Multiple sequence alignment - TraesCS5A01G049600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G049600 chr5A 100.000 3292 0 0 1 3292 45372518 45369227 0.000000e+00 6080.0
1 TraesCS5A01G049600 chr5D 90.839 1288 77 15 765 2017 56952842 56951561 0.000000e+00 1687.0
2 TraesCS5A01G049600 chr5D 83.658 771 59 27 1 725 56953597 56952848 0.000000e+00 664.0
3 TraesCS5A01G049600 chr5D 88.462 416 16 16 2020 2405 56951529 56951116 1.070000e-129 473.0
4 TraesCS5A01G049600 chr5D 84.956 226 20 7 2485 2705 56951111 56950895 1.990000e-52 217.0
5 TraesCS5A01G049600 chr5B 92.664 1145 64 5 883 2017 59927857 59926723 0.000000e+00 1631.0
6 TraesCS5A01G049600 chr5B 88.483 712 41 21 2024 2700 59926682 59925977 0.000000e+00 822.0
7 TraesCS5A01G049600 chr5B 90.237 338 23 6 1 334 59928796 59928465 1.810000e-117 433.0
8 TraesCS5A01G049600 chr5B 88.162 321 19 5 405 725 59928314 59928013 6.710000e-97 364.0
9 TraesCS5A01G049600 chr5B 87.943 141 7 5 765 900 59928007 59927872 1.220000e-34 158.0
10 TraesCS5A01G049600 chr5B 94.737 38 2 0 336 373 59928442 59928405 3.550000e-05 60.2
11 TraesCS5A01G049600 chr6A 96.593 499 17 0 2792 3290 499770959 499770461 0.000000e+00 828.0
12 TraesCS5A01G049600 chr6A 96.208 501 19 0 2790 3290 448763677 448764177 0.000000e+00 821.0
13 TraesCS5A01G049600 chr6A 95.992 499 20 0 2792 3290 494710133 494710631 0.000000e+00 811.0
14 TraesCS5A01G049600 chr4A 96.407 501 18 0 2790 3290 521374430 521374930 0.000000e+00 826.0
15 TraesCS5A01G049600 chr4A 96.393 499 16 2 2792 3290 488210082 488209586 0.000000e+00 821.0
16 TraesCS5A01G049600 chr4A 95.464 507 21 2 2785 3290 468448434 468447929 0.000000e+00 808.0
17 TraesCS5A01G049600 chr3A 96.192 499 19 0 2792 3290 611055222 611054724 0.000000e+00 817.0
18 TraesCS5A01G049600 chr3A 96.192 499 18 1 2792 3290 456872104 456872601 0.000000e+00 815.0
19 TraesCS5A01G049600 chr2A 96.000 500 20 0 2793 3292 557103949 557104448 0.000000e+00 813.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G049600 chr5A 45369227 45372518 3291 True 6080.000000 6080 100.00000 1 3292 1 chr5A.!!$R1 3291
1 TraesCS5A01G049600 chr5D 56950895 56953597 2702 True 760.250000 1687 86.97875 1 2705 4 chr5D.!!$R1 2704
2 TraesCS5A01G049600 chr5B 59925977 59928796 2819 True 578.033333 1631 90.37100 1 2700 6 chr5B.!!$R1 2699
3 TraesCS5A01G049600 chr6A 448763677 448764177 500 False 821.000000 821 96.20800 2790 3290 1 chr6A.!!$F1 500
4 TraesCS5A01G049600 chr4A 521374430 521374930 500 False 826.000000 826 96.40700 2790 3290 1 chr4A.!!$F1 500
5 TraesCS5A01G049600 chr4A 468447929 468448434 505 True 808.000000 808 95.46400 2785 3290 1 chr4A.!!$R1 505

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
725 832 0.179078 CAGATCAGGTCAGCTGGAGC 60.179 60.0 15.13 10.33 44.43 4.70 F
1118 1265 0.394216 CTTGGATCGGCAACATGGGA 60.394 55.0 0.00 0.00 0.00 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1749 1910 0.248661 CGACTCCACGTCCTGCATAG 60.249 60.0 0.0 0.0 39.56 2.23 R
2737 3007 0.037975 CAAGTGTTGCCCTCCATTGC 60.038 55.0 0.0 0.0 0.00 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.179240 CACGCACGTCTTTCTCATGC 60.179 55.000 0.00 0.00 0.00 4.06
55 56 1.133025 CTCCAAACATAGCCGCCAAAG 59.867 52.381 0.00 0.00 0.00 2.77
71 72 3.737663 GCCAAAGCTGAACATGTCAAACA 60.738 43.478 0.00 0.00 35.22 2.83
187 199 4.813697 CCCAAGATCTCGAAAATCTTCTCC 59.186 45.833 16.08 0.00 40.61 3.71
230 242 1.557651 GGGTCGTATCGTTTCAGCTC 58.442 55.000 0.00 0.00 0.00 4.09
246 258 3.376914 CTCACACGCCGACGATCGA 62.377 63.158 24.34 0.00 43.74 3.59
259 271 5.479654 CCGACGATCGATCATGATCATGAC 61.480 50.000 34.83 26.19 43.74 3.06
265 277 1.451504 TCATGATCATGACCCGCCC 59.548 57.895 30.27 0.00 42.42 6.13
