Multiple sequence alignment - TraesCS5A01G050300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G050300 chr5A 100.000 3525 0 0 1 3525 46000361 46003885 0.000000e+00 6510.0
1 TraesCS5A01G050300 chr5A 92.154 701 51 4 2826 3524 46050956 46051654 0.000000e+00 987.0
2 TraesCS5A01G050300 chr5A 77.504 649 103 30 1838 2472 46418911 46419530 2.010000e-92 350.0
3 TraesCS5A01G050300 chr5A 77.077 650 104 33 1838 2472 46416423 46417042 2.030000e-87 333.0
4 TraesCS5A01G050300 chr5A 77.955 626 71 30 1924 2546 46492444 46493005 2.620000e-86 329.0
5 TraesCS5A01G050300 chr5D 95.681 2848 95 12 684 3525 57990563 57993388 0.000000e+00 4553.0
6 TraesCS5A01G050300 chr5D 86.478 318 29 10 2232 2546 58118637 58118943 1.570000e-88 337.0
7 TraesCS5A01G050300 chr5D 85.577 208 27 1 1916 2123 58118065 58118269 7.660000e-52 215.0
8 TraesCS5A01G050300 chr5B 92.921 1455 70 15 784 2236 62938901 62940324 0.000000e+00 2085.0
9 TraesCS5A01G050300 chr5B 86.544 1085 96 25 2238 3300 62940405 62941461 0.000000e+00 1149.0
10 TraesCS5A01G050300 chr5B 82.822 652 76 22 1901 2546 63255133 63255754 5.140000e-153 551.0
11 TraesCS5A01G050300 chr5B 78.559 583 97 18 1340 1905 63254536 63255107 3.350000e-95 359.0
12 TraesCS5A01G050300 chr5B 87.387 111 12 2 684 792 62917211 62917321 3.690000e-25 126.0
13 TraesCS5A01G050300 chr4A 96.513 975 29 3 2356 3326 564653898 564652925 0.000000e+00 1607.0
14 TraesCS5A01G050300 chr4A 97.087 206 6 0 3315 3520 564650311 564650106 7.240000e-92 348.0
15 TraesCS5A01G050300 chrUn 77.315 648 106 30 1838 2472 379638672 379639291 9.370000e-91 344.0
16 TraesCS5A01G050300 chrUn 76.825 630 101 33 1838 2452 254486012 254485413 2.640000e-81 313.0
17 TraesCS5A01G050300 chrUn 76.825 630 101 33 1838 2452 254488468 254487869 2.640000e-81 313.0
18 TraesCS5A01G050300 chrUn 88.889 72 8 0 2920 2991 64208752 64208823 4.850000e-14 89.8
19 TraesCS5A01G050300 chr7A 74.383 324 55 21 1 302 556313798 556314115 2.880000e-21 113.0
20 TraesCS5A01G050300 chr6D 87.671 73 9 0 234 306 429826546 429826618 6.270000e-13 86.1
21 TraesCS5A01G050300 chr6A 91.045 67 1 3 321 383 219553873 219553938 6.270000e-13 86.1
22 TraesCS5A01G050300 chr3D 91.803 61 5 0 251 311 396957334 396957394 6.270000e-13 86.1
23 TraesCS5A01G050300 chr2D 94.444 54 2 1 315 368 49187421 49187369 8.110000e-12 82.4
24 TraesCS5A01G050300 chr4B 100.000 28 0 0 341 368 625218559 625218532 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G050300 chr5A 46000361 46003885 3524 False 6510.0 6510 100.0000 1 3525 1 chr5A.!!$F1 3524
1 TraesCS5A01G050300 chr5A 46050956 46051654 698 False 987.0 987 92.1540 2826 3524 1 chr5A.!!$F2 698
2 TraesCS5A01G050300 chr5A 46416423 46419530 3107 False 341.5 350 77.2905 1838 2472 2 chr5A.!!$F4 634
3 TraesCS5A01G050300 chr5A 46492444 46493005 561 False 329.0 329 77.9550 1924 2546 1 chr5A.!!$F3 622
4 TraesCS5A01G050300 chr5D 57990563 57993388 2825 False 4553.0 4553 95.6810 684 3525 1 chr5D.!!$F1 2841
5 TraesCS5A01G050300 chr5D 58118065 58118943 878 False 276.0 337 86.0275 1916 2546 2 chr5D.!!$F2 630
6 TraesCS5A01G050300 chr5B 62938901 62941461 2560 False 1617.0 2085 89.7325 784 3300 2 chr5B.!!$F2 2516
7 TraesCS5A01G050300 chr5B 63254536 63255754 1218 False 455.0 551 80.6905 1340 2546 2 chr5B.!!$F3 1206
8 TraesCS5A01G050300 chr4A 564650106 564653898 3792 True 977.5 1607 96.8000 2356 3520 2 chr4A.!!$R1 1164
9 TraesCS5A01G050300 chrUn 379638672 379639291 619 False 344.0 344 77.3150 1838 2472 1 chrUn.!!$F2 634
10 TraesCS5A01G050300 chrUn 254485413 254488468 3055 True 313.0 313 76.8250 1838 2452 2 chrUn.!!$R1 614

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
173 174 0.026933 CGACGACGTCAGATGAGGAG 59.973 60.0 26.26 4.23 34.35 3.69 F
552 553 0.031449 GGCTGGAGCTACGATGACTC 59.969 60.0 0.00 0.00 41.70 3.36 F
1861 1891 0.037326 TTCTGCTCCGAATTGCGTCT 60.037 50.0 0.00 0.00 38.67 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1475 1479 0.621571 TGGGAATCTGTGAGGAGGGG 60.622 60.000 0.0 0.0 0.00 4.79 R
1882 4368 0.687354 AGACACTGGGGTAAGCACAG 59.313 55.000 0.0 0.0 38.19 3.66 R
3323 9758 3.287867 TTTCCTCCTTGATCATGGAGC 57.712 47.619 36.0 0.0 46.01 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.124612 CCATGGACGGCATCAGCA 60.125 61.111 5.56 0.00 44.61 4.41
29 30 1.527611 CCATGGACGGCATCAGCAT 60.528 57.895 5.56 0.00 44.61 3.79
30 31 1.105167 CCATGGACGGCATCAGCATT 61.105 55.000 5.56 0.00 44.61 3.56
31 32 0.030235 CATGGACGGCATCAGCATTG 59.970 55.000 0.00 0.00 44.61 2.82
32 33 1.105167 ATGGACGGCATCAGCATTGG 61.105 55.000 0.00 0.00 44.61 3.16
33 34 1.750399 GGACGGCATCAGCATTGGT 60.750 57.895 0.00 0.00 44.61 3.67
34 35 1.430632 GACGGCATCAGCATTGGTG 59.569 57.895 9.57 9.57 44.61 4.17
58 59 2.128729 GGTACCTAGCTGCAGAGGG 58.871 63.158 20.43 17.26 37.14 4.30
59 60 0.397254 GGTACCTAGCTGCAGAGGGA 60.397 60.000 20.43 10.52 37.14 4.20
60 61 1.036707 GTACCTAGCTGCAGAGGGAG 58.963 60.000 20.43 7.73 37.14 4.30
61 62 0.631753 TACCTAGCTGCAGAGGGAGT 59.368 55.000 20.43 9.85 37.14 3.85
62 63 0.686112 ACCTAGCTGCAGAGGGAGTC 60.686 60.000 20.43 0.00 37.14 3.36
63 64 1.398958 CCTAGCTGCAGAGGGAGTCC 61.399 65.000 20.43 0.00 34.49 3.85
65 66 0.685785 TAGCTGCAGAGGGAGTCCTG 60.686 60.000 20.43 0.28 45.05 3.86
66 67 1.986757 GCTGCAGAGGGAGTCCTGA 60.987 63.158 20.43 0.00 45.05 3.86
67 68 1.958902 GCTGCAGAGGGAGTCCTGAG 61.959 65.000 20.43 1.38 45.05 3.35
68 69 0.614415 CTGCAGAGGGAGTCCTGAGT 60.614 60.000 8.42 0.00 45.05 3.41
69 70 0.902048 TGCAGAGGGAGTCCTGAGTG 60.902 60.000 9.58 3.25 45.05 3.51
70 71 1.612395 GCAGAGGGAGTCCTGAGTGG 61.612 65.000 9.58 0.00 45.05 4.00
71 72 0.040351 CAGAGGGAGTCCTGAGTGGA 59.960 60.000 9.58 0.00 45.05 4.02
94 95 4.589374 ACTATGACATAGTCCAAGGTAGGC 59.411 45.833 20.29 0.00 42.17 3.93
95 96 2.827755 TGACATAGTCCAAGGTAGGCA 58.172 47.619 0.00 0.00 0.00 4.75
96 97 2.766263 TGACATAGTCCAAGGTAGGCAG 59.234 50.000 0.00 0.00 0.00 4.85
97 98 2.103263 GACATAGTCCAAGGTAGGCAGG 59.897 54.545 0.00 0.00 0.00 4.85
98 99 1.132500 ATAGTCCAAGGTAGGCAGGC 58.868 55.000 0.00 0.00 0.00 4.85
99 100 1.327690 TAGTCCAAGGTAGGCAGGCG 61.328 60.000 0.00 0.00 0.00 5.52
100 101 4.096003 TCCAAGGTAGGCAGGCGC 62.096 66.667 0.00 0.00 37.44 6.53
102 103 4.760047 CAAGGTAGGCAGGCGCGT 62.760 66.667 8.43 0.00 39.92 6.01
103 104 4.760047 AAGGTAGGCAGGCGCGTG 62.760 66.667 24.99 24.99 39.92 5.34
106 107 4.436998 GTAGGCAGGCGCGTGAGT 62.437 66.667 32.39 19.93 39.92 3.41
107 108 4.435436 TAGGCAGGCGCGTGAGTG 62.435 66.667 32.39 10.80 46.39 3.51
115 116 4.436998 CGCGTGAGTGGGGTCTCC 62.437 72.222 0.00 0.00 38.12 3.71
116 117 4.436998 GCGTGAGTGGGGTCTCCG 62.437 72.222 0.00 0.00 38.76 4.63
117 118 3.760035 CGTGAGTGGGGTCTCCGG 61.760 72.222 0.00 0.00 38.76 5.14
118 119 2.283676 GTGAGTGGGGTCTCCGGA 60.284 66.667 2.93 2.93 38.76 5.14
119 120 1.686110 GTGAGTGGGGTCTCCGGAT 60.686 63.158 3.57 0.00 38.76 4.18
120 121 1.685765 TGAGTGGGGTCTCCGGATG 60.686 63.158 3.57 0.00 38.76 3.51
121 122 1.686110 GAGTGGGGTCTCCGGATGT 60.686 63.158 3.57 0.00 38.76 3.06
122 123 1.677637 GAGTGGGGTCTCCGGATGTC 61.678 65.000 3.57 0.00 38.76 3.06
123 124 2.365105 TGGGGTCTCCGGATGTCC 60.365 66.667 3.57 7.92 38.76 4.02
133 134 3.555967 GGATGTCCGAGGATGGCT 58.444 61.111 0.00 0.00 0.00 4.75
134 135 1.070445 GGATGTCCGAGGATGGCTG 59.930 63.158 0.00 0.00 0.00 4.85
135 136 1.070445 GATGTCCGAGGATGGCTGG 59.930 63.158 0.00 0.00 0.00 4.85
136 137 2.388890 GATGTCCGAGGATGGCTGGG 62.389 65.000 0.00 0.00 0.00 4.45
137 138 4.554036 GTCCGAGGATGGCTGGGC 62.554 72.222 0.00 0.00 0.00 5.36
171 172 4.672550 CGACGACGTCAGATGAGG 57.327 61.111 26.26 5.66 36.14 3.86
172 173 2.087344 CGACGACGTCAGATGAGGA 58.913 57.895 26.26 0.00 34.35 3.71
173 174 0.026933 CGACGACGTCAGATGAGGAG 59.973 60.000 26.26 4.23 34.35 3.69
174 175 1.088306 GACGACGTCAGATGAGGAGT 58.912 55.000 22.66 1.18 34.35 3.85
175 176 1.469308 GACGACGTCAGATGAGGAGTT 59.531 52.381 22.66 0.00 34.35 3.01
176 177 1.200252 ACGACGTCAGATGAGGAGTTG 59.800 52.381 17.16 4.62 34.35 3.16
177 178 1.468224 CGACGTCAGATGAGGAGTTGG 60.468 57.143 17.16 0.00 34.35 3.77
178 179 1.546476 GACGTCAGATGAGGAGTTGGT 59.454 52.381 11.55 0.00 34.35 3.67
179 180 1.273606 ACGTCAGATGAGGAGTTGGTG 59.726 52.381 9.36 0.00 34.35 4.17
180 181 1.404717 CGTCAGATGAGGAGTTGGTGG 60.405 57.143 0.00 0.00 32.08 4.61
181 182 1.902508 GTCAGATGAGGAGTTGGTGGA 59.097 52.381 0.00 0.00 0.00 4.02
182 183 1.902508 TCAGATGAGGAGTTGGTGGAC 59.097 52.381 0.00 0.00 0.00 4.02
183 184 0.898320 AGATGAGGAGTTGGTGGACG 59.102 55.000 0.00 0.00 0.00 4.79
184 185 0.895530 GATGAGGAGTTGGTGGACGA 59.104 55.000 0.00 0.00 0.00 4.20
185 186 1.275291 GATGAGGAGTTGGTGGACGAA 59.725 52.381 0.00 0.00 0.00 3.85
186 187 1.124780 TGAGGAGTTGGTGGACGAAA 58.875 50.000 0.00 0.00 0.00 3.46
187 188 1.070134 TGAGGAGTTGGTGGACGAAAG 59.930 52.381 0.00 0.00 0.00 2.62
188 189 0.396811 AGGAGTTGGTGGACGAAAGG 59.603 55.000 0.00 0.00 0.00 3.11
189 190 0.395312 GGAGTTGGTGGACGAAAGGA 59.605 55.000 0.00 0.00 0.00 3.36
190 191 1.202722 GGAGTTGGTGGACGAAAGGAA 60.203 52.381 0.00 0.00 0.00 3.36
