 47.619 0.00 0.00 34.61 4.75
2262 2301 3.212685 GCCATCTCTTCAATCCTTCCAG 58.787 50.000 0.00 0.00 0.00 3.86
2264 2303 2.948315 GTGCCATCTCTTCAATCCTTCC 59.052 50.000 0.00 0.00 0.00 3.46
2273 2312 0.169009 GCGTTTGGTGCCATCTCTTC 59.831 55.000 0.00 0.00 0.00 2.87
2274 2313 0.250901 AGCGTTTGGTGCCATCTCTT 60.251 50.000 0.00 0.00 0.00 2.85
2275 2314 0.957395 CAGCGTTTGGTGCCATCTCT 60.957 55.000 0.00 0.00 36.70 3.10
2295 2334 1.073722 CCACTTCCTGCAGGCTCAA 59.926 57.895 28.91 16.20 34.44 3.02
2304 2343 1.153289 CCCATCGAGCCACTTCCTG 60.153 63.158 0.00 0.00 0.00 3.86
2306 2345 2.190578 CCCCATCGAGCCACTTCC 59.809 66.667 0.00 0.00 0.00 3.46
2308 2347 0.692419 ATCTCCCCATCGAGCCACTT 60.692 55.000 0.00 0.00 0.00 3.16
2315 2354 3.308401 TCAATTCAGATCTCCCCATCGA 58.692 45.455 0.00 0.00 0.00 3.59
2319 2358 2.507058 CCACTCAATTCAGATCTCCCCA 59.493 50.000 0.00 0.00 0.00 4.96
2321 2360 3.922171 ACCACTCAATTCAGATCTCCC 57.078 47.619 0.00 0.00 0.00 4.30
2330 2369 3.305608 CCAAAGGCTGAACCACTCAATTC 60.306 47.826 0.00 0.00 43.14 2.17
2350 2389 2.054021 TGAACCTGATCCTGAACACCA 58.946 47.619 0.00 0.00 0.00 4.17
2354 2393 5.306678 AGGATAGATGAACCTGATCCTGAAC 59.693 44.000 0.96 0.00 43.81 3.18
2357 2396 4.222588 GGAGGATAGATGAACCTGATCCTG 59.777 50.000 6.46 0.00 45.14 3.86
2371 2410 9.218525 AGAAATTCAATCTACAAGGAGGATAGA 57.781 33.333 0.00 0.00 0.00 1.98
2386 2425 6.239232 CCTCCCCATGATTCAGAAATTCAATC 60.239 42.308 0.00 0.00 0.00 2.67
2390 2429 4.340381 CACCTCCCCATGATTCAGAAATTC 59.660 45.833 0.00 0.00 0.00 2.17
2393 2432 2.649312 ACACCTCCCCATGATTCAGAAA 59.351 45.455 0.00 0.00 0.00 2.52
2403 2442 1.075536 GAAACAAGGACACCTCCCCAT 59.924 52.381 0.00 0.00 37.25 4.00
2405 2444 0.771755 AGAAACAAGGACACCTCCCC 59.228 55.000 0.00 0.00 37.25 4.81
2406 2445 2.658807 AAGAAACAAGGACACCTCCC 57.341 50.000 0.00 0.00 37.25 4.30
2410 2449 8.506168 TCAATATCATAAGAAACAAGGACACC 57.494 34.615 0.00 0.00 0.00 4.16
2430 2469 4.527816 AGGACTTTGCCTGCAAAATCAATA 59.472 37.500 22.58 0.17 41.97 1.90
2431 2470 3.325716 AGGACTTTGCCTGCAAAATCAAT 59.674 39.130 22.58 11.24 41.97 2.57
2433 2472 2.297033 GAGGACTTTGCCTGCAAAATCA 59.703 45.455 22.58 1.80 41.97 2.57
2434 2473 2.560105 AGAGGACTTTGCCTGCAAAATC 59.440 45.455 15.52 15.52 44.07 2.17
2440 2479 1.831580 ATGAAGAGGACTTTGCCTGC 58.168 50.000 0.00 0.00 38.73 4.85
2450 2489 3.653344 CTGACGACACAAATGAAGAGGA 58.347 45.455 0.00 0.00 0.00 3.71