270 282 3.411114 ATCATGACCCGCCCTGCTG 62.411 63.158 0.00 0.00 0.00 4.41
293 305 2.884639 GCTAAGTGAACCTTGCTTTGGA 59.115 45.455 0.00 0.00 34.46 3.53
296 308 0.310854 GTGAACCTTGCTTTGGACCG 59.689 55.000 0.00 0.00 0.00 4.79
298 310 2.142357 GAACCTTGCTTTGGACCGCC 62.142 60.000 0.00 0.00 0.00 6.13
315 330 1.915093 CCGAGTACGCGCATACAAC 59.085 57.895 16.76 8.42 38.29 3.32
334 349 5.118990 ACAACGAATAATGATCTCTGGGTG 58.881 41.667 0.00 0.00 0.00 4.61
536 638 1.580845 GCCAGGCTGCTACAACTGTG 61.581 60.000 9.56 0.00 0.00 3.66
560 662 5.511545 GGTGGTGTACTTCTGAAGTTCTGAT 60.512 44.000 26.33 4.90 42.81 2.90
561 663 5.992217 GTGGTGTACTTCTGAAGTTCTGATT 59.008 40.000 26.33 4.20 42.81 2.57
562 664 6.146347 GTGGTGTACTTCTGAAGTTCTGATTC 59.854 42.308 26.33 11.50 42.81 2.52
563 665 6.042093 TGGTGTACTTCTGAAGTTCTGATTCT 59.958 38.462 26.33 2.79 42.81 2.40
564 666 6.367422 GGTGTACTTCTGAAGTTCTGATTCTG 59.633 42.308 26.33 7.02 42.81 3.02
565 667 7.148641 GTGTACTTCTGAAGTTCTGATTCTGA 58.851 38.462 26.33 3.50 42.81 3.27
575 677 1.630369 TCTGATTCTGAACCCACCCAG 59.370 52.381 0.00 0.00 0.00 4.45
588 690 1.410648 CCACCCAGCTTGGCTTGATAT 60.411 52.381 3.14 0.00 36.40 1.63
589 691 2.158623 CCACCCAGCTTGGCTTGATATA 60.159 50.000 3.14 0.00 36.40 0.86
647 754 1.028330 CATCCATCCTGCTGCACGTT 61.028 55.000 0.00 0.00 0.00 3.99
648 755 0.541392 ATCCATCCTGCTGCACGTTA 59.459 50.000 0.00 0.00 0.00 3.18
656 763 2.769617 CTGCACGTTAACCGCTCG 59.230 61.111 13.94 0.00 41.42 5.03
670 777 1.160329 CGCTCGGCTTAATTGGAGGG 61.160 60.000 0.00 0.00 33.97 4.30
676 783 1.143889 GGCTTAATTGGAGGGGGAGAG 59.856 57.143 0.00 0.00 0.00 3.20
678 785 2.158740 GCTTAATTGGAGGGGGAGAGAC 60.159 54.545 0.00 0.00 0.00 3.36
720 827 2.533916 TCAGAACAGATCAGGTCAGCT 58.466 47.619 5.90 0.00 0.00 4.24
725 832 0.179078 CAGATCAGGTCAGCTGGAGC 60.179 60.000 15.13 10.33 44.43 4.70
735 842 3.072476 GCTGGAGCTGGAGGTTGA 58.928 61.111 0.00 0.00 38.21 3.18
736 843 1.606531 GCTGGAGCTGGAGGTTGAT 59.393 57.895 0.00 0.00 38.21 2.57
737 844 0.463474 GCTGGAGCTGGAGGTTGATC 60.463 60.000 0.00 0.00 38.21 2.92
738 845 1.202330 CTGGAGCTGGAGGTTGATCT 58.798 55.000 0.00 0.00 0.00 2.75
739 846 0.907486 TGGAGCTGGAGGTTGATCTG 59.093 55.000 0.00 0.00 0.00 2.90
740 847 1.198713 GGAGCTGGAGGTTGATCTGA 58.801 55.000 0.00 0.00 0.00 3.27
741 848 1.556911 GGAGCTGGAGGTTGATCTGAA 59.443 52.381 0.00 0.00 0.00 3.02
742 849 2.419851 GGAGCTGGAGGTTGATCTGAAG 60.420 54.545 0.00 0.00 0.00 3.02
743 850 1.558756 AGCTGGAGGTTGATCTGAAGG 59.441 52.381 0.00 0.00 0.00 3.46
744 851 2.016096 GCTGGAGGTTGATCTGAAGGC 61.016 57.143 0.00 0.00 0.00 4.35
745 852 1.558756 CTGGAGGTTGATCTGAAGGCT 59.441 52.381 0.00 0.00 0.00 4.58
746 853 1.556911 TGGAGGTTGATCTGAAGGCTC 59.443 52.381 0.00 0.00 0.00 4.70
747 854 1.836802 GGAGGTTGATCTGAAGGCTCT 59.163 52.381 0.00 0.00 0.00 4.09
748 855 2.419851 GGAGGTTGATCTGAAGGCTCTG 60.420 54.545 0.00 0.00 0.00 3.35
749 856 1.065564 AGGTTGATCTGAAGGCTCTGC 60.066 52.381 0.00 0.00 0.00 4.26
750 857 1.339438 GGTTGATCTGAAGGCTCTGCA 60.339 52.381 0.00 0.00 0.00 4.41
751 858 1.736681 GTTGATCTGAAGGCTCTGCAC 59.263 52.381 0.00 0.00 0.00 4.57
752 859 1.273759 TGATCTGAAGGCTCTGCACT 58.726 50.000 0.00 0.00 0.00 4.40
753 860 2.460669 TGATCTGAAGGCTCTGCACTA 58.539 47.619 0.00 0.00 0.00 2.74
754 861 2.833943 TGATCTGAAGGCTCTGCACTAA 59.166 45.455 0.00 0.00 0.00 2.24
755 862 3.453717 TGATCTGAAGGCTCTGCACTAAT 59.546 43.478 0.00 0.00 0.00 1.73
756 863 4.651045 TGATCTGAAGGCTCTGCACTAATA 59.349 41.667 0.00 0.00 0.00 0.98
757 864 4.662468 TCTGAAGGCTCTGCACTAATAG 57.338 45.455 0.00 0.00 0.00 1.73
758 865 4.026744 TCTGAAGGCTCTGCACTAATAGT 58.973 43.478 0.00 0.00 0.00 2.12
759 866 5.201243 TCTGAAGGCTCTGCACTAATAGTA 58.799 41.667 0.00 0.00 0.00 1.82