191 192 2.143925 GAGTTGGTGGACGAAAGGAAG 58.856 52.381 0.00 0.00 0.00 3.46
192 193 1.489230 AGTTGGTGGACGAAAGGAAGT 59.511 47.619 0.00 0.00 0.00 3.01
193 194 1.602377 GTTGGTGGACGAAAGGAAGTG 59.398 52.381 0.00 0.00 0.00 3.16
194 195 0.107831 TGGTGGACGAAAGGAAGTGG 59.892 55.000 0.00 0.00 0.00 4.00
195 196 0.605589 GGTGGACGAAAGGAAGTGGG 60.606 60.000 0.00 0.00 0.00 4.61
196 197 0.395312 GTGGACGAAAGGAAGTGGGA 59.605 55.000 0.00 0.00 0.00 4.37
197 198 0.685097 TGGACGAAAGGAAGTGGGAG 59.315 55.000 0.00 0.00 0.00 4.30
198 199 0.685660 GGACGAAAGGAAGTGGGAGT 59.314 55.000 0.00 0.00 0.00 3.85
199 200 1.897802 GGACGAAAGGAAGTGGGAGTA 59.102 52.381 0.00 0.00 0.00 2.59
200 201 2.094130 GGACGAAAGGAAGTGGGAGTAG 60.094 54.545 0.00 0.00 0.00 2.57
201 202 1.900486 ACGAAAGGAAGTGGGAGTAGG 59.100 52.381 0.00 0.00 0.00 3.18
202 203 1.207329 CGAAAGGAAGTGGGAGTAGGG 59.793 57.143 0.00 0.00 0.00 3.53
203 204 1.560146 GAAAGGAAGTGGGAGTAGGGG 59.440 57.143 0.00 0.00 0.00 4.79
204 205 0.914902 AAGGAAGTGGGAGTAGGGGC 60.915 60.000 0.00 0.00 0.00 5.80
205 206 2.732619 GGAAGTGGGAGTAGGGGCG 61.733 68.421 0.00 0.00 0.00 6.13
206 207 1.684734 GAAGTGGGAGTAGGGGCGA 60.685 63.158 0.00 0.00 0.00 5.54
207 208 1.229400 AAGTGGGAGTAGGGGCGAA 60.229 57.895 0.00 0.00 0.00 4.70
208 209 1.265454 AAGTGGGAGTAGGGGCGAAG 61.265 60.000 0.00 0.00 0.00 3.79
209 210 1.988406 GTGGGAGTAGGGGCGAAGT 60.988 63.158 0.00 0.00 0.00 3.01
210 211 1.987855 TGGGAGTAGGGGCGAAGTG 60.988 63.158 0.00 0.00 0.00 3.16
211 212 2.732619 GGGAGTAGGGGCGAAGTGG 61.733 68.421 0.00 0.00 0.00 4.00
212 213 1.684734 GGAGTAGGGGCGAAGTGGA 60.685 63.158 0.00 0.00 0.00 4.02
213 214 1.262640 GGAGTAGGGGCGAAGTGGAA 61.263 60.000 0.00 0.00 0.00 3.53
214 215 0.175989 GAGTAGGGGCGAAGTGGAAG 59.824 60.000 0.00 0.00 0.00 3.46
215 216 0.252103 AGTAGGGGCGAAGTGGAAGA 60.252 55.000 0.00 0.00 0.00 2.87
216 217 0.611714 GTAGGGGCGAAGTGGAAGAA 59.388 55.000 0.00 0.00 0.00 2.52
217 218 1.002773 GTAGGGGCGAAGTGGAAGAAA 59.997 52.381 0.00 0.00 0.00 2.52
218 219 0.476771 AGGGGCGAAGTGGAAGAAAA 59.523 50.000 0.00 0.00 0.00 2.29
219 220 0.881796 GGGGCGAAGTGGAAGAAAAG 59.118 55.000 0.00 0.00 0.00 2.27
220 221 0.881796 GGGCGAAGTGGAAGAAAAGG 59.118 55.000 0.00 0.00 0.00 3.11
221 222 0.881796 GGCGAAGTGGAAGAAAAGGG 59.118 55.000 0.00 0.00 0.00 3.95
222 223 0.881796 GCGAAGTGGAAGAAAAGGGG 59.118 55.000 0.00 0.00 0.00 4.79
223 224 1.544759 GCGAAGTGGAAGAAAAGGGGA 60.545 52.381 0.00 0.00 0.00 4.81
224 225 2.427506 CGAAGTGGAAGAAAAGGGGAG 58.572 52.381 0.00 0.00 0.00 4.30
225 226 2.163509 GAAGTGGAAGAAAAGGGGAGC 58.836 52.381 0.00 0.00 0.00 4.70
226 227 0.036875 AGTGGAAGAAAAGGGGAGCG 59.963 55.000 0.00 0.00 0.00 5.03
227 228 0.960861 GTGGAAGAAAAGGGGAGCGG 60.961 60.000 0.00 0.00 0.00 5.52
228 229 1.378646 GGAAGAAAAGGGGAGCGGG 60.379 63.158 0.00 0.00 0.00 6.13
229 230 1.683441 GAAGAAAAGGGGAGCGGGA 59.317 57.895 0.00 0.00 0.00 5.14
230 231 0.393132 GAAGAAAAGGGGAGCGGGAG 60.393 60.000 0.00 0.00 0.00 4.30
231 232 1.853250 AAGAAAAGGGGAGCGGGAGG 61.853 60.000 0.00 0.00 0.00 4.30
232 233 2.204090 AAAAGGGGAGCGGGAGGA 60.204 61.111 0.00 0.00 0.00 3.71
233 234 1.848886 GAAAAGGGGAGCGGGAGGAA 61.849 60.000 0.00 0.00 0.00 3.36
234 235 1.853250 AAAAGGGGAGCGGGAGGAAG 61.853 60.000 0.00 0.00 0.00 3.46
235 236 2.765705 AAAGGGGAGCGGGAGGAAGA 62.766 60.000 0.00 0.00 0.00 2.87
236 237 2.446802 GGGGAGCGGGAGGAAGAT 60.447 66.667 0.00 0.00 0.00 2.40
237 238 2.073101 GGGGAGCGGGAGGAAGATT 61.073 63.158 0.00 0.00 0.00 2.40
238 239 1.636769 GGGGAGCGGGAGGAAGATTT 61.637 60.000 0.00 0.00 0.00 2.17
239 240 0.464554 GGGAGCGGGAGGAAGATTTG 60.465 60.000 0.00 0.00 0.00 2.32
240 241 0.541863 GGAGCGGGAGGAAGATTTGA 59.458 55.000 0.00 0.00 0.00 2.69
241 242 1.474143 GGAGCGGGAGGAAGATTTGAG 60.474 57.143 0.00 0.00 0.00 3.02
242 243 1.208293 GAGCGGGAGGAAGATTTGAGT 59.792 52.381 0.00 0.00 0.00 3.41
243 244 1.065854 AGCGGGAGGAAGATTTGAGTG 60.066 52.381 0.00 0.00 0.00 3.51
244 245 1.339151 GCGGGAGGAAGATTTGAGTGT 60.339 52.381 0.00 0.00 0.00 3.55
245 246 2.350522 CGGGAGGAAGATTTGAGTGTG 58.649 52.381 0.00 0.00 0.00 3.82
246 247 2.289694 CGGGAGGAAGATTTGAGTGTGT 60.290 50.000 0.00 0.00 0.00 3.72
247 248 3.339141 GGGAGGAAGATTTGAGTGTGTC 58.661 50.000 0.00 0.00 0.00 3.67
248 249 2.996621 GGAGGAAGATTTGAGTGTGTCG 59.003 50.000 0.00 0.00 0.00 4.35
249 250 3.306088 GGAGGAAGATTTGAGTGTGTCGA 60.306 47.826 0.00 0.00 0.00 4.20
250 251 3.919216 AGGAAGATTTGAGTGTGTCGAG 58.081 45.455 0.00 0.00 0.00 4.04
251 252 2.996621 GGAAGATTTGAGTGTGTCGAGG 59.003 50.000 0.00 0.00 0.00 4.63
252 253 2.751166 AGATTTGAGTGTGTCGAGGG 57.249 50.000 0.00 0.00 0.00 4.30
253 254 1.079503 GATTTGAGTGTGTCGAGGGC 58.920 55.000 0.00 0.00 0.00 5.19
254 255 0.670546 ATTTGAGTGTGTCGAGGGCG 60.671 55.000 0.00 0.00 39.35 6.13
255 256 2.023414 TTTGAGTGTGTCGAGGGCGT 62.023 55.000 0.00 0.00 38.98 5.68
256 257 2.126424 GAGTGTGTCGAGGGCGTC 60.126 66.667 0.00 0.00 38.98 5.19
264 265 2.823147 CGAGGGCGTCGTAGTCCT 60.823 66.667 20.45 5.78 44.20 3.85
265 266 1.522355 CGAGGGCGTCGTAGTCCTA 60.522 63.158 20.45 0.00 44.20 2.94
266 267 1.497223 CGAGGGCGTCGTAGTCCTAG 61.497 65.000 20.45 3.12 44.20 3.02
267 268 1.153005 AGGGCGTCGTAGTCCTAGG 60.153 63.158 0.82 0.82 0.00 3.02
268 269 1.452833 GGGCGTCGTAGTCCTAGGT 60.453 63.158 9.08 0.00 0.00 3.08
269 270 1.722636 GGGCGTCGTAGTCCTAGGTG 61.723 65.000 9.08 0.00 0.00 4.00
270 271 1.722636 GGCGTCGTAGTCCTAGGTGG 61.723 65.000 9.08 0.00 37.10 4.61
271 272 1.726265 CGTCGTAGTCCTAGGTGGC 59.274 63.158 9.08 0.60 35.26 5.01
272 273 0.747283 CGTCGTAGTCCTAGGTGGCT 60.747 60.000 9.08 8.41 35.26 4.75
273 274 0.739561 GTCGTAGTCCTAGGTGGCTG 59.260 60.000 9.08 0.00 35.26 4.85
274 275 0.395311 TCGTAGTCCTAGGTGGCTGG 60.395 60.000 9.08 3.65 35.26 4.85
275 276 0.683504 CGTAGTCCTAGGTGGCTGGT 60.684 60.000 9.08 0.00 35.26 4.00
276 277 0.824759 GTAGTCCTAGGTGGCTGGTG 59.175 60.000 9.08 0.00 35.26 4.17
277 278 0.412244 TAGTCCTAGGTGGCTGGTGT 59.588 55.000 9.08 0.00 35.26 4.16
278 279 0.905337 AGTCCTAGGTGGCTGGTGTC 60.905 60.000 9.08 0.00 35.26 3.67
279 280 1.612442 TCCTAGGTGGCTGGTGTCC 60.612 63.158 9.08 0.00 35.26 4.02
280 281 2.579201 CTAGGTGGCTGGTGTCCG 59.421 66.667 0.00 0.00 0.00 4.79
281 282 3.000819 TAGGTGGCTGGTGTCCGG 61.001 66.667 0.00 0.00 0.00 5.14
282 283 3.533079 TAGGTGGCTGGTGTCCGGA 62.533 63.158 0.00 0.00 29.82 5.14
283 284 4.699522 GGTGGCTGGTGTCCGGAC 62.700 72.222 28.17 28.17 38.71 4.79
284 285 3.626924 GTGGCTGGTGTCCGGACT 61.627 66.667 33.39 0.00 39.09 3.85
285 286 3.311110 TGGCTGGTGTCCGGACTC 61.311 66.667 33.39 29.15 39.09 3.36
286 287 4.083862 GGCTGGTGTCCGGACTCC 62.084 72.222 37.57 37.57 43.33 3.85
287 288 4.083862 GCTGGTGTCCGGACTCCC 62.084 72.222 39.36 33.29 42.61 4.30
297 298 4.035102 GGACTCCCGCAAAGCCCT 62.035 66.667 0.00 0.00 0.00 5.19
298 299 2.436824 GACTCCCGCAAAGCCCTC 60.437 66.667 0.00 0.00 0.00 4.30
299 300 2.930562 ACTCCCGCAAAGCCCTCT 60.931 61.111 0.00 0.00 0.00 3.69
300 301 1.612442 ACTCCCGCAAAGCCCTCTA 60.612 57.895 0.00 0.00 0.00 2.43
301 302 1.198759 ACTCCCGCAAAGCCCTCTAA 61.199 55.000 0.00 0.00 0.00 2.10
302 303 0.744771 CTCCCGCAAAGCCCTCTAAC 60.745 60.000 0.00 0.00 0.00 2.34
303 304 1.198759 TCCCGCAAAGCCCTCTAACT 61.199 55.000 0.00 0.00 0.00 2.24
304 305 0.322546 CCCGCAAAGCCCTCTAACTT 60.323 55.000 0.00 0.00 0.00 2.66
305 306 0.804989 CCGCAAAGCCCTCTAACTTG 59.195 55.000 0.00 0.00 0.00 3.16
306 307 0.169009 CGCAAAGCCCTCTAACTTGC 59.831 55.000 0.00 0.00 0.00 4.01
307 308 1.539157 GCAAAGCCCTCTAACTTGCT 58.461 50.000 0.00 0.00 35.08 3.91
308 309 1.889170 GCAAAGCCCTCTAACTTGCTT 59.111 47.619 0.00 0.00 45.40 3.91
309 310 2.095008 GCAAAGCCCTCTAACTTGCTTC 60.095 50.000 0.00 0.00 42.85 3.86
310 311 2.489722 CAAAGCCCTCTAACTTGCTTCC 59.510 50.000 0.00 0.00 42.85 3.46
311 312 1.362224 AGCCCTCTAACTTGCTTCCA 58.638 50.000 0.00 0.00 0.00 3.53
312 313 1.705186 AGCCCTCTAACTTGCTTCCAA 59.295 47.619 0.00 0.00 0.00 3.53
313 314 2.310052 AGCCCTCTAACTTGCTTCCAAT 59.690 45.455 0.00 0.00 0.00 3.16
314 315 3.092301 GCCCTCTAACTTGCTTCCAATT 58.908 45.455 0.00 0.00 0.00 2.32
315 316 3.119352 GCCCTCTAACTTGCTTCCAATTG 60.119 47.826 0.00 0.00 0.00 2.32
316 317 3.445096 CCCTCTAACTTGCTTCCAATTGG 59.555 47.826 19.08 19.08 0.00 3.16
317 318 3.445096 CCTCTAACTTGCTTCCAATTGGG 59.555 47.826 24.29 10.40 35.41 4.12
318 319 3.430453 TCTAACTTGCTTCCAATTGGGG 58.570 45.455 24.29 17.36 37.22 4.96
319 320 2.397044 AACTTGCTTCCAATTGGGGA 57.603 45.000 24.29 12.33 37.22 4.81
320 321 2.397044 ACTTGCTTCCAATTGGGGAA 57.603 45.000 24.29 14.87 44.50 3.97
321 322 2.906568 ACTTGCTTCCAATTGGGGAAT 58.093 42.857 24.29 4.80 45.49 3.01
322 323 3.250617 ACTTGCTTCCAATTGGGGAATT 58.749 40.909 24.29 8.15 45.49 2.17
323 324 3.652387 ACTTGCTTCCAATTGGGGAATTT 59.348 39.130 24.29 4.42 45.49 1.82
324 325 3.699411 TGCTTCCAATTGGGGAATTTG 57.301 42.857 24.29 7.97 45.49 2.32
325 326 3.246301 TGCTTCCAATTGGGGAATTTGA 58.754 40.909 24.29 0.00 45.49 2.69
326 327 3.845398 TGCTTCCAATTGGGGAATTTGAT 59.155 39.130 24.29 0.00 45.49 2.57
327 328 4.289148 TGCTTCCAATTGGGGAATTTGATT 59.711 37.500 24.29 0.00 45.49 2.57
328 329 5.222089 TGCTTCCAATTGGGGAATTTGATTT 60.222 36.000 24.29 0.00 45.49 2.17
