Multiple sequence alignment - TraesCS5A01G048900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G048900 chr5A 100.000 4723 0 0 1 4723 44974983 44979705 0.000000e+00 8722
1 TraesCS5A01G048900 chr5B 91.943 4158 211 55 327 4432 59156414 59160499 0.000000e+00 5709
2 TraesCS5A01G048900 chr5B 95.876 97 4 0 4627 4723 59160666 59160762 1.760000e-34 158
3 TraesCS5A01G048900 chr5D 94.712 2099 91 11 321 2410 56445662 56447749 0.000000e+00 3243
4 TraesCS5A01G048900 chr5D 92.274 1372 77 18 3077 4432 56448544 56449902 0.000000e+00 1919
5 TraesCS5A01G048900 chr5D 92.467 677 33 7 2411 3078 56447795 56448462 0.000000e+00 952
6 TraesCS5A01G048900 chr5D 85.567 194 13 10 4539 4723 56450064 56450251 6.240000e-44 189
7 TraesCS5A01G048900 chr2A 97.872 94 1 1 4630 4723 115710048 115710140 1.360000e-35 161
8 TraesCS5A01G048900 chr1A 92.857 112 5 3 4612 4723 554275632 554275524 4.890000e-35 159
9 TraesCS5A01G048900 chr1A 93.458 107 4 3 4618 4723 554280644 554280540 6.330000e-34 156
10 TraesCS5A01G048900 chr1A 93.458 107 4 3 4618 4723 554293049 554293153 6.330000e-34 156
11 TraesCS5A01G048900 chr1D 92.593 108 5 3 4618 4723 462465458 462465564 8.190000e-33 152
12 TraesCS5A01G048900 chr6A 91.743 109 5 3 4619 4723 602724619 602724511 1.060000e-31 148
13 TraesCS5A01G048900 chr3A 91.667 108 6 2 4615 4720 744061682 744061788 3.810000e-31 147


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G048900 chr5A 44974983 44979705 4722 False 8722.00 8722 100.0000 1 4723 1 chr5A.!!$F1 4722
1 TraesCS5A01G048900 chr5B 59156414 59160762 4348 False 2933.50 5709 93.9095 327 4723 2 chr5B.!!$F1 4396
2 TraesCS5A01G048900 chr5D 56445662 56450251 4589 False 1575.75 3243 91.2550 321 4723 4 chr5D.!!$F1 4402

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
469 493 0.036448 TCGTCTCCAACCTCTCGTCT 59.964 55.000 0.00 0.0 0.00 4.18 F
543 567 0.963355 TTTCTCCGCCATTTTCCCCG 60.963 55.000 0.00 0.0 0.00 5.73 F
659 684 1.138266 TCATTCCCGGAACCGATTCTC 59.862 52.381 15.07 0.0 42.83 2.87 F
1792 1830 1.098050 CAACCCACTTATGCTCAGCC 58.902 55.000 0.00 0.0 0.00 4.85 F
3290 3468 0.250901 ATGCTCAGTGAAACCGGCTT 60.251 50.000 0.00 0.0 37.80 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1506 1543 0.253044 CTGGGGAGTACACCACATGG 59.747 60.000 15.12 0.41 45.65 3.66 R
1508 1545 1.078823 TCTCTGGGGAGTACACCACAT 59.921 52.381 15.12 0.00 45.65 3.21 R
2243 2283 1.767088 CTGAGCCATCTCCATTCCTGA 59.233 52.381 0.00 0.00 38.58 3.86 R
3665 3844 0.592637 TGCTCACCTGCGAAAATGTG 59.407 50.000 0.00 0.00 35.36 3.21 R
4634 4899 0.035915 GAGCCTCTCTCACCCCAAAC 60.036 60.000 0.00 0.00 41.51 2.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.987408 CAAACCATTATGCCATGTCAGA 57.013 40.909 0.00 0.00 0.00 3.27
22 23 5.327616 CAAACCATTATGCCATGTCAGAA 57.672 39.130 0.00 0.00 0.00 3.02
23 24 5.345702 CAAACCATTATGCCATGTCAGAAG 58.654 41.667 0.00 0.00 0.00 2.85
24 25 4.508551 ACCATTATGCCATGTCAGAAGA 57.491 40.909 0.00 0.00 0.00 2.87
25 26 5.057843 ACCATTATGCCATGTCAGAAGAT 57.942 39.130 0.00 0.00 0.00 2.40
26 27 4.825634 ACCATTATGCCATGTCAGAAGATG 59.174 41.667 0.00 0.00 0.00 2.90
27 28 4.321008 CCATTATGCCATGTCAGAAGATGC 60.321 45.833 0.00 0.00 0.00 3.91
28 29 1.688772 ATGCCATGTCAGAAGATGCC 58.311 50.000 0.00 0.00 0.00 4.40
29 30 0.394762 TGCCATGTCAGAAGATGCCC 60.395 55.000 0.00 0.00 0.00 5.36
30 31 0.106819 GCCATGTCAGAAGATGCCCT 60.107 55.000 0.00 0.00 0.00 5.19
31 32 1.141657 GCCATGTCAGAAGATGCCCTA 59.858 52.381 0.00 0.00 0.00 3.53
32 33 2.224719 GCCATGTCAGAAGATGCCCTAT 60.225 50.000 0.00 0.00 0.00 2.57
33 34 3.409570 CCATGTCAGAAGATGCCCTATG 58.590 50.000 0.00 0.00 0.00 2.23
34 35 3.181447 CCATGTCAGAAGATGCCCTATGT 60.181 47.826 0.00 0.00 0.00 2.29
35 36 4.040829 CCATGTCAGAAGATGCCCTATGTA 59.959 45.833 0.00 0.00 0.00 2.29
36 37 5.280368 CCATGTCAGAAGATGCCCTATGTAT 60.280 44.000 0.00 0.00 0.00 2.29
37 38 5.474578 TGTCAGAAGATGCCCTATGTATC 57.525 43.478 0.00 0.00 36.42 2.24
38 39 5.150715 TGTCAGAAGATGCCCTATGTATCT 58.849 41.667 0.00 0.00 46.94 1.98
39 40 5.244851 TGTCAGAAGATGCCCTATGTATCTC 59.755 44.000 0.00 0.00 44.57 2.75
40 41 4.460731 TCAGAAGATGCCCTATGTATCTCG 59.539 45.833 0.00 0.00 44.57 4.04
41 42 4.219507 CAGAAGATGCCCTATGTATCTCGT 59.780 45.833 0.00 0.00 44.57 4.18
42 43 5.416013 CAGAAGATGCCCTATGTATCTCGTA 59.584 44.000 0.00 0.00 44.57 3.43
43 44 6.096141 CAGAAGATGCCCTATGTATCTCGTAT 59.904 42.308 0.00 0.00 44.57 3.06
44 45 6.320164 AGAAGATGCCCTATGTATCTCGTATC 59.680 42.308 0.00 0.00 44.57 2.24
45 46 5.761205 AGATGCCCTATGTATCTCGTATCT 58.239 41.667 0.00 0.00 42.01 1.98
46 47 5.592282 AGATGCCCTATGTATCTCGTATCTG 59.408 44.000 0.00 0.00 42.01 2.90
47 48 4.918588 TGCCCTATGTATCTCGTATCTGA 58.081 43.478 0.00 0.00 0.00 3.27
48 49 4.944317 TGCCCTATGTATCTCGTATCTGAG 59.056 45.833 0.00 0.00 37.33 3.35
49 50 4.944930 GCCCTATGTATCTCGTATCTGAGT 59.055 45.833 0.00 0.00 37.28 3.41
50 51 5.416326 GCCCTATGTATCTCGTATCTGAGTT 59.584 44.000 0.00 0.00 37.28 3.01
51 52 6.623986 GCCCTATGTATCTCGTATCTGAGTTG 60.624 46.154 0.00 0.00 37.28 3.16
52 53 6.431543 CCCTATGTATCTCGTATCTGAGTTGT 59.568 42.308 0.00 0.00 37.28 3.32
53 54 7.361371 CCCTATGTATCTCGTATCTGAGTTGTC 60.361 44.444 0.00 0.00 37.28 3.18
54 55 6.944234 ATGTATCTCGTATCTGAGTTGTCA 57.056 37.500 0.00 0.00 37.28 3.58
69 70 7.864108 TGAGTTGTCAGTCCAATATTATTGG 57.136 36.000 23.99 23.99 40.87 3.16
70 71 6.318648 TGAGTTGTCAGTCCAATATTATTGGC 59.681 38.462 24.81 19.98 39.38 4.52
71 72 6.426587 AGTTGTCAGTCCAATATTATTGGCT 58.573 36.000 24.81 21.42 39.38 4.75
72 73 6.319658 AGTTGTCAGTCCAATATTATTGGCTG 59.680 38.462 30.10 30.10 41.12 4.85
73 74 6.000246 TGTCAGTCCAATATTATTGGCTGA 58.000 37.500 32.03 32.03 43.53 4.26
75 76 6.000246 TCAGTCCAATATTATTGGCTGACA 58.000 37.500 32.03 22.56 42.29 3.58
76 77 6.604171 TCAGTCCAATATTATTGGCTGACAT 58.396 36.000 32.03 16.64 42.29 3.06
77 78 6.487668 TCAGTCCAATATTATTGGCTGACATG 59.512 38.462 32.03 22.43 42.29 3.21
78 79 6.263842 CAGTCCAATATTATTGGCTGACATGT 59.736 38.462 31.07 0.00 41.69 3.21
79 80 6.488006 AGTCCAATATTATTGGCTGACATGTC 59.512 38.462 24.81 19.27 39.38 3.06
80 81 6.262944 GTCCAATATTATTGGCTGACATGTCA 59.737 38.462 26.33 26.33 39.38 3.58
81 82 6.262944 TCCAATATTATTGGCTGACATGTCAC 59.737 38.462 24.56 19.35 39.38 3.67
82 83 6.441274 CAATATTATTGGCTGACATGTCACC 58.559 40.000 24.56 26.20 35.46 4.02
83 84 2.022764 TATTGGCTGACATGTCACCG 57.977 50.000 24.56 16.63 35.19 4.94
84 85 0.036732 ATTGGCTGACATGTCACCGT 59.963 50.000 24.56 17.84 35.19 4.83
85 86 0.884259 TTGGCTGACATGTCACCGTG 60.884 55.000 24.56 15.56 35.19 4.94
86 87 2.034879 GGCTGACATGTCACCGTGG 61.035 63.158 24.56 15.19 35.46 4.94
87 88 2.680913 GCTGACATGTCACCGTGGC 61.681 63.158 24.56 20.77 36.04 5.01
88 89 1.301637 CTGACATGTCACCGTGGCA 60.302 57.895 24.56 8.55 43.48 4.92