760 867 5.300539 TCTGAAGGCTCTGCACTAATAGTAG 59.699 44.000 0.00 0.00 0.00 2.57
761 868 5.201243 TGAAGGCTCTGCACTAATAGTAGA 58.799 41.667 3.83 0.00 0.00 2.59
762 869 5.656859 TGAAGGCTCTGCACTAATAGTAGAA 59.343 40.000 3.83 0.00 0.00 2.10
763 870 5.782893 AGGCTCTGCACTAATAGTAGAAG 57.217 43.478 3.83 0.00 0.00 2.85
814 921 2.687700 AGCAGCTAGTTCATCAGGTG 57.312 50.000 0.00 0.00 41.96 4.00
845 952 4.317530 TCTGTGTCCTACCAGAGTGTAT 57.682 45.455 0.00 0.00 0.00 2.29
846 953 5.446260 TCTGTGTCCTACCAGAGTGTATA 57.554 43.478 0.00 0.00 0.00 1.47
847 954 6.014771 TCTGTGTCCTACCAGAGTGTATAT 57.985 41.667 0.00 0.00 0.00 0.86
848 955 6.432581 TCTGTGTCCTACCAGAGTGTATATT 58.567 40.000 0.00 0.00 0.00 1.28
849 956 7.580007 TCTGTGTCCTACCAGAGTGTATATTA 58.420 38.462 0.00 0.00 0.00 0.98
852 959 6.776603 GTGTCCTACCAGAGTGTATATTACCT 59.223 42.308 0.00 0.00 0.00 3.08
874 981 8.599624 ACCTAACTATACCTGTTTAGCTACAA 57.400 34.615 0.00 0.00 0.00 2.41
875 982 8.473219 ACCTAACTATACCTGTTTAGCTACAAC 58.527 37.037 0.00 2.54 0.00 3.32
880 987 9.643735 ACTATACCTGTTTAGCTACAACTATCT 57.356 33.333 15.26 4.79 0.00 1.98
881 988 9.900710 CTATACCTGTTTAGCTACAACTATCTG 57.099 37.037 15.26 6.37 0.00 2.90
912 1056 4.335416 TCTGGCCTTTCTAATTCTTGGTG 58.665 43.478 3.32 0.00 0.00 4.17
999 1144 3.191581 AGTGTGTCTCATACTGAGGAACG 59.808 47.826 4.43 0.00 44.39 3.95
1080 1225 2.362503 TCCGTCCTCATCACCGCT 60.363 61.111 0.00 0.00 0.00 5.52
1118 1265 0.394216 CTTGGATCGGCAACATGGGA 60.394 55.000 0.00 0.00 0.00 4.37
1346 1501 2.123988 CTCGGAGATCTTCGGCGGAG 62.124 65.000 23.08 9.46 33.89 4.63
1391 1546 2.555199 CGTGCAAAGAGGAGGATAAGG 58.445 52.381 0.00 0.00 0.00 2.69
1868 2029 3.091318 TCGGAGAGGGTACGTGATC 57.909 57.895 0.00 0.00 0.00 2.92
1879 2040 3.067180 GGGTACGTGATCAATACCTTCGA 59.933 47.826 25.79 3.69 38.75 3.71
1933 2108 0.319040 TGCTGACTCTGTTCTGCGTC 60.319 55.000 0.00 0.00 41.92 5.19
2017 2192 3.190535 CCCCACTGCAACAAAGTATGTAC 59.809 47.826 0.00 0.00 42.99 2.90
2018 2193 3.818210 CCCACTGCAACAAAGTATGTACA 59.182 43.478 0.00 0.00 42.99 2.90
2022 2231 4.821805 ACTGCAACAAAGTATGTACAGCTT 59.178 37.500 0.33 5.70 44.39 3.74
2121 2338 2.126071 CGGACAAGGCGTCGATGT 60.126 61.111 6.48 1.01 46.42 3.06
2299 2556 6.370442 CGTATACAGTTCAAATGACCCAGAAA 59.630 38.462 3.32 0.00 0.00 2.52
2303 2560 5.010012 ACAGTTCAAATGACCCAGAAATGAC 59.990 40.000 8.21 0.00 38.05 3.06
2305 2562 3.430453 TCAAATGACCCAGAAATGACCC 58.570 45.455 0.00 0.00 0.00 4.46
2306 2563 3.164268 CAAATGACCCAGAAATGACCCA 58.836 45.455 0.00 0.00 0.00 4.51
2307 2564 2.814805 ATGACCCAGAAATGACCCAG 57.185 50.000 0.00 0.00 0.00 4.45
2308 2565 1.741028 TGACCCAGAAATGACCCAGA 58.259 50.000 0.00 0.00 0.00 3.86
2309 2566 1.351017 TGACCCAGAAATGACCCAGAC 59.649 52.381 0.00 0.00 0.00 3.51
2348 2606 6.018994 TCGCTTTACTTTGTTCAGAGAAGTTC 60.019 38.462 0.00 0.00 35.43 3.01
2366 2624 9.793252 GAGAAGTTCGGTGTACTGTATTTTATA 57.207 33.333 0.00 0.00 0.00 0.98
2433 2694 7.383843 CCTTTTATTTTGAAATGTAAGGCGTGT 59.616 33.333 13.60 0.00 35.47 4.49
2534 2800 6.422701 TGAAAGTAGTTCTTGTGGTTATCACG 59.577 38.462 0.00 0.00 41.87 4.35
2548 2814 8.068893 GTGGTTATCACGGTGTAACTATAATG 57.931 38.462 21.57 0.00 36.56 1.90
2583 2849 6.255020 GCATGAAATTTATGCTCAAAGTCCAG 59.745 38.462 14.39 0.00 45.64 3.86
2584 2850 6.899393 TGAAATTTATGCTCAAAGTCCAGT 57.101 33.333 0.00 0.00 0.00 4.00
2589 2855 0.843309 TGCTCAAAGTCCAGTTGGGA 59.157 50.000 0.00 0.00 45.89 4.37
2621 2890 2.302445 TGCCTTGTTCCAAATTGATGGG 59.698 45.455 0.00 0.00 41.05 4.00
2623 2892 3.368739 GCCTTGTTCCAAATTGATGGGAG 60.369 47.826 0.00 0.00 41.05 4.30
2624 2893 3.834231 CCTTGTTCCAAATTGATGGGAGT 59.166 43.478 0.00 0.00 41.05 3.85
2625 2894 5.016173 CCTTGTTCCAAATTGATGGGAGTA 58.984 41.667 0.00 0.00 41.05 2.59
2626 2895 5.105756 CCTTGTTCCAAATTGATGGGAGTAC 60.106 44.000 0.00 0.00 41.05 2.73