329 330 5.711506 GCTTCCAATTGGGGAATTTGATTTT 59.288 36.000 24.29 0.00 45.49 1.82
330 331 6.209192 GCTTCCAATTGGGGAATTTGATTTTT 59.791 34.615 24.29 0.00 45.49 1.94
348 349 3.810310 TTTTGCCACCACTTACTTTGG 57.190 42.857 0.00 0.00 40.32 3.28
349 350 2.738587 TTGCCACCACTTACTTTGGA 57.261 45.000 0.00 0.00 37.58 3.53
350 351 1.975660 TGCCACCACTTACTTTGGAC 58.024 50.000 0.00 0.00 37.58 4.02
351 352 1.493022 TGCCACCACTTACTTTGGACT 59.507 47.619 0.00 0.00 37.58 3.85
352 353 2.092103 TGCCACCACTTACTTTGGACTT 60.092 45.455 0.00 0.00 37.58 3.01
353 354 2.956333 GCCACCACTTACTTTGGACTTT 59.044 45.455 0.00 0.00 37.58 2.66
354 355 3.243401 GCCACCACTTACTTTGGACTTTG 60.243 47.826 0.00 0.00 37.58 2.77
355 356 4.204012 CCACCACTTACTTTGGACTTTGA 58.796 43.478 0.00 0.00 37.58 2.69
356 357 4.827284 CCACCACTTACTTTGGACTTTGAT 59.173 41.667 0.00 0.00 37.58 2.57
357 358 6.001460 CCACCACTTACTTTGGACTTTGATA 58.999 40.000 0.00 0.00 37.58 2.15
358 359 6.659242 CCACCACTTACTTTGGACTTTGATAT 59.341 38.462 0.00 0.00 37.58 1.63
359 360 7.176690 CCACCACTTACTTTGGACTTTGATATT 59.823 37.037 0.00 0.00 37.58 1.28
360 361 8.576442 CACCACTTACTTTGGACTTTGATATTT 58.424 33.333 0.00 0.00 37.58 1.40
361 362 9.143155 ACCACTTACTTTGGACTTTGATATTTT 57.857 29.630 0.00 0.00 37.58 1.82
362 363 9.410556 CCACTTACTTTGGACTTTGATATTTTG 57.589 33.333 0.00 0.00 36.02 2.44
363 364 8.915654 CACTTACTTTGGACTTTGATATTTTGC 58.084 33.333 0.00 0.00 0.00 3.68
364 365 8.088365 ACTTACTTTGGACTTTGATATTTTGCC 58.912 33.333 0.00 0.00 0.00 4.52
365 366 6.418057 ACTTTGGACTTTGATATTTTGCCA 57.582 33.333 0.00 0.00 0.00 4.92
366 367 6.223120 ACTTTGGACTTTGATATTTTGCCAC 58.777 36.000 0.00 0.00 0.00 5.01
367 368 6.041979 ACTTTGGACTTTGATATTTTGCCACT 59.958 34.615 0.00 0.00 0.00 4.00
368 369 7.232534 ACTTTGGACTTTGATATTTTGCCACTA 59.767 33.333 0.00 0.00 0.00 2.74
369 370 6.509418 TGGACTTTGATATTTTGCCACTAC 57.491 37.500 0.00 0.00 0.00 2.73
370 371 6.245408 TGGACTTTGATATTTTGCCACTACT 58.755 36.000 0.00 0.00 0.00 2.57
371 372 6.719370 TGGACTTTGATATTTTGCCACTACTT 59.281 34.615 0.00 0.00 0.00 2.24
372 373 7.232534 TGGACTTTGATATTTTGCCACTACTTT 59.767 33.333 0.00 0.00 0.00 2.66
373 374 7.542130 GGACTTTGATATTTTGCCACTACTTTG 59.458 37.037 0.00 0.00 0.00 2.77
374 375 7.951591 ACTTTGATATTTTGCCACTACTTTGT 58.048 30.769 0.00 0.00 0.00 2.83
375 376 9.073475 ACTTTGATATTTTGCCACTACTTTGTA 57.927 29.630 0.00 0.00 0.00 2.41
376 377 9.906660 CTTTGATATTTTGCCACTACTTTGTAA 57.093 29.630 0.00 0.00 0.00 2.41
385 386 9.906660 TTTGCCACTACTTTGTAATTTGATAAG 57.093 29.630 0.00 0.00 0.00 1.73
386 387 8.630054 TGCCACTACTTTGTAATTTGATAAGT 57.370 30.769 0.00 0.00 33.89 2.24
387 388 9.073475 TGCCACTACTTTGTAATTTGATAAGTT 57.927 29.630 0.00 0.00 31.94 2.66
388 389 9.908152 GCCACTACTTTGTAATTTGATAAGTTT 57.092 29.630 0.00 0.00 31.94 2.66
397 398 8.424628 TGTAATTTGATAAGTTTTTACACGCG 57.575 30.769 3.53 3.53 0.00 6.01
398 399 6.921332 AATTTGATAAGTTTTTACACGCGG 57.079 33.333 12.47 1.27 0.00 6.46
399 400 5.670149 TTTGATAAGTTTTTACACGCGGA 57.330 34.783 12.47 0.00 0.00 5.54
400 401 5.866335 TTGATAAGTTTTTACACGCGGAT 57.134 34.783 12.47 0.00 0.00 4.18
401 402 6.964741 TTGATAAGTTTTTACACGCGGATA 57.035 33.333 12.47 0.00 0.00 2.59
402 403 6.964741 TGATAAGTTTTTACACGCGGATAA 57.035 33.333 12.47 5.56 0.00 1.75
403 404 7.542534 TGATAAGTTTTTACACGCGGATAAT 57.457 32.000 12.47 0.00 0.00 1.28
404 405 7.403421 TGATAAGTTTTTACACGCGGATAATG 58.597 34.615 12.47 0.56 0.00 1.90
405 406 4.609691 AGTTTTTACACGCGGATAATGG 57.390 40.909 12.47 0.00 0.00 3.16
406 407 3.375922 AGTTTTTACACGCGGATAATGGG 59.624 43.478 12.47 0.00 0.00 4.00
407 408 1.301423 TTTACACGCGGATAATGGGC 58.699 50.000 12.47 0.00 0.00 5.36
415 416 2.627945 GCGGATAATGGGCGAATATCA 58.372 47.619 6.87 0.00 0.00 2.15
416 417 2.609459 GCGGATAATGGGCGAATATCAG 59.391 50.000 6.87 4.13 0.00 2.90
417 418 2.609459 CGGATAATGGGCGAATATCAGC 59.391 50.000 6.87 0.00 0.00 4.26
418 419 3.679917 CGGATAATGGGCGAATATCAGCT 60.680 47.826 6.87 0.00 0.00 4.24
419 420 3.873952 GGATAATGGGCGAATATCAGCTC 59.126 47.826 6.87 0.00 0.00 4.09
422 423 2.245159 TGGGCGAATATCAGCTCAAG 57.755 50.000 2.81 0.00 41.41 3.02
423 424 1.202687 TGGGCGAATATCAGCTCAAGG 60.203 52.381 2.81 0.00 41.41 3.61
424 425 1.070758 GGGCGAATATCAGCTCAAGGA 59.929 52.381 0.00 0.00 33.25 3.36
425 426 2.411904 GGCGAATATCAGCTCAAGGAG 58.588 52.381 0.00 0.00 0.00 3.69
426 427 2.411904 GCGAATATCAGCTCAAGGAGG 58.588 52.381 0.00 0.00 0.00 4.30
427 428 2.224161 GCGAATATCAGCTCAAGGAGGT 60.224 50.000 0.00 0.00 41.33 3.85
428 429 3.005897 GCGAATATCAGCTCAAGGAGGTA 59.994 47.826 0.00 0.00 38.40 3.08
429 430 4.501571 GCGAATATCAGCTCAAGGAGGTAA 60.502 45.833 0.00 0.00 38.40 2.85
430 431 5.788450 CGAATATCAGCTCAAGGAGGTAAT 58.212 41.667 0.00 0.00 38.40 1.89
431 432 5.866633 CGAATATCAGCTCAAGGAGGTAATC 59.133 44.000 0.00 0.00 38.40 1.75
440 441 3.269520 GGAGGTAATCCGAGCGAAC 57.730 57.895 0.00 0.00 38.67 3.95
441 442 0.594284 GGAGGTAATCCGAGCGAACG 60.594 60.000 0.00 0.00 38.67 3.95
442 443 0.100146 GAGGTAATCCGAGCGAACGT 59.900 55.000 0.00 0.00 39.05 3.99
443 444 0.529378 AGGTAATCCGAGCGAACGTT 59.471 50.000 0.00 0.00 39.05 3.99
444 445 1.067354 AGGTAATCCGAGCGAACGTTT 60.067 47.619 0.46 0.00 39.05 3.60
445 446 1.060122 GGTAATCCGAGCGAACGTTTG 59.940 52.381 11.39 11.39 0.00 2.93
446 447 1.723003 GTAATCCGAGCGAACGTTTGT 59.277 47.619 16.75 4.06 0.00 2.83
447 448 1.223187 AATCCGAGCGAACGTTTGTT 58.777 45.000 16.75 11.09 42.23 2.83
469 470 2.530460 CCAATGGGAAGGGATGAACA 57.470 50.000 0.00 0.00 35.59 3.18
470 471 2.818921 CCAATGGGAAGGGATGAACAA 58.181 47.619 0.00 0.00 35.59 2.83
471 472 2.497273 CCAATGGGAAGGGATGAACAAC 59.503 50.000 0.00 0.00 35.59 3.32
472 473 3.164268 CAATGGGAAGGGATGAACAACA 58.836 45.455 0.00 0.00 0.00 3.33
473 474 3.763557 ATGGGAAGGGATGAACAACAT 57.236 42.857 0.00 0.00 42.47 2.71
474 475 3.541242 TGGGAAGGGATGAACAACATT 57.459 42.857 0.00 0.00 39.56 2.71
475 476 3.855668 TGGGAAGGGATGAACAACATTT 58.144 40.909 0.00 0.00 39.56 2.32
476 477 4.230455 TGGGAAGGGATGAACAACATTTT 58.770 39.130 0.00 0.00 39.56 1.82
477 478 4.283212 TGGGAAGGGATGAACAACATTTTC 59.717 41.667 0.00 0.00 39.56 2.29
478 479 4.283212 GGGAAGGGATGAACAACATTTTCA 59.717 41.667 0.00 0.00 39.56 2.69
479 480 5.046376 GGGAAGGGATGAACAACATTTTCAT 60.046 40.000 0.00 0.00 44.64 2.57
480 481 6.466812 GGAAGGGATGAACAACATTTTCATT 58.533 36.000 0.00 0.00 42.53 2.57
481 482 6.591448 GGAAGGGATGAACAACATTTTCATTC 59.409 38.462 0.00 0.00 42.53 2.67
482 483 6.669125 AGGGATGAACAACATTTTCATTCA 57.331 33.333 5.86 0.00 42.53 2.57
483 484 6.458210 AGGGATGAACAACATTTTCATTCAC 58.542 36.000 5.86 0.00 42.53 3.18
484 485 6.268387 AGGGATGAACAACATTTTCATTCACT 59.732 34.615 5.86 1.37 42.53 3.41
485 486 7.451255 AGGGATGAACAACATTTTCATTCACTA 59.549 33.333 5.86 0.00 42.53 2.74
486 487 8.087750 GGGATGAACAACATTTTCATTCACTAA 58.912 33.333 5.86 0.00 42.53 2.24
487 488 9.474920 GGATGAACAACATTTTCATTCACTAAA 57.525 29.630 0.00 0.00 42.53 1.85
499 500 9.498307 TTTTCATTCACTAAAAGAAGAAACGAC 57.502 29.630 0.00 0.00 29.96 4.34
500 501 8.433421 TTCATTCACTAAAAGAAGAAACGACT 57.567 30.769 0.00 0.00 0.00 4.18
501 502 8.073355 TCATTCACTAAAAGAAGAAACGACTC 57.927 34.615 0.00 0.00 0.00 3.36
502 503 7.926555 TCATTCACTAAAAGAAGAAACGACTCT 59.073 33.333 0.00 0.00 0.00 3.24
503 504 7.695869 TTCACTAAAAGAAGAAACGACTCTC 57.304 36.000 0.00 0.00 0.00 3.20
504 505 6.802608 TCACTAAAAGAAGAAACGACTCTCA 58.197 36.000 0.00 0.00 0.00 3.27
505 506 6.696148 TCACTAAAAGAAGAAACGACTCTCAC 59.304 38.462 0.00 0.00 0.00 3.51
506 507 6.475727 CACTAAAAGAAGAAACGACTCTCACA 59.524 38.462 0.00 0.00 0.00 3.58
507 508 5.975410 AAAAGAAGAAACGACTCTCACAG 57.025 39.130 0.00 0.00 0.00 3.66
508 509 4.920640 AAGAAGAAACGACTCTCACAGA 57.079 40.909 0.00 0.00 0.00 3.41
510 511 4.138290 AGAAGAAACGACTCTCACAGAGA 58.862 43.478 7.55 0.00 45.07 3.10
511 512 4.764823 AGAAGAAACGACTCTCACAGAGAT 59.235 41.667 7.55 0.00 45.07 2.75
512 513 4.433186 AGAAACGACTCTCACAGAGATG 57.567 45.455 7.55 2.10 45.07 2.90
513 514 3.192422 AGAAACGACTCTCACAGAGATGG 59.808 47.826 7.55 0.00 45.07 3.51
514 515 0.814457 ACGACTCTCACAGAGATGGC 59.186 55.000 7.55 0.00 45.07 4.40
515 516 0.248417 CGACTCTCACAGAGATGGCG 60.248 60.000 7.55 5.40 45.07 5.69
516 517 1.098869 GACTCTCACAGAGATGGCGA 58.901 55.000 7.55 0.00 45.07 5.54
517 518 1.680735 GACTCTCACAGAGATGGCGAT 59.319 52.381 7.55 0.00 45.07 4.58
518 519 1.408340 ACTCTCACAGAGATGGCGATG 59.592 52.381 7.55 0.00 45.07 3.84
519 520 0.103755 TCTCACAGAGATGGCGATGC 59.896 55.000 0.00 0.00 33.35 3.91
520 521 0.104487 CTCACAGAGATGGCGATGCT 59.896 55.000 0.00 0.00 0.00 3.79
521 522 0.179092 TCACAGAGATGGCGATGCTG 60.179 55.000 6.62 6.62 0.00 4.41
522 523 1.145598 ACAGAGATGGCGATGCTGG 59.854 57.895 11.24 0.00 0.00 4.85
523 524 1.332889 ACAGAGATGGCGATGCTGGA 61.333 55.000 11.24 0.00 0.00 3.86
524 525 0.179065 CAGAGATGGCGATGCTGGAA 60.179 55.000 0.00 0.00 0.00 3.53
525 526 0.106335 AGAGATGGCGATGCTGGAAG 59.894 55.000 0.00 0.00 0.00 3.46
536 537 2.281761 CTGGAAGCGGTGTTGGCT 60.282 61.111 0.00 0.00 44.02 4.75
537 538 2.594303 TGGAAGCGGTGTTGGCTG 60.594 61.111 0.00 0.00 41.39 4.85