89 90 0.674581 CTGACATGTCACCGTGGCAT 60.675 55.000 24.56 12.96 44.60 4.40
92 93 3.985877 ATGTCACCGTGGCATGTG 58.014 55.556 17.76 12.36 41.79 3.21
93 94 1.073025 ATGTCACCGTGGCATGTGT 59.927 52.632 17.76 7.34 41.79 3.72
94 95 0.323302 ATGTCACCGTGGCATGTGTA 59.677 50.000 17.76 9.75 41.79 2.90
95 96 0.106894 TGTCACCGTGGCATGTGTAA 59.893 50.000 16.48 6.68 34.14 2.41
96 97 1.271108 TGTCACCGTGGCATGTGTAAT 60.271 47.619 16.48 0.00 34.14 1.89
97 98 1.810151 GTCACCGTGGCATGTGTAATT 59.190 47.619 16.48 0.00 34.14 1.40
98 99 2.080693 TCACCGTGGCATGTGTAATTC 58.919 47.619 16.48 0.00 34.14 2.17
99 100 2.083774 CACCGTGGCATGTGTAATTCT 58.916 47.619 5.89 0.00 0.00 2.40
100 101 2.487762 CACCGTGGCATGTGTAATTCTT 59.512 45.455 5.89 0.00 0.00 2.52
101 102 2.747446 ACCGTGGCATGTGTAATTCTTC 59.253 45.455 5.89 0.00 0.00 2.87
102 103 3.009723 CCGTGGCATGTGTAATTCTTCT 58.990 45.455 5.89 0.00 0.00 2.85
103 104 4.188462 CCGTGGCATGTGTAATTCTTCTA 58.812 43.478 5.89 0.00 0.00 2.10
104 105 4.816385 CCGTGGCATGTGTAATTCTTCTAT 59.184 41.667 5.89 0.00 0.00 1.98
105 106 5.296780 CCGTGGCATGTGTAATTCTTCTATT 59.703 40.000 5.89 0.00 0.00 1.73
106 107 6.183360 CCGTGGCATGTGTAATTCTTCTATTT 60.183 38.462 5.89 0.00 0.00 1.40
107 108 7.250569 CGTGGCATGTGTAATTCTTCTATTTT 58.749 34.615 0.00 0.00 0.00 1.82
108 109 7.218773 CGTGGCATGTGTAATTCTTCTATTTTG 59.781 37.037 0.00 0.00 0.00 2.44
109 110 7.489113 GTGGCATGTGTAATTCTTCTATTTTGG 59.511 37.037 0.00 0.00 0.00 3.28
110 111 7.178274 TGGCATGTGTAATTCTTCTATTTTGGT 59.822 33.333 0.00 0.00 0.00 3.67
111 112 7.702348 GGCATGTGTAATTCTTCTATTTTGGTC 59.298 37.037 0.00 0.00 0.00 4.02
112 113 7.702348 GCATGTGTAATTCTTCTATTTTGGTCC 59.298 37.037 0.00 0.00 0.00 4.46
113 114 8.739039 CATGTGTAATTCTTCTATTTTGGTCCA 58.261 33.333 0.00 0.00 0.00 4.02
114 115 8.698973 TGTGTAATTCTTCTATTTTGGTCCAA 57.301 30.769 0.00 0.00 0.00 3.53
115 116 9.137459 TGTGTAATTCTTCTATTTTGGTCCAAA 57.863 29.630 13.26 13.26 0.00 3.28
116 117 9.406828 GTGTAATTCTTCTATTTTGGTCCAAAC 57.593 33.333 16.88 2.15 32.79 2.93
117 118 9.137459 TGTAATTCTTCTATTTTGGTCCAAACA 57.863 29.630 16.88 8.80 32.79 2.83
118 119 9.974980 GTAATTCTTCTATTTTGGTCCAAACAA 57.025 29.630 16.88 3.80 32.79 2.83
120 121 8.887036 ATTCTTCTATTTTGGTCCAAACAAAC 57.113 30.769 16.88 0.00 37.53 2.93
121 122 7.411486 TCTTCTATTTTGGTCCAAACAAACA 57.589 32.000 16.88 2.26 37.53 2.83
122 123 7.488322 TCTTCTATTTTGGTCCAAACAAACAG 58.512 34.615 16.88 10.34 37.53 3.16
123 124 6.783708 TCTATTTTGGTCCAAACAAACAGT 57.216 33.333 16.88 0.00 37.53 3.55
124 125 6.801575 TCTATTTTGGTCCAAACAAACAGTC 58.198 36.000 16.88 0.00 37.53 3.51
125 126 4.873746 TTTTGGTCCAAACAAACAGTCA 57.126 36.364 16.88 0.00 37.53 3.41
126 127 4.873746 TTTGGTCCAAACAAACAGTCAA 57.126 36.364 13.26 0.00 33.26 3.18
127 128 4.448537 TTGGTCCAAACAAACAGTCAAG 57.551 40.909 0.40 0.00 0.00 3.02
128 129 3.691575 TGGTCCAAACAAACAGTCAAGA 58.308 40.909 0.00 0.00 0.00 3.02
129 130 4.277476 TGGTCCAAACAAACAGTCAAGAT 58.723 39.130 0.00 0.00 0.00 2.40
130 131 5.441500 TGGTCCAAACAAACAGTCAAGATA 58.558 37.500 0.00 0.00 0.00 1.98
131 132 5.888724 TGGTCCAAACAAACAGTCAAGATAA 59.111 36.000 0.00 0.00 0.00 1.75
132 133 6.378564 TGGTCCAAACAAACAGTCAAGATAAA 59.621 34.615 0.00 0.00 0.00 1.40
133 134 7.093727 TGGTCCAAACAAACAGTCAAGATAAAA 60.094 33.333 0.00 0.00 0.00 1.52
134 135 7.762159 GGTCCAAACAAACAGTCAAGATAAAAA 59.238 33.333 0.00 0.00 0.00 1.94
157 158 9.847224 AAAAATATATTCATAAGGTCAGACCGT 57.153 29.630 14.32 13.68 44.90 4.83
158 159 8.833231 AAATATATTCATAAGGTCAGACCGTG 57.167 34.615 17.65 15.32 44.90 4.94
159 160 7.776618 ATATATTCATAAGGTCAGACCGTGA 57.223 36.000 17.65 17.14 44.90 4.35
166 167 4.750460 TCAGACCGTGACTTGTGC 57.250 55.556 0.00 0.00 0.00 4.57
167 168 1.819905 TCAGACCGTGACTTGTGCA 59.180 52.632 0.00 0.00 0.00 4.57
168 169 0.392706 TCAGACCGTGACTTGTGCAT 59.607 50.000 0.00 0.00 0.00 3.96
169 170 0.514255 CAGACCGTGACTTGTGCATG 59.486 55.000 0.00 0.00 0.00 4.06
170 171 0.603707 AGACCGTGACTTGTGCATGG 60.604 55.000 0.00 0.00 45.76 3.66
171 172 1.577328 GACCGTGACTTGTGCATGGG 61.577 60.000 0.00 0.00 44.82 4.00
172 173 1.600636 CCGTGACTTGTGCATGGGT 60.601 57.895 0.00 0.00 38.49 4.51
173 174 1.172180 CCGTGACTTGTGCATGGGTT 61.172 55.000 0.00 0.00 38.49 4.11
174 175 0.667993 CGTGACTTGTGCATGGGTTT 59.332 50.000 0.00 0.00 0.00 3.27
175 176 1.066908 CGTGACTTGTGCATGGGTTTT 59.933 47.619 0.00 0.00 0.00 2.43
176 177 2.481104 CGTGACTTGTGCATGGGTTTTT 60.481 45.455 0.00 0.00 0.00 1.94
177 178 3.243234 CGTGACTTGTGCATGGGTTTTTA 60.243 43.478 0.00 0.00 0.00 1.52
178 179 4.688021 GTGACTTGTGCATGGGTTTTTAA 58.312 39.130 0.00 0.00 0.00 1.52
179 180 4.744631 GTGACTTGTGCATGGGTTTTTAAG 59.255 41.667 0.00 0.00 0.00 1.85
180 181 4.404073 TGACTTGTGCATGGGTTTTTAAGT 59.596 37.500 0.00 0.00 0.00 2.24
181 182 5.594725 TGACTTGTGCATGGGTTTTTAAGTA 59.405 36.000 0.00 0.00 0.00 2.24
182 183 6.084326 ACTTGTGCATGGGTTTTTAAGTAG 57.916 37.500 0.00 0.00 0.00 2.57
183 184 5.830991 ACTTGTGCATGGGTTTTTAAGTAGA 59.169 36.000 0.00 0.00 0.00 2.59
184 185 6.322712 ACTTGTGCATGGGTTTTTAAGTAGAA 59.677 34.615 0.00 0.00 0.00 2.10
185 186 6.716934 TGTGCATGGGTTTTTAAGTAGAAA 57.283 33.333 0.00 0.00 0.00 2.52
186 187 7.113658 TGTGCATGGGTTTTTAAGTAGAAAA 57.886 32.000 0.00 0.00 0.00 2.29
187 188 7.731054 TGTGCATGGGTTTTTAAGTAGAAAAT 58.269 30.769 0.00 0.00 0.00 1.82
188 189 8.207545 TGTGCATGGGTTTTTAAGTAGAAAATT 58.792 29.630 0.00 0.00 0.00 1.82
189 190 9.051679 GTGCATGGGTTTTTAAGTAGAAAATTT 57.948 29.630 0.00 0.00 0.00 1.82
210 211 8.532977 AATTTAATACAACAGGTGAAATGTGC 57.467 30.769 0.00 0.00 0.00 4.57
211 212 4.519540 AATACAACAGGTGAAATGTGCC 57.480 40.909 0.00 0.00 0.00 5.01
212 213 1.774110 ACAACAGGTGAAATGTGCCA 58.226 45.000 0.00 0.00 0.00 4.92
213 214 1.408702 ACAACAGGTGAAATGTGCCAC 59.591 47.619 0.00 0.00 0.00 5.01
214 215 1.408340 CAACAGGTGAAATGTGCCACA 59.592 47.619 0.00 0.00 35.13 4.17
215 216 1.774110 ACAGGTGAAATGTGCCACAA 58.226 45.000 0.00 0.00 35.13 3.33
216 217 1.682854 ACAGGTGAAATGTGCCACAAG 59.317 47.619 0.00 0.00 35.13 3.16
217 218 1.955778 CAGGTGAAATGTGCCACAAGA 59.044 47.619 0.00 0.00 35.13 3.02
218 219 2.559668 CAGGTGAAATGTGCCACAAGAT 59.440 45.455 0.00 0.00 35.13 2.40
219 220 2.821969 AGGTGAAATGTGCCACAAGATC 59.178 45.455 0.00 1.20 35.13 2.75
220 221 2.557924 GGTGAAATGTGCCACAAGATCA 59.442 45.455 0.00 4.04 35.13 2.92
221 222 3.568538 GTGAAATGTGCCACAAGATCAC 58.431 45.455 18.73 18.73 34.41 3.06
222 223 3.004629 GTGAAATGTGCCACAAGATCACA 59.995 43.478 24.20 9.79 43.72 3.58
223 224 3.635836 TGAAATGTGCCACAAGATCACAA 59.364 39.130 0.00 0.00 42.97 3.33
224 225 3.928727 AATGTGCCACAAGATCACAAG 57.071 42.857 0.00 0.00 42.97 3.16
225 226 2.346766 TGTGCCACAAGATCACAAGT 57.653 45.000 0.00 0.00 37.73 3.16