2643 2912 7.277396 TGGGAGTACTATTTTCCTTTTATCGG 58.723 38.462 0.00 0.00 0.00 4.18
2646 2915 5.756833 AGTACTATTTTCCTTTTATCGGCGG 59.243 40.000 7.21 0.00 0.00 6.13
2705 2975 6.935208 GGTCTGTTTAAAACTCACCTAGATGT 59.065 38.462 0.00 0.00 33.52 3.06
2706 2976 7.444487 GGTCTGTTTAAAACTCACCTAGATGTT 59.556 37.037 0.00 0.00 33.52 2.71
2707 2977 8.837389 GTCTGTTTAAAACTCACCTAGATGTTT 58.163 33.333 0.00 0.00 32.60 2.83
2708 2978 9.403583 TCTGTTTAAAACTCACCTAGATGTTTT 57.596 29.630 14.48 14.48 39.11 2.43
2709 2979 9.450807 CTGTTTAAAACTCACCTAGATGTTTTG 57.549 33.333 17.17 5.04 37.73 2.44
2710 2980 8.962679 TGTTTAAAACTCACCTAGATGTTTTGT 58.037 29.630 17.17 0.00 37.73 2.83
2711 2981 9.797556 GTTTAAAACTCACCTAGATGTTTTGTT 57.202 29.630 17.17 4.55 37.73 2.83
2712 2982 9.796120 TTTAAAACTCACCTAGATGTTTTGTTG 57.204 29.630 17.17 0.00 37.73 3.33
2713 2983 7.404671 AAAACTCACCTAGATGTTTTGTTGT 57.595 32.000 11.40 0.00 36.80 3.32
2714 2984 6.619801 AACTCACCTAGATGTTTTGTTGTC 57.380 37.500 0.00 0.00 0.00 3.18
2715 2985 5.930135 ACTCACCTAGATGTTTTGTTGTCT 58.070 37.500 0.00 0.00 0.00 3.41
2716 2986 5.992217 ACTCACCTAGATGTTTTGTTGTCTC 59.008 40.000 0.00 0.00 0.00 3.36
2717 2987 5.924356 TCACCTAGATGTTTTGTTGTCTCA 58.076 37.500 0.00 0.00 0.00 3.27
2718 2988 5.758296 TCACCTAGATGTTTTGTTGTCTCAC 59.242 40.000 0.00 0.00 0.00 3.51
2719 2989 4.750098 ACCTAGATGTTTTGTTGTCTCACG 59.250 41.667 0.00 0.00 0.00 4.35
2720 2990 4.750098 CCTAGATGTTTTGTTGTCTCACGT 59.250 41.667 0.00 0.00 0.00 4.49
2721 2991 5.236478 CCTAGATGTTTTGTTGTCTCACGTT 59.764 40.000 0.00 0.00 0.00 3.99
2722 2992 4.908736 AGATGTTTTGTTGTCTCACGTTG 58.091 39.130 0.00 0.00 0.00 4.10
2723 2993 4.634004 AGATGTTTTGTTGTCTCACGTTGA 59.366 37.500 0.00 0.00 0.00 3.18
2724 2994 4.955925 TGTTTTGTTGTCTCACGTTGAT 57.044 36.364 0.00 0.00 0.00 2.57
2725 2995 4.657055 TGTTTTGTTGTCTCACGTTGATG 58.343 39.130 0.00 0.00 0.00 3.07
2726 2996 3.961477 TTTGTTGTCTCACGTTGATGG 57.039 42.857 0.00 0.00 0.00 3.51
2727 2997 2.613026 TGTTGTCTCACGTTGATGGT 57.387 45.000 0.00 0.00 0.00 3.55
2728 2998 2.209273 TGTTGTCTCACGTTGATGGTG 58.791 47.619 0.00 0.00 36.74 4.17
2729 2999 1.069906 GTTGTCTCACGTTGATGGTGC 60.070 52.381 0.00 0.00 35.39 5.01
2730 3000 0.943835 TGTCTCACGTTGATGGTGCG 60.944 55.000 0.00 0.00 35.39 5.34
2731 3001 2.027073 TCTCACGTTGATGGTGCGC 61.027 57.895 0.00 0.00 35.39 6.09
2732 3002 2.280457 TCACGTTGATGGTGCGCA 60.280 55.556 5.66 5.66 35.39 6.09
2733 3003 1.840630 CTCACGTTGATGGTGCGCAA 61.841 55.000 14.00 0.00 35.39 4.85
2734 3004 1.440850 CACGTTGATGGTGCGCAAG 60.441 57.895 14.00 0.00 43.44 4.01
2735 3005 1.891919 ACGTTGATGGTGCGCAAGT 60.892 52.632 14.00 0.00 41.68 3.16
2736 3006 1.282570 CGTTGATGGTGCGCAAGTT 59.717 52.632 14.00 0.00 41.68 2.66
2737 3007 0.998226 CGTTGATGGTGCGCAAGTTG 60.998 55.000 14.00 0.00 41.68 3.16
2738 3008 1.007502 TTGATGGTGCGCAAGTTGC 60.008 52.632 14.00 18.18 40.69 4.17
2739 3009 1.732417 TTGATGGTGCGCAAGTTGCA 61.732 50.000 26.56 7.96 45.36 4.08
2740 3010 1.007502 GATGGTGCGCAAGTTGCAA 60.008 52.632 26.56 12.09 45.36 4.08
2741 3011 0.388907 GATGGTGCGCAAGTTGCAAT 60.389 50.000 26.56 11.74 45.36 3.56
2742 3012 0.668096 ATGGTGCGCAAGTTGCAATG 60.668 50.000 26.56 12.26 45.36 2.82
2743 3013 2.023223 GGTGCGCAAGTTGCAATGG 61.023 57.895 26.56 11.90 45.36 3.16
2744 3014 1.007502 GTGCGCAAGTTGCAATGGA 60.008 52.632 26.56 9.82 45.36 3.41
2745 3015 1.005294 GTGCGCAAGTTGCAATGGAG 61.005 55.000 26.56 10.83 45.36 3.86
2746 3016 1.444895 GCGCAAGTTGCAATGGAGG 60.445 57.895 26.56 10.13 45.36 4.30
2747 3017 1.213537 CGCAAGTTGCAATGGAGGG 59.786 57.895 26.56 4.77 45.36 4.30
2748 3018 1.079612 GCAAGTTGCAATGGAGGGC 60.080 57.895 22.90 0.00 44.26 5.19