538 539 3.365265 GGAAGCGGTGTTGGCTGG 61.365 66.667 0.00 0.00 41.39 4.85
539 540 2.281484 GAAGCGGTGTTGGCTGGA 60.281 61.111 0.00 0.00 41.39 3.86
540 541 2.281761 AAGCGGTGTTGGCTGGAG 60.282 61.111 0.00 0.00 41.39 3.86
543 544 2.662596 CGGTGTTGGCTGGAGCTA 59.337 61.111 0.00 0.00 41.70 3.32
544 545 1.741770 CGGTGTTGGCTGGAGCTAC 60.742 63.158 0.00 0.00 41.70 3.58
545 546 1.741770 GGTGTTGGCTGGAGCTACG 60.742 63.158 0.00 0.00 41.70 3.51
546 547 1.292223 GTGTTGGCTGGAGCTACGA 59.708 57.895 0.00 0.00 41.70 3.43
547 548 0.108138 GTGTTGGCTGGAGCTACGAT 60.108 55.000 0.00 0.00 41.70 3.73
548 549 0.108186 TGTTGGCTGGAGCTACGATG 60.108 55.000 0.00 0.00 41.70 3.84
549 550 0.175760 GTTGGCTGGAGCTACGATGA 59.824 55.000 0.00 0.00 41.70 2.92
550 551 0.175760 TTGGCTGGAGCTACGATGAC 59.824 55.000 0.00 0.00 41.70 3.06
551 552 0.684479 TGGCTGGAGCTACGATGACT 60.684 55.000 0.00 0.00 41.70 3.41
552 553 0.031449 GGCTGGAGCTACGATGACTC 59.969 60.000 0.00 0.00 41.70 3.36
553 554 0.317436 GCTGGAGCTACGATGACTCG 60.317 60.000 0.00 0.00 43.49 4.18
554 555 2.674344 GCTGGAGCTACGATGACTCGA 61.674 57.143 1.54 0.00 41.84 4.04
555 556 3.956883 GCTGGAGCTACGATGACTCGAT 61.957 54.545 1.54 0.00 41.84 3.59
556 557 4.659687 GCTGGAGCTACGATGACTCGATA 61.660 52.174 1.54 0.00 41.84 2.92
557 558 6.092890 GCTGGAGCTACGATGACTCGATAA 62.093 50.000 1.54 0.00 41.84 1.75
558 559 7.807608 GCTGGAGCTACGATGACTCGATAAG 62.808 52.000 1.54 0.00 41.84 1.73
565 566 3.717400 GATGACTCGATAAGGCTGTCA 57.283 47.619 5.68 5.68 41.07 3.58
566 567 2.941453 TGACTCGATAAGGCTGTCAC 57.059 50.000 0.00 0.00 33.45 3.67
567 568 1.476891 TGACTCGATAAGGCTGTCACC 59.523 52.381 0.00 0.00 33.45 4.02
568 569 0.456221 ACTCGATAAGGCTGTCACCG 59.544 55.000 0.00 0.00 33.69 4.94
569 570 0.456221 CTCGATAAGGCTGTCACCGT 59.544 55.000 0.00 0.00 33.69 4.83
570 571 0.454600 TCGATAAGGCTGTCACCGTC 59.545 55.000 0.00 0.00 33.69 4.79
571 572 0.866061 CGATAAGGCTGTCACCGTCG 60.866 60.000 0.00 0.00 33.69 5.12
572 573 0.527817 GATAAGGCTGTCACCGTCGG 60.528 60.000 10.48 10.48 33.69 4.79
573 574 1.255667 ATAAGGCTGTCACCGTCGGT 61.256 55.000 12.23 12.23 35.62 4.69
582 583 2.732658 ACCGTCGGTGACAGAACC 59.267 61.111 18.08 0.00 32.98 3.62
583 584 1.831286 ACCGTCGGTGACAGAACCT 60.831 57.895 18.08 0.00 38.14 3.50
584 585 0.538057 ACCGTCGGTGACAGAACCTA 60.538 55.000 18.08 0.00 38.14 3.08
585 586 0.599558 CCGTCGGTGACAGAACCTAA 59.400 55.000 2.08 0.00 38.14 2.69
586 587 1.000060 CCGTCGGTGACAGAACCTAAA 60.000 52.381 2.08 0.00 38.14 1.85
587 588 2.546373 CCGTCGGTGACAGAACCTAAAA 60.546 50.000 2.08 0.00 38.14 1.52
588 589 2.473984 CGTCGGTGACAGAACCTAAAAC 59.526 50.000 0.00 0.00 38.14 2.43
589 590 2.804527 GTCGGTGACAGAACCTAAAACC 59.195 50.000 0.00 0.00 38.14 3.27
590 591 1.796459 CGGTGACAGAACCTAAAACCG 59.204 52.381 0.00 0.00 42.53 4.44
591 592 3.116079 GGTGACAGAACCTAAAACCGA 57.884 47.619 0.00 0.00 37.24 4.69
592 593 3.064931 GGTGACAGAACCTAAAACCGAG 58.935 50.000 0.00 0.00 37.24 4.63
593 594 3.064931 GTGACAGAACCTAAAACCGAGG 58.935 50.000 0.00 0.00 40.22 4.63
618 619 5.816955 TTTTTGAGATAAAACCAAGGGGG 57.183 39.130 0.00 0.00 44.81 5.40
627 628 3.021263 CCAAGGGGGTAGGGGGTG 61.021 72.222 0.00 0.00 0.00 4.61
628 629 3.021263 CAAGGGGGTAGGGGGTGG 61.021 72.222 0.00 0.00 0.00 4.61
629 630 4.381121 AAGGGGGTAGGGGGTGGG 62.381 72.222 0.00 0.00 0.00 4.61
631 632 4.837421 GGGGGTAGGGGGTGGGAG 62.837 77.778 0.00 0.00 0.00 4.30
632 633 3.702623 GGGGTAGGGGGTGGGAGA 61.703 72.222 0.00 0.00 0.00 3.71
633 634 2.040779 GGGTAGGGGGTGGGAGAG 60.041 72.222 0.00 0.00 0.00 3.20
634 635 2.785703 GGTAGGGGGTGGGAGAGT 59.214 66.667 0.00 0.00 0.00 3.24
635 636 1.082392 GGTAGGGGGTGGGAGAGTT 59.918 63.158 0.00 0.00 0.00 3.01
636 637 1.272554 GGTAGGGGGTGGGAGAGTTG 61.273 65.000 0.00 0.00 0.00 3.16
637 638 0.252558 GTAGGGGGTGGGAGAGTTGA 60.253 60.000 0.00 0.00 0.00 3.18
638 639 0.042731 TAGGGGGTGGGAGAGTTGAG 59.957 60.000 0.00 0.00 0.00 3.02
639 640 2.301738 GGGGGTGGGAGAGTTGAGG 61.302 68.421 0.00 0.00 0.00 3.86
640 641 2.301738 GGGGTGGGAGAGTTGAGGG 61.302 68.421 0.00 0.00 0.00 4.30
641 642 2.301738 GGGTGGGAGAGTTGAGGGG 61.302 68.421 0.00 0.00 0.00 4.79
642 643 2.301738 GGTGGGAGAGTTGAGGGGG 61.302 68.421 0.00 0.00 0.00 5.40
643 644 1.539124 GTGGGAGAGTTGAGGGGGT 60.539 63.158 0.00 0.00 0.00 4.95
644 645 0.252558 GTGGGAGAGTTGAGGGGGTA 60.253 60.000 0.00 0.00 0.00 3.69
645 646 0.042731 TGGGAGAGTTGAGGGGGTAG 59.957 60.000 0.00 0.00 0.00 3.18
646 647 0.338814 GGGAGAGTTGAGGGGGTAGA 59.661 60.000 0.00 0.00 0.00 2.59
647 648 1.273666 GGGAGAGTTGAGGGGGTAGAA 60.274 57.143 0.00 0.00 0.00 2.10
648 649 2.112190 GGAGAGTTGAGGGGGTAGAAG 58.888 57.143 0.00 0.00 0.00 2.85
649 650 2.112190 GAGAGTTGAGGGGGTAGAAGG 58.888 57.143 0.00 0.00 0.00 3.46
650 651 0.542333 GAGTTGAGGGGGTAGAAGGC 59.458 60.000 0.00 0.00 0.00 4.35
651 652 0.178873 AGTTGAGGGGGTAGAAGGCA 60.179 55.000 0.00 0.00 0.00 4.75
652 653 0.696501 GTTGAGGGGGTAGAAGGCAA 59.303 55.000 0.00 0.00 0.00 4.52
653 654 0.991920 TTGAGGGGGTAGAAGGCAAG 59.008 55.000 0.00 0.00 0.00 4.01
654 655 0.118346 TGAGGGGGTAGAAGGCAAGA 59.882 55.000 0.00 0.00 0.00 3.02
655 656 0.833949 GAGGGGGTAGAAGGCAAGAG 59.166 60.000 0.00 0.00 0.00 2.85
656 657 1.224870 GGGGGTAGAAGGCAAGAGC 59.775 63.158 0.00 0.00 41.10 4.09
657 658 1.153349 GGGGTAGAAGGCAAGAGCG 60.153 63.158 0.00 0.00 43.41 5.03
658 659 1.614241 GGGGTAGAAGGCAAGAGCGA 61.614 60.000 0.00 0.00 43.41 4.93
659 660 0.460459 GGGTAGAAGGCAAGAGCGAC 60.460 60.000 0.00 0.00 43.41 5.19
660 661 0.533032 GGTAGAAGGCAAGAGCGACT 59.467 55.000 0.00 0.00 43.41 4.18
661 662 1.470112 GGTAGAAGGCAAGAGCGACTC 60.470 57.143 0.00 0.00 43.41 3.36
662 663 1.474879 GTAGAAGGCAAGAGCGACTCT 59.525 52.381 3.88 3.88 43.37 3.24
663 664 1.840737 AGAAGGCAAGAGCGACTCTA 58.159 50.000 9.33 0.00 40.28 2.43
664 665 1.748493 AGAAGGCAAGAGCGACTCTAG 59.252 52.381 9.33 0.00 40.28 2.43
665 666 0.174617 AAGGCAAGAGCGACTCTAGC 59.825 55.000 9.33 2.83 40.28 3.42
666 667 0.967887 AGGCAAGAGCGACTCTAGCA 60.968 55.000 9.33 0.00 40.28 3.49
667 668 0.527385 GGCAAGAGCGACTCTAGCAG 60.527 60.000 9.33 3.25 40.28 4.24
668 669 1.145162 GCAAGAGCGACTCTAGCAGC 61.145 60.000 9.33 8.14 40.28 5.25
669 670 0.455410 CAAGAGCGACTCTAGCAGCT 59.545 55.000 0.00 0.00 40.28 4.24
671 672 4.328041 AGCGACTCTAGCAGCTCA 57.672 55.556 0.00 0.00 34.48 4.26
672 673 1.806568 AGCGACTCTAGCAGCTCAC 59.193 57.895 0.00 0.00 34.48 3.51
673 674 0.962855 AGCGACTCTAGCAGCTCACA 60.963 55.000 0.00 0.00 34.48 3.58
674 675 0.102120 GCGACTCTAGCAGCTCACAT 59.898 55.000 0.00 0.00 34.19 3.21
675 676 1.837648 CGACTCTAGCAGCTCACATG 58.162 55.000 0.00 0.00 0.00 3.21
676 677 1.535649 CGACTCTAGCAGCTCACATGG 60.536 57.143 0.00 0.00 0.00 3.66
677 678 0.177604 ACTCTAGCAGCTCACATGGC 59.822 55.000 0.00 0.00 0.00 4.40
678 679 0.532417 CTCTAGCAGCTCACATGGCC 60.532 60.000 0.00 0.00 0.00 5.36
679 680 1.222661 CTAGCAGCTCACATGGCCA 59.777 57.895 8.56 8.56 0.00 5.36
680 681 1.078214 TAGCAGCTCACATGGCCAC 60.078 57.895 8.16 0.00 0.00 5.01
681 682 1.556373 TAGCAGCTCACATGGCCACT 61.556 55.000 8.16 0.00 0.00 4.00
682 683 2.404995 GCAGCTCACATGGCCACTC 61.405 63.158 8.16 0.00 0.00 3.51
729 730 1.972075 TGATCTTGACCGTACCCACAA 59.028 47.619 0.00 0.00 0.00 3.33
824 825 4.503123 CCCCGAGAAAAGGCAAAAGAAAAT 60.503 41.667 0.00 0.00 0.00 1.82
991 993 2.286523 CCACCACGCCCTCTCTTCT 61.287 63.158 0.00 0.00 0.00 2.85
993 995 1.077625 ACCACGCCCTCTCTTCTCT 59.922 57.895 0.00 0.00 0.00 3.10
995 997 1.153667 CACGCCCTCTCTTCTCTGC 60.154 63.158 0.00 0.00 0.00 4.26
1168 1170 1.581954 CTCGAGTTCGTGAGTGCCT 59.418 57.895 3.62 0.00 40.80 4.75
1171 1173 1.079750 GAGTTCGTGAGTGCCTCCC 60.080 63.158 0.50 0.00 0.00 4.30
1476 1480 2.712709 GGTAACCTCTCCTGCTTTTCC 58.287 52.381 0.00 0.00 0.00 3.13
1511 1515 5.614324 TTCCCAAGGTGATACAGTGATAG 57.386 43.478 0.00 0.00 0.00 2.08
1638 1647 2.684881 CAAATGTGATACAGCCAGGTCC 59.315 50.000 0.00 0.00 0.00 4.46
1658 1688 2.086869 CGTTCCTCACATTGGAGCAAT 58.913 47.619 0.00 0.00 35.00 3.56
1700 1730 8.527135 TTAGGTGGGTTATGGGATTATAATGA 57.473 34.615 1.78 0.00 0.00 2.57
1857 1887 3.496155 CTTTCTTTCTGCTCCGAATTGC 58.504 45.455 0.00 0.00 0.00 3.56
1861 1891 0.037326 TTCTGCTCCGAATTGCGTCT 60.037 50.000 0.00 0.00 38.67 4.18
1878 4364 2.286294 CGTCTGCATTCTGCTTATCACC 59.714 50.000 0.34 0.00 45.31 4.02
1882 4368 0.041839 CATTCTGCTTATCACCGCGC 60.042 55.000 0.00 0.00 0.00 6.86
2133 4661 8.484641 TCAGATTTCACTAGCTTGTTATTGAG 57.515 34.615 0.00 0.00 0.00 3.02
2550 5460 5.542616 CTGTTTTCCAGTCAGTGATCATC 57.457 43.478 0.00 0.00 36.37 2.92
2633 5589 3.131400 CCTGAACCCAGCTCTAGTAAGAC 59.869 52.174 0.00 0.00 39.07 3.01
2887 6034 5.482175 AGAAGTAACCTCTTCATAGCTGTGT 59.518 40.000 10.52 0.00 44.18 3.72
2888 6035 6.663953 AGAAGTAACCTCTTCATAGCTGTGTA 59.336 38.462 10.52 0.00 44.18 2.90
2900 6047 8.484214 TTCATAGCTGTGTATCTCTTTATCCT 57.516 34.615 10.52 0.00 0.00 3.24
3194 6346 0.395586 AGTGTCCTGTGGCAAAAGCA 60.396 50.000 0.00 0.00 0.00 3.91
3323 9758 2.224042 TGCATCCCAAGTAGCTATGTCG 60.224 50.000 0.00 0.00 0.00 4.35
3501 9936 7.596494 CCATGTTCTTCACATAACTGTCAAAT 58.404 34.615 0.00 0.00 45.06 2.32