226 227 2.653726 TGTGCCACAAGATCACAAGTT 58.346 42.857 0.00 0.00 37.73 2.66
227 228 2.358582 TGTGCCACAAGATCACAAGTTG 59.641 45.455 0.00 0.00 37.73 3.16
228 229 2.618241 GTGCCACAAGATCACAAGTTGA 59.382 45.455 10.54 0.00 39.11 3.18
229 230 3.066621 GTGCCACAAGATCACAAGTTGAA 59.933 43.478 10.54 0.00 37.92 2.69
230 231 3.698539 TGCCACAAGATCACAAGTTGAAA 59.301 39.130 10.54 0.00 37.92 2.69
231 232 4.159321 TGCCACAAGATCACAAGTTGAAAA 59.841 37.500 10.54 0.00 37.92 2.29
232 233 4.741676 GCCACAAGATCACAAGTTGAAAAG 59.258 41.667 10.54 0.00 37.92 2.27
233 234 5.679638 GCCACAAGATCACAAGTTGAAAAGT 60.680 40.000 10.54 0.00 37.92 2.66
234 235 5.745294 CCACAAGATCACAAGTTGAAAAGTG 59.255 40.000 10.54 8.33 37.92 3.16
235 236 6.404623 CCACAAGATCACAAGTTGAAAAGTGA 60.405 38.462 10.54 2.56 44.16 3.41
236 237 6.690098 CACAAGATCACAAGTTGAAAAGTGAG 59.310 38.462 10.54 0.00 43.39 3.51
237 238 6.599244 ACAAGATCACAAGTTGAAAAGTGAGA 59.401 34.615 10.54 0.00 43.39 3.27
238 239 7.121168 ACAAGATCACAAGTTGAAAAGTGAGAA 59.879 33.333 10.54 0.00 43.39 2.87
239 240 7.630242 AGATCACAAGTTGAAAAGTGAGAAA 57.370 32.000 10.54 0.00 43.39 2.52
240 241 8.055279 AGATCACAAGTTGAAAAGTGAGAAAA 57.945 30.769 10.54 0.00 43.39 2.29
241 242 8.689972 AGATCACAAGTTGAAAAGTGAGAAAAT 58.310 29.630 10.54 0.00 43.39 1.82
242 243 9.950680 GATCACAAGTTGAAAAGTGAGAAAATA 57.049 29.630 10.54 0.00 43.39 1.40
287 288 9.771534 TCATAAAATTTTCCAAGTAAAACAGGG 57.228 29.630 6.72 0.00 31.50 4.45
288 289 8.998377 CATAAAATTTTCCAAGTAAAACAGGGG 58.002 33.333 6.72 0.00 31.50 4.79
289 290 5.560722 AATTTTCCAAGTAAAACAGGGGG 57.439 39.130 0.00 0.00 31.50 5.40
290 291 3.691698 TTTCCAAGTAAAACAGGGGGT 57.308 42.857 0.00 0.00 0.00 4.95
291 292 3.691698 TTCCAAGTAAAACAGGGGGTT 57.308 42.857 0.00 0.00 42.98 4.11
292 293 2.952116 TCCAAGTAAAACAGGGGGTTG 58.048 47.619 0.00 0.00 40.35 3.77
293 294 2.514582 TCCAAGTAAAACAGGGGGTTGA 59.485 45.455 0.00 0.00 40.35 3.18
294 295 3.052793 TCCAAGTAAAACAGGGGGTTGAA 60.053 43.478 0.00 0.00 40.35 2.69
295 296 3.901222 CCAAGTAAAACAGGGGGTTGAAT 59.099 43.478 0.00 0.00 40.35 2.57
296 297 4.346709 CCAAGTAAAACAGGGGGTTGAATT 59.653 41.667 0.00 0.00 40.35 2.17
297 298 5.510690 CCAAGTAAAACAGGGGGTTGAATTC 60.511 44.000 0.00 0.00 40.35 2.17
298 299 5.074746 AGTAAAACAGGGGGTTGAATTCT 57.925 39.130 7.05 0.00 40.35 2.40
299 300 4.832823 AGTAAAACAGGGGGTTGAATTCTG 59.167 41.667 7.05 0.00 40.35 3.02
300 301 1.632589 AACAGGGGGTTGAATTCTGC 58.367 50.000 7.05 0.00 38.60 4.26
301 302 0.779997 ACAGGGGGTTGAATTCTGCT 59.220 50.000 7.05 0.00 0.00 4.24
302 303 1.180029 CAGGGGGTTGAATTCTGCTG 58.820 55.000 7.05 0.00 0.00 4.41
303 304 0.040204 AGGGGGTTGAATTCTGCTGG 59.960 55.000 7.05 0.00 0.00 4.85
304 305 0.972471 GGGGGTTGAATTCTGCTGGG 60.972 60.000 7.05 0.00 0.00 4.45
305 306 0.039618 GGGGTTGAATTCTGCTGGGA 59.960 55.000 7.05 0.00 0.00 4.37
306 307 1.549950 GGGGTTGAATTCTGCTGGGAA 60.550 52.381 7.05 0.00 0.00 3.97
307 308 2.247358 GGGTTGAATTCTGCTGGGAAA 58.753 47.619 7.05 0.00 0.00 3.13
308 309 2.232208 GGGTTGAATTCTGCTGGGAAAG 59.768 50.000 7.05 0.00 0.00 2.62
309 310 3.157087 GGTTGAATTCTGCTGGGAAAGA 58.843 45.455 7.05 0.00 0.00 2.52
310 311 3.573967 GGTTGAATTCTGCTGGGAAAGAA 59.426 43.478 7.05 0.00 36.87 2.52
311 312 4.221482 GGTTGAATTCTGCTGGGAAAGAAT 59.779 41.667 7.05 0.00 43.37 2.40
312 313 5.418840 GGTTGAATTCTGCTGGGAAAGAATA 59.581 40.000 7.05 0.00 41.24 1.75
313 314 6.405176 GGTTGAATTCTGCTGGGAAAGAATAG 60.405 42.308 7.05 0.00 41.24 1.73
314 315 5.195940 TGAATTCTGCTGGGAAAGAATAGG 58.804 41.667 7.05 0.00 41.24 2.57
315 316 3.652057 TTCTGCTGGGAAAGAATAGGG 57.348 47.619 0.00 0.00 0.00 3.53
316 317 2.845659 TCTGCTGGGAAAGAATAGGGA 58.154 47.619 0.00 0.00 0.00 4.20
317 318 3.397527 TCTGCTGGGAAAGAATAGGGAT 58.602 45.455 0.00 0.00 0.00 3.85
318 319 3.137176 TCTGCTGGGAAAGAATAGGGATG 59.863 47.826 0.00 0.00 0.00 3.51
319 320 2.852449 TGCTGGGAAAGAATAGGGATGT 59.148 45.455 0.00 0.00 0.00 3.06
387 388 1.195448 GACTCTTGCAACATGTGACGG 59.805 52.381 0.00 0.00 0.00 4.79
392 393 0.888736 TGCAACATGTGACGGAAGGG 60.889 55.000 0.00 0.00 0.00 3.95
393 394 1.586154 GCAACATGTGACGGAAGGGG 61.586 60.000 0.00 0.00 0.00 4.79
403 404 0.116541 ACGGAAGGGGAGGAGAAGAA 59.883 55.000 0.00 0.00 0.00 2.52
404 405 0.827368 CGGAAGGGGAGGAGAAGAAG 59.173 60.000 0.00 0.00 0.00 2.85
469 493 0.036448 TCGTCTCCAACCTCTCGTCT 59.964 55.000 0.00 0.00 0.00 4.18
543 567 0.963355 TTTCTCCGCCATTTTCCCCG 60.963 55.000 0.00 0.00 0.00 5.73
544 568 2.045340 CTCCGCCATTTTCCCCGT 60.045 61.111 0.00 0.00 0.00 5.28
545 569 2.045731 TCCGCCATTTTCCCCGTC 60.046 61.111 0.00 0.00 0.00 4.79
546 570 3.138128 CCGCCATTTTCCCCGTCC 61.138 66.667 0.00 0.00 0.00 4.79
659 684 1.138266 TCATTCCCGGAACCGATTCTC 59.862 52.381 15.07 0.00 42.83 2.87
821 847 2.615227 AATCATCAGAGGGTGGGCGC 62.615 60.000 0.00 0.00 0.00 6.53
869 895 2.093447 TCCTCTCGAAATTGGAGCTTCC 60.093 50.000 0.00 0.00 36.96 3.46
871 897 1.628340 TCTCGAAATTGGAGCTTCCCA 59.372 47.619 0.00 0.00 35.03 4.37
875 901 2.460669 GAAATTGGAGCTTCCCATGGT 58.539 47.619 11.73 0.00 35.03 3.55
961 987 4.456806 GCGTTGGGCGATAGGATT 57.543 55.556 0.00 0.00 44.77 3.01
1019 1045 7.620880 TGGTGTATGAAAAACTATCTACTGCT 58.379 34.615 0.00 0.00 0.00 4.24
1178 1205 1.819632 CTCCAGGTAACGGCCATGC 60.820 63.158 2.24 0.00 46.39 4.06
1241 1268 2.297701 AGGTGCAAACAAGATCGTGTT 58.702 42.857 19.57 19.57 43.58 3.32
1279 1306 9.288576 TGTTGATAATGTTCTGGATCATATTCC 57.711 33.333 0.00 0.00 36.24 3.01
1295 1328 5.250543 TCATATTCCATATGTGGTAGTGGGG 59.749 44.000 8.51 0.00 46.16 4.96
1361 1394 8.598041 AGGACTAATTTATCCTATAGCAGGTTG 58.402 37.037 8.14 0.00 43.85 3.77
1397 1430 7.229306 TCACATGCCAATTTTATAGCCTAAGAG 59.771 37.037 0.00 0.00 0.00 2.85
1440 1473 3.191371 GTGCTGTCCATTTCTAGGTTTGG 59.809 47.826 0.00 0.00 0.00 3.28
1480 1513 2.095692 CGCATTCATCAATCGTGGTTCA 59.904 45.455 0.00 0.00 0.00 3.18
1483 1516 4.439153 GCATTCATCAATCGTGGTTCACAT 60.439 41.667 0.00 0.00 33.40 3.21
1501 1538 4.831710 TCACATTGTTTGGTGGATCAATGA 59.168 37.500 18.96 0.00 45.40 2.57
1506 1543 5.895636 TGTTTGGTGGATCAATGATGTAC 57.104 39.130 0.00 0.00 0.00 2.90
1508 1545 4.582973 TTGGTGGATCAATGATGTACCA 57.417 40.909 18.57 18.57 34.80 3.25
1610 1648 6.263168 AGCCTATTTGGATTGTAGAATTTCCG 59.737 38.462 0.00 0.00 38.35 4.30
1660 1698 7.289782 CCATGGGGATTTTTCCTATAATTGTCA 59.710 37.037 2.85 0.00 35.59 3.58
1791 1829 2.113860 TCAACCCACTTATGCTCAGC 57.886 50.000 0.00 0.00 0.00 4.26
1792 1830 1.098050 CAACCCACTTATGCTCAGCC 58.902 55.000 0.00 0.00 0.00 4.85
1894 1933 5.997746 TCTAGCTGTCATTGCTTAAACAGTT 59.002 36.000 0.00 7.66 40.92 3.16
1945 1984 4.469657 TCCTTTGCCATGTATATTGGGTC 58.530 43.478 6.76 0.00 34.66 4.46
2009 2048 2.439507 TCTGGGCAGATTTATCCTCCAC 59.560 50.000 0.00 0.00 31.41 4.02