2749 3019 1.818959 GCAAGTTGCAATGGAGGGCA 61.819 55.000 22.90 0.00 44.26 5.36
2750 3020 0.680618 CAAGTTGCAATGGAGGGCAA 59.319 50.000 0.59 0.00 46.84 4.52
2752 3022 4.615170 TTGCAATGGAGGGCAACA 57.385 50.000 0.00 0.00 44.41 3.33
2753 3023 2.048601 TTGCAATGGAGGGCAACAC 58.951 52.632 0.00 0.00 44.41 3.32
2754 3024 0.469705 TTGCAATGGAGGGCAACACT 60.470 50.000 0.00 0.00 44.41 3.55
2755 3025 0.469705 TGCAATGGAGGGCAACACTT 60.470 50.000 0.00 0.00 37.03 3.16
2756 3026 0.037975 GCAATGGAGGGCAACACTTG 60.038 55.000 0.00 0.00 39.74 3.16
2774 3044 1.717937 GCAGTTGCATGTCTAGCGG 59.282 57.895 0.00 0.00 41.59 5.52
2775 3045 1.717937 CAGTTGCATGTCTAGCGGC 59.282 57.895 0.00 0.00 33.85 6.53
2776 3046 1.811266 AGTTGCATGTCTAGCGGCG 60.811 57.895 0.51 0.51 33.85 6.46
2777 3047 2.511373 TTGCATGTCTAGCGGCGG 60.511 61.111 9.78 0.00 33.85 6.13
2778 3048 3.012859 TTGCATGTCTAGCGGCGGA 62.013 57.895 9.78 0.00 33.85 5.54
2779 3049 2.962253 GCATGTCTAGCGGCGGAC 60.962 66.667 9.78 17.59 0.00 4.79
2780 3050 2.494445 CATGTCTAGCGGCGGACA 59.506 61.111 24.99 24.99 44.84 4.02
2781 3051 3.538614 ATGTCTAGCGGCGGACAT 58.461 55.556 26.48 26.48 44.66 3.06
2782 3052 2.494445 TGTCTAGCGGCGGACATG 59.506 61.111 21.26 0.00 37.52 3.21
2783 3053 2.962253 GTCTAGCGGCGGACATGC 60.962 66.667 9.78 0.00 33.19 4.06
2784 3054 3.457263 TCTAGCGGCGGACATGCA 61.457 61.111 9.78 0.00 36.28 3.96
2785 3055 2.511373 CTAGCGGCGGACATGCAA 60.511 61.111 9.78 0.00 36.28 4.08
2786 3056 2.813179 CTAGCGGCGGACATGCAAC 61.813 63.158 9.78 0.00 36.28 4.17
2787 3057 3.309436 TAGCGGCGGACATGCAACT 62.309 57.895 9.78 0.00 36.28 3.16
2788 3058 1.950973 TAGCGGCGGACATGCAACTA 61.951 55.000 9.78 0.00 36.28 2.24
2801 3071 1.768275 TGCAACTATCCCGGTGATGAT 59.232 47.619 13.77 6.02 34.76 2.45
2803 3073 2.224281 GCAACTATCCCGGTGATGATCA 60.224 50.000 13.77 0.00 34.76 2.92
2847 3117 5.371115 TCACTAAGTGTTAATGCTTTGGC 57.629 39.130 0.00 0.00 34.79 4.52
2851 3121 0.885196 GTGTTAATGCTTTGGCCCGA 59.115 50.000 0.00 0.00 37.74 5.14
2998 3269 7.692460 ATACATGCCTACATTACATTGATGG 57.308 36.000 0.00 0.00 32.87 3.51
3035 3306 6.873997 TCTGTGTCACCCTATGTTATAACTG 58.126 40.000 16.33 5.68 0.00 3.16
3199 3470 6.176183 ACCGTTACCGCTACTATCATACTAT 58.824 40.000 0.00 0.00 0.00 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 1.739466 CAACACGGAGCATGTAAGCAT 59.261 47.619 0.00 0.00 36.85 3.79
153 165 3.466791 ATCTTGGGCGATCGGGCTG 62.467 63.158 18.30 5.41 41.87 4.85
187 199 2.954753 GCTTGCGGGTCACTGTTCG 61.955 63.158 0.00 0.00 0.00 3.95
208 220 0.171903 CTGAAACGATACGACCCGGT 59.828 55.000 0.00 0.00 0.00 5.28
210 222 0.179145 AGCTGAAACGATACGACCCG 60.179 55.000 0.00 0.00 0.00 5.28
211 223 1.135199 TGAGCTGAAACGATACGACCC 60.135 52.381 0.00 0.00 0.00 4.46
213 225 2.341760 GTGTGAGCTGAAACGATACGAC 59.658 50.000 0.00 0.00 0.00 4.34
230 242 2.277949 ATCGATCGTCGGCGTGTG 60.278 61.111 15.94 0.00 40.88 3.82
270 282 0.875059 AAGCAAGGTTCACTTAGCGC 59.125 50.000 0.00 0.00 37.29 5.92
273 285 3.253432 GGTCCAAAGCAAGGTTCACTTAG 59.747 47.826 0.00 0.00 37.29 2.18
296 308 1.874915 TTGTATGCGCGTACTCGGC 60.875 57.895 33.14 13.19 37.56 5.54
298 310 0.858548 TCGTTGTATGCGCGTACTCG 60.859 55.000 33.14 32.11 40.37 4.18
315 330 4.697514 ACACACCCAGAGATCATTATTCG 58.302 43.478 0.00 0.00 0.00 3.34
334 349 2.983592 CCGCCACCTGGGAAACAC 60.984 66.667 0.00 0.00 40.01 3.32
467 569 8.975295 TGACTGAACTGGATGGATATATATCAG 58.025 37.037 21.50 13.74 37.26 2.90
519 621 0.250467 ACCACAGTTGTAGCAGCCTG 60.250 55.000 0.00 0.00 0.00 4.85
536 638 4.058817 CAGAACTTCAGAAGTACACCACC 58.941 47.826 16.46 1.12 41.91 4.61
560 662 0.178992 CAAGCTGGGTGGGTTCAGAA 60.179 55.000 0.00 0.00 33.11 3.02
561 663 1.455849 CAAGCTGGGTGGGTTCAGA 59.544 57.895 0.00 0.00 33.11 3.27
562 664 1.604593 CCAAGCTGGGTGGGTTCAG 60.605 63.158 0.00 0.00 32.67 3.02