3520 9955 9.007901 TGTCAAATGTACATGTTGTATCAATCA 57.992 29.630 9.63 6.45 35.05 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 1.105167 AATGCTGATGCCGTCCATGG 61.105 55.000 4.97 4.97 38.71 3.66
12 13 0.030235 CAATGCTGATGCCGTCCATG 59.970 55.000 0.00 0.00 38.71 3.66
13 14 1.105167 CCAATGCTGATGCCGTCCAT 61.105 55.000 0.00 0.00 38.71 3.41
14 15 1.750018 CCAATGCTGATGCCGTCCA 60.750 57.895 0.00 0.00 38.71 4.02
15 16 1.750399 ACCAATGCTGATGCCGTCC 60.750 57.895 0.00 0.00 38.71 4.79
16 17 1.430632 CACCAATGCTGATGCCGTC 59.569 57.895 0.00 0.00 38.71 4.79
17 18 3.594568 CACCAATGCTGATGCCGT 58.405 55.556 0.00 0.00 38.71 5.68
37 38 1.382695 TCTGCAGCTAGGTACCCCC 60.383 63.158 9.47 0.00 0.00 5.40
38 39 1.403687 CCTCTGCAGCTAGGTACCCC 61.404 65.000 9.47 0.00 0.00 4.95
39 40 1.403687 CCCTCTGCAGCTAGGTACCC 61.404 65.000 17.74 0.00 0.00 3.69
40 41 0.397254 TCCCTCTGCAGCTAGGTACC 60.397 60.000 17.74 2.73 0.00 3.34
41 42 1.036707 CTCCCTCTGCAGCTAGGTAC 58.963 60.000 17.74 0.00 0.00 3.34
42 43 0.631753 ACTCCCTCTGCAGCTAGGTA 59.368 55.000 17.74 3.97 0.00 3.08
43 44 0.686112 GACTCCCTCTGCAGCTAGGT 60.686 60.000 17.74 9.15 0.00 3.08
44 45 1.398958 GGACTCCCTCTGCAGCTAGG 61.399 65.000 9.47 11.83 0.00 3.02
45 46 0.396974 AGGACTCCCTCTGCAGCTAG 60.397 60.000 9.47 1.54 38.86 3.42
46 47 0.685785 CAGGACTCCCTCTGCAGCTA 60.686 60.000 9.47 0.00 42.02 3.32
47 48 1.988956 CAGGACTCCCTCTGCAGCT 60.989 63.158 9.47 0.00 42.02 4.24
48 49 1.958902 CTCAGGACTCCCTCTGCAGC 61.959 65.000 9.47 0.00 42.02 5.25
49 50 0.614415 ACTCAGGACTCCCTCTGCAG 60.614 60.000 7.63 7.63 42.02 4.41
50 51 0.902048 CACTCAGGACTCCCTCTGCA 60.902 60.000 0.00 0.00 42.02 4.41
51 52 1.612395 CCACTCAGGACTCCCTCTGC 61.612 65.000 0.00 0.00 42.02 4.26
52 53 0.040351 TCCACTCAGGACTCCCTCTG 59.960 60.000 0.00 0.00 43.07 3.35
53 54 2.492451 TCCACTCAGGACTCCCTCT 58.508 57.895 0.00 0.00 43.07 3.69
61 62 5.130705 ACTATGTCATAGTCCACTCAGGA 57.869 43.478 18.13 0.00 42.17 3.86
72 73 4.588951 TGCCTACCTTGGACTATGTCATAG 59.411 45.833 16.85 16.85 38.81 2.23
73 74 4.552674 TGCCTACCTTGGACTATGTCATA 58.447 43.478 0.00 0.00 33.68 2.15
74 75 3.384168 TGCCTACCTTGGACTATGTCAT 58.616 45.455 0.00 0.00 33.68 3.06
75 76 2.766263 CTGCCTACCTTGGACTATGTCA 59.234 50.000 0.00 0.00 33.68 3.58
76 77 2.103263 CCTGCCTACCTTGGACTATGTC 59.897 54.545 0.00 0.00 0.00 3.06
77 78 2.119495 CCTGCCTACCTTGGACTATGT 58.881 52.381 0.00 0.00 0.00 2.29
78 79 1.202698 GCCTGCCTACCTTGGACTATG 60.203 57.143 0.00 0.00 0.00 2.23
79 80 1.132500 GCCTGCCTACCTTGGACTAT 58.868 55.000 0.00 0.00 0.00 2.12
80 81 1.327690 CGCCTGCCTACCTTGGACTA 61.328 60.000 0.00 0.00 0.00 2.59
81 82 2.660064 CGCCTGCCTACCTTGGACT 61.660 63.158 0.00 0.00 0.00 3.85
82 83 2.125106 CGCCTGCCTACCTTGGAC 60.125 66.667 0.00 0.00 0.00 4.02
83 84 4.096003 GCGCCTGCCTACCTTGGA 62.096 66.667 0.00 0.00 33.98 3.53
85 86 4.760047 ACGCGCCTGCCTACCTTG 62.760 66.667 5.73 0.00 38.08 3.61
86 87 4.760047 CACGCGCCTGCCTACCTT 62.760 66.667 5.73 0.00 38.08 3.50
89 90 4.436998 ACTCACGCGCCTGCCTAC 62.437 66.667 5.73 0.00 38.08 3.18
90 91 4.435436 CACTCACGCGCCTGCCTA 62.435 66.667 5.73 0.00 38.08 3.93
98 99 4.436998 GGAGACCCCACTCACGCG 62.437 72.222 3.53 3.53 38.51 6.01
99 100 4.436998 CGGAGACCCCACTCACGC 62.437 72.222 0.00 0.00 38.51 5.34
100 101 3.760035 CCGGAGACCCCACTCACG 61.760 72.222 0.00 0.00 38.51 4.35
101 102 1.686110 ATCCGGAGACCCCACTCAC 60.686 63.158 11.34 0.00 38.51 3.51
102 103 1.685765 CATCCGGAGACCCCACTCA 60.686 63.158 11.34 0.00 38.51 3.41
103 104 1.677637 GACATCCGGAGACCCCACTC 61.678 65.000 11.34 0.00 36.31 3.51
104 105 1.686110 GACATCCGGAGACCCCACT 60.686 63.158 11.34 0.00 34.14 4.00
105 106 2.732619 GGACATCCGGAGACCCCAC 61.733 68.421 11.34 0.00 34.14 4.61
106 107 2.365105 GGACATCCGGAGACCCCA 60.365 66.667 11.34 0.00 34.14 4.96
116 117 1.070445 CAGCCATCCTCGGACATCC 59.930 63.158 0.00 0.00 0.00 3.51
117 118 1.070445 CCAGCCATCCTCGGACATC 59.930 63.158 0.00 0.00 0.00 3.06
118 119 2.446848 CCCAGCCATCCTCGGACAT 61.447 63.158 0.00 0.00 0.00 3.06
119 120 3.083349 CCCAGCCATCCTCGGACA 61.083 66.667 0.00 0.00 0.00 4.02
120 121 4.554036 GCCCAGCCATCCTCGGAC 62.554 72.222 0.00 0.00 0.00 4.79
138 139 1.890979 TCGTACCTCTCGGATCGCC 60.891 63.158 0.00 0.00 33.05 5.54
139 140 1.279238 GTCGTACCTCTCGGATCGC 59.721 63.158 0.00 0.00 33.05 4.58
140 141 0.873312 TCGTCGTACCTCTCGGATCG 60.873 60.000 0.00 0.00 0.00 3.69
141 142 0.581053 GTCGTCGTACCTCTCGGATC 59.419 60.000 0.00 0.00 0.00 3.36
142 143 1.150567 CGTCGTCGTACCTCTCGGAT 61.151 60.000 0.00 0.00 0.00 4.18
143 144 1.807165 CGTCGTCGTACCTCTCGGA 60.807 63.158 0.00 0.00 0.00 4.55
144 145 2.699809 CGTCGTCGTACCTCTCGG 59.300 66.667 0.00 0.00 0.00 4.63
154 155 0.026933 CTCCTCATCTGACGTCGTCG 59.973 60.000 19.81 14.36 43.34 5.12
155 156 1.088306 ACTCCTCATCTGACGTCGTC 58.912 55.000 18.51 18.51 0.00 4.20
156 157 1.200252 CAACTCCTCATCTGACGTCGT 59.800 52.381 11.62 0.00 0.00 4.34
157 158 1.468224 CCAACTCCTCATCTGACGTCG 60.468 57.143 11.62 6.07 0.00 5.12
158 159 1.546476 ACCAACTCCTCATCTGACGTC 59.454 52.381 9.11 9.11 0.00 4.34
159 160 1.273606 CACCAACTCCTCATCTGACGT 59.726 52.381 0.00 0.00 0.00 4.34
160 161 1.404717 CCACCAACTCCTCATCTGACG 60.405 57.143 0.00 0.00 0.00 4.35
161 162 1.902508 TCCACCAACTCCTCATCTGAC 59.097 52.381 0.00 0.00 0.00 3.51
162 163 1.902508 GTCCACCAACTCCTCATCTGA 59.097 52.381 0.00 0.00 0.00 3.27
163 164 1.404717 CGTCCACCAACTCCTCATCTG 60.405 57.143 0.00 0.00 0.00 2.90
164 165 0.898320 CGTCCACCAACTCCTCATCT 59.102 55.000 0.00 0.00 0.00 2.90
165 166 0.895530 TCGTCCACCAACTCCTCATC 59.104 55.000 0.00 0.00 0.00 2.92
166 167 1.348064 TTCGTCCACCAACTCCTCAT 58.652 50.000 0.00 0.00 0.00 2.90
167 168 1.070134 CTTTCGTCCACCAACTCCTCA 59.930 52.381 0.00 0.00 0.00 3.86
168 169 1.608283 CCTTTCGTCCACCAACTCCTC 60.608 57.143 0.00 0.00 0.00 3.71
169 170 0.396811 CCTTTCGTCCACCAACTCCT 59.603 55.000 0.00 0.00 0.00 3.69
170 171 0.395312 TCCTTTCGTCCACCAACTCC 59.605 55.000 0.00 0.00 0.00 3.85
171 172 2.143925 CTTCCTTTCGTCCACCAACTC 58.856 52.381 0.00 0.00 0.00 3.01
172 173 1.489230 ACTTCCTTTCGTCCACCAACT 59.511 47.619 0.00 0.00 0.00 3.16
173 174 1.602377 CACTTCCTTTCGTCCACCAAC 59.398 52.381 0.00 0.00 0.00 3.77
174 175 1.476110 CCACTTCCTTTCGTCCACCAA 60.476 52.381 0.00 0.00 0.00 3.67
175 176 0.107831 CCACTTCCTTTCGTCCACCA 59.892 55.000 0.00 0.00 0.00 4.17
176 177 0.605589 CCCACTTCCTTTCGTCCACC 60.606 60.000 0.00 0.00 0.00 4.61
177 178 0.395312 TCCCACTTCCTTTCGTCCAC 59.605 55.000 0.00 0.00 0.00 4.02
178 179 0.685097 CTCCCACTTCCTTTCGTCCA 59.315 55.000 0.00 0.00 0.00 4.02
179 180 0.685660 ACTCCCACTTCCTTTCGTCC 59.314 55.000 0.00 0.00 0.00 4.79
180 181 2.094130 CCTACTCCCACTTCCTTTCGTC 60.094 54.545 0.00 0.00 0.00 4.20
181 182 1.900486 CCTACTCCCACTTCCTTTCGT 59.100 52.381 0.00 0.00 0.00 3.85
182 183 1.207329 CCCTACTCCCACTTCCTTTCG 59.793 57.143 0.00 0.00 0.00 3.46
183 184 1.560146 CCCCTACTCCCACTTCCTTTC 59.440 57.143 0.00 0.00 0.00 2.62
184 185 1.670059 CCCCTACTCCCACTTCCTTT 58.330 55.000 0.00 0.00 0.00 3.11
185 186 0.914902 GCCCCTACTCCCACTTCCTT 60.915 60.000 0.00 0.00 0.00 3.36
186 187 1.307084 GCCCCTACTCCCACTTCCT 60.307 63.158 0.00 0.00 0.00 3.36
187 188 2.732619 CGCCCCTACTCCCACTTCC 61.733 68.421 0.00 0.00 0.00 3.46
188 189 1.262640 TTCGCCCCTACTCCCACTTC 61.263 60.000 0.00 0.00 0.00 3.01
189 190 1.229400 TTCGCCCCTACTCCCACTT 60.229 57.895 0.00 0.00 0.00 3.16
190 191 1.686110 CTTCGCCCCTACTCCCACT 60.686 63.158 0.00 0.00 0.00 4.00
191 192 1.988406 ACTTCGCCCCTACTCCCAC 60.988 63.158 0.00 0.00 0.00 4.61
192 193 1.987855 CACTTCGCCCCTACTCCCA 60.988 63.158 0.00 0.00 0.00 4.37
193 194 2.732619 CCACTTCGCCCCTACTCCC 61.733 68.421 0.00 0.00 0.00 4.30
194 195 1.262640 TTCCACTTCGCCCCTACTCC 61.263 60.000 0.00 0.00 0.00 3.85
195 196 0.175989 CTTCCACTTCGCCCCTACTC 59.824 60.000 0.00 0.00 0.00 2.59
196 197 0.252103 TCTTCCACTTCGCCCCTACT 60.252 55.000 0.00 0.00 0.00 2.57
197 198 0.611714 TTCTTCCACTTCGCCCCTAC 59.388 55.000 0.00 0.00 0.00 3.18
198 199 1.354101 TTTCTTCCACTTCGCCCCTA 58.646 50.000 0.00 0.00 0.00 3.53
199 200 0.476771 TTTTCTTCCACTTCGCCCCT 59.523 50.000 0.00 0.00 0.00 4.79
200 201 0.881796 CTTTTCTTCCACTTCGCCCC 59.118 55.000 0.00 0.00 0.00 5.80
201 202 0.881796 CCTTTTCTTCCACTTCGCCC 59.118 55.000 0.00 0.00 0.00 6.13
202 203 0.881796 CCCTTTTCTTCCACTTCGCC 59.118 55.000 0.00 0.00 0.00 5.54
203 204 0.881796 CCCCTTTTCTTCCACTTCGC 59.118 55.000 0.00 0.00 0.00 4.70
204 205 2.427506 CTCCCCTTTTCTTCCACTTCG 58.572 52.381 0.00 0.00 0.00 3.79
205 206 2.163509 GCTCCCCTTTTCTTCCACTTC 58.836 52.381 0.00 0.00 0.00 3.01
206 207 1.545651 CGCTCCCCTTTTCTTCCACTT 60.546 52.381 0.00 0.00 0.00 3.16
207 208 0.036875 CGCTCCCCTTTTCTTCCACT 59.963 55.000 0.00 0.00 0.00 4.00
208 209 0.960861 CCGCTCCCCTTTTCTTCCAC 60.961 60.000 0.00 0.00 0.00 4.02
209 210 1.378762 CCGCTCCCCTTTTCTTCCA 59.621 57.895 0.00 0.00 0.00 3.53
210 211 1.378646 CCCGCTCCCCTTTTCTTCC 60.379 63.158 0.00 0.00 0.00 3.46
211 212 0.393132 CTCCCGCTCCCCTTTTCTTC 60.393 60.000 0.00 0.00 0.00 2.87
212 213 1.685820 CTCCCGCTCCCCTTTTCTT 59.314 57.895 0.00 0.00 0.00 2.52