2014 2053 2.615912 GCAGATTTATCCTCCACTGTGC 59.384 50.000 1.29 0.00 0.00 4.57
2171 2210 4.503910 CCTTGTAGCTGCATACTGTTGTA 58.496 43.478 4.98 0.00 0.00 2.41
2496 2581 2.239907 GGCATAGAACCCAGGAGAGTTT 59.760 50.000 0.00 0.00 0.00 2.66
2497 2582 3.308473 GGCATAGAACCCAGGAGAGTTTT 60.308 47.826 0.00 0.00 0.00 2.43
2556 2641 5.192923 TCATTATTTACCCCAGGTGTAGCTT 59.807 40.000 0.00 0.00 36.19 3.74
2578 2663 6.466097 GCTTGATTAACAGAAACTTCGTATGC 59.534 38.462 0.00 0.00 0.00 3.14
2616 2701 7.739295 TGATTTTCTAGTAAGTTTGATCGCAC 58.261 34.615 0.00 0.00 0.00 5.34
2646 2731 7.364522 TCATGTTGTCTCAAGCTGTAAATAC 57.635 36.000 0.00 0.00 0.00 1.89
2651 2736 7.661437 TGTTGTCTCAAGCTGTAAATACAAGAT 59.339 33.333 0.00 0.00 35.50 2.40
2670 2755 5.810080 AGATAGTATTTGTGGGGTAGAGC 57.190 43.478 0.00 0.00 0.00 4.09
2712 2797 7.095910 TGTTTTTATATCACAAACCCTGCATG 58.904 34.615 0.00 0.00 30.64 4.06
2723 2808 5.127031 ACAAACCCTGCATGTATGGATTTAC 59.873 40.000 11.92 0.00 0.00 2.01
2758 2843 0.600057 GGCCAGCCTTCAAAGTCAAG 59.400 55.000 0.00 0.00 0.00 3.02
2820 2905 4.729868 ACTATTTCTCTGTGGGCAAGTTT 58.270 39.130 0.00 0.00 0.00 2.66
2884 2970 4.574674 ATGTATGCTCCTGGAAAGTTGA 57.425 40.909 0.00 0.00 0.00 3.18
2911 2997 2.902705 TGCTTGTCTCTGTTACCGTT 57.097 45.000 0.00 0.00 0.00 4.44
2912 2998 2.479837 TGCTTGTCTCTGTTACCGTTG 58.520 47.619 0.00 0.00 0.00 4.10
2913 2999 2.159014 TGCTTGTCTCTGTTACCGTTGT 60.159 45.455 0.00 0.00 0.00 3.32
2914 3000 3.068448 TGCTTGTCTCTGTTACCGTTGTA 59.932 43.478 0.00 0.00 0.00 2.41
2915 3001 3.427863 GCTTGTCTCTGTTACCGTTGTAC 59.572 47.826 0.00 0.00 0.00 2.90
2916 3002 4.613944 CTTGTCTCTGTTACCGTTGTACA 58.386 43.478 0.00 0.00 0.00 2.90
2995 3086 9.860898 AAGAAGGATGTAAAGACAATAAAATGC 57.139 29.630 0.00 0.00 39.59 3.56
2996 3087 9.247861 AGAAGGATGTAAAGACAATAAAATGCT 57.752 29.630 0.00 0.00 39.59 3.79
3031 3124 6.183360 GCATGTTCTCCTTCTCTGTTCCTATA 60.183 42.308 0.00 0.00 0.00 1.31
3032 3125 6.777213 TGTTCTCCTTCTCTGTTCCTATAC 57.223 41.667 0.00 0.00 0.00 1.47
3035 3128 5.697067 TCTCCTTCTCTGTTCCTATACCTC 58.303 45.833 0.00 0.00 0.00 3.85
3061 3156 4.549458 CATGTTTAAGCTCCCTTTGTGTG 58.451 43.478 0.00 0.00 32.47 3.82
3229 3407 9.107367 GCTATCTGCAATTTTATTACGAACATC 57.893 33.333 0.00 0.00 42.31 3.06
3242 3420 4.182693 ACGAACATCGGAGTATGTCAAA 57.817 40.909 4.66 0.00 45.59 2.69
3290 3468 0.250901 ATGCTCAGTGAAACCGGCTT 60.251 50.000 0.00 0.00 37.80 4.35
3295 3473 3.687698 GCTCAGTGAAACCGGCTTATTTA 59.312 43.478 0.00 0.00 37.80 1.40
3297 3475 5.163652 GCTCAGTGAAACCGGCTTATTTAAT 60.164 40.000 0.00 0.00 37.80 1.40
3299 3477 6.177610 TCAGTGAAACCGGCTTATTTAATCT 58.822 36.000 0.00 0.00 37.80 2.40
3300 3478 7.332557 TCAGTGAAACCGGCTTATTTAATCTA 58.667 34.615 0.00 0.00 37.80 1.98
3301 3479 7.990886 TCAGTGAAACCGGCTTATTTAATCTAT 59.009 33.333 0.00 0.00 37.80 1.98
3304 3482 9.233232 GTGAAACCGGCTTATTTAATCTATTTG 57.767 33.333 0.00 0.00 0.00 2.32
3305 3483 8.962679 TGAAACCGGCTTATTTAATCTATTTGT 58.037 29.630 0.00 0.00 0.00 2.83
3306 3484 9.447040 GAAACCGGCTTATTTAATCTATTTGTC 57.553 33.333 0.00 0.00 0.00 3.18
3391 3570 4.866508 TTCATATAGTGTCCCATCGACC 57.133 45.455 0.00 0.00 41.18 4.79
3417 3596 3.593096 CGGTATGTGCATATGATGAGCT 58.407 45.455 6.97 0.00 0.00 4.09
3468 3647 7.569639 GGTGATTTACCTCTTCTAATTTCCC 57.430 40.000 0.00 0.00 46.51 3.97
3469 3648 7.347252 GGTGATTTACCTCTTCTAATTTCCCT 58.653 38.462 0.00 0.00 46.51 4.20
3470 3649 7.834681 GGTGATTTACCTCTTCTAATTTCCCTT 59.165 37.037 0.00 0.00 46.51 3.95
3471 3650 9.244292 GTGATTTACCTCTTCTAATTTCCCTTT 57.756 33.333 0.00 0.00 0.00 3.11
3472 3651 9.462606 TGATTTACCTCTTCTAATTTCCCTTTC 57.537 33.333 0.00 0.00 0.00 2.62
3595 3774 1.965930 CTGCGCTTTGCTACCACCA 60.966 57.895 9.73 0.00 46.63 4.17
3665 3844 0.889186 ATTGCTCACACCACCCGTTC 60.889 55.000 0.00 0.00 0.00 3.95
3751 3931 0.391228 TCAGCGCTTGTACCAAGTGA 59.609 50.000 7.50 6.68 0.00 3.41
3752 3932 1.001974 TCAGCGCTTGTACCAAGTGAT 59.998 47.619 7.50 11.36 0.00 3.06
3763 3943 1.171308 CCAAGTGATGCCCTGTTCTG 58.829 55.000 0.00 0.00 0.00 3.02
3805 3985 7.548075 AGTTGGGAACACTTTGTATTATACTCG 59.452 37.037 3.92 0.00 42.67 4.18
3843 4023 3.061139 CGATCGGTCGCATAGAAGAAAAC 60.061 47.826 4.56 0.00 41.49 2.43
3846 4026 2.014857 GGTCGCATAGAAGAAAACCCC 58.985 52.381 0.00 0.00 0.00 4.95
3864 4044 2.084681 CGAAGCGCGTAAACGGACT 61.085 57.895 8.43 0.00 40.23 3.85
3902 4090 2.102588 AGAGTGCGGGTGTGGATAATAC 59.897 50.000 0.00 0.00 0.00 1.89
3906 4094 1.202557 GCGGGTGTGGATAATACGGAA 60.203 52.381 0.00 0.00 0.00 4.30
3932 4120 5.523883 AACTGTATTTTGCTTACCCCCTA 57.476 39.130 0.00 0.00 0.00 3.53
3976 4164 0.948141 GCACTGTCAGACCTCACTGC 60.948 60.000 6.91 0.00 37.75 4.40
4017 4205 1.121407 TGTCCTGTGTCCTGTCCTGG 61.121 60.000 0.00 0.00 0.00 4.45
4102 4291 8.330466 TGTCAATGATTGGTAATTAAACGACT 57.670 30.769 5.20 0.00 0.00 4.18
4168 4359 5.648033 TTACGTACATCTCTACAGCGTAG 57.352 43.478 0.00 8.77 35.34 3.51
4193 4384 5.678483 CAGCGAATAAGTGCATGTTTGTATC 59.322 40.000 0.00 0.00 0.00 2.24
4213 4404 7.304735 TGTATCGTACGTGTATTTGTAGTTGT 58.695 34.615 16.05 0.00 0.00 3.32
4214 4405 6.621737 ATCGTACGTGTATTTGTAGTTGTG 57.378 37.500 16.05 0.00 0.00 3.33
4266 4459 1.516423 GCCAAGGGACCGTAGAGAC 59.484 63.158 0.00 0.00 0.00 3.36
4309 4502 4.756642 TCAAGTCCATGTTTGCTCTGTAAG 59.243 41.667 0.00 0.00 0.00 2.34
4338 4533 3.317711 CAGGCTGTGGTGTTGAAATGTTA 59.682 43.478 6.28 0.00 0.00 2.41
4367 4562 9.567776 TTTCTGAATAATGTTCCTCTTACACAA 57.432 29.630 0.00 0.00 0.00 3.33
4368 4563 8.547967 TCTGAATAATGTTCCTCTTACACAAC 57.452 34.615 0.00 0.00 0.00 3.32
4392 4587 5.177511 CGCCATATATGTTGTGGTCAGTTAG 59.822 44.000 11.73 0.00 35.44 2.34
4411 4609 9.710900 TCAGTTAGTAAGGAATGTATATGCATG 57.289 33.333 10.16 0.00 0.00 4.06
4428 4626 6.961359 ATGCATGATCACAAAAGTGAAATG 57.039 33.333 0.00 14.98 36.88 2.32
4432 4630 8.089597 TGCATGATCACAAAAGTGAAATGTTAT 58.910 29.630 18.01 0.00 36.88 1.89
4433 4631 8.377681 GCATGATCACAAAAGTGAAATGTTATG 58.622 33.333 18.01 9.93 36.88 1.90
4434 4632 9.414295 CATGATCACAAAAGTGAAATGTTATGT 57.586 29.630 0.00 0.00 36.88 2.29
4436 4634 9.814899 TGATCACAAAAGTGAAATGTTATGTTT 57.185 25.926 2.13 0.00 36.88 2.83
4468 4689 9.944663 TCAAACTTATTATTATCGCAAATGGTC 57.055 29.630 0.00 0.00 0.00 4.02
4478 4699 4.377839 TCGCAAATGGTCAACTGAAAAA 57.622 36.364 0.00 0.00 0.00 1.94
4480 4701 4.981674 TCGCAAATGGTCAACTGAAAAATC 59.018 37.500 0.00 0.00 0.00 2.17
4482 4703 4.981674 GCAAATGGTCAACTGAAAAATCGA 59.018 37.500 0.00 0.00 0.00 3.59
4483 4704 5.107875 GCAAATGGTCAACTGAAAAATCGAC 60.108 40.000 0.00 0.00 0.00 4.20
4484 4705 4.766404 ATGGTCAACTGAAAAATCGACC 57.234 40.909 0.00 0.00 42.64 4.79
4485 4706 3.815809 TGGTCAACTGAAAAATCGACCT 58.184 40.909 7.79 0.00 42.74 3.85