563 665 2.520458 CCAAGCTGGGTGGGTTCA 59.480 61.111 0.00 0.00 32.67 3.18
564 666 2.991540 GCCAAGCTGGGTGGGTTC 60.992 66.667 9.48 0.00 38.19 3.62
588 690 1.184970 GCAGCAGGGTGGGCTTTTTA 61.185 55.000 0.24 0.00 40.23 1.52
589 691 2.510551 GCAGCAGGGTGGGCTTTTT 61.511 57.895 0.24 0.00 40.23 1.94
647 754 1.207570 TCCAATTAAGCCGAGCGGTTA 59.792 47.619 10.94 5.50 37.65 2.85
648 755 0.035820 TCCAATTAAGCCGAGCGGTT 60.036 50.000 10.94 0.87 37.65 4.44
656 763 1.143889 CTCTCCCCCTCCAATTAAGCC 59.856 57.143 0.00 0.00 0.00 4.35
670 777 0.248843 CCTGCAACTCTGTCTCTCCC 59.751 60.000 0.00 0.00 0.00 4.30
676 783 0.940126 CACACACCTGCAACTCTGTC 59.060 55.000 0.00 0.00 0.00 3.51
678 785 0.816825 AGCACACACCTGCAACTCTG 60.817 55.000 0.00 0.00 39.86 3.35
720 827 0.907486 CAGATCAACCTCCAGCTCCA 59.093 55.000 0.00 0.00 0.00 3.86
725 832 1.558756 AGCCTTCAGATCAACCTCCAG 59.441 52.381 0.00 0.00 0.00 3.86
726 833 1.556911 GAGCCTTCAGATCAACCTCCA 59.443 52.381 0.00 0.00 0.00 3.86
727 834 1.836802 AGAGCCTTCAGATCAACCTCC 59.163 52.381 0.00 0.00 0.00 4.30
728 835 2.903798 CAGAGCCTTCAGATCAACCTC 58.096 52.381 0.00 0.00 0.00 3.85
730 837 1.339438 TGCAGAGCCTTCAGATCAACC 60.339 52.381 0.00 0.00 0.00 3.77
731 838 1.736681 GTGCAGAGCCTTCAGATCAAC 59.263 52.381 0.00 0.00 0.00 3.18
732 839 1.627329 AGTGCAGAGCCTTCAGATCAA 59.373 47.619 0.00 0.00 0.00 2.57
733 840 1.273759 AGTGCAGAGCCTTCAGATCA 58.726 50.000 0.00 0.00 0.00 2.92
734 841 3.533606 TTAGTGCAGAGCCTTCAGATC 57.466 47.619 0.00 0.00 0.00 2.75
735 842 4.653341 ACTATTAGTGCAGAGCCTTCAGAT 59.347 41.667 0.00 0.00 0.00 2.90
736 843 4.026744 ACTATTAGTGCAGAGCCTTCAGA 58.973 43.478 0.00 0.00 0.00 3.27
737 844 4.399004 ACTATTAGTGCAGAGCCTTCAG 57.601 45.455 0.00 0.00 0.00 3.02
738 845 5.201243 TCTACTATTAGTGCAGAGCCTTCA 58.799 41.667 6.60 0.00 0.00 3.02
739 846 5.776173 TCTACTATTAGTGCAGAGCCTTC 57.224 43.478 6.60 0.00 0.00 3.46
740 847 5.659079 ACTTCTACTATTAGTGCAGAGCCTT 59.341 40.000 6.60 0.00 0.00 4.35
741 848 5.205056 ACTTCTACTATTAGTGCAGAGCCT 58.795 41.667 6.60 0.00 0.00 4.58
742 849 5.523438 ACTTCTACTATTAGTGCAGAGCC 57.477 43.478 6.60 0.00 0.00 4.70
743 850 7.266922 ACTACTTCTACTATTAGTGCAGAGC 57.733 40.000 6.60 0.00 0.00 4.09
753 860 9.924010 AGTTGGTGAGATACTACTTCTACTATT 57.076 33.333 0.00 0.00 0.00 1.73
754 861 9.344772 CAGTTGGTGAGATACTACTTCTACTAT 57.655 37.037 0.00 0.00 0.00 2.12
755 862 7.282675 GCAGTTGGTGAGATACTACTTCTACTA 59.717 40.741 0.00 0.00 0.00 1.82
756 863 6.095720 GCAGTTGGTGAGATACTACTTCTACT 59.904 42.308 0.00 0.00 0.00 2.57
757 864 6.127703 TGCAGTTGGTGAGATACTACTTCTAC 60.128 42.308 0.00 0.00 0.00 2.59
758 865 5.949952 TGCAGTTGGTGAGATACTACTTCTA 59.050 40.000 0.00 0.00 0.00 2.10
759 866 4.772624 TGCAGTTGGTGAGATACTACTTCT 59.227 41.667 0.00 0.00 0.00 2.85
760 867 5.073311 TGCAGTTGGTGAGATACTACTTC 57.927 43.478 0.00 0.00 0.00 3.01
761 868 4.621747 GCTGCAGTTGGTGAGATACTACTT 60.622 45.833 16.64 0.00 0.00 2.24
762 869 3.118956 GCTGCAGTTGGTGAGATACTACT 60.119 47.826 16.64 0.00 0.00 2.57
763 870 3.190874 GCTGCAGTTGGTGAGATACTAC 58.809 50.000 16.64 0.00 0.00 2.73
814 921 3.933332 GGTAGGACACAGAAGTAACATGC 59.067 47.826 0.00 0.00 0.00 4.06
847 954 9.699410 TGTAGCTAAACAGGTATAGTTAGGTAA 57.301 33.333 0.00 0.00 0.00 2.85
848 955 9.699410 TTGTAGCTAAACAGGTATAGTTAGGTA 57.301 33.333 0.00 0.00 0.00 3.08
849 956 8.473219 GTTGTAGCTAAACAGGTATAGTTAGGT 58.527 37.037 0.00 0.00 0.00 3.08
874 981 2.996631 CCAGAAAAGGCAGCAGATAGT 58.003 47.619 0.00 0.00 0.00 2.12
895 1039 4.616835 GCAGCACACCAAGAATTAGAAAGG 60.617 45.833 0.00 0.00 0.00 3.11
967 1112 0.593618 GAGACACACTCGCTCACTCA 59.406 55.000 0.00 0.00 35.84 3.41
1118 1265 2.475155 TCAGTCATGGATTCCAGAGCT 58.525 47.619 11.78 5.80 36.75 4.09