213 214 2.301738 CCTCCCGCTCCCCTTTTCT 61.302 63.158 0.00 0.00 0.00 2.52
214 215 1.848886 TTCCTCCCGCTCCCCTTTTC 61.849 60.000 0.00 0.00 0.00 2.29
215 216 1.850755 TTCCTCCCGCTCCCCTTTT 60.851 57.895 0.00 0.00 0.00 2.27
216 217 2.204090 TTCCTCCCGCTCCCCTTT 60.204 61.111 0.00 0.00 0.00 3.11
217 218 2.553438 ATCTTCCTCCCGCTCCCCTT 62.553 60.000 0.00 0.00 0.00 3.95
218 219 2.553438 AATCTTCCTCCCGCTCCCCT 62.553 60.000 0.00 0.00 0.00 4.79
219 220 1.636769 AAATCTTCCTCCCGCTCCCC 61.637 60.000 0.00 0.00 0.00 4.81
220 221 0.464554 CAAATCTTCCTCCCGCTCCC 60.465 60.000 0.00 0.00 0.00 4.30
221 222 0.541863 TCAAATCTTCCTCCCGCTCC 59.458 55.000 0.00 0.00 0.00 4.70
222 223 1.208293 ACTCAAATCTTCCTCCCGCTC 59.792 52.381 0.00 0.00 0.00 5.03
223 224 1.065854 CACTCAAATCTTCCTCCCGCT 60.066 52.381 0.00 0.00 0.00 5.52
224 225 1.339151 ACACTCAAATCTTCCTCCCGC 60.339 52.381 0.00 0.00 0.00 6.13
225 226 2.289694 ACACACTCAAATCTTCCTCCCG 60.290 50.000 0.00 0.00 0.00 5.14
226 227 3.339141 GACACACTCAAATCTTCCTCCC 58.661 50.000 0.00 0.00 0.00 4.30
227 228 2.996621 CGACACACTCAAATCTTCCTCC 59.003 50.000 0.00 0.00 0.00 4.30
228 229 3.914312 TCGACACACTCAAATCTTCCTC 58.086 45.455 0.00 0.00 0.00 3.71
229 230 3.306364 CCTCGACACACTCAAATCTTCCT 60.306 47.826 0.00 0.00 0.00 3.36
230 231 2.996621 CCTCGACACACTCAAATCTTCC 59.003 50.000 0.00 0.00 0.00 3.46
231 232 2.996621 CCCTCGACACACTCAAATCTTC 59.003 50.000 0.00 0.00 0.00 2.87
232 233 2.872038 GCCCTCGACACACTCAAATCTT 60.872 50.000 0.00 0.00 0.00 2.40
233 234 1.338200 GCCCTCGACACACTCAAATCT 60.338 52.381 0.00 0.00 0.00 2.40
234 235 1.079503 GCCCTCGACACACTCAAATC 58.920 55.000 0.00 0.00 0.00 2.17
235 236 0.670546 CGCCCTCGACACACTCAAAT 60.671 55.000 0.00 0.00 38.10 2.32
236 237 1.300620 CGCCCTCGACACACTCAAA 60.301 57.895 0.00 0.00 38.10 2.69
237 238 2.338620 CGCCCTCGACACACTCAA 59.661 61.111 0.00 0.00 38.10 3.02
238 239 2.910479 ACGCCCTCGACACACTCA 60.910 61.111 0.00 0.00 39.41 3.41
239 240 2.126424 GACGCCCTCGACACACTC 60.126 66.667 0.00 0.00 39.41 3.51
240 241 4.039357 CGACGCCCTCGACACACT 62.039 66.667 0.00 0.00 46.14 3.55
241 242 2.845861 CTACGACGCCCTCGACACAC 62.846 65.000 5.49 0.00 46.14 3.82
242 243 2.669229 TACGACGCCCTCGACACA 60.669 61.111 5.49 0.00 46.14 3.72
243 244 2.099831 CTACGACGCCCTCGACAC 59.900 66.667 5.49 0.00 46.14 3.67
244 245 2.359107 ACTACGACGCCCTCGACA 60.359 61.111 5.49 0.00 46.14 4.35
245 246 2.402787 GACTACGACGCCCTCGAC 59.597 66.667 5.49 0.00 46.14 4.20
246 247 1.960040 TAGGACTACGACGCCCTCGA 61.960 60.000 5.49 0.00 46.14 4.04
248 249 1.165284 CCTAGGACTACGACGCCCTC 61.165 65.000 1.05 0.00 0.00 4.30
249 250 1.153005 CCTAGGACTACGACGCCCT 60.153 63.158 1.05 0.00 0.00 5.19
250 251 1.452833 ACCTAGGACTACGACGCCC 60.453 63.158 17.98 0.00 0.00 6.13
251 252 1.722636 CCACCTAGGACTACGACGCC 61.723 65.000 17.98 0.00 41.22 5.68
252 253 1.726265 CCACCTAGGACTACGACGC 59.274 63.158 17.98 0.00 41.22 5.19
253 254 0.747283 AGCCACCTAGGACTACGACG 60.747 60.000 17.98 0.00 41.22 5.12
254 255 0.739561 CAGCCACCTAGGACTACGAC 59.260 60.000 17.98 0.00 41.22 4.34
255 256 0.395311 CCAGCCACCTAGGACTACGA 60.395 60.000 17.98 0.00 41.22 3.43
256 257 0.683504 ACCAGCCACCTAGGACTACG 60.684 60.000 17.98 5.96 41.22 3.51
257 258 0.824759 CACCAGCCACCTAGGACTAC 59.175 60.000 17.98 1.53 41.22 2.73
258 259 0.412244 ACACCAGCCACCTAGGACTA 59.588 55.000 17.98 0.00 41.22 2.59
259 260 0.905337 GACACCAGCCACCTAGGACT 60.905 60.000 17.98 6.85 41.22 3.85
260 261 1.597461 GACACCAGCCACCTAGGAC 59.403 63.158 17.98 4.32 41.22 3.85
261 262 1.612442 GGACACCAGCCACCTAGGA 60.612 63.158 17.98 0.00 41.22 2.94
262 263 2.990479 GGACACCAGCCACCTAGG 59.010 66.667 7.41 7.41 41.84 3.02
263 264 2.579201 CGGACACCAGCCACCTAG 59.421 66.667 0.00 0.00 0.00 3.02
264 265 3.000819 CCGGACACCAGCCACCTA 61.001 66.667 0.00 0.00 0.00 3.08
265 266 4.954118 TCCGGACACCAGCCACCT 62.954 66.667 0.00 0.00 0.00 4.00
266 267 4.699522 GTCCGGACACCAGCCACC 62.700 72.222 29.75 0.00 0.00 4.61
267 268 3.591254 GAGTCCGGACACCAGCCAC 62.591 68.421 35.00 6.70 0.00 5.01
268 269 3.311110 GAGTCCGGACACCAGCCA 61.311 66.667 35.00 0.00 0.00 4.75
269 270 4.083862 GGAGTCCGGACACCAGCC 62.084 72.222 37.12 24.44 41.01 4.85
270 271 4.083862 GGGAGTCCGGACACCAGC 62.084 72.222 40.28 26.27 42.77 4.85
280 281 3.978571 GAGGGCTTTGCGGGAGTCC 62.979 68.421 0.00 0.00 39.22 3.85
281 282 1.614241 TAGAGGGCTTTGCGGGAGTC 61.614 60.000 0.00 0.00 0.00 3.36
282 283 1.198759 TTAGAGGGCTTTGCGGGAGT 61.199 55.000 0.00 0.00 0.00 3.85
283 284 0.744771 GTTAGAGGGCTTTGCGGGAG 60.745 60.000 0.00 0.00 0.00 4.30
284 285 1.198759 AGTTAGAGGGCTTTGCGGGA 61.199 55.000 0.00 0.00 0.00 5.14
285 286 0.322546 AAGTTAGAGGGCTTTGCGGG 60.323 55.000 0.00 0.00 0.00 6.13
286 287 0.804989 CAAGTTAGAGGGCTTTGCGG 59.195 55.000 0.00 0.00 0.00 5.69
287 288 0.169009 GCAAGTTAGAGGGCTTTGCG 59.831 55.000 0.00 0.00 0.00 4.85
288 289 1.539157 AGCAAGTTAGAGGGCTTTGC 58.461 50.000 0.00 0.00 31.34 3.68
289 290 2.489722 GGAAGCAAGTTAGAGGGCTTTG 59.510 50.000 0.00 0.00 45.81 2.77
290 291 2.108250 TGGAAGCAAGTTAGAGGGCTTT 59.892 45.455 0.00 0.00 45.81 3.51
292 293 1.362224 TGGAAGCAAGTTAGAGGGCT 58.638 50.000 0.00 0.00 38.45 5.19
293 294 2.200373 TTGGAAGCAAGTTAGAGGGC 57.800 50.000 0.00 0.00 0.00 5.19
294 295 3.445096 CCAATTGGAAGCAAGTTAGAGGG 59.555 47.826 20.50 0.00 37.39 4.30
295 296 3.445096 CCCAATTGGAAGCAAGTTAGAGG 59.555 47.826 26.60 0.00 37.39 3.69
296 297 3.445096 CCCCAATTGGAAGCAAGTTAGAG 59.555 47.826 26.60 3.86 37.39 2.43
297 298 3.075283 TCCCCAATTGGAAGCAAGTTAGA 59.925 43.478 26.60 3.80 37.39 2.10
298 299 3.430453 TCCCCAATTGGAAGCAAGTTAG 58.570 45.455 26.60 4.60 37.39 2.34
299 300 3.534357 TCCCCAATTGGAAGCAAGTTA 57.466 42.857 26.60 0.00 37.39 2.24
300 301 2.397044 TCCCCAATTGGAAGCAAGTT 57.603 45.000 26.60 0.00 37.39 2.66
301 302 2.397044 TTCCCCAATTGGAAGCAAGT 57.603 45.000 26.60 0.00 39.48 3.16
327 328 3.769844 TCCAAAGTAAGTGGTGGCAAAAA 59.230 39.130 0.00 0.00 37.43 1.94
328 329 3.131400 GTCCAAAGTAAGTGGTGGCAAAA 59.869 43.478 0.00 0.00 37.43 2.44
329 330 2.691011 GTCCAAAGTAAGTGGTGGCAAA 59.309 45.455 0.00 0.00 37.43 3.68
330 331 2.092103 AGTCCAAAGTAAGTGGTGGCAA 60.092 45.455 0.00 0.00 37.43 4.52
331 332 1.493022 AGTCCAAAGTAAGTGGTGGCA 59.507 47.619 0.00 0.00 37.43 4.92
332 333 2.271944 AGTCCAAAGTAAGTGGTGGC 57.728 50.000 0.00 0.00 37.43 5.01
333 334 4.204012 TCAAAGTCCAAAGTAAGTGGTGG 58.796 43.478 0.00 0.00 37.43 4.61
334 335 7.687941 ATATCAAAGTCCAAAGTAAGTGGTG 57.312 36.000 0.00 0.00 37.43 4.17
335 336 8.706322 AAATATCAAAGTCCAAAGTAAGTGGT 57.294 30.769 0.00 0.00 37.43 4.16
336 337 9.410556 CAAAATATCAAAGTCCAAAGTAAGTGG 57.589 33.333 0.00 0.00 37.51 4.00
337 338 8.915654 GCAAAATATCAAAGTCCAAAGTAAGTG 58.084 33.333 0.00 0.00 0.00 3.16
338 339 8.088365 GGCAAAATATCAAAGTCCAAAGTAAGT 58.912 33.333 0.00 0.00 0.00 2.24
339 340 8.087750 TGGCAAAATATCAAAGTCCAAAGTAAG 58.912 33.333 0.00 0.00 0.00 2.34
340 341 7.870445 GTGGCAAAATATCAAAGTCCAAAGTAA 59.130 33.333 0.00 0.00 0.00 2.24
341 342 7.232534 AGTGGCAAAATATCAAAGTCCAAAGTA 59.767 33.333 0.00 0.00 0.00 2.24
342 343 6.041979 AGTGGCAAAATATCAAAGTCCAAAGT 59.958 34.615 0.00 0.00 0.00 2.66
343 344 6.458210 AGTGGCAAAATATCAAAGTCCAAAG 58.542 36.000 0.00 0.00 0.00 2.77
344 345 6.418057 AGTGGCAAAATATCAAAGTCCAAA 57.582 33.333 0.00 0.00 0.00 3.28
345 346 6.719370 AGTAGTGGCAAAATATCAAAGTCCAA 59.281 34.615 0.00 0.00 0.00 3.53
346 347 6.245408 AGTAGTGGCAAAATATCAAAGTCCA 58.755 36.000 0.00 0.00 0.00 4.02
347 348 6.759497 AGTAGTGGCAAAATATCAAAGTCC 57.241 37.500 0.00 0.00 0.00 3.85
348 349 8.082242 ACAAAGTAGTGGCAAAATATCAAAGTC 58.918 33.333 0.00 0.00 0.00 3.01
349 350 7.951591 ACAAAGTAGTGGCAAAATATCAAAGT 58.048 30.769 0.00 0.00 0.00 2.66
350 351 9.906660 TTACAAAGTAGTGGCAAAATATCAAAG 57.093 29.630 0.00 0.00 0.00 2.77
359 360 9.906660 CTTATCAAATTACAAAGTAGTGGCAAA 57.093 29.630 0.00 0.00 0.00 3.68
360 361 9.073475 ACTTATCAAATTACAAAGTAGTGGCAA 57.927 29.630 0.00 0.00 0.00 4.52
361 362 8.630054 ACTTATCAAATTACAAAGTAGTGGCA 57.370 30.769 0.00 0.00 0.00 4.92
362 363 9.908152 AAACTTATCAAATTACAAAGTAGTGGC 57.092 29.630 0.00 0.00 30.51 5.01
371 372 8.893884 CGCGTGTAAAAACTTATCAAATTACAA 58.106 29.630 0.00 0.00 35.68 2.41
372 373 7.534578 CCGCGTGTAAAAACTTATCAAATTACA 59.465 33.333 4.92 0.00 32.56 2.41
373 374 7.745594 TCCGCGTGTAAAAACTTATCAAATTAC 59.254 33.333 4.92 0.00 0.00 1.89
374 375 7.804712 TCCGCGTGTAAAAACTTATCAAATTA 58.195 30.769 4.92 0.00 0.00 1.40
375 376 6.670233 TCCGCGTGTAAAAACTTATCAAATT 58.330 32.000 4.92 0.00 0.00 1.82
376 377 6.243811 TCCGCGTGTAAAAACTTATCAAAT 57.756 33.333 4.92 0.00 0.00 2.32
377 378 5.670149 TCCGCGTGTAAAAACTTATCAAA 57.330 34.783 4.92 0.00 0.00 2.69
378 379 5.866335 ATCCGCGTGTAAAAACTTATCAA 57.134 34.783 4.92 0.00 0.00 2.57
379 380 6.964741 TTATCCGCGTGTAAAAACTTATCA 57.035 33.333 4.92 0.00 0.00 2.15
380 381 6.849305 CCATTATCCGCGTGTAAAAACTTATC 59.151 38.462 4.92 0.00 0.00 1.75
381 382 6.238538 CCCATTATCCGCGTGTAAAAACTTAT 60.239 38.462 4.92 0.00 0.00 1.73
382 383 5.064962 CCCATTATCCGCGTGTAAAAACTTA 59.935 40.000 4.92 0.00 0.00 2.24
383 384 4.142556 CCCATTATCCGCGTGTAAAAACTT 60.143 41.667 4.92 0.00 0.00 2.66