4486 4707 3.813166 TGGTCAACTGAAAAATCGACCTC 59.187 43.478 7.79 0.00 42.74 3.85
4487 4708 3.813166 GGTCAACTGAAAAATCGACCTCA 59.187 43.478 0.00 0.00 39.84 3.86
4503 4724 4.320202 CGACCTCAATGTTTGGGTACTTTG 60.320 45.833 0.00 0.00 35.34 2.77
4554 4814 8.680863 TAGGAACTCAGACGAAATGGAACACC 62.681 46.154 0.00 0.00 41.20 4.16
4614 4879 7.178274 ACATATTTTGATGTTAGCACCAAGGAA 59.822 33.333 0.00 0.00 36.64 3.36
4617 4882 7.531857 TTTTGATGTTAGCACCAAGGAAATA 57.468 32.000 0.00 0.00 0.00 1.40
4618 4883 7.531857 TTTGATGTTAGCACCAAGGAAATAA 57.468 32.000 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.987408 TCTGACATGGCATAATGGTTTG 57.013 40.909 0.00 0.00 31.46 2.93
1 2 5.263599 TCTTCTGACATGGCATAATGGTTT 58.736 37.500 0.00 0.00 31.46 3.27
2 3 4.858850 TCTTCTGACATGGCATAATGGTT 58.141 39.130 0.00 0.00 31.46 3.67
3 4 4.508551 TCTTCTGACATGGCATAATGGT 57.491 40.909 0.00 0.00 31.46 3.55
4 5 4.321008 GCATCTTCTGACATGGCATAATGG 60.321 45.833 0.00 0.00 31.46 3.16
5 6 4.321008 GGCATCTTCTGACATGGCATAATG 60.321 45.833 0.00 5.00 43.40 1.90
6 7 3.825014 GGCATCTTCTGACATGGCATAAT 59.175 43.478 0.00 0.00 43.40 1.28
7 8 3.216800 GGCATCTTCTGACATGGCATAA 58.783 45.455 0.00 0.00 43.40 1.90
8 9 2.487805 GGGCATCTTCTGACATGGCATA 60.488 50.000 0.00 0.00 45.21 3.14
9 10 1.688772 GGCATCTTCTGACATGGCAT 58.311 50.000 0.00 0.00 43.40 4.40
10 11 0.394762 GGGCATCTTCTGACATGGCA 60.395 55.000 18.52 0.00 45.21 4.92
11 12 0.106819 AGGGCATCTTCTGACATGGC 60.107 55.000 11.83 11.83 43.23 4.40
12 13 3.181447 ACATAGGGCATCTTCTGACATGG 60.181 47.826 0.00 0.00 32.82 3.66
13 14 4.082665 ACATAGGGCATCTTCTGACATG 57.917 45.455 0.00 0.00 32.82 3.21
14 15 5.784390 AGATACATAGGGCATCTTCTGACAT 59.216 40.000 0.00 0.00 32.82 3.06
15 16 5.150715 AGATACATAGGGCATCTTCTGACA 58.849 41.667 0.00 0.00 32.82 3.58
16 17 5.621104 CGAGATACATAGGGCATCTTCTGAC 60.621 48.000 0.00 0.00 0.00 3.51
17 18 4.460731 CGAGATACATAGGGCATCTTCTGA 59.539 45.833 0.00 0.00 0.00 3.27
18 19 4.219507 ACGAGATACATAGGGCATCTTCTG 59.780 45.833 0.00 0.00 0.00 3.02
19 20 4.411927 ACGAGATACATAGGGCATCTTCT 58.588 43.478 0.00 0.00 0.00 2.85
20 21 4.792521 ACGAGATACATAGGGCATCTTC 57.207 45.455 0.00 0.00 0.00 2.87
21 22 6.096141 CAGATACGAGATACATAGGGCATCTT 59.904 42.308 0.00 0.00 0.00 2.40
22 23 5.592282 CAGATACGAGATACATAGGGCATCT 59.408 44.000 0.00 0.00 0.00 2.90
23 24 5.590663 TCAGATACGAGATACATAGGGCATC 59.409 44.000 0.00 0.00 0.00 3.91
24 25 5.510430 TCAGATACGAGATACATAGGGCAT 58.490 41.667 0.00 0.00 0.00 4.40
25 26 4.918588 TCAGATACGAGATACATAGGGCA 58.081 43.478 0.00 0.00 0.00 5.36
26 27 4.944930 ACTCAGATACGAGATACATAGGGC 59.055 45.833 0.00 0.00 36.47 5.19
27 28 6.431543 ACAACTCAGATACGAGATACATAGGG 59.568 42.308 0.00 0.00 36.47 3.53
28 29 7.173390 TGACAACTCAGATACGAGATACATAGG 59.827 40.741 0.00 0.00 36.47 2.57
29 30 8.089115 TGACAACTCAGATACGAGATACATAG 57.911 38.462 0.00 0.00 36.47 2.23
30 31 7.715686 ACTGACAACTCAGATACGAGATACATA 59.284 37.037 4.73 0.00 46.32 2.29
31 32 6.544197 ACTGACAACTCAGATACGAGATACAT 59.456 38.462 4.73 0.00 46.32 2.29
32 33 5.880887 ACTGACAACTCAGATACGAGATACA 59.119 40.000 4.73 0.00 46.32 2.29
33 34 6.366315 ACTGACAACTCAGATACGAGATAC 57.634 41.667 4.73 0.00 46.32 2.24
34 35 5.527951 GGACTGACAACTCAGATACGAGATA 59.472 44.000 4.73 0.00 46.32 1.98
35 36 4.336993 GGACTGACAACTCAGATACGAGAT 59.663 45.833 4.73 0.00 46.32 2.75
36 37 3.690139 GGACTGACAACTCAGATACGAGA 59.310 47.826 4.73 0.00 46.32 4.04
37 38 3.440522 TGGACTGACAACTCAGATACGAG 59.559 47.826 4.73 0.00 46.32 4.18
38 39 3.418047 TGGACTGACAACTCAGATACGA 58.582 45.455 4.73 0.00 46.32 3.43
39 40 3.850122 TGGACTGACAACTCAGATACG 57.150 47.619 4.73 0.00 46.32 3.06
40 41 9.988815 ATAATATTGGACTGACAACTCAGATAC 57.011 33.333 4.73 0.00 46.32 2.24
42 43 9.334947 CAATAATATTGGACTGACAACTCAGAT 57.665 33.333 5.12 0.00 46.32 2.90
43 44 7.770433 CCAATAATATTGGACTGACAACTCAGA 59.230 37.037 23.94 0.00 46.14 3.27
44 45 7.467811 GCCAATAATATTGGACTGACAACTCAG 60.468 40.741 30.33 4.44 43.22 3.35
45 46 6.318648 GCCAATAATATTGGACTGACAACTCA 59.681 38.462 30.33 0.00 42.06 3.41
46 47 6.543831 AGCCAATAATATTGGACTGACAACTC 59.456 38.462 30.33 12.03 42.06 3.01
47 48 6.319658 CAGCCAATAATATTGGACTGACAACT 59.680 38.462 30.62 18.01 41.69 3.16
48 49 6.318648 TCAGCCAATAATATTGGACTGACAAC 59.681 38.462 31.65 17.68 42.29 3.32
49 50 6.422333 TCAGCCAATAATATTGGACTGACAA 58.578 36.000 31.65 21.20 42.29 3.18
50 51 6.000246 TCAGCCAATAATATTGGACTGACA 58.000 37.500 31.65 21.63 42.29 3.58
52 53 6.000246 TGTCAGCCAATAATATTGGACTGA 58.000 37.500 31.65 31.65 43.53 3.41
53 54 6.263842 ACATGTCAGCCAATAATATTGGACTG 59.736 38.462 30.33 29.90 42.06 3.51
54 55 6.367983 ACATGTCAGCCAATAATATTGGACT 58.632 36.000 30.33 23.14 42.06 3.85
55 56 6.262944 TGACATGTCAGCCAATAATATTGGAC 59.737 38.462 30.33 20.89 36.87 4.02
56 57 6.262944 GTGACATGTCAGCCAATAATATTGGA 59.737 38.462 30.33 13.23 39.98 3.53
57 58 6.441274 GTGACATGTCAGCCAATAATATTGG 58.559 40.000 28.54 23.94 40.75 3.16
70 71 0.674581 ATGCCACGGTGACATGTCAG 60.675 55.000 28.54 19.64 40.75 3.51
71 72 0.954938 CATGCCACGGTGACATGTCA 60.955 55.000 24.56 24.56 37.10 3.58
72 73 1.796151 CATGCCACGGTGACATGTC 59.204 57.895 23.95 19.27 37.10 3.06
73 74 3.985877 CATGCCACGGTGACATGT 58.014 55.556 23.95 0.00 37.10 3.21
74 75 1.236616 ACACATGCCACGGTGACATG 61.237 55.000 28.45 28.45 45.28 3.21
75 76 0.323302 TACACATGCCACGGTGACAT 59.677 50.000 10.28 6.94 38.38 3.06
76 77 0.106894 TTACACATGCCACGGTGACA 59.893 50.000 10.28 4.26 38.38 3.58
77 78 1.448985 ATTACACATGCCACGGTGAC 58.551 50.000 10.28 0.00 38.38 3.67
78 79 2.080693 GAATTACACATGCCACGGTGA 58.919 47.619 10.28 0.00 38.38 4.02
79 80 2.083774 AGAATTACACATGCCACGGTG 58.916 47.619 0.00 0.00 40.78 4.94
80 81 2.489938 AGAATTACACATGCCACGGT 57.510 45.000 0.00 0.00 0.00 4.83
81 82 3.009723 AGAAGAATTACACATGCCACGG 58.990 45.455 0.00 0.00 0.00 4.94
82 83 5.991328 ATAGAAGAATTACACATGCCACG 57.009 39.130 0.00 0.00 0.00 4.94
83 84 7.489113 CCAAAATAGAAGAATTACACATGCCAC 59.511 37.037 0.00 0.00 0.00 5.01
84 85 7.178274 ACCAAAATAGAAGAATTACACATGCCA 59.822 33.333 0.00 0.00 0.00 4.92
85 86 7.547227 ACCAAAATAGAAGAATTACACATGCC 58.453 34.615 0.00 0.00 0.00 4.40
86 87 7.702348 GGACCAAAATAGAAGAATTACACATGC 59.298 37.037 0.00 0.00 0.00 4.06
87 88 8.739039 TGGACCAAAATAGAAGAATTACACATG 58.261 33.333 0.00 0.00 0.00 3.21
88 89 8.877864 TGGACCAAAATAGAAGAATTACACAT 57.122 30.769 0.00 0.00 0.00 3.21
89 90 8.698973 TTGGACCAAAATAGAAGAATTACACA 57.301 30.769 3.84 0.00 0.00 3.72
90 91 9.406828 GTTTGGACCAAAATAGAAGAATTACAC 57.593 33.333 21.20 0.15 35.03 2.90
91 92 9.137459 TGTTTGGACCAAAATAGAAGAATTACA 57.863 29.630 21.20 8.19 35.03 2.41
92 93 9.974980 TTGTTTGGACCAAAATAGAAGAATTAC 57.025 29.630 21.20 5.63 35.03 1.89
94 95 9.325198 GTTTGTTTGGACCAAAATAGAAGAATT 57.675 29.630 21.20 0.00 35.03 2.17