1378 1533 1.203001 CCTCGCTCCTTATCCTCCTCT 60.203 57.143 0.00 0.00 0.00 3.69
1636 1797 2.760385 GACCTAGCGTCCCTGGCT 60.760 66.667 0.00 0.00 44.35 4.75
1712 1873 4.112341 CTGCTTCCGCTTGCTGGC 62.112 66.667 0.00 0.00 36.97 4.85
1749 1910 0.248661 CGACTCCACGTCCTGCATAG 60.249 60.000 0.00 0.00 39.56 2.23
1863 2024 6.196724 CGAAGTAAGTCGAAGGTATTGATCAC 59.803 42.308 0.00 0.00 43.86 3.06
1879 2040 5.302313 AGAGTCAAGGAAACTCGAAGTAAGT 59.698 40.000 0.00 0.00 46.23 2.24
1933 2108 1.202782 CCCTTCTCCTCTGCATCCATG 60.203 57.143 0.00 0.00 0.00 3.66
2049 2266 2.229675 TCAGATCGATCGCAATTGCT 57.770 45.000 26.86 10.47 39.32 3.91
2169 2386 1.893808 CGCCCATAGCCCACATCAC 60.894 63.158 0.00 0.00 38.78 3.06
2271 2528 4.034048 GGGTCATTTGAACTGTATACGCAG 59.966 45.833 0.00 0.00 41.92 5.18
2299 2556 2.368875 ACGAAGAAAGTGTCTGGGTCAT 59.631 45.455 0.00 0.00 36.40 3.06
2303 2560 2.526304 TCACGAAGAAAGTGTCTGGG 57.474 50.000 0.00 0.00 40.28 4.45
2305 2562 2.091277 GCGATCACGAAGAAAGTGTCTG 59.909 50.000 0.00 0.00 42.66 3.51
2306 2563 2.029828 AGCGATCACGAAGAAAGTGTCT 60.030 45.455 0.00 0.00 42.66 3.41
2307 2564 2.329379 AGCGATCACGAAGAAAGTGTC 58.671 47.619 0.00 0.00 42.66 3.67
2308 2565 2.440539 AGCGATCACGAAGAAAGTGT 57.559 45.000 0.00 0.00 42.66 3.55
2309 2566 3.795561 AAAGCGATCACGAAGAAAGTG 57.204 42.857 0.00 0.00 42.66 3.16
2405 2664 8.311109 ACGCCTTACATTTCAAAATAAAAGGAT 58.689 29.630 21.10 11.79 39.48 3.24
2572 2838 2.623416 GGTTTCCCAACTGGACTTTGAG 59.377 50.000 0.00 0.00 45.11 3.02
2589 2855 3.900601 TGGAACAAGGCATATGTTGGTTT 59.099 39.130 4.29 0.00 40.90 3.27
2621 2890 6.073927 CCGCCGATAAAAGGAAAATAGTACTC 60.074 42.308 0.00 0.00 0.00 2.59
2623 2892 5.559608 GCCGCCGATAAAAGGAAAATAGTAC 60.560 44.000 0.00 0.00 0.00 2.73
2624 2893 4.512571 GCCGCCGATAAAAGGAAAATAGTA 59.487 41.667 0.00 0.00 0.00 1.82
2625 2894 3.314357 GCCGCCGATAAAAGGAAAATAGT 59.686 43.478 0.00 0.00 0.00 2.12
2626 2895 3.314080 TGCCGCCGATAAAAGGAAAATAG 59.686 43.478 0.00 0.00 0.00 1.73
2643 2912 4.793071 TGTGTAAATATGCATAATGCCGC 58.207 39.130 11.13 6.91 44.23 6.53
2678 2947 6.756221 TCTAGGTGAGTTTTAAACAGACCTC 58.244 40.000 24.54 9.60 41.60 3.85
2679 2948 6.742559 TCTAGGTGAGTTTTAAACAGACCT 57.257 37.500 24.36 24.36 43.58 3.85
2684 2954 8.962679 ACAAAACATCTAGGTGAGTTTTAAACA 58.037 29.630 10.76 0.00 40.89 2.83
2687 2957 8.962679 ACAACAAAACATCTAGGTGAGTTTTAA 58.037 29.630 10.76 0.00 40.89 1.52
2697 2967 4.750098 ACGTGAGACAACAAAACATCTAGG 59.250 41.667 0.00 0.00 0.00 3.02
2705 2975 3.692101 ACCATCAACGTGAGACAACAAAA 59.308 39.130 0.00 0.00 0.00 2.44
2706 2976 3.064682 CACCATCAACGTGAGACAACAAA 59.935 43.478 0.00 0.00 32.77 2.83
2707 2977 2.611751 CACCATCAACGTGAGACAACAA 59.388 45.455 0.00 0.00 32.77 2.83
2708 2978 2.209273 CACCATCAACGTGAGACAACA 58.791 47.619 0.00 0.00 32.77 3.33
2709 2979 1.069906 GCACCATCAACGTGAGACAAC 60.070 52.381 0.00 0.00 32.77 3.32
2710 2980 1.225855 GCACCATCAACGTGAGACAA 58.774 50.000 0.00 0.00 32.77 3.18
2711 2981 0.943835 CGCACCATCAACGTGAGACA 60.944 55.000 0.00 0.00 33.40 3.41
2712 2982 1.781555 CGCACCATCAACGTGAGAC 59.218 57.895 0.00 0.00 33.40 3.36
2713 2983 2.027073 GCGCACCATCAACGTGAGA 61.027 57.895 0.30 0.00 33.40 3.27
2714 2984 1.840630 TTGCGCACCATCAACGTGAG 61.841 55.000 11.12 0.00 34.55 3.51
2715 2985 1.840630 CTTGCGCACCATCAACGTGA 61.841 55.000 11.12 0.00 32.77 4.35
2716 2986 1.440850 CTTGCGCACCATCAACGTG 60.441 57.895 11.12 0.00 0.00 4.49
2717 2987 1.444119 AACTTGCGCACCATCAACGT 61.444 50.000 11.12 0.00 0.00 3.99
2718 2988 0.998226 CAACTTGCGCACCATCAACG 60.998 55.000 11.12 0.00 0.00 4.10
2719 2989 1.277495 GCAACTTGCGCACCATCAAC 61.277 55.000 11.12 0.00 31.71 3.18
2720 2990 1.007502 GCAACTTGCGCACCATCAA 60.008 52.632 11.12 0.00 31.71 2.57