384 385 3.375922 CCCATTATCCGCGTGTAAAAACT 59.624 43.478 4.92 0.00 0.00 2.66
385 386 3.687200 CCCATTATCCGCGTGTAAAAAC 58.313 45.455 4.92 0.00 0.00 2.43
386 387 2.097791 GCCCATTATCCGCGTGTAAAAA 59.902 45.455 4.92 0.00 0.00 1.94
387 388 1.671845 GCCCATTATCCGCGTGTAAAA 59.328 47.619 4.92 0.00 0.00 1.52
388 389 1.301423 GCCCATTATCCGCGTGTAAA 58.699 50.000 4.92 0.00 0.00 2.01
389 390 0.876777 CGCCCATTATCCGCGTGTAA 60.877 55.000 4.92 3.99 40.99 2.41
390 391 1.300311 CGCCCATTATCCGCGTGTA 60.300 57.895 4.92 0.00 40.99 2.90
391 392 2.581208 TTCGCCCATTATCCGCGTGT 62.581 55.000 4.92 0.00 45.85 4.49
392 393 1.227999 ATTCGCCCATTATCCGCGTG 61.228 55.000 4.92 0.00 45.85 5.34
393 394 0.319083 TATTCGCCCATTATCCGCGT 59.681 50.000 4.92 0.00 45.85 6.01
395 396 2.609459 CTGATATTCGCCCATTATCCGC 59.391 50.000 0.00 0.00 0.00 5.54
396 397 2.609459 GCTGATATTCGCCCATTATCCG 59.391 50.000 0.00 0.00 0.00 4.18
397 398 3.873952 GAGCTGATATTCGCCCATTATCC 59.126 47.826 0.00 0.00 0.00 2.59
398 399 4.507710 TGAGCTGATATTCGCCCATTATC 58.492 43.478 0.00 0.00 0.00 1.75
399 400 4.558226 TGAGCTGATATTCGCCCATTAT 57.442 40.909 0.00 0.00 0.00 1.28
400 401 4.318332 CTTGAGCTGATATTCGCCCATTA 58.682 43.478 0.00 0.00 0.00 1.90
401 402 2.936919 TGAGCTGATATTCGCCCATT 57.063 45.000 0.00 0.00 0.00 3.16
402 403 2.551721 CCTTGAGCTGATATTCGCCCAT 60.552 50.000 0.00 0.00 0.00 4.00
403 404 1.202687 CCTTGAGCTGATATTCGCCCA 60.203 52.381 0.00 0.00 0.00 5.36
404 405 1.070758 TCCTTGAGCTGATATTCGCCC 59.929 52.381 0.00 0.00 0.00 6.13
405 406 2.411904 CTCCTTGAGCTGATATTCGCC 58.588 52.381 0.00 0.00 0.00 5.54
406 407 2.224161 ACCTCCTTGAGCTGATATTCGC 60.224 50.000 0.00 0.00 0.00 4.70
407 408 3.742433 ACCTCCTTGAGCTGATATTCG 57.258 47.619 0.00 0.00 0.00 3.34
408 409 6.169800 GGATTACCTCCTTGAGCTGATATTC 58.830 44.000 0.00 0.00 41.29 1.75
409 410 5.279708 CGGATTACCTCCTTGAGCTGATATT 60.280 44.000 0.00 0.00 42.47 1.28
410 411 4.221703 CGGATTACCTCCTTGAGCTGATAT 59.778 45.833 0.00 0.00 42.47 1.63
411 412 3.574396 CGGATTACCTCCTTGAGCTGATA 59.426 47.826 0.00 0.00 42.47 2.15
412 413 2.366916 CGGATTACCTCCTTGAGCTGAT 59.633 50.000 0.00 0.00 42.47 2.90
413 414 1.757118 CGGATTACCTCCTTGAGCTGA 59.243 52.381 0.00 0.00 42.47 4.26
414 415 1.757118 TCGGATTACCTCCTTGAGCTG 59.243 52.381 0.00 0.00 42.47 4.24
415 416 2.035632 CTCGGATTACCTCCTTGAGCT 58.964 52.381 0.00 0.00 42.47 4.09
416 417 1.539280 GCTCGGATTACCTCCTTGAGC 60.539 57.143 5.71 5.71 44.83 4.26
417 418 1.269309 CGCTCGGATTACCTCCTTGAG 60.269 57.143 0.00 0.00 42.47 3.02
418 419 0.744874 CGCTCGGATTACCTCCTTGA 59.255 55.000 0.00 0.00 42.47 3.02
419 420 0.744874 TCGCTCGGATTACCTCCTTG 59.255 55.000 0.00 0.00 42.47 3.61
420 421 1.136500 GTTCGCTCGGATTACCTCCTT 59.864 52.381 0.00 0.00 42.47 3.36
421 422 0.745468 GTTCGCTCGGATTACCTCCT 59.255 55.000 0.00 0.00 42.47 3.69
422 423 0.594284 CGTTCGCTCGGATTACCTCC 60.594 60.000 0.00 0.00 41.07 4.30
423 424 0.100146 ACGTTCGCTCGGATTACCTC 59.900 55.000 4.40 0.00 34.94 3.85
424 425 0.529378 AACGTTCGCTCGGATTACCT 59.471 50.000 0.00 0.00 34.94 3.08
425 426 1.060122 CAAACGTTCGCTCGGATTACC 59.940 52.381 0.00 0.00 34.94 2.85
426 427 1.723003 ACAAACGTTCGCTCGGATTAC 59.277 47.619 0.00 0.00 34.94 1.89
427 428 2.068837 ACAAACGTTCGCTCGGATTA 57.931 45.000 0.00 0.00 34.94 1.75
428 429 1.193874 GAACAAACGTTCGCTCGGATT 59.806 47.619 0.00 0.00 33.91 3.01
429 430 0.788391 GAACAAACGTTCGCTCGGAT 59.212 50.000 0.00 0.00 33.91 4.18
430 431 1.216941 GGAACAAACGTTCGCTCGGA 61.217 55.000 0.00 0.00 43.16 4.55
431 432 1.203313 GGAACAAACGTTCGCTCGG 59.797 57.895 0.00 0.00 43.16 4.63
432 433 4.792125 GGAACAAACGTTCGCTCG 57.208 55.556 0.00 0.00 43.16 5.03
436 437 1.335506 CCATTGGGGAACAAACGTTCG 60.336 52.381 0.00 0.00 43.16 3.95
437 438 2.432206 CCATTGGGGAACAAACGTTC 57.568 50.000 0.00 0.00 43.46 3.95
449 450 1.006998 TGTTCATCCCTTCCCATTGGG 59.993 52.381 16.26 16.26 46.11 4.12
450 451 2.497273 GTTGTTCATCCCTTCCCATTGG 59.503 50.000 0.00 0.00 0.00 3.16
451 452 3.164268 TGTTGTTCATCCCTTCCCATTG 58.836 45.455 0.00 0.00 0.00 2.82
452 453 3.541242 TGTTGTTCATCCCTTCCCATT 57.459 42.857 0.00 0.00 0.00 3.16
453 454 3.763557 ATGTTGTTCATCCCTTCCCAT 57.236 42.857 0.00 0.00 29.76 4.00
454 455 3.541242 AATGTTGTTCATCCCTTCCCA 57.459 42.857 0.00 0.00 35.48 4.37
455 456 4.283212 TGAAAATGTTGTTCATCCCTTCCC 59.717 41.667 0.00 0.00 35.48 3.97
456 457 5.467035 TGAAAATGTTGTTCATCCCTTCC 57.533 39.130 0.00 0.00 35.48 3.46
457 458 7.116805 GTGAATGAAAATGTTGTTCATCCCTTC 59.883 37.037 0.46 0.00 43.32 3.46
458 459 6.930722 GTGAATGAAAATGTTGTTCATCCCTT 59.069 34.615 0.46 0.00 43.32 3.95
459 460 6.268387 AGTGAATGAAAATGTTGTTCATCCCT 59.732 34.615 0.46 0.00 43.32 4.20
460 461 6.458210 AGTGAATGAAAATGTTGTTCATCCC 58.542 36.000 0.46 0.00 43.32 3.85
461 462 9.474920 TTTAGTGAATGAAAATGTTGTTCATCC 57.525 29.630 0.46 0.00 43.32 3.51
473 474 9.498307 GTCGTTTCTTCTTTTAGTGAATGAAAA 57.502 29.630 0.00 0.00 32.84 2.29
474 475 8.889717 AGTCGTTTCTTCTTTTAGTGAATGAAA 58.110 29.630 0.00 0.00 32.84 2.69
475 476 8.433421 AGTCGTTTCTTCTTTTAGTGAATGAA 57.567 30.769 0.00 0.00 32.43 2.57
476 477 7.926555 AGAGTCGTTTCTTCTTTTAGTGAATGA 59.073 33.333 0.00 0.00 0.00 2.57
477 478 8.077836 AGAGTCGTTTCTTCTTTTAGTGAATG 57.922 34.615 0.00 0.00 0.00 2.67
478 479 7.926555 TGAGAGTCGTTTCTTCTTTTAGTGAAT 59.073 33.333 0.00 0.00 0.00 2.57
479 480 7.222224 GTGAGAGTCGTTTCTTCTTTTAGTGAA 59.778 37.037 0.00 0.00 0.00 3.18
480 481 6.696148 GTGAGAGTCGTTTCTTCTTTTAGTGA 59.304 38.462 0.00 0.00 0.00 3.41
481 482 6.475727 TGTGAGAGTCGTTTCTTCTTTTAGTG 59.524 38.462 0.00 0.00 0.00 2.74
482 483 6.570692 TGTGAGAGTCGTTTCTTCTTTTAGT 58.429 36.000 0.00 0.00 0.00 2.24
483 484 6.918569 TCTGTGAGAGTCGTTTCTTCTTTTAG 59.081 38.462 0.00 0.00 0.00 1.85
484 485 6.802608 TCTGTGAGAGTCGTTTCTTCTTTTA 58.197 36.000 0.00 0.00 0.00 1.52
485 486 5.661458 TCTGTGAGAGTCGTTTCTTCTTTT 58.339 37.500 0.00 0.00 0.00 2.27
486 487 5.067936 TCTCTGTGAGAGTCGTTTCTTCTTT 59.932 40.000 0.00 0.00 42.83 2.52
487 488 4.580995 TCTCTGTGAGAGTCGTTTCTTCTT 59.419 41.667 0.00 0.00 42.83 2.52
488 489 4.138290 TCTCTGTGAGAGTCGTTTCTTCT 58.862 43.478 0.00 0.00 42.83 2.85
489 490 4.491234 TCTCTGTGAGAGTCGTTTCTTC 57.509 45.455 0.00 0.00 42.83 2.87
490 491 4.321601 CCATCTCTGTGAGAGTCGTTTCTT 60.322 45.833 3.64 0.00 42.26 2.52
491 492 3.192422 CCATCTCTGTGAGAGTCGTTTCT 59.808 47.826 3.64 0.00 42.26 2.52
492 493 3.506810 CCATCTCTGTGAGAGTCGTTTC 58.493 50.000 3.64 0.00 42.26 2.78
493 494 2.353208 GCCATCTCTGTGAGAGTCGTTT 60.353 50.000 3.64 0.00 42.26 3.60
494 495 1.203523 GCCATCTCTGTGAGAGTCGTT 59.796 52.381 3.64 0.00 42.26 3.85
495 496 0.814457 GCCATCTCTGTGAGAGTCGT 59.186 55.000 3.64 0.00 42.26 4.34
496 497 0.248417 CGCCATCTCTGTGAGAGTCG 60.248 60.000 3.64 3.36 42.26 4.18
497 498 1.098869 TCGCCATCTCTGTGAGAGTC 58.901 55.000 3.64 0.00 42.26 3.36
498 499 1.408340 CATCGCCATCTCTGTGAGAGT 59.592 52.381 3.64 0.00 42.26 3.24
499 500 1.868930 GCATCGCCATCTCTGTGAGAG 60.869 57.143 3.64 0.00 42.26 3.20
500 501 0.103755 GCATCGCCATCTCTGTGAGA 59.896 55.000 0.00 0.00 43.20 3.27
501 502 0.104487 AGCATCGCCATCTCTGTGAG 59.896 55.000 0.00 0.00 0.00 3.51
502 503 0.179092 CAGCATCGCCATCTCTGTGA 60.179 55.000 0.00 0.00 0.00 3.58
503 504 1.158484 CCAGCATCGCCATCTCTGTG 61.158 60.000 0.00 0.00 0.00 3.66
504 505 1.145598 CCAGCATCGCCATCTCTGT 59.854 57.895 0.00 0.00 0.00 3.41
505 506 0.179065 TTCCAGCATCGCCATCTCTG 60.179 55.000 0.00 0.00 0.00 3.35
506 507 0.106335 CTTCCAGCATCGCCATCTCT 59.894 55.000 0.00 0.00 0.00 3.10
507 508 1.505477 GCTTCCAGCATCGCCATCTC 61.505 60.000 0.00 0.00 41.89 2.75
508 509 1.525535 GCTTCCAGCATCGCCATCT 60.526 57.895 0.00 0.00 41.89 2.90
509 510 2.890109 CGCTTCCAGCATCGCCATC 61.890 63.158 0.00 0.00 42.58 3.51
510 511 2.898840 CGCTTCCAGCATCGCCAT 60.899 61.111 0.00 0.00 42.58 4.40
513 514 3.869272 CACCGCTTCCAGCATCGC 61.869 66.667 0.00 0.00 42.58 4.58
514 515 2.034879 AACACCGCTTCCAGCATCG 61.035 57.895 0.00 0.00 42.58 3.84
515 516 1.503542 CAACACCGCTTCCAGCATC 59.496 57.895 0.00 0.00 42.58 3.91
516 517 1.973281 CCAACACCGCTTCCAGCAT 60.973 57.895 0.00 0.00 42.58 3.79
517 518 2.594303 CCAACACCGCTTCCAGCA 60.594 61.111 0.00 0.00 42.58 4.41
518 519 4.043200 GCCAACACCGCTTCCAGC 62.043 66.667 0.00 0.00 38.02 4.85
519 520 2.281761 AGCCAACACCGCTTCCAG 60.282 61.111 0.00 0.00 30.57 3.86
520 521 2.594303 CAGCCAACACCGCTTCCA 60.594 61.111 0.00 0.00 33.17 3.53
521 522 3.365265 CCAGCCAACACCGCTTCC 61.365 66.667 0.00 0.00 33.17 3.46
522 523 2.281484 TCCAGCCAACACCGCTTC 60.281 61.111 0.00 0.00 33.17 3.86
523 524 2.281761 CTCCAGCCAACACCGCTT 60.282 61.111 0.00 0.00 33.17 4.68
525 526 3.605749 TAGCTCCAGCCAACACCGC 62.606 63.158 0.00 0.00 43.38 5.68
526 527 1.741770 GTAGCTCCAGCCAACACCG 60.742 63.158 0.00 0.00 43.38 4.94
527 528 1.741770 CGTAGCTCCAGCCAACACC 60.742 63.158 0.00 0.00 43.38 4.16
528 529 0.108138 ATCGTAGCTCCAGCCAACAC 60.108 55.000 0.00 0.00 43.38 3.32
529 530 0.108186 CATCGTAGCTCCAGCCAACA 60.108 55.000 0.00 0.00 43.38 3.33
530 531 0.175760 TCATCGTAGCTCCAGCCAAC 59.824 55.000 0.00 0.00 43.38 3.77