95 96 8.482128 TGTTTGTTTGGACCAAAATAGAAGAAT 58.518 29.630 21.20 0.00 35.03 2.40
96 97 7.841956 TGTTTGTTTGGACCAAAATAGAAGAA 58.158 30.769 21.20 0.54 35.03 2.52
97 98 7.123547 ACTGTTTGTTTGGACCAAAATAGAAGA 59.876 33.333 21.20 10.68 35.03 2.87
98 99 7.264947 ACTGTTTGTTTGGACCAAAATAGAAG 58.735 34.615 21.20 16.95 35.03 2.85
99 100 7.093727 TGACTGTTTGTTTGGACCAAAATAGAA 60.094 33.333 21.20 10.52 35.03 2.10
100 101 6.378564 TGACTGTTTGTTTGGACCAAAATAGA 59.621 34.615 21.20 6.44 35.03 1.98
101 102 6.568869 TGACTGTTTGTTTGGACCAAAATAG 58.431 36.000 21.20 15.03 35.03 1.73
102 103 6.531503 TGACTGTTTGTTTGGACCAAAATA 57.468 33.333 21.20 10.75 35.03 1.40
103 104 5.413309 TGACTGTTTGTTTGGACCAAAAT 57.587 34.783 21.20 1.69 35.03 1.82
104 105 4.873746 TGACTGTTTGTTTGGACCAAAA 57.126 36.364 21.20 9.14 35.03 2.44
105 106 4.524714 TCTTGACTGTTTGTTTGGACCAAA 59.475 37.500 15.89 15.89 0.00 3.28
106 107 4.082845 TCTTGACTGTTTGTTTGGACCAA 58.917 39.130 1.69 1.69 0.00 3.67
107 108 3.691575 TCTTGACTGTTTGTTTGGACCA 58.308 40.909 0.00 0.00 0.00 4.02
108 109 4.918810 ATCTTGACTGTTTGTTTGGACC 57.081 40.909 0.00 0.00 0.00 4.46
109 110 8.696410 TTTTTATCTTGACTGTTTGTTTGGAC 57.304 30.769 0.00 0.00 0.00 4.02
131 132 9.847224 ACGGTCTGACCTTATGAATATATTTTT 57.153 29.630 23.49 0.00 35.66 1.94
132 133 9.273016 CACGGTCTGACCTTATGAATATATTTT 57.727 33.333 23.49 0.00 35.66 1.82
133 134 8.647796 TCACGGTCTGACCTTATGAATATATTT 58.352 33.333 23.49 0.00 35.66 1.40
134 135 8.088981 GTCACGGTCTGACCTTATGAATATATT 58.911 37.037 23.49 0.00 43.35 1.28
135 136 7.603651 GTCACGGTCTGACCTTATGAATATAT 58.396 38.462 23.49 0.00 43.35 0.86
136 137 6.978338 GTCACGGTCTGACCTTATGAATATA 58.022 40.000 23.49 1.99 43.35 0.86
137 138 5.844004 GTCACGGTCTGACCTTATGAATAT 58.156 41.667 23.49 0.00 43.35 1.28
138 139 5.258456 GTCACGGTCTGACCTTATGAATA 57.742 43.478 23.49 2.62 43.35 1.75
139 140 4.124851 GTCACGGTCTGACCTTATGAAT 57.875 45.455 23.49 0.00 43.35 2.57
140 141 3.587797 GTCACGGTCTGACCTTATGAA 57.412 47.619 23.49 7.62 43.35 2.57
149 150 0.392706 ATGCACAAGTCACGGTCTGA 59.607 50.000 0.00 0.00 0.00 3.27
150 151 0.514255 CATGCACAAGTCACGGTCTG 59.486 55.000 0.00 0.00 0.00 3.51
151 152 0.603707 CCATGCACAAGTCACGGTCT 60.604 55.000 0.00 0.00 0.00 3.85
152 153 1.577328 CCCATGCACAAGTCACGGTC 61.577 60.000 0.00 0.00 0.00 4.79
153 154 1.600636 CCCATGCACAAGTCACGGT 60.601 57.895 0.00 0.00 0.00 4.83
154 155 1.172180 AACCCATGCACAAGTCACGG 61.172 55.000 0.00 0.00 0.00 4.94
155 156 0.667993 AAACCCATGCACAAGTCACG 59.332 50.000 0.00 0.00 0.00 4.35
156 157 2.888834 AAAACCCATGCACAAGTCAC 57.111 45.000 0.00 0.00 0.00 3.67
157 158 4.404073 ACTTAAAAACCCATGCACAAGTCA 59.596 37.500 0.00 0.00 0.00 3.41
158 159 4.944048 ACTTAAAAACCCATGCACAAGTC 58.056 39.130 0.00 0.00 0.00 3.01
159 160 5.830991 TCTACTTAAAAACCCATGCACAAGT 59.169 36.000 0.00 0.00 0.00 3.16
160 161 6.325919 TCTACTTAAAAACCCATGCACAAG 57.674 37.500 0.00 0.00 0.00 3.16
161 162 6.716934 TTCTACTTAAAAACCCATGCACAA 57.283 33.333 0.00 0.00 0.00 3.33
162 163 6.716934 TTTCTACTTAAAAACCCATGCACA 57.283 33.333 0.00 0.00 0.00 4.57
163 164 8.601845 AATTTTCTACTTAAAAACCCATGCAC 57.398 30.769 0.00 0.00 32.42 4.57
184 185 8.987890 GCACATTTCACCTGTTGTATTAAATTT 58.012 29.630 0.00 0.00 0.00 1.82
185 186 7.602265 GGCACATTTCACCTGTTGTATTAAATT 59.398 33.333 0.00 0.00 0.00 1.82
186 187 7.096551 GGCACATTTCACCTGTTGTATTAAAT 58.903 34.615 0.00 0.00 0.00 1.40
187 188 6.040955 TGGCACATTTCACCTGTTGTATTAAA 59.959 34.615 0.00 0.00 0.00 1.52
188 189 5.536538 TGGCACATTTCACCTGTTGTATTAA 59.463 36.000 0.00 0.00 0.00 1.40
189 190 5.048364 GTGGCACATTTCACCTGTTGTATTA 60.048 40.000 13.86 0.00 44.52 0.98
190 191 3.894427 TGGCACATTTCACCTGTTGTATT 59.106 39.130 0.00 0.00 0.00 1.89
191 192 3.255642 GTGGCACATTTCACCTGTTGTAT 59.744 43.478 13.86 0.00 44.52 2.29
192 193 2.621055 GTGGCACATTTCACCTGTTGTA 59.379 45.455 13.86 0.00 44.52 2.41
193 194 1.408702 GTGGCACATTTCACCTGTTGT 59.591 47.619 13.86 0.00 44.52 3.32
194 195 1.408340 TGTGGCACATTTCACCTGTTG 59.592 47.619 17.96 0.00 44.52 3.33
195 196 1.774110 TGTGGCACATTTCACCTGTT 58.226 45.000 17.96 0.00 44.52 3.16
196 197 1.682854 CTTGTGGCACATTTCACCTGT 59.317 47.619 22.73 0.00 44.52 4.00
197 198 1.955778 TCTTGTGGCACATTTCACCTG 59.044 47.619 22.73 4.87 44.52 4.00
198 199 2.363306 TCTTGTGGCACATTTCACCT 57.637 45.000 22.73 0.00 44.52 4.00
199 200 2.557924 TGATCTTGTGGCACATTTCACC 59.442 45.455 22.73 9.38 44.52 4.02
200 201 3.004629 TGTGATCTTGTGGCACATTTCAC 59.995 43.478 30.78 30.78 44.52 3.18
201 202 3.220940 TGTGATCTTGTGGCACATTTCA 58.779 40.909 22.73 19.88 44.52 2.69
202 203 3.921119 TGTGATCTTGTGGCACATTTC 57.079 42.857 22.73 17.65 44.52 2.17
203 204 3.638160 ACTTGTGATCTTGTGGCACATTT 59.362 39.130 22.73 9.17 44.52 2.32
204 205 3.225104 ACTTGTGATCTTGTGGCACATT 58.775 40.909 22.73 9.56 44.52 2.71
205 206 2.867624 ACTTGTGATCTTGTGGCACAT 58.132 42.857 22.73 6.53 44.52 3.21
206 207 2.346766 ACTTGTGATCTTGTGGCACA 57.653 45.000 17.96 17.96 40.44 4.57
207 208 2.618241 TCAACTTGTGATCTTGTGGCAC 59.382 45.455 11.55 11.55 0.00 5.01
208 209 2.929641 TCAACTTGTGATCTTGTGGCA 58.070 42.857 0.00 0.00 0.00 4.92
209 210 3.988379 TTCAACTTGTGATCTTGTGGC 57.012 42.857 0.00 0.00 35.70 5.01
210 211 5.745294 CACTTTTCAACTTGTGATCTTGTGG 59.255 40.000 0.00 0.00 35.70 4.17
211 212 6.554419 TCACTTTTCAACTTGTGATCTTGTG 58.446 36.000 0.00 0.00 35.70 3.33
212 213 6.599244 TCTCACTTTTCAACTTGTGATCTTGT 59.401 34.615 0.00 0.00 38.52 3.16
213 214 7.019774 TCTCACTTTTCAACTTGTGATCTTG 57.980 36.000 0.00 0.00 38.52 3.02
214 215 7.630242 TTCTCACTTTTCAACTTGTGATCTT 57.370 32.000 0.00 0.00 38.52 2.40
215 216 7.630242 TTTCTCACTTTTCAACTTGTGATCT 57.370 32.000 0.00 0.00 38.52 2.75
216 217 8.862550 ATTTTCTCACTTTTCAACTTGTGATC 57.137 30.769 0.00 0.00 38.52 2.92
261 262 9.771534 CCCTGTTTTACTTGGAAAATTTTATGA 57.228 29.630 2.75 0.00 31.29 2.15
262 263 8.998377 CCCCTGTTTTACTTGGAAAATTTTATG 58.002 33.333 2.75 0.00 31.29 1.90
263 264 8.160765 CCCCCTGTTTTACTTGGAAAATTTTAT 58.839 33.333 2.75 0.00 31.29 1.40
264 265 7.127493 ACCCCCTGTTTTACTTGGAAAATTTTA 59.873 33.333 2.75 0.00 31.29 1.52
265 266 6.069323 ACCCCCTGTTTTACTTGGAAAATTTT 60.069 34.615 2.28 2.28 31.29 1.82
266 267 5.430417 ACCCCCTGTTTTACTTGGAAAATTT 59.570 36.000 0.00 0.00 31.29 1.82
267 268 4.972568 ACCCCCTGTTTTACTTGGAAAATT 59.027 37.500 0.00 0.00 31.29 1.82
268 269 4.562767 ACCCCCTGTTTTACTTGGAAAAT 58.437 39.130 0.00 0.00 31.29 1.82
269 270 3.996957 ACCCCCTGTTTTACTTGGAAAA 58.003 40.909 0.00 0.00 0.00 2.29
270 271 3.691698 ACCCCCTGTTTTACTTGGAAA 57.308 42.857 0.00 0.00 0.00 3.13
271 272 3.052793 TCAACCCCCTGTTTTACTTGGAA 60.053 43.478 0.00 0.00 34.00 3.53
272 273 2.514582 TCAACCCCCTGTTTTACTTGGA 59.485 45.455 0.00 0.00 34.00 3.53