2721 2991 2.644418 GCAACTTGCGCACCATCA 59.356 55.556 11.12 0.00 31.71 3.07
2730 3000 1.079612 GCCCTCCATTGCAACTTGC 60.080 57.895 0.00 6.82 45.29 4.01
2731 3001 0.680618 TTGCCCTCCATTGCAACTTG 59.319 50.000 0.00 0.00 42.19 3.16
2732 3002 3.146218 TTGCCCTCCATTGCAACTT 57.854 47.368 0.00 0.00 42.19 2.66
2733 3003 4.950200 TTGCCCTCCATTGCAACT 57.050 50.000 0.00 0.00 42.19 3.16
2735 3005 0.469705 AGTGTTGCCCTCCATTGCAA 60.470 50.000 0.00 0.00 44.64 4.08
2736 3006 0.469705 AAGTGTTGCCCTCCATTGCA 60.470 50.000 0.00 0.00 35.27 4.08
2737 3007 0.037975 CAAGTGTTGCCCTCCATTGC 60.038 55.000 0.00 0.00 0.00 3.56
2756 3026 1.717937 CCGCTAGACATGCAACTGC 59.282 57.895 0.00 0.00 42.50 4.40
2757 3027 1.717937 GCCGCTAGACATGCAACTG 59.282 57.895 0.00 0.00 0.00 3.16
2758 3028 1.811266 CGCCGCTAGACATGCAACT 60.811 57.895 0.00 0.00 0.00 3.16
2759 3029 2.703409 CGCCGCTAGACATGCAAC 59.297 61.111 0.00 0.00 0.00 4.17
2760 3030 2.511373 CCGCCGCTAGACATGCAA 60.511 61.111 0.00 0.00 0.00 4.08
2761 3031 3.457263 TCCGCCGCTAGACATGCA 61.457 61.111 0.00 0.00 0.00 3.96
2762 3032 2.962253 GTCCGCCGCTAGACATGC 60.962 66.667 0.00 0.00 33.08 4.06
2763 3033 2.494445 TGTCCGCCGCTAGACATG 59.506 61.111 8.57 0.00 38.07 3.21
2764 3034 3.538614 ATGTCCGCCGCTAGACAT 58.461 55.556 16.21 16.21 46.08 3.06
2765 3035 2.494445 CATGTCCGCCGCTAGACA 59.506 61.111 13.56 13.56 46.39 3.41
2766 3036 2.962253 GCATGTCCGCCGCTAGAC 60.962 66.667 0.00 3.99 0.00 2.59
2767 3037 3.012859 TTGCATGTCCGCCGCTAGA 62.013 57.895 0.00 0.00 0.00 2.43
2768 3038 2.511373 TTGCATGTCCGCCGCTAG 60.511 61.111 0.00 0.00 0.00 3.42
2769 3039 1.950973 TAGTTGCATGTCCGCCGCTA 61.951 55.000 0.00 0.00 0.00 4.26
2770 3040 2.593468 ATAGTTGCATGTCCGCCGCT 62.593 55.000 0.00 0.00 0.00 5.52
2771 3041 2.105960 GATAGTTGCATGTCCGCCGC 62.106 60.000 0.00 0.00 0.00 6.53
2772 3042 1.498865 GGATAGTTGCATGTCCGCCG 61.499 60.000 0.00 0.00 0.00 6.46
2773 3043 1.166531 GGGATAGTTGCATGTCCGCC 61.167 60.000 0.00 0.00 31.51 6.13
2774 3044 1.498865 CGGGATAGTTGCATGTCCGC 61.499 60.000 0.00 0.00 31.51 5.54
2775 3045 0.880278 CCGGGATAGTTGCATGTCCG 60.880 60.000 0.00 0.00 31.51 4.79
2776 3046 0.180406 ACCGGGATAGTTGCATGTCC 59.820 55.000 6.32 0.00 0.00 4.02
2777 3047 1.134521 TCACCGGGATAGTTGCATGTC 60.135 52.381 6.32 0.00 0.00 3.06
2778 3048 0.908910 TCACCGGGATAGTTGCATGT 59.091 50.000 6.32 0.00 0.00 3.21
2779 3049 1.875514 CATCACCGGGATAGTTGCATG 59.124 52.381 6.32 0.00 33.95 4.06
2780 3050 1.768275 TCATCACCGGGATAGTTGCAT 59.232 47.619 6.32 0.00 33.95 3.96
2781 3051 1.199615 TCATCACCGGGATAGTTGCA 58.800 50.000 6.32 0.00 33.95 4.08
2782 3052 2.224281 TGATCATCACCGGGATAGTTGC 60.224 50.000 6.32 0.00 33.95 4.17
2783 3053 3.751479 TGATCATCACCGGGATAGTTG 57.249 47.619 6.32 0.00 33.95 3.16
2784 3054 5.087323 ACTATGATCATCACCGGGATAGTT 58.913 41.667 12.53 0.00 33.95 2.24
2785 3055 4.678256 ACTATGATCATCACCGGGATAGT 58.322 43.478 12.53 3.79 33.95 2.12
2786 3056 5.667539 AACTATGATCATCACCGGGATAG 57.332 43.478 12.53 3.11 33.95 2.08
2787 3057 5.542251 TCAAACTATGATCATCACCGGGATA 59.458 40.000 12.53 0.00 31.11 2.59
2788 3058 4.347876 TCAAACTATGATCATCACCGGGAT 59.652 41.667 12.53 2.55 32.02 3.85
2801 3071 8.539544 TGAATACATGAACTCCTCAAACTATGA 58.460 33.333 0.00 0.00 37.67 2.15
2803 3073 8.543774 AGTGAATACATGAACTCCTCAAACTAT 58.456 33.333 0.00 0.00 37.67 2.12
2847 3117 5.480205 GCCTCCTTTTAATAGAGTATCGGG 58.520 45.833 0.00 0.00 42.67 5.14
2998 3269 2.558795 TGACACAGAACTAGCTCCAGTC 59.441 50.000 0.00 0.00 0.00 3.51
3035 3306 1.002033 GGATGCGATTCCTCATGCAAC 60.002 52.381 0.00 0.00 41.22 4.17
3199 3470 6.976088 TGCAGCAAAGTATTTAGTAGCAAAA 58.024 32.000 0.00 0.00 35.03 2.44
3231 3502 1.770294 TCAACCACACCTGGAAAACC 58.230 50.000 0.00 0.00 40.55 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.