531 532 0.175760 GTCATCGTAGCTCCAGCCAA 59.824 55.000 0.00 0.00 43.38 4.52
532 533 0.684479 AGTCATCGTAGCTCCAGCCA 60.684 55.000 0.00 0.00 43.38 4.75
533 534 0.031449 GAGTCATCGTAGCTCCAGCC 59.969 60.000 0.00 0.00 43.38 4.85
534 535 0.317436 CGAGTCATCGTAGCTCCAGC 60.317 60.000 0.00 0.00 44.09 4.85
535 536 3.835686 CGAGTCATCGTAGCTCCAG 57.164 57.895 0.00 0.00 44.09 3.86
545 546 3.376540 GTGACAGCCTTATCGAGTCATC 58.623 50.000 4.93 0.00 40.80 2.92
546 547 2.101582 GGTGACAGCCTTATCGAGTCAT 59.898 50.000 4.93 0.00 40.80 3.06
547 548 1.476891 GGTGACAGCCTTATCGAGTCA 59.523 52.381 0.00 0.00 36.92 3.41
548 549 1.534175 CGGTGACAGCCTTATCGAGTC 60.534 57.143 0.00 0.00 0.00 3.36
549 550 0.456221 CGGTGACAGCCTTATCGAGT 59.544 55.000 0.00 0.00 0.00 4.18
550 551 0.456221 ACGGTGACAGCCTTATCGAG 59.544 55.000 0.00 0.00 0.00 4.04
551 552 0.454600 GACGGTGACAGCCTTATCGA 59.545 55.000 0.00 0.00 0.00 3.59
552 553 0.866061 CGACGGTGACAGCCTTATCG 60.866 60.000 0.00 0.49 0.00 2.92
553 554 0.527817 CCGACGGTGACAGCCTTATC 60.528 60.000 5.48 0.00 0.00 1.75
554 555 1.255667 ACCGACGGTGACAGCCTTAT 61.256 55.000 21.02 0.00 32.98 1.73
555 556 1.904865 ACCGACGGTGACAGCCTTA 60.905 57.895 21.02 0.00 32.98 2.69
556 557 3.231736 ACCGACGGTGACAGCCTT 61.232 61.111 21.02 0.00 32.98 4.35
565 566 0.538057 TAGGTTCTGTCACCGACGGT 60.538 55.000 15.37 15.37 42.33 4.83
566 567 0.599558 TTAGGTTCTGTCACCGACGG 59.400 55.000 13.61 13.61 42.33 4.79
567 568 2.427232 TTTAGGTTCTGTCACCGACG 57.573 50.000 0.00 0.00 42.33 5.12
568 569 2.804527 GGTTTTAGGTTCTGTCACCGAC 59.195 50.000 0.00 0.00 42.33 4.79
569 570 2.546373 CGGTTTTAGGTTCTGTCACCGA 60.546 50.000 1.57 0.00 46.95 4.69
570 571 1.796459 CGGTTTTAGGTTCTGTCACCG 59.204 52.381 0.00 0.00 42.33 4.94
571 572 3.064931 CTCGGTTTTAGGTTCTGTCACC 58.935 50.000 0.00 0.00 37.04 4.02
572 573 3.064931 CCTCGGTTTTAGGTTCTGTCAC 58.935 50.000 0.00 0.00 0.00 3.67
573 574 2.701951 ACCTCGGTTTTAGGTTCTGTCA 59.298 45.455 0.00 0.00 45.26 3.58
574 575 3.397849 ACCTCGGTTTTAGGTTCTGTC 57.602 47.619 0.00 0.00 45.26 3.51
596 597 5.816955 CCCCCTTGGTTTTATCTCAAAAA 57.183 39.130 0.00 0.00 0.00 1.94
610 611 3.021263 CACCCCCTACCCCCTTGG 61.021 72.222 0.00 0.00 41.37 3.61
611 612 3.021263 CCACCCCCTACCCCCTTG 61.021 72.222 0.00 0.00 0.00 3.61
612 613 4.381121 CCCACCCCCTACCCCCTT 62.381 72.222 0.00 0.00 0.00 3.95
614 615 4.837421 CTCCCACCCCCTACCCCC 62.837 77.778 0.00 0.00 0.00 5.40
615 616 3.702623 TCTCCCACCCCCTACCCC 61.703 72.222 0.00 0.00 0.00 4.95
616 617 2.040779 CTCTCCCACCCCCTACCC 60.041 72.222 0.00 0.00 0.00 3.69
617 618 1.082392 AACTCTCCCACCCCCTACC 59.918 63.158 0.00 0.00 0.00 3.18
618 619 0.252558 TCAACTCTCCCACCCCCTAC 60.253 60.000 0.00 0.00 0.00 3.18
619 620 0.042731 CTCAACTCTCCCACCCCCTA 59.957 60.000 0.00 0.00 0.00 3.53
620 621 1.229658 CTCAACTCTCCCACCCCCT 60.230 63.158 0.00 0.00 0.00 4.79
621 622 2.301738 CCTCAACTCTCCCACCCCC 61.302 68.421 0.00 0.00 0.00 5.40
622 623 2.301738 CCCTCAACTCTCCCACCCC 61.302 68.421 0.00 0.00 0.00 4.95
623 624 2.301738 CCCCTCAACTCTCCCACCC 61.302 68.421 0.00 0.00 0.00 4.61
624 625 2.301738 CCCCCTCAACTCTCCCACC 61.302 68.421 0.00 0.00 0.00 4.61
625 626 0.252558 TACCCCCTCAACTCTCCCAC 60.253 60.000 0.00 0.00 0.00 4.61
626 627 0.042731 CTACCCCCTCAACTCTCCCA 59.957 60.000 0.00 0.00 0.00 4.37
627 628 0.338814 TCTACCCCCTCAACTCTCCC 59.661 60.000 0.00 0.00 0.00 4.30
628 629 2.112190 CTTCTACCCCCTCAACTCTCC 58.888 57.143 0.00 0.00 0.00 3.71
629 630 2.112190 CCTTCTACCCCCTCAACTCTC 58.888 57.143 0.00 0.00 0.00 3.20
630 631 1.902141 GCCTTCTACCCCCTCAACTCT 60.902 57.143 0.00 0.00 0.00 3.24
631 632 0.542333 GCCTTCTACCCCCTCAACTC 59.458 60.000 0.00 0.00 0.00 3.01
632 633 0.178873 TGCCTTCTACCCCCTCAACT 60.179 55.000 0.00 0.00 0.00 3.16
633 634 0.696501 TTGCCTTCTACCCCCTCAAC 59.303 55.000 0.00 0.00 0.00 3.18
634 635 0.991920 CTTGCCTTCTACCCCCTCAA 59.008 55.000 0.00 0.00 0.00 3.02
635 636 0.118346 TCTTGCCTTCTACCCCCTCA 59.882 55.000 0.00 0.00 0.00 3.86
636 637 0.833949 CTCTTGCCTTCTACCCCCTC 59.166 60.000 0.00 0.00 0.00 4.30
637 638 1.275421 GCTCTTGCCTTCTACCCCCT 61.275 60.000 0.00 0.00 0.00 4.79
638 639 1.224870 GCTCTTGCCTTCTACCCCC 59.775 63.158 0.00 0.00 0.00 5.40
639 640 1.153349 CGCTCTTGCCTTCTACCCC 60.153 63.158 0.00 0.00 35.36 4.95
640 641 0.460459 GTCGCTCTTGCCTTCTACCC 60.460 60.000 0.00 0.00 35.36 3.69
641 642 0.533032 AGTCGCTCTTGCCTTCTACC 59.467 55.000 0.00 0.00 35.36 3.18
642 643 1.474879 AGAGTCGCTCTTGCCTTCTAC 59.525 52.381 3.88 0.00 37.60 2.59
643 644 1.840737 AGAGTCGCTCTTGCCTTCTA 58.159 50.000 3.88 0.00 37.60 2.10
644 645 1.748493 CTAGAGTCGCTCTTGCCTTCT 59.252 52.381 13.34 0.00 41.50 2.85
645 646 2.202295 CTAGAGTCGCTCTTGCCTTC 57.798 55.000 13.34 0.00 41.50 3.46
650 651 0.455410 AGCTGCTAGAGTCGCTCTTG 59.545 55.000 13.34 12.43 41.50 3.02
651 652 0.738389 GAGCTGCTAGAGTCGCTCTT 59.262 55.000 13.34 0.00 44.04 2.85
652 653 0.393673 TGAGCTGCTAGAGTCGCTCT 60.394 55.000 15.22 12.81 46.70 4.09
653 654 0.248458 GTGAGCTGCTAGAGTCGCTC 60.248 60.000 0.15 9.32 46.74 5.03
654 655 0.962855 TGTGAGCTGCTAGAGTCGCT 60.963 55.000 0.15 0.00 35.03 4.93
655 656 0.102120 ATGTGAGCTGCTAGAGTCGC 59.898 55.000 0.15 0.00 0.00 5.19
656 657 1.535649 CCATGTGAGCTGCTAGAGTCG 60.536 57.143 0.15 0.00 0.00 4.18
657 658 1.805871 GCCATGTGAGCTGCTAGAGTC 60.806 57.143 0.15 0.00 0.00 3.36
658 659 0.177604 GCCATGTGAGCTGCTAGAGT 59.822 55.000 0.15 0.00 0.00 3.24
659 660 0.532417 GGCCATGTGAGCTGCTAGAG 60.532 60.000 0.15 0.00 0.00 2.43
660 661 1.266867 TGGCCATGTGAGCTGCTAGA 61.267 55.000 0.00 0.00 0.00 2.43
661 662 1.094073 GTGGCCATGTGAGCTGCTAG 61.094 60.000 9.72 0.00 0.00 3.42
662 663 1.078214 GTGGCCATGTGAGCTGCTA 60.078 57.895 9.72 0.00 0.00 3.49
663 664 2.360852 GTGGCCATGTGAGCTGCT 60.361 61.111 9.72 0.00 0.00 4.24
664 665 2.360852 AGTGGCCATGTGAGCTGC 60.361 61.111 9.72 0.00 0.00 5.25
665 666 0.743701 GAGAGTGGCCATGTGAGCTG 60.744 60.000 9.72 0.00 0.00 4.24
666 667 0.908656 AGAGAGTGGCCATGTGAGCT 60.909 55.000 9.72 0.00 0.00 4.09
667 668 0.035630 AAGAGAGTGGCCATGTGAGC 60.036 55.000 9.72 0.00 0.00 4.26
668 669 2.486472 AAAGAGAGTGGCCATGTGAG 57.514 50.000 9.72 0.00 0.00 3.51
669 670 2.373169 AGAAAAGAGAGTGGCCATGTGA 59.627 45.455 9.72 0.00 0.00 3.58
670 671 2.486982 CAGAAAAGAGAGTGGCCATGTG 59.513 50.000 9.72 0.00 0.00 3.21
671 672 2.787994 CAGAAAAGAGAGTGGCCATGT 58.212 47.619 9.72 0.00 0.00 3.21
672 673 1.471684 GCAGAAAAGAGAGTGGCCATG 59.528 52.381 9.72 0.00 0.00 3.66
673 674 1.615384 GGCAGAAAAGAGAGTGGCCAT 60.615 52.381 9.72 0.00 39.66 4.40
674 675 0.250901 GGCAGAAAAGAGAGTGGCCA 60.251 55.000 0.00 0.00 39.66 5.36
675 676 0.962855 GGGCAGAAAAGAGAGTGGCC 60.963 60.000 0.00 0.00 46.98 5.36
676 677 0.250901 TGGGCAGAAAAGAGAGTGGC 60.251 55.000 0.00 0.00 34.84 5.01
677 678 1.528129 GTGGGCAGAAAAGAGAGTGG 58.472 55.000 0.00 0.00 0.00 4.00
678 679 1.151668 CGTGGGCAGAAAAGAGAGTG 58.848 55.000 0.00 0.00 0.00 3.51
679 680 1.001406 CTCGTGGGCAGAAAAGAGAGT 59.999 52.381 0.00 0.00 0.00 3.24
680 681 1.719600 CTCGTGGGCAGAAAAGAGAG 58.280 55.000 0.00 0.00 0.00 3.20
681 682 0.320771 GCTCGTGGGCAGAAAAGAGA 60.321 55.000 0.00 0.00 0.00 3.10
682 683 0.321122 AGCTCGTGGGCAGAAAAGAG 60.321 55.000 0.00 0.00 34.17 2.85
714 715 0.533308 GTGCTTGTGGGTACGGTCAA 60.533 55.000 0.00 0.00 0.00 3.18
729 730 1.741770 GGAGCCGTTTGATCGTGCT 60.742 57.895 0.00 0.00 38.94 4.40
792 793 2.515996 TTTTCTCGGGGGCGCTACTG 62.516 60.000 7.64 5.80 0.00 2.74
886 888 2.280186 GCGAAGGCTACGGGGATG 60.280 66.667 0.00 0.00 35.83 3.51
912 914 2.124320 CAGTAATGGCGGGGTGGG 60.124 66.667 0.00 0.00 0.00 4.61
1168 1170 1.115930 GGAGCGAGCTAGGATTGGGA 61.116 60.000 0.00 0.00 0.00 4.37
1171 1173 1.686052 AGAAGGAGCGAGCTAGGATTG 59.314 52.381 0.00 0.00 0.00 2.67
1475 1479 0.621571 TGGGAATCTGTGAGGAGGGG 60.622 60.000 0.00 0.00 0.00 4.79
1476 1480 1.211457 CTTGGGAATCTGTGAGGAGGG 59.789 57.143 0.00 0.00 0.00 4.30
1606 1615 5.496556 TGTATCACATTTGGGATCGAAAGT 58.503 37.500 0.00 0.00 39.29 2.66
1638 1647 1.522668 TTGCTCCAATGTGAGGAACG 58.477 50.000 2.65 0.00 37.72 3.95
1658 1688 2.231964 CCTAATGCAAGCTGGAAAGCAA 59.768 45.455 0.00 0.00 40.76 3.91
1700 1730 4.042187 AGAGCAACCTGGTTTCAGATAAGT 59.958 41.667 9.90 0.00 43.49 2.24
1797 1827 3.813724 TGATGACTAGAATAGGACCGACG 59.186 47.826 0.00 0.00 44.97 5.12
1882 4368 0.687354 AGACACTGGGGTAAGCACAG 59.313 55.000 0.00 0.00 38.19 3.66
2161 4689 4.518211 GCATGAGGGAAAACTATCCTGATG 59.482 45.833 0.00 0.00 42.52 3.07
2222 4750 9.528489 AAAGAAAGGTACATACATAATTGTGGT 57.472 29.630 7.15 0.00 36.53 4.16
2267 5152 1.896220 AAGACATGACCAATGCACGT 58.104 45.000 0.00 0.00 40.22 4.49
2550 5460 6.476378 TCTGAAGAAGAAAATTGGGGTAGAG 58.524 40.000 0.00 0.00 29.54 2.43
2633 5589 7.262772 ACTTCACATGCTTTTCATATCAATGG 58.737 34.615 0.00 0.00 33.19 3.16
2814 5828 4.593206 ACATGTACTGGGAGACAAGAAAGA 59.407 41.667 0.00 0.00 0.00 2.52
2900 6047 8.951787 AACTACAAGTTGTGTATGACTTAACA 57.048 30.769 18.90 0.00 41.93 2.41
3194 6346 4.770531 GCCCCTAGACACCATTAAAACTTT 59.229 41.667 0.00 0.00 0.00 2.66
3323 9758 3.287867 TTTCCTCCTTGATCATGGAGC 57.712 47.619 36.00 0.00 46.01 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.