273 274 2.952116 TCAACCCCCTGTTTTACTTGG 58.048 47.619 0.00 0.00 34.00 3.61
274 275 5.304357 AGAATTCAACCCCCTGTTTTACTTG 59.696 40.000 8.44 0.00 34.00 3.16
275 276 5.304357 CAGAATTCAACCCCCTGTTTTACTT 59.696 40.000 8.44 0.00 34.00 2.24
276 277 4.832823 CAGAATTCAACCCCCTGTTTTACT 59.167 41.667 8.44 0.00 34.00 2.24
277 278 4.560716 GCAGAATTCAACCCCCTGTTTTAC 60.561 45.833 8.44 0.00 34.00 2.01
278 279 3.576550 GCAGAATTCAACCCCCTGTTTTA 59.423 43.478 8.44 0.00 34.00 1.52
279 280 2.368548 GCAGAATTCAACCCCCTGTTTT 59.631 45.455 8.44 0.00 34.00 2.43
280 281 1.970640 GCAGAATTCAACCCCCTGTTT 59.029 47.619 8.44 0.00 34.00 2.83
281 282 1.147817 AGCAGAATTCAACCCCCTGTT 59.852 47.619 8.44 0.00 37.80 3.16
282 283 0.779997 AGCAGAATTCAACCCCCTGT 59.220 50.000 8.44 0.00 0.00 4.00
283 284 1.180029 CAGCAGAATTCAACCCCCTG 58.820 55.000 8.44 0.00 0.00 4.45
284 285 0.040204 CCAGCAGAATTCAACCCCCT 59.960 55.000 8.44 0.00 0.00 4.79
285 286 0.972471 CCCAGCAGAATTCAACCCCC 60.972 60.000 8.44 0.00 0.00 5.40
286 287 0.039618 TCCCAGCAGAATTCAACCCC 59.960 55.000 8.44 0.00 0.00 4.95
287 288 1.923356 TTCCCAGCAGAATTCAACCC 58.077 50.000 8.44 0.00 0.00 4.11
288 289 3.157087 TCTTTCCCAGCAGAATTCAACC 58.843 45.455 8.44 0.00 0.00 3.77
289 290 4.853924 TTCTTTCCCAGCAGAATTCAAC 57.146 40.909 8.44 0.00 0.00 3.18
290 291 5.653769 CCTATTCTTTCCCAGCAGAATTCAA 59.346 40.000 8.44 0.00 39.83 2.69
291 292 5.195940 CCTATTCTTTCCCAGCAGAATTCA 58.804 41.667 8.44 0.00 39.83 2.57
292 293 4.582240 CCCTATTCTTTCCCAGCAGAATTC 59.418 45.833 0.00 0.00 39.83 2.17
293 294 4.230502 TCCCTATTCTTTCCCAGCAGAATT 59.769 41.667 0.62 0.00 39.83 2.17
294 295 3.788142 TCCCTATTCTTTCCCAGCAGAAT 59.212 43.478 0.00 0.00 41.62 2.40
295 296 3.189606 TCCCTATTCTTTCCCAGCAGAA 58.810 45.455 0.00 0.00 33.55 3.02
296 297 2.845659 TCCCTATTCTTTCCCAGCAGA 58.154 47.619 0.00 0.00 0.00 4.26
297 298 3.117738 ACATCCCTATTCTTTCCCAGCAG 60.118 47.826 0.00 0.00 0.00 4.24
298 299 2.852449 ACATCCCTATTCTTTCCCAGCA 59.148 45.455 0.00 0.00 0.00 4.41
299 300 3.584733 ACATCCCTATTCTTTCCCAGC 57.415 47.619 0.00 0.00 0.00 4.85
300 301 5.841237 TCTCTACATCCCTATTCTTTCCCAG 59.159 44.000 0.00 0.00 0.00 4.45
301 302 5.788430 TCTCTACATCCCTATTCTTTCCCA 58.212 41.667 0.00 0.00 0.00 4.37
302 303 6.943899 ATCTCTACATCCCTATTCTTTCCC 57.056 41.667 0.00 0.00 0.00 3.97
303 304 9.936759 CTTTATCTCTACATCCCTATTCTTTCC 57.063 37.037 0.00 0.00 0.00 3.13
310 311 9.676129 TCCTTTTCTTTATCTCTACATCCCTAT 57.324 33.333 0.00 0.00 0.00 2.57
311 312 9.502035 TTCCTTTTCTTTATCTCTACATCCCTA 57.498 33.333 0.00 0.00 0.00 3.53
312 313 7.996758 TCCTTTTCTTTATCTCTACATCCCT 57.003 36.000 0.00 0.00 0.00 4.20
313 314 9.634021 AATTCCTTTTCTTTATCTCTACATCCC 57.366 33.333 0.00 0.00 0.00 3.85
317 318 9.793259 ACACAATTCCTTTTCTTTATCTCTACA 57.207 29.630 0.00 0.00 0.00 2.74
340 341 2.598907 CGACCGTGTCAATGAACAACAC 60.599 50.000 5.15 0.00 39.87 3.32
387 388 3.031013 CTCTCTTCTTCTCCTCCCCTTC 58.969 54.545 0.00 0.00 0.00 3.46
392 393 4.399303 CACTCTTCTCTCTTCTTCTCCTCC 59.601 50.000 0.00 0.00 0.00 4.30
393 394 5.253330 TCACTCTTCTCTCTTCTTCTCCTC 58.747 45.833 0.00 0.00 0.00 3.71
403 404 2.706890 GTCGGTCTCACTCTTCTCTCT 58.293 52.381 0.00 0.00 0.00 3.10
404 405 1.395608 CGTCGGTCTCACTCTTCTCTC 59.604 57.143 0.00 0.00 0.00 3.20
441 465 1.677966 TTGGAGACGACGGAGGAGG 60.678 63.158 0.00 0.00 0.00 4.30
469 493 2.136298 TGGATTTATTTGGCAGGCGA 57.864 45.000 0.00 0.00 0.00 5.54
632 656 2.991329 TTCCGGGAATGAAGGGGGC 61.991 63.158 5.09 0.00 0.00 5.80
768 793 1.425428 CAGGGAAGCAACGCGATTC 59.575 57.895 15.93 11.17 0.00 2.52
769 794 2.040544 CCAGGGAAGCAACGCGATT 61.041 57.895 15.93 0.00 0.00 3.34
831 857 1.318158 GGACCCAAATCCTGCTGCTG 61.318 60.000 0.00 0.00 35.68 4.41
875 901 3.781307 CGGGGGACGCTGGAATCA 61.781 66.667 0.00 0.00 40.02 2.57
885 911 1.594331 GATCAATTAGCACGGGGGAC 58.406 55.000 0.00 0.00 0.00 4.46
886 912 0.105964 CGATCAATTAGCACGGGGGA 59.894 55.000 0.00 0.00 0.00 4.81
986 1012 6.194796 AGTTTTTCATACACCAATCCGATG 57.805 37.500 0.00 0.00 0.00 3.84
1178 1205 2.815647 GCGAAACCAGAGCTCGGG 60.816 66.667 28.76 28.76 37.23 5.14
1279 1306 1.490490 AGCACCCCACTACCACATATG 59.510 52.381 0.00 0.00 0.00 1.78
1295 1328 1.490490 TCCCTACCCATTCATCAGCAC 59.510 52.381 0.00 0.00 0.00 4.40
1361 1394 0.539438 TGGCATGTGAGGTTTCCCAC 60.539 55.000 0.00 0.00 0.00 4.61
1377 1410 8.368668 TCTACTCTCTTAGGCTATAAAATTGGC 58.631 37.037 0.00 0.00 0.00 4.52
1397 1430 8.243426 CAGCACATTCTAGGAATCTATCTACTC 58.757 40.741 0.00 0.00 0.00 2.59
1405 1438 3.776969 TGGACAGCACATTCTAGGAATCT 59.223 43.478 0.00 0.00 0.00 2.40
1440 1473 3.863424 TGCGCATGTTAAGCTAGTAGAAC 59.137 43.478 5.66 0.00 0.00 3.01
1480 1513 5.246656 ACATCATTGATCCACCAAACAATGT 59.753 36.000 15.05 0.00 45.23 2.71
1483 1516 5.184864 GGTACATCATTGATCCACCAAACAA 59.815 40.000 16.30 0.00 0.00 2.83
1506 1543 0.253044 CTGGGGAGTACACCACATGG 59.747 60.000 15.12 0.41 45.65 3.66
1508 1545 1.078823 TCTCTGGGGAGTACACCACAT 59.921 52.381 15.12 0.00 45.65 3.21
1636 1674 9.451206 AATGACAATTATAGGAAAAATCCCCAT 57.549 29.630 0.00 0.00 0.00 4.00
1660 1698 5.638133 CATCCCCAGTCCAATGATCTAAAT 58.362 41.667 0.00 0.00 0.00 1.40
1791 1829 4.220602 CCAGAAGACAAATTTGTAAGGGGG 59.779 45.833 23.33 17.36 42.43 5.40
1792 1830 4.832823 ACCAGAAGACAAATTTGTAAGGGG 59.167 41.667 23.33 20.70 42.43 4.79
1924 1963 4.473444 AGACCCAATATACATGGCAAAGG 58.527 43.478 0.00 0.00 36.58 3.11
1945 1984 3.192001 ACACATGGCAAAGCAGAACATAG 59.808 43.478 0.00 0.00 0.00 2.23
2009 2048 5.587844 AGGCATAAAAGATAGAACAGCACAG 59.412 40.000 0.00 0.00 0.00 3.66
2014 2053 8.778358 GGTGATAAGGCATAAAAGATAGAACAG 58.222 37.037 0.00 0.00 0.00 3.16
2075 2114 5.410132 TGACCCGTTATAATGAACACAACAG 59.590 40.000 6.24 0.00 0.00 3.16
2171 2210 2.218603 CTACCAACAAACCAAGAGCGT 58.781 47.619 0.00 0.00 0.00 5.07
2243 2283 1.767088 CTGAGCCATCTCCATTCCTGA 59.233 52.381 0.00 0.00 38.58 3.86
2387 2427 8.772705 CAAGCTCAAGGATCTACAGAATAATTC 58.227 37.037 0.00 0.00 0.00 2.17
2496 2581 7.552687 CCTAAGGTATTGTAGCATCAACTTGAA 59.447 37.037 0.00 0.00 0.00 2.69
2497 2582 7.047891 CCTAAGGTATTGTAGCATCAACTTGA 58.952 38.462 0.00 0.00 0.00 3.02
2556 2641 6.170506 AGGCATACGAAGTTTCTGTTAATCA 58.829 36.000 0.00 0.00 37.78 2.57
2616 2701 3.567164 AGCTTGAGACAACATGAAACTGG 59.433 43.478 0.00 0.00 0.00 4.00
2646 2731 5.992217 GCTCTACCCCACAAATACTATCTTG 59.008 44.000 0.00 0.00 0.00 3.02
2651 2736 2.101917 GCGCTCTACCCCACAAATACTA 59.898 50.000 0.00 0.00 0.00 1.82
2659 2744 2.472909 GCAATGCGCTCTACCCCAC 61.473 63.158 9.73 0.00 37.77 4.61
2670 2755 1.569708 ACAAAACAACCAGCAATGCG 58.430 45.000 0.00 0.00 0.00 4.73
2712 2797 8.958119 TGACTTTATGACCAGTAAATCCATAC 57.042 34.615 0.00 0.00 0.00 2.39
2723 2808 3.012518 CTGGCCTTGACTTTATGACCAG 58.987 50.000 3.32 0.00 37.69 4.00