2456 2495 1.565156 GCCGCTGACGACACAAATGA 61.565 55.000 0.00 0.00 43.93 2.57
2458 2497 2.667318 CGCCGCTGACGACACAAAT 61.667 57.895 0.00 0.00 43.93 2.32
2461 2500 4.700365 CTCGCCGCTGACGACACA 62.700 66.667 0.00 0.00 43.93 3.72
2475 2514 0.522180 AGTCGTACTCCAGCAACTCG 59.478 55.000 0.00 0.00 0.00 4.18
2476 2515 1.540267 TCAGTCGTACTCCAGCAACTC 59.460 52.381 0.00 0.00 0.00 3.01
2479 2518 3.006430 TCAAATCAGTCGTACTCCAGCAA 59.994 43.478 0.00 0.00 0.00 3.91
2491 2530 4.534168 CATCATGCGGATTCAAATCAGTC 58.466 43.478 5.19 0.00 37.15 3.51
2509 2548 1.079197 ACGCAGAACATCGCCATCA 60.079 52.632 0.00 0.00 0.00 3.07
2511 2550 1.079197 TCACGCAGAACATCGCCAT 60.079 52.632 0.00 0.00 0.00 4.40
2514 2553 1.738099 ACCTCACGCAGAACATCGC 60.738 57.895 0.00 0.00 0.00 4.58
2515 2554 0.388520 TCACCTCACGCAGAACATCG 60.389 55.000 0.00 0.00 0.00 3.84
2521 2560 2.203082 AGCACTCACCTCACGCAGA 61.203 57.895 0.00 0.00 0.00 4.26
2523 2562 2.026945 TTCAGCACTCACCTCACGCA 62.027 55.000 0.00 0.00 0.00 5.24
2524 2563 0.880278 TTTCAGCACTCACCTCACGC 60.880 55.000 0.00 0.00 0.00 5.34
2525 2564 1.462283 CATTTCAGCACTCACCTCACG 59.538 52.381 0.00 0.00 0.00 4.35
2526 2565 1.808945 CCATTTCAGCACTCACCTCAC 59.191 52.381 0.00 0.00 0.00 3.51
2527 2566 1.699083 TCCATTTCAGCACTCACCTCA 59.301 47.619 0.00 0.00 0.00 3.86
2576 2616 9.179552 CGTTTCATATGTTCAGAAATTTGTGAA 57.820 29.630 22.83 22.83 38.01 3.18
2578 2618 8.629986 GTCGTTTCATATGTTCAGAAATTTGTG 58.370 33.333 8.99 8.99 34.23 3.33
2579 2619 8.567948 AGTCGTTTCATATGTTCAGAAATTTGT 58.432 29.630 1.90 0.00 34.23 2.83
2581 2621 9.965824 AAAGTCGTTTCATATGTTCAGAAATTT 57.034 25.926 1.90 0.00 34.23 1.82
2584 2624 8.148807 TGAAAGTCGTTTCATATGTTCAGAAA 57.851 30.769 1.90 0.00 45.82 2.52
2585 2625 7.722795 TGAAAGTCGTTTCATATGTTCAGAA 57.277 32.000 1.90 0.00 45.82 3.02
2604 2644 2.875296 TGAACCACTTCCCCATGAAAG 58.125 47.619 0.00 0.00 31.06 2.62
2610 2650 0.178992 CTGCTTGAACCACTTCCCCA 60.179 55.000 0.00 0.00 0.00 4.96
2619 2659 0.721718 CCGAACGATCTGCTTGAACC 59.278 55.000 0.00 0.00 0.00 3.62
2636 2676 0.311790 AGCTTGCACACATTGTTCCG 59.688 50.000 0.00 0.00 0.00 4.30
2640 2680 0.956633 CCTGAGCTTGCACACATTGT 59.043 50.000 0.00 0.00 0.00 2.71
2641 2681 0.242825 CCCTGAGCTTGCACACATTG 59.757 55.000 0.00 0.00 0.00 2.82
2642 2682 0.111061 TCCCTGAGCTTGCACACATT 59.889 50.000 0.00 0.00 0.00 2.71
2643 2683 0.322277 CTCCCTGAGCTTGCACACAT 60.322 55.000 0.00 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.