2758 2843 5.179555 GGTGATGTTTGACTACTTTCCAGTC 59.820 44.000 0.00 0.00 42.31 3.51
2810 2895 6.268847 AGGTGAAAATACAATAAACTTGCCCA 59.731 34.615 0.00 0.00 0.00 5.36
2839 2924 3.021695 CCAAATCCACAGAGCACATGAT 58.978 45.455 0.00 0.00 0.00 2.45
2870 2955 5.392380 GCAATACATGTCAACTTTCCAGGAG 60.392 44.000 0.00 0.00 0.00 3.69
2872 2957 4.460382 AGCAATACATGTCAACTTTCCAGG 59.540 41.667 0.00 0.00 0.00 4.45
2884 2970 5.643777 GGTAACAGAGACAAGCAATACATGT 59.356 40.000 2.69 2.69 31.55 3.21
3007 3099 4.550076 AGGAACAGAGAAGGAGAACATG 57.450 45.455 0.00 0.00 0.00 3.21
3031 3124 3.019564 GGAGCTTAAACATGCATGAGGT 58.980 45.455 32.75 23.22 0.00 3.85
3032 3125 2.360165 GGGAGCTTAAACATGCATGAGG 59.640 50.000 32.75 12.34 0.00 3.86
3035 3128 4.178540 CAAAGGGAGCTTAAACATGCATG 58.821 43.478 25.09 25.09 0.00 4.06
3223 3401 6.910536 AGATTTTGACATACTCCGATGTTC 57.089 37.500 0.00 0.00 40.18 3.18
3229 3407 6.371548 TCCAAAGAAGATTTTGACATACTCCG 59.628 38.462 0.37 0.00 39.79 4.63
3242 3420 6.008960 AGCACAAAGAGATCCAAAGAAGATT 58.991 36.000 0.00 0.00 0.00 2.40
3297 3475 8.992349 TCATCTGGGATAAGAAAGACAAATAGA 58.008 33.333 0.00 0.00 0.00 1.98
3299 3477 9.396022 GTTCATCTGGGATAAGAAAGACAAATA 57.604 33.333 0.00 0.00 0.00 1.40
3300 3478 7.890127 TGTTCATCTGGGATAAGAAAGACAAAT 59.110 33.333 0.00 0.00 0.00 2.32
3301 3479 7.174946 GTGTTCATCTGGGATAAGAAAGACAAA 59.825 37.037 0.00 0.00 0.00 2.83
3304 3482 5.586643 GGTGTTCATCTGGGATAAGAAAGAC 59.413 44.000 0.00 0.00 0.00 3.01
3305 3483 5.626809 CGGTGTTCATCTGGGATAAGAAAGA 60.627 44.000 0.00 0.00 0.00 2.52
3306 3484 4.572389 CGGTGTTCATCTGGGATAAGAAAG 59.428 45.833 0.00 0.00 0.00 2.62
3391 3570 3.030668 TCATATGCACATACCGCAGAG 57.969 47.619 0.00 0.00 43.88 3.35
3417 3596 2.613026 TCACGGTGAAAGCTCAAAGA 57.387 45.000 8.68 0.00 31.88 2.52
3426 3605 2.938838 ACCTTGGAATTCACGGTGAAA 58.061 42.857 25.64 8.18 45.02 2.69
3467 3646 3.365472 CAATACAGGGGAAAGGGAAAGG 58.635 50.000 0.00 0.00 0.00 3.11
3468 3647 3.245622 ACCAATACAGGGGAAAGGGAAAG 60.246 47.826 0.00 0.00 0.00 2.62
3469 3648 2.725227 ACCAATACAGGGGAAAGGGAAA 59.275 45.455 0.00 0.00 0.00 3.13
3470 3649 2.310647 GACCAATACAGGGGAAAGGGAA 59.689 50.000 0.00 0.00 0.00 3.97
3471 3650 1.920351 GACCAATACAGGGGAAAGGGA 59.080 52.381 0.00 0.00 0.00 4.20
3472 3651 1.638589 TGACCAATACAGGGGAAAGGG 59.361 52.381 0.00 0.00 0.00 3.95
3595 3774 7.414222 AAGTACAAATGCAGATTGATTGGAT 57.586 32.000 18.76 1.67 0.00 3.41
3665 3844 0.592637 TGCTCACCTGCGAAAATGTG 59.407 50.000 0.00 0.00 35.36 3.21
3751 3931 5.435686 TTATAAGACACAGAACAGGGCAT 57.564 39.130 0.00 0.00 0.00 4.40
3752 3932 4.901197 TTATAAGACACAGAACAGGGCA 57.099 40.909 0.00 0.00 0.00 5.36
3763 3943 6.235231 TCCCAACTCCAGATTATAAGACAC 57.765 41.667 0.00 0.00 0.00 3.67
3829 4009 2.018542 TCGGGGTTTTCTTCTATGCG 57.981 50.000 0.00 0.00 0.00 4.73
3843 4023 3.845472 CGTTTACGCGCTTCGGGG 61.845 66.667 5.73 0.00 43.94 5.73
3846 4026 2.084681 AGTCCGTTTACGCGCTTCG 61.085 57.895 5.73 6.30 45.38 3.79
3932 4120 8.034804 GCCCACATTTTACATACAAAAGAATCT 58.965 33.333 0.00 0.00 31.29 2.40
3976 4164 3.131933 AGGACAGAGAGGATTTGATCACG 59.868 47.826 0.00 0.00 0.00 4.35
4017 4205 2.726351 CCAGAACGAGAGGCCCCTC 61.726 68.421 3.70 3.70 43.03 4.30
4065 4254 3.590466 ATTGACAGGTGGGGCCAGC 62.590 63.158 4.39 0.96 43.95 4.85
4164 4355 1.277326 TGCACTTATTCGCTGCTACG 58.723 50.000 0.00 0.00 0.00 3.51
4168 4359 2.549633 AACATGCACTTATTCGCTGC 57.450 45.000 0.00 0.00 0.00 5.25
4173 4364 6.839301 CGTACGATACAAACATGCACTTATTC 59.161 38.462 10.44 0.00 0.00 1.75
4193 4384 4.090354 CCCACAACTACAAATACACGTACG 59.910 45.833 15.01 15.01 0.00 3.67
4213 4404 5.068987 GTCAGGTACGGTGTATAAATACCCA 59.931 44.000 0.00 0.00 36.71 4.51
4214 4405 5.068987 TGTCAGGTACGGTGTATAAATACCC 59.931 44.000 0.00 0.00 36.71 3.69
4266 4459 5.164606 TGATCATGAATGATTGCACTTCG 57.835 39.130 0.00 0.00 46.84 3.79
4267 4460 6.561614 ACTTGATCATGAATGATTGCACTTC 58.438 36.000 15.03 0.00 46.84 3.01
4309 4502 0.179018 ACACCACAGCCTGTCCTTTC 60.179 55.000 0.00 0.00 0.00 2.62
4367 4562 3.118408 ACTGACCACAACATATATGGCGT 60.118 43.478 16.96 10.07 36.96 5.68
4368 4563 3.466836 ACTGACCACAACATATATGGCG 58.533 45.455 16.96 9.46 36.96 5.69
4392 4587 8.552083 TGTGATCATGCATATACATTCCTTAC 57.448 34.615 0.00 0.00 0.00 2.34
4443 4641 9.729023 TGACCATTTGCGATAATAATAAGTTTG 57.271 29.630 0.00 0.00 0.00 2.93
4445 4643 9.730420 GTTGACCATTTGCGATAATAATAAGTT 57.270 29.630 0.00 0.00 0.00 2.66
4446 4644 9.120538 AGTTGACCATTTGCGATAATAATAAGT 57.879 29.630 0.00 0.00 0.00 2.24
4447 4645 9.385902 CAGTTGACCATTTGCGATAATAATAAG 57.614 33.333 0.00 0.00 0.00 1.73
4450 4671 7.566760 TCAGTTGACCATTTGCGATAATAAT 57.433 32.000 0.00 0.00 0.00 1.28
4464 4685 3.813166 GAGGTCGATTTTTCAGTTGACCA 59.187 43.478 11.36 0.00 46.86 4.02
4465 4686 3.813166 TGAGGTCGATTTTTCAGTTGACC 59.187 43.478 1.03 1.03 45.46 4.02
4468 4689 5.762045 ACATTGAGGTCGATTTTTCAGTTG 58.238 37.500 0.00 0.00 0.00 3.16
4478 4699 2.879103 ACCCAAACATTGAGGTCGAT 57.121 45.000 0.00 0.00 31.35 3.59
4480 4701 3.053831 AGTACCCAAACATTGAGGTCG 57.946 47.619 6.54 0.00 36.23 4.79
4482 4703 3.895041 CCAAAGTACCCAAACATTGAGGT 59.105 43.478 7.89 7.89 37.74 3.85
4483 4704 4.022329 GTCCAAAGTACCCAAACATTGAGG 60.022 45.833 0.00 0.00 31.39 3.86
4484 4705 4.022329 GGTCCAAAGTACCCAAACATTGAG 60.022 45.833 0.00 0.00 31.39 3.02
4485 4706 3.892588 GGTCCAAAGTACCCAAACATTGA 59.107 43.478 0.00 0.00 31.39 2.57
4486 4707 3.639094 TGGTCCAAAGTACCCAAACATTG 59.361 43.478 0.00 0.00 36.06 2.82
4487 4708 3.917300 TGGTCCAAAGTACCCAAACATT 58.083 40.909 0.00 0.00 36.06 2.71
4585 4845 9.206870 CTTGGTGCTAACATCAAAATATGTTTT 57.793 29.630 7.46 0.00 46.07 2.43
4587 4847 7.178274 TCCTTGGTGCTAACATCAAAATATGTT 59.822 33.333 7.32 7.32 46.07 2.71
4588 4848 6.663093 TCCTTGGTGCTAACATCAAAATATGT 59.337 34.615 0.00 0.00 46.07 2.29
4589 4849 7.099266 TCCTTGGTGCTAACATCAAAATATG 57.901 36.000 0.00 0.00 46.07 1.78
4590 4850 7.716799 TTCCTTGGTGCTAACATCAAAATAT 57.283 32.000 0.00 0.00 46.07 1.28
4591 4851 7.531857 TTTCCTTGGTGCTAACATCAAAATA 57.468 32.000 0.00 0.00 46.07 1.40
4592 4852 6.418057 TTTCCTTGGTGCTAACATCAAAAT 57.582 33.333 0.00 0.00 46.07 1.82
4623 4888 3.388913 TCACCCCAAACCTTTTGGATTT 58.611 40.909 17.56 0.63 44.07 2.17
4624 4889 2.972021 CTCACCCCAAACCTTTTGGATT 59.028 45.455 17.56 2.86 44.07 3.01
4626 4891 1.571457 TCTCACCCCAAACCTTTTGGA 59.429 47.619 17.56 0.00 44.07 3.53
4628 4893 2.887152 CTCTCTCACCCCAAACCTTTTG 59.113 50.000 0.00 0.00 0.00 2.44
4632 4897 1.492993 GCCTCTCTCACCCCAAACCT 61.493 60.000 0.00 0.00 0.00 3.50
4633 4898 1.002011 GCCTCTCTCACCCCAAACC 60.002 63.158 0.00 0.00 0.00 3.27
4634 4899 0.035915 GAGCCTCTCTCACCCCAAAC 60.036 60.000 0.00 0.00 41.51